Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37782.t1 | PNY05956.1 | 77.7 | 658 | 135 | 2 | 57 | 703 | 573 | 1229 | 1.10E-286 | 995.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37782.t1 | Q9SZ66 | 28.1 | 224 | 133 | 4 | 2 | 197 | 734 | 957 | 1.9e-10 | 69.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37782.t1 | A0A2K3NSE5 | 77.7 | 658 | 135 | 2 | 57 | 703 | 573 | 1229 | 7.7e-287 | 995.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05248 | MS.gene37782 | 0.893888 | 4.13E-75 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37782.t1 | MTR_3g012470 | 32.022 | 737 | 409 | 15 | 1 | 699 | 709 | 1391 | 1.45e-90 | 309 |
MS.gene37782.t1 | MTR_3g012470 | 34.862 | 327 | 177 | 6 | 1 | 310 | 709 | 1016 | 2.50e-46 | 178 |
MS.gene37782.t1 | MTR_6g078420 | 33.535 | 331 | 179 | 7 | 1 | 314 | 719 | 1025 | 3.29e-43 | 169 |
MS.gene37782.t1 | MTR_6g078420 | 37.198 | 207 | 127 | 2 | 428 | 631 | 1194 | 1400 | 7.97e-29 | 124 |
MS.gene37782.t1 | MTR_3g019080 | 37.405 | 262 | 145 | 5 | 1 | 261 | 703 | 946 | 3.07e-37 | 150 |
MS.gene37782.t1 | MTR_4g023260 | 27.221 | 349 | 203 | 8 | 7 | 322 | 718 | 1048 | 2.94e-26 | 115 |
MS.gene37782.t1 | MTR_4g023040 | 28.205 | 351 | 197 | 10 | 7 | 322 | 676 | 1006 | 2.82e-25 | 112 |
MS.gene37782.t1 | MTR_6g071430 | 30.769 | 299 | 144 | 8 | 1 | 293 | 740 | 981 | 5.27e-25 | 111 |
MS.gene37782.t1 | MTR_6g471220 | 40.136 | 147 | 86 | 2 | 96 | 240 | 6 | 152 | 6.74e-24 | 101 |
MS.gene37782.t1 | MTR_4g023060 | 26.648 | 349 | 205 | 8 | 7 | 322 | 703 | 1033 | 1.53e-23 | 107 |
MS.gene37782.t1 | MTR_6g471270 | 31.799 | 239 | 120 | 5 | 1 | 237 | 201 | 398 | 2.56e-23 | 105 |
MS.gene37782.t1 | MTR_5g090940 | 26.517 | 445 | 248 | 14 | 12 | 403 | 729 | 1147 | 1.44e-22 | 104 |
MS.gene37782.t1 | MTR_2g041070 | 33.036 | 224 | 128 | 4 | 1 | 223 | 711 | 913 | 1.79e-22 | 103 |
MS.gene37782.t1 | MTR_2g041070 | 33.036 | 224 | 128 | 4 | 1 | 223 | 711 | 913 | 1.94e-22 | 103 |
MS.gene37782.t1 | MTR_8g075440 | 31.513 | 238 | 140 | 7 | 1 | 237 | 724 | 939 | 2.11e-22 | 103 |
MS.gene37782.t1 | MTR_8g042660 | 28.333 | 300 | 168 | 8 | 1 | 262 | 721 | 1011 | 3.19e-22 | 103 |
MS.gene37782.t1 | MTR_6g471270 | 32.479 | 234 | 115 | 6 | 1 | 232 | 201 | 393 | 3.88e-22 | 99.8 |
MS.gene37782.t1 | MTR_6g072320 | 31.557 | 244 | 157 | 6 | 32 | 270 | 691 | 929 | 8.29e-22 | 101 |
MS.gene37782.t1 | MTR_6g071945 | 31.557 | 244 | 157 | 6 | 32 | 270 | 691 | 929 | 8.29e-22 | 101 |
MS.gene37782.t1 | MTR_6g072450 | 30.453 | 243 | 161 | 3 | 22 | 258 | 683 | 923 | 1.10e-21 | 101 |
MS.gene37782.t1 | MTR_6g076090 | 32.197 | 264 | 146 | 7 | 1 | 258 | 723 | 959 | 1.22e-21 | 100 |
MS.gene37782.t1 | MTR_6g075970 | 28.763 | 299 | 164 | 10 | 1 | 288 | 732 | 992 | 4.29e-21 | 99.4 |
MS.gene37782.t1 | MTR_0038s0080 | 28.763 | 299 | 164 | 10 | 1 | 288 | 732 | 992 | 4.29e-21 | 99.4 |
MS.gene37782.t1 | MTR_6g074810 | 28.862 | 246 | 165 | 5 | 22 | 257 | 698 | 943 | 8.32e-21 | 98.2 |
MS.gene37782.t1 | MTR_8g069625 | 31.984 | 247 | 150 | 9 | 22 | 258 | 678 | 916 | 1.02e-20 | 98.2 |
MS.gene37782.t1 | MTR_5g038180 | 30.483 | 269 | 158 | 9 | 1 | 264 | 734 | 978 | 2.01e-20 | 97.1 |
MS.gene37782.t1 | MTR_6g471160 | 35.000 | 200 | 97 | 4 | 23 | 190 | 467 | 665 | 2.64e-20 | 96.3 |
MS.gene37782.t1 | MTR_6g075950 | 30.263 | 228 | 129 | 6 | 12 | 236 | 599 | 799 | 2.69e-20 | 96.7 |
MS.gene37782.t1 | MTR_0038s0060 | 30.263 | 228 | 129 | 6 | 12 | 236 | 617 | 817 | 2.77e-20 | 96.7 |
MS.gene37782.t1 | MTR_6g471160 | 34.928 | 209 | 100 | 5 | 26 | 199 | 625 | 832 | 3.20e-20 | 96.3 |
MS.gene37782.t1 | MTR_8g042440 | 27.119 | 295 | 142 | 6 | 1 | 244 | 724 | 996 | 1.60e-19 | 94.4 |
MS.gene37782.t1 | MTR_1g060030 | 29.682 | 283 | 163 | 8 | 1 | 278 | 553 | 804 | 1.66e-19 | 94.0 |
MS.gene37782.t1 | MTR_4g016610 | 31.933 | 238 | 138 | 6 | 1 | 236 | 707 | 922 | 1.84e-19 | 94.0 |
MS.gene37782.t1 | MTR_5g040490 | 28.980 | 245 | 157 | 5 | 1 | 242 | 725 | 955 | 1.98e-19 | 94.0 |
MS.gene37782.t1 | MTR_6g076220 | 31.535 | 241 | 130 | 8 | 1 | 236 | 731 | 941 | 2.06e-19 | 94.0 |
MS.gene37782.t1 | MTR_6g074820 | 28.803 | 309 | 175 | 4 | 20 | 287 | 654 | 958 | 2.16e-19 | 94.0 |
MS.gene37782.t1 | MTR_6g075690 | 29.583 | 240 | 135 | 7 | 1 | 235 | 700 | 910 | 2.81e-19 | 93.6 |
MS.gene37782.t1 | MTR_6g472230 | 31.174 | 247 | 136 | 6 | 23 | 237 | 829 | 1073 | 4.82e-19 | 92.8 |
MS.gene37782.t1 | MTR_6g472300 | 31.048 | 248 | 137 | 6 | 23 | 238 | 645 | 890 | 5.64e-19 | 92.4 |
MS.gene37782.t1 | MTR_5g040440 | 32.461 | 191 | 110 | 3 | 1 | 190 | 467 | 639 | 9.09e-19 | 91.3 |
MS.gene37782.t1 | MTR_6g071895 | 30.712 | 267 | 167 | 10 | 1 | 258 | 389 | 646 | 1.19e-18 | 91.3 |
MS.gene37782.t1 | MTR_8g042470 | 27.879 | 330 | 161 | 11 | 1 | 279 | 722 | 1025 | 1.64e-18 | 91.3 |
MS.gene37782.t1 | MTR_8g042470 | 27.879 | 330 | 161 | 11 | 1 | 279 | 722 | 1025 | 1.71e-18 | 91.3 |
MS.gene37782.t1 | MTR_6g072250 | 30.712 | 267 | 167 | 10 | 1 | 258 | 609 | 866 | 1.96e-18 | 90.9 |
MS.gene37782.t1 | MTR_6g071895 | 30.712 | 267 | 167 | 10 | 1 | 258 | 609 | 866 | 1.96e-18 | 90.9 |
MS.gene37782.t1 | MTR_0019s0100 | 28.992 | 238 | 145 | 7 | 1 | 236 | 732 | 947 | 2.94e-18 | 90.1 |
MS.gene37782.t1 | MTR_8g087130 | 30.802 | 237 | 139 | 8 | 2 | 236 | 512 | 725 | 3.26e-18 | 89.7 |
MS.gene37782.t1 | MTR_6g077500 | 31.933 | 238 | 135 | 8 | 1 | 237 | 730 | 941 | 4.17e-18 | 89.7 |
MS.gene37782.t1 | MTR_6g072780 | 31.604 | 212 | 120 | 5 | 13 | 223 | 635 | 822 | 6.34e-18 | 89.0 |
MS.gene37782.t1 | MTR_6g072780 | 31.604 | 212 | 120 | 5 | 13 | 223 | 635 | 822 | 6.74e-18 | 89.0 |
MS.gene37782.t1 | MTR_8g042470 | 27.879 | 330 | 161 | 11 | 1 | 279 | 722 | 1025 | 6.81e-18 | 89.0 |
MS.gene37782.t1 | MTR_6g071790 | 33.816 | 207 | 133 | 4 | 35 | 237 | 679 | 885 | 6.91e-18 | 89.0 |
MS.gene37782.t1 | MTR_6g074875 | 29.461 | 241 | 165 | 4 | 22 | 257 | 679 | 919 | 9.57e-18 | 88.6 |
MS.gene37782.t1 | MTR_7g078270 | 29.918 | 244 | 130 | 6 | 1 | 217 | 158 | 387 | 9.89e-18 | 87.4 |
MS.gene37782.t1 | MTR_6g038720 | 34.078 | 179 | 94 | 6 | 1 | 178 | 75 | 230 | 2.62e-17 | 83.2 |
MS.gene37782.t1 | MTR_6g073250 | 30.290 | 241 | 135 | 7 | 1 | 236 | 724 | 936 | 3.84e-17 | 86.7 |
MS.gene37782.t1 | MTR_6g074660 | 30.072 | 276 | 135 | 6 | 20 | 241 | 651 | 922 | 8.13e-17 | 85.5 |
MS.gene37782.t1 | MTR_1g007300 | 28.679 | 265 | 149 | 6 | 27 | 257 | 678 | 936 | 1.49e-16 | 84.7 |
MS.gene37782.t1 | MTR_1g019550 | 26.190 | 336 | 173 | 15 | 1 | 318 | 1317 | 1595 | 1.73e-16 | 84.7 |
MS.gene37782.t1 | MTR_1g019550 | 26.190 | 336 | 173 | 15 | 1 | 318 | 1284 | 1562 | 2.00e-16 | 84.3 |
MS.gene37782.t1 | MTR_1g019550 | 26.190 | 336 | 173 | 15 | 1 | 318 | 1140 | 1418 | 2.56e-16 | 84.0 |
MS.gene37782.t1 | MTR_6g072760 | 29.008 | 262 | 155 | 6 | 3 | 237 | 597 | 854 | 2.81e-16 | 83.6 |
MS.gene37782.t1 | MTR_6g078480 | 29.412 | 272 | 162 | 10 | 88 | 346 | 954 | 1208 | 3.19e-16 | 83.6 |
MS.gene37782.t1 | MTR_4g023220 | 25.758 | 330 | 198 | 10 | 1 | 304 | 262 | 570 | 3.21e-16 | 83.6 |
MS.gene37782.t1 | MTR_6g078480 | 26.462 | 359 | 208 | 12 | 1 | 346 | 715 | 1030 | 3.22e-16 | 83.6 |
MS.gene37782.t1 | MTR_6g008140 | 30.493 | 223 | 139 | 6 | 22 | 234 | 559 | 775 | 4.38e-16 | 83.2 |
MS.gene37782.t1 | MTR_1g063970 | 30.126 | 239 | 144 | 5 | 1 | 238 | 368 | 584 | 5.33e-16 | 82.4 |
MS.gene37782.t1 | MTR_6g008140 | 30.493 | 223 | 139 | 6 | 22 | 234 | 698 | 914 | 5.67e-16 | 82.8 |
MS.gene37782.t1 | MTR_6g008140 | 30.493 | 223 | 139 | 6 | 22 | 234 | 544 | 760 | 5.71e-16 | 82.8 |
MS.gene37782.t1 | MTR_6g008140 | 30.493 | 223 | 139 | 6 | 22 | 234 | 874 | 1090 | 6.51e-16 | 82.8 |
MS.gene37782.t1 | MTR_0277s0020 | 30.233 | 215 | 141 | 5 | 22 | 230 | 681 | 892 | 9.09e-16 | 82.0 |
MS.gene37782.t1 | MTR_0277s0020 | 30.233 | 215 | 141 | 5 | 22 | 230 | 705 | 916 | 1.21e-15 | 82.0 |
MS.gene37782.t1 | MTR_8g042650 | 24.625 | 333 | 180 | 9 | 1 | 284 | 717 | 1027 | 1.27e-15 | 81.6 |
MS.gene37782.t1 | MTR_8g032830 | 26.282 | 312 | 193 | 12 | 1 | 296 | 718 | 1008 | 1.56e-15 | 81.3 |
MS.gene37782.t1 | MTR_6g077640 | 27.692 | 260 | 161 | 9 | 1 | 258 | 946 | 1180 | 2.06e-15 | 80.9 |
MS.gene37782.t1 | MTR_0277s0010 | 33.182 | 220 | 129 | 7 | 22 | 230 | 681 | 893 | 2.44e-15 | 80.9 |
MS.gene37782.t1 | MTR_0277s0010 | 33.182 | 220 | 129 | 7 | 22 | 230 | 608 | 820 | 2.46e-15 | 80.5 |
MS.gene37782.t1 | MTR_6g079140 | 27.692 | 260 | 161 | 9 | 1 | 258 | 966 | 1200 | 2.98e-15 | 80.5 |
MS.gene37782.t1 | MTR_1g063960 | 28.870 | 239 | 147 | 5 | 1 | 238 | 698 | 914 | 3.14e-15 | 80.5 |
MS.gene37782.t1 | MTR_4g051682 | 32.510 | 243 | 132 | 8 | 23 | 237 | 574 | 812 | 4.27e-15 | 79.7 |
MS.gene37782.t1 | MTR_7g078180 | 26.582 | 316 | 147 | 10 | 1 | 238 | 720 | 1028 | 5.37e-15 | 79.7 |
MS.gene37782.t1 | MTR_6g478030 | 36.646 | 161 | 92 | 5 | 22 | 175 | 702 | 859 | 5.83e-15 | 79.7 |
MS.gene37782.t1 | MTR_4g051738 | 28.340 | 247 | 149 | 7 | 27 | 247 | 661 | 905 | 6.71e-15 | 79.3 |
MS.gene37782.t1 | MTR_6g075880 | 27.309 | 249 | 135 | 7 | 23 | 236 | 646 | 883 | 6.73e-15 | 79.3 |
MS.gene37782.t1 | MTR_6g072510 | 30.075 | 266 | 152 | 8 | 26 | 277 | 646 | 891 | 1.15e-14 | 78.6 |
MS.gene37782.t1 | MTR_6g072570 | 31.737 | 167 | 107 | 3 | 92 | 251 | 33 | 199 | 1.30e-14 | 75.9 |
MS.gene37782.t1 | MTR_6g072480 | 29.804 | 255 | 150 | 9 | 1 | 249 | 724 | 955 | 2.25e-14 | 77.8 |
MS.gene37782.t1 | MTR_8g039910 | 27.852 | 298 | 144 | 8 | 1 | 247 | 733 | 1010 | 2.54e-14 | 77.4 |
MS.gene37782.t1 | MTR_8g039870 | 27.852 | 298 | 144 | 8 | 1 | 247 | 733 | 1010 | 2.54e-14 | 77.4 |
MS.gene37782.t1 | MTR_0007s0150 | 30.864 | 162 | 103 | 4 | 99 | 258 | 329 | 483 | 3.34e-14 | 76.6 |
MS.gene37782.t1 | MTR_0012s0290 | 35.338 | 133 | 82 | 3 | 107 | 237 | 790 | 920 | 5.12e-14 | 76.6 |
MS.gene37782.t1 | MTR_8g090305 | 32.812 | 192 | 102 | 3 | 1 | 167 | 260 | 449 | 5.59e-14 | 75.5 |
MS.gene37782.t1 | MTR_8g090305 | 33.495 | 206 | 111 | 5 | 1 | 180 | 189 | 394 | 4.69e-13 | 72.8 |
MS.gene37782.t1 | MTR_8g090305 | 31.250 | 208 | 113 | 4 | 1 | 180 | 118 | 323 | 8.26e-13 | 72.0 |
MS.gene37782.t1 | MTR_0012s0290 | 35.338 | 133 | 82 | 3 | 107 | 237 | 908 | 1038 | 6.79e-14 | 76.3 |
MS.gene37782.t1 | MTR_6g478020 | 32.759 | 174 | 109 | 4 | 22 | 189 | 929 | 1100 | 7.86e-14 | 75.9 |
MS.gene37782.t1 | MTR_3g006280 | 26.113 | 337 | 185 | 14 | 1 | 319 | 1225 | 1515 | 9.62e-14 | 75.9 |
MS.gene37782.t1 | MTR_6g083860 | 28.980 | 245 | 165 | 6 | 22 | 257 | 689 | 933 | 1.07e-13 | 75.5 |
MS.gene37782.t1 | MTR_7g078780 | 27.632 | 228 | 121 | 4 | 1 | 184 | 719 | 946 | 1.10e-13 | 75.5 |
MS.gene37782.t1 | MTR_7g078780 | 27.632 | 228 | 121 | 4 | 1 | 184 | 719 | 946 | 1.17e-13 | 75.5 |
MS.gene37782.t1 | MTR_6g069560 | 31.718 | 227 | 131 | 9 | 26 | 233 | 688 | 909 | 1.27e-13 | 75.1 |
MS.gene37782.t1 | MTR_6g072460 | 29.461 | 241 | 137 | 6 | 1 | 236 | 715 | 927 | 1.51e-13 | 75.1 |
MS.gene37782.t1 | MTR_6g072590 | 31.416 | 226 | 124 | 5 | 27 | 223 | 648 | 871 | 1.74e-13 | 74.7 |
MS.gene37782.t1 | MTR_6g079000 | 24.786 | 351 | 210 | 15 | 1 | 314 | 1355 | 1688 | 2.00e-13 | 74.7 |
MS.gene37782.t1 | MTR_6g078930 | 25.000 | 260 | 164 | 9 | 1 | 237 | 1100 | 1351 | 1.70e-12 | 71.6 |
MS.gene37782.t1 | MTR_0419s0040 | 30.556 | 216 | 139 | 6 | 22 | 230 | 698 | 909 | 6.75e-12 | 69.7 |
MS.gene37782.t1 | MTR_6g072310 | 30.453 | 243 | 138 | 7 | 23 | 237 | 656 | 895 | 2.24e-11 | 67.8 |
MS.gene37782.t1 | MTR_4g051698 | 31.416 | 226 | 127 | 7 | 23 | 223 | 654 | 876 | 2.30e-11 | 67.8 |
MS.gene37782.t1 | MTR_6g071935 | 30.453 | 243 | 138 | 7 | 23 | 237 | 637 | 876 | 2.37e-11 | 67.8 |
MS.gene37782.t1 | MTR_6g074650 | 31.933 | 238 | 146 | 8 | 7 | 238 | 508 | 735 | 2.71e-11 | 67.8 |
MS.gene37782.t1 | MTR_6g008140 | 29.444 | 180 | 114 | 4 | 22 | 192 | 559 | 734 | 5.90e-11 | 66.2 |
MS.gene37782.t1 | MTR_6g008140 | 29.444 | 180 | 114 | 4 | 22 | 192 | 592 | 767 | 7.60e-11 | 65.9 |
MS.gene37782.t1 | MTR_6g079090 | 26.818 | 220 | 131 | 7 | 117 | 319 | 1061 | 1267 | 9.90e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37782.t1 | AT5G45060 | 29.648 | 199 | 107 | 5 | 2 | 197 | 726 | 894 | 4.64e-14 | 76.6 |
MS.gene37782.t1 | AT5G45060 | 29.648 | 199 | 107 | 5 | 2 | 197 | 726 | 894 | 4.64e-14 | 76.6 |
MS.gene37782.t1 | AT3G51570 | 30.000 | 200 | 96 | 7 | 12 | 182 | 688 | 872 | 1.88e-11 | 68.2 |
MS.gene37782.t1 | AT3G51570 | 30.000 | 200 | 96 | 7 | 12 | 182 | 688 | 872 | 2.53e-11 | 67.8 |
MS.gene37782.t1 | AT5G45200 | 30.769 | 208 | 124 | 6 | 2 | 197 | 752 | 951 | 6.58e-11 | 66.6 |
MS.gene37782.t1 | AT5G45200 | 30.769 | 208 | 124 | 6 | 2 | 197 | 752 | 951 | 6.68e-11 | 66.2 |
MS.gene37782.t1 | AT4G36150 | 32.222 | 180 | 113 | 3 | 2 | 180 | 742 | 913 | 9.09e-11 | 66.2 |
Find 109 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGTACTTCCTTTCAGTTTC+TGG | 0.099802 | 6.3:-72724381 | MS.gene37782:CDS |
GCATCTTGCCTGAGAATTTA+AGG | 0.141317 | 6.3:-72724061 | MS.gene37782:CDS |
CTCGTATGGTTTCCCTTTAT+TGG | 0.161659 | 6.3:-72725166 | MS.gene37782:CDS |
TCACATTCATGCAGTTTAAT+TGG | 0.185572 | 6.3:+72723829 | None:intergenic |
CAGAATTTCTAAGGCTTTCT+TGG | 0.202619 | 6.3:+72723294 | None:intergenic |
CTTGTGTTACTTGATATTTC+TGG | 0.206880 | 6.3:-72725291 | MS.gene37782:CDS |
AGCTATATGGTGATAGAATT+TGG | 0.209577 | 6.3:-72723872 | MS.gene37782:CDS |
AATAATCTTCAACAAATTTC+TGG | 0.210917 | 6.3:-72724979 | MS.gene37782:CDS |
GGGAAGCCAACTAGTTTATT+TGG | 0.226997 | 6.3:-72722975 | MS.gene37782:CDS |
TACAAGTGATGATTCAAAAT+TGG | 0.249810 | 6.3:-72723341 | MS.gene37782:CDS |
CTTGTGCACAATGTCGAATT+TGG | 0.280462 | 6.3:+72724185 | None:intergenic |
CAGTTTCTGGTGATATTGTA+TGG | 0.303875 | 6.3:-72724368 | MS.gene37782:CDS |
GAGTTCTTTCAGAATTTCTA+AGG | 0.313323 | 6.3:+72723285 | None:intergenic |
TTGTGGAGTTCATGAGTATA+AGG | 0.318459 | 6.3:-72724228 | MS.gene37782:CDS |
AGATCAAGGGTTTCCAATAA+AGG | 0.318502 | 6.3:+72725153 | None:intergenic |
GAACTAGGAAATAAAAGAAT+TGG | 0.326392 | 6.3:-72724462 | MS.gene37782:CDS |
TCTTGAAATAGTTCAAGTTT+TGG | 0.328644 | 6.3:+72725264 | None:intergenic |
TAAATTTGATGAACTTTCAT+TGG | 0.330444 | 6.3:+72725239 | None:intergenic |
ATTTGTTCATCTGATATTTC+AGG | 0.331132 | 6.3:+72724035 | None:intergenic |
AATGTTGAATTCACAATCAT+TGG | 0.338385 | 6.3:-72724914 | MS.gene37782:CDS |
GAAGTTCAGATATCTATTAA+TGG | 0.340004 | 6.3:-72724426 | MS.gene37782:CDS |
GCATCTATATGTTCTAAATT+AGG | 0.341048 | 6.3:+72724949 | None:intergenic |
ACAAGAATTGCCTTGTAATA+TGG | 0.352049 | 6.3:-72725400 | MS.gene37782:CDS |
GGCAACAAAGAAATGGTTCT+AGG | 0.355145 | 6.3:+72725318 | None:intergenic |
ATTGAGGTAGGGTTACAAAA+TGG | 0.367080 | 6.3:+72725049 | None:intergenic |
ATATCAAGTAACACAAGATT+TGG | 0.367571 | 6.3:+72725297 | None:intergenic |
TTATCATCAAGAAAACTTGA+TGG | 0.372219 | 6.3:-72724343 | MS.gene37782:CDS |
TGCATGAATGTGAAGAATAA+AGG | 0.378043 | 6.3:-72723819 | MS.gene37782:intron |
ATAATCTTCAACAAATTTCT+GGG | 0.388919 | 6.3:-72724978 | MS.gene37782:CDS |
TCTTTAGATATGCAGCTATA+TGG | 0.391720 | 6.3:-72723885 | MS.gene37782:CDS |
TTGACACAAATTCTTTGAAC+TGG | 0.396527 | 6.3:+72723011 | None:intergenic |
ATGAAGCACAGGGCAATTCT+TGG | 0.401382 | 6.3:+72724489 | None:intergenic |
GCTATATGGTGATAGAATTT+GGG | 0.406693 | 6.3:-72723871 | MS.gene37782:CDS |
AAGATTTGGCAACAAAGAAA+TGG | 0.417138 | 6.3:+72725311 | None:intergenic |
TTTGCCGAGTCATCAAGAAT+TGG | 0.421448 | 6.3:-72723446 | MS.gene37782:CDS |
AAAGTGTTGCACAAATCTTA+AGG | 0.421639 | 6.3:-72725346 | MS.gene37782:CDS |
GATCAAGGGTTTCCAATAAA+GGG | 0.422352 | 6.3:+72725154 | None:intergenic |
AAGGAAGTACTGTTCTCTAT+TGG | 0.424478 | 6.3:+72724392 | None:intergenic |
TTTCTTCCAAATAAACTAGT+TGG | 0.428989 | 6.3:+72722969 | None:intergenic |
CTCATCCTCAATGTATCCTT+TGG | 0.431161 | 6.3:+72722757 | None:intergenic |
TCAGGCAGCCTTAAATTCTC+AGG | 0.433284 | 6.3:+72724053 | None:intergenic |
AATTGGCATTCTAATAGCAT+TGG | 0.442766 | 6.3:+72723846 | None:intergenic |
CTATGGTAGTTGAACTTGAA+TGG | 0.447439 | 6.3:+72724552 | None:intergenic |
AAGGGAAACCATACGAGGAT+TGG | 0.450781 | 6.3:+72725172 | None:intergenic |
CCCTACCTCAATGCTTCAAT+AGG | 0.455237 | 6.3:-72725038 | MS.gene37782:CDS |
ATGTCATTATGAAGATAACT+TGG | 0.455336 | 6.3:-72724096 | MS.gene37782:CDS |
GTGTCAATAGAGAGTGAGTT+GGG | 0.459553 | 6.3:-72722995 | MS.gene37782:CDS |
TTGTTGAAGATTATTGCAAT+TGG | 0.463285 | 6.3:+72724987 | None:intergenic |
AAGCTCAAAGAGATGAGTTA+AGG | 0.466483 | 6.3:-72722826 | MS.gene37782:CDS |
TCCTTGTAATAATGAATACT+TGG | 0.471344 | 6.3:-72724156 | MS.gene37782:CDS |
TATTGCAGTCACTGAGATCA+AGG | 0.472239 | 6.3:+72725139 | None:intergenic |
CTTCAAATTTGAATGTCTTG+TGG | 0.475425 | 6.3:+72724604 | None:intergenic |
CTGAAATTGACCATATTACA+AGG | 0.477056 | 6.3:+72725390 | None:intergenic |
GGCATTGGTAACCTTGACTT+TGG | 0.480923 | 6.3:+72724573 | None:intergenic |
AGGAGGATCCATGTCATTCT+CGG | 0.483498 | 6.3:-72724526 | MS.gene37782:CDS |
TGAAGCACAGGGCAATTCTT+GGG | 0.485517 | 6.3:+72724490 | None:intergenic |
GGCTCCAATTCTTGATGACT+CGG | 0.489421 | 6.3:+72723442 | None:intergenic |
ATTGGACCTCTTATTAAGCC+AGG | 0.499085 | 6.3:-72724896 | MS.gene37782:intron |
TTCATGGATGTTGATGATGT+TGG | 0.501106 | 6.3:+72723232 | None:intergenic |
AAAAGAGAAACATTTGAAGC+AGG | 0.515322 | 6.3:-72722860 | MS.gene37782:CDS |
AATAGATATCTGAACTTCAC+AGG | 0.515847 | 6.3:+72724431 | None:intergenic |
GATGACACATTTGTTTAGAG+AGG | 0.519007 | 6.3:+72723263 | None:intergenic |
TGTCAACCACTGCAGTGGCT+AGG | 0.521011 | 6.3:-72722901 | MS.gene37782:CDS |
TCAGAAATCCAATCCTCGTA+TGG | 0.529286 | 6.3:-72725180 | MS.gene37782:CDS |
TCCAAGTATTCATTATTACA+AGG | 0.531821 | 6.3:+72724155 | None:intergenic |
GTCAACCACTGCAGTGGCTA+GGG | 0.532813 | 6.3:-72722900 | MS.gene37782:CDS |
TAGCTTGCATGAGCTTTACA+TGG | 0.543475 | 6.3:-72725010 | MS.gene37782:CDS |
TATGTCTAAGGATGTGAGGT+TGG | 0.557917 | 6.3:+72725080 | None:intergenic |
ACATGGATCCTCCTTTGCTA+TGG | 0.559933 | 6.3:+72724535 | None:intergenic |
AATCATCGAGGTGGAAGAGA+CGG | 0.561993 | 6.3:-72725427 | MS.gene37782:CDS |
TGTGTCAATAGAGAGTGAGT+TGG | 0.565145 | 6.3:-72722996 | MS.gene37782:CDS |
TTACTGCATGAACAGAATTG+TGG | 0.570855 | 6.3:-72724306 | MS.gene37782:CDS |
GCCTATTGAAGCATTGAGGT+AGG | 0.574965 | 6.3:+72725037 | None:intergenic |
CCTATTGAAGCATTGAGGTA+GGG | 0.575960 | 6.3:+72725038 | None:intergenic |
TCTATATGTTCTAAATTAGG+TGG | 0.578315 | 6.3:+72724952 | None:intergenic |
AAGTTATAGCACCAAAGTCA+AGG | 0.580108 | 6.3:-72724584 | MS.gene37782:CDS |
TGCGAGTGAAGGCGCAGATG+TGG | 0.583999 | 6.3:-72724261 | MS.gene37782:intron |
GCGAAGACTGCGGTTGAGAG+CGG | 0.587914 | 6.3:-72722801 | MS.gene37782:CDS |
TTCAACTACCATAGCAAAGG+AGG | 0.591297 | 6.3:-72724543 | MS.gene37782:CDS |
GTTGAGAGCGGAGCATGAAG+CGG | 0.597998 | 6.3:-72722789 | MS.gene37782:CDS |
ACTTTAGTACTAACACCTCA+AGG | 0.598367 | 6.3:+72725364 | None:intergenic |
CTGAGCCTATTGAAGCATTG+AGG | 0.600306 | 6.3:+72725033 | None:intergenic |
TGTCATTATGAAGATAACTT+GGG | 0.602598 | 6.3:-72724095 | MS.gene37782:CDS |
CAATATCACCAGAAACTGAA+AGG | 0.604547 | 6.3:+72724373 | None:intergenic |
GGATCCATGTCATTCTCGGT+TGG | 0.606450 | 6.3:-72724522 | MS.gene37782:CDS |
GGTCAATTTCAGTAACCTTG+AGG | 0.608594 | 6.3:-72725379 | MS.gene37782:CDS |
ATTGCAGTCACTGAGATCAA+GGG | 0.609386 | 6.3:+72725140 | None:intergenic |
TAGTTGAACTTGAATGGCAT+TGG | 0.616623 | 6.3:+72724558 | None:intergenic |
ATGAAGCATATGTCTCAGCA+TGG | 0.619026 | 6.3:+72723371 | None:intergenic |
AGTGTCCCTAGCCACTGCAG+TGG | 0.620760 | 6.3:+72722895 | None:intergenic |
TTGATATGTCTAAGGATGTG+AGG | 0.622560 | 6.3:+72725076 | None:intergenic |
AGCATATGTCTCAGCATGGA+GGG | 0.627120 | 6.3:+72723375 | None:intergenic |
AAGGATACATTGAGGATGAG+TGG | 0.629136 | 6.3:-72722754 | MS.gene37782:CDS |
GGGCAATTCTTGGGAACTCG+TGG | 0.629162 | 6.3:+72724499 | None:intergenic |
TGAGGTTGGAAAAGCAACAA+AGG | 0.629239 | 6.3:+72725094 | None:intergenic |
ATTCAACATTGTGCAACTAG+TGG | 0.633165 | 6.3:+72724927 | None:intergenic |
GTGGCCAACCGAGAATGACA+TGG | 0.634194 | 6.3:+72724518 | None:intergenic |
AAGTTCAACTACCATAGCAA+AGG | 0.636300 | 6.3:-72724546 | MS.gene37782:CDS |
CAATAAAGGGAAACCATACG+AGG | 0.636666 | 6.3:+72725167 | None:intergenic |
TCATCAAGAATTGGAGCCAG+AGG | 0.639454 | 6.3:-72723437 | MS.gene37782:CDS |
GAACATGTCAACCACTGCAG+TGG | 0.639978 | 6.3:-72722906 | MS.gene37782:CDS |
AGCTACCAAAGGATACATTG+AGG | 0.647741 | 6.3:-72722762 | MS.gene37782:CDS |
AAATCTGAGAATCATCGAGG+TGG | 0.655565 | 6.3:-72725436 | MS.gene37782:CDS |
GAAGCGGCTAAAGCTACCAA+AGG | 0.658992 | 6.3:-72722773 | MS.gene37782:CDS |
AAGCATATGTCTCAGCATGG+AGG | 0.675214 | 6.3:+72723374 | None:intergenic |
CAGATGATGATGTTTCAATG+AGG | 0.678884 | 6.3:-72723177 | MS.gene37782:CDS |
TCATGAGTATAAGGACGATG+CGG | 0.711947 | 6.3:-72724219 | MS.gene37782:CDS |
GGAAAATCTGAGAATCATCG+AGG | 0.744237 | 6.3:-72725439 | MS.gene37782:CDS |
AGTTAAGGAAGCGAAGACTG+CGG | 0.746122 | 6.3:-72722811 | MS.gene37782:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAATATTGTTTAAAAATG+TGG | + | chr6.3:72723367-72723386 | None:intergenic | 10.0% |
!! | TTGAATAAAAAACTTAATTC+AGG | + | chr6.3:72723442-72723461 | None:intergenic | 15.0% |
!!! | AAATTTAGACATTGTTTTAT+CGG | + | chr6.3:72722940-72722959 | None:intergenic | 15.0% |
!! | AATAATCTTCAACAAATTTC+TGG | - | chr6.3:72723168-72723187 | MS.gene37782:CDS | 20.0% |
!! | ATAATCTTCAACAAATTTCT+GGG | - | chr6.3:72723169-72723188 | MS.gene37782:CDS | 20.0% |
!! | TAAATTTGATGAACTTTCAT+TGG | + | chr6.3:72722911-72722930 | None:intergenic | 20.0% |
!! | TAACATATGTGAATTCAAAT+AGG | + | chr6.3:72723303-72723322 | None:intergenic | 20.0% |
!!! | GTGTTATTTGATAAACAAAT+TGG | + | chr6.3:72723415-72723434 | None:intergenic | 20.0% |
! | AAAGTTACAAAAACTTGAAG+AGG | - | chr6.3:72725094-72725113 | MS.gene37782:CDS | 25.0% |
! | AAGTGAAACAAAAGATAGTA+AGG | + | chr6.3:72724405-72724424 | None:intergenic | 25.0% |
! | AAGTTACAAAAACTTGAAGA+GGG | - | chr6.3:72725095-72725114 | MS.gene37782:CDS | 25.0% |
! | AATGTTGAATTCACAATCAT+TGG | - | chr6.3:72723233-72723252 | MS.gene37782:CDS | 25.0% |
! | AGTGAAACAAAAGATAGTAA+GGG | + | chr6.3:72724404-72724423 | None:intergenic | 25.0% |
! | ATATCAAGTAACACAAGATT+TGG | + | chr6.3:72722853-72722872 | None:intergenic | 25.0% |
! | ATGTCATTATGAAGATAACT+TGG | - | chr6.3:72724051-72724070 | MS.gene37782:CDS | 25.0% |
! | ATTTGTTCATCTGATATTTC+AGG | + | chr6.3:72724115-72724134 | None:intergenic | 25.0% |
! | CACAAAATTGACAACAAATT+TGG | - | chr6.3:72724499-72724518 | MS.gene37782:CDS | 25.0% |
! | CATATGTTGATCATCTAATT+TGG | + | chr6.3:72724642-72724661 | None:intergenic | 25.0% |
! | GAACTAGGAAATAAAAGAAT+TGG | - | chr6.3:72723685-72723704 | MS.gene37782:intron | 25.0% |
! | GAAGTTCAGATATCTATTAA+TGG | - | chr6.3:72723721-72723740 | MS.gene37782:intron | 25.0% |
! | TACAAGTGATGATTCAAAAT+TGG | - | chr6.3:72724806-72724825 | MS.gene37782:intron | 25.0% |
! | TCCAAGTATTCATTATTACA+AGG | + | chr6.3:72723995-72724014 | None:intergenic | 25.0% |
! | TCCTTGTAATAATGAATACT+TGG | - | chr6.3:72723991-72724010 | MS.gene37782:CDS | 25.0% |
! | TGTCATTATGAAGATAACTT+GGG | - | chr6.3:72724052-72724071 | MS.gene37782:CDS | 25.0% |
! | TTATCATCAAGAAAACTTGA+TGG | - | chr6.3:72723804-72723823 | MS.gene37782:intron | 25.0% |
! | TTGTTGAAGATTATTGCAAT+TGG | + | chr6.3:72723163-72723182 | None:intergenic | 25.0% |
! | TTTCTTCCAAATAAACTAGT+TGG | + | chr6.3:72725181-72725200 | None:intergenic | 25.0% |
!! | ATATTGCAAAGTAGTTTTCA+TGG | + | chr6.3:72724934-72724953 | None:intergenic | 25.0% |
!! | CATGACAATTCTTTTCTAAT+AGG | - | chr6.3:72723516-72723535 | MS.gene37782:intron | 25.0% |
!! | GCATCTATATGTTCTAAATT+AGG | + | chr6.3:72723201-72723220 | None:intergenic | 25.0% |
!! | TCTATATGTTCTAAATTAGG+TGG | + | chr6.3:72723198-72723217 | None:intergenic | 25.0% |
!!! | ATGGTTTTTTGATATGTCTA+AGG | + | chr6.3:72723082-72723101 | None:intergenic | 25.0% |
!!! | TCTTGAAATAGTTCAAGTTT+TGG | + | chr6.3:72722886-72722905 | None:intergenic | 25.0% |
AAGATTTGGCAACAAAGAAA+TGG | + | chr6.3:72722839-72722858 | None:intergenic | 30.0% | |
AATAGATATCTGAACTTCAC+AGG | + | chr6.3:72723719-72723738 | None:intergenic | 30.0% | |
AATTGGCATTCTAATAGCAT+TGG | + | chr6.3:72724304-72724323 | None:intergenic | 30.0% | |
ACAAGAATTGCCTTGTAATA+TGG | - | chr6.3:72722747-72722766 | MS.gene37782:CDS | 30.0% | |
AGCTATATGGTGATAGAATT+TGG | - | chr6.3:72724275-72724294 | MS.gene37782:intron | 30.0% | |
CTGAAATTGACCATATTACA+AGG | + | chr6.3:72722760-72722779 | None:intergenic | 30.0% | |
CTTCAAATTTGAATGTCTTG+TGG | + | chr6.3:72723546-72723565 | None:intergenic | 30.0% | |
GAGTTCTTTCAGAATTTCTA+AGG | + | chr6.3:72724865-72724884 | None:intergenic | 30.0% | |
GCTATATGGTGATAGAATTT+GGG | - | chr6.3:72724276-72724295 | MS.gene37782:intron | 30.0% | |
TAACGATTACGTTCAGTATA+TGG | - | chr6.3:72724527-72724546 | MS.gene37782:CDS | 30.0% | |
TAGTTCAAAAATGAAGCACA+GGG | + | chr6.3:72723671-72723690 | None:intergenic | 30.0% | |
TCACATTCATGCAGTTTAAT+TGG | + | chr6.3:72724321-72724340 | None:intergenic | 30.0% | |
TCTTTAGATATGCAGCTATA+TGG | - | chr6.3:72724262-72724281 | MS.gene37782:intron | 30.0% | |
TGCATGAATGTGAAGAATAA+AGG | - | chr6.3:72724328-72724347 | MS.gene37782:CDS | 30.0% | |
TGTTGATCATCTAATTTGGA+TGG | + | chr6.3:72724638-72724657 | None:intergenic | 30.0% | |
TTGACACAAATTCTTTGAAC+TGG | + | chr6.3:72725139-72725158 | None:intergenic | 30.0% | |
! | AAAAGAGAAACATTTGAAGC+AGG | - | chr6.3:72725287-72725306 | MS.gene37782:CDS | 30.0% |
! | CAAAGTATTAGAGAAAAACC+TGG | + | chr6.3:72723272-72723291 | None:intergenic | 30.0% |
! | GGATAACACACAATTTTCTA+GGG | - | chr6.3:72724012-72724031 | MS.gene37782:CDS | 30.0% |
! | TGGATAACACACAATTTTCT+AGG | - | chr6.3:72724011-72724030 | MS.gene37782:CDS | 30.0% |
!! | AAAGTGTTGCACAAATCTTA+AGG | - | chr6.3:72722801-72722820 | MS.gene37782:CDS | 30.0% |
!! | CTTGTGTTACTTGATATTTC+TGG | - | chr6.3:72722856-72722875 | MS.gene37782:CDS | 30.0% |
AAAATCTAGGTAGGCTTGTA+GGG | + | chr6.3:72724428-72724447 | None:intergenic | 35.0% | |
AAGCTCAAAGAGATGAGTTA+AGG | - | chr6.3:72725321-72725340 | MS.gene37782:CDS | 35.0% | |
AAGTTATAGCACCAAAGTCA+AGG | - | chr6.3:72723563-72723582 | MS.gene37782:intron | 35.0% | |
AAGTTCAACTACCATAGCAA+AGG | - | chr6.3:72723601-72723620 | MS.gene37782:intron | 35.0% | |
ACTTTAGTACTAACACCTCA+AGG | + | chr6.3:72722786-72722805 | None:intergenic | 35.0% | |
AGATCAAGGGTTTCCAATAA+AGG | + | chr6.3:72722997-72723016 | None:intergenic | 35.0% | |
AGTGCAGTTCAAGAAAATCT+AGG | + | chr6.3:72724441-72724460 | None:intergenic | 35.0% | |
ATTCAACATTGTGCAACTAG+TGG | + | chr6.3:72723223-72723242 | None:intergenic | 35.0% | |
ATTGAGGTAGGGTTACAAAA+TGG | + | chr6.3:72723101-72723120 | None:intergenic | 35.0% | |
CAATATCACCAGAAACTGAA+AGG | + | chr6.3:72723777-72723796 | None:intergenic | 35.0% | |
CAGTTCAAGAAAATCTAGGT+AGG | + | chr6.3:72724437-72724456 | None:intergenic | 35.0% | |
CTAGTTCAAAAATGAAGCAC+AGG | + | chr6.3:72723672-72723691 | None:intergenic | 35.0% | |
CTATGGTAGTTGAACTTGAA+TGG | + | chr6.3:72723598-72723617 | None:intergenic | 35.0% | |
GAAAAACCTGGCTTAATAAG+AGG | + | chr6.3:72723260-72723279 | None:intergenic | 35.0% | |
GAAATTATAGATGCGAGTGA+AGG | - | chr6.3:72723875-72723894 | MS.gene37782:CDS | 35.0% | |
GATCAAGGGTTTCCAATAAA+GGG | + | chr6.3:72722996-72723015 | None:intergenic | 35.0% | |
GATGACACATTTGTTTAGAG+AGG | + | chr6.3:72724887-72724906 | None:intergenic | 35.0% | |
TAGTTGAACTTGAATGGCAT+TGG | + | chr6.3:72723592-72723611 | None:intergenic | 35.0% | |
TCATCACTAAAAAGTTCCTC+TGG | + | chr6.3:72724729-72724748 | None:intergenic | 35.0% | |
TTACTGCATGAACAGAATTG+TGG | - | chr6.3:72723841-72723860 | MS.gene37782:CDS | 35.0% | |
TTGATATGTCTAAGGATGTG+AGG | + | chr6.3:72723074-72723093 | None:intergenic | 35.0% | |
TTGTCTGCAGGAAGAAATTT+AGG | + | chr6.3:72724678-72724697 | None:intergenic | 35.0% | |
TTGTGGAGTTCATGAGTATA+AGG | - | chr6.3:72723919-72723938 | MS.gene37782:CDS | 35.0% | |
! | CAGATGATGATGTTTCAATG+AGG | - | chr6.3:72724970-72724989 | MS.gene37782:CDS | 35.0% |
!! | AAGGAAGTACTGTTCTCTAT+TGG | + | chr6.3:72723758-72723777 | None:intergenic | 35.0% |
!! | CAGAATTTCTAAGGCTTTCT+TGG | + | chr6.3:72724856-72724875 | None:intergenic | 35.0% |
!! | CAGTTTCTGGTGATATTGTA+TGG | - | chr6.3:72723779-72723798 | MS.gene37782:intron | 35.0% |
!! | CTGTGCTTCATTTTTGAACT+AGG | - | chr6.3:72723670-72723689 | MS.gene37782:intron | 35.0% |
!! | TTCATGGATGTTGATGATGT+TGG | + | chr6.3:72724918-72724937 | None:intergenic | 35.0% |
!! | TTTTAGCTGACTTTACTCAG+TGG | - | chr6.3:72725015-72725034 | MS.gene37782:CDS | 35.0% |
AAATCTGAGAATCATCGAGG+TGG | - | chr6.3:72722711-72722730 | MS.gene37782:CDS | 40.0% | |
AAGGATACATTGAGGATGAG+TGG | - | chr6.3:72725393-72725412 | MS.gene37782:CDS | 40.0% | |
AGCTACCAAAGGATACATTG+AGG | - | chr6.3:72725385-72725404 | MS.gene37782:CDS | 40.0% | |
ATGAAGCATATGTCTCAGCA+TGG | + | chr6.3:72724779-72724798 | None:intergenic | 40.0% | |
ATTGCAGTCACTGAGATCAA+GGG | + | chr6.3:72723010-72723029 | None:intergenic | 40.0% | |
ATTGGACCTCTTATTAAGCC+AGG | - | chr6.3:72723251-72723270 | MS.gene37782:CDS | 40.0% | |
CAATAAAGGGAAACCATACG+AGG | + | chr6.3:72722983-72723002 | None:intergenic | 40.0% | |
CAGTACTTCCTTTCAGTTTC+TGG | - | chr6.3:72723766-72723785 | MS.gene37782:intron | 40.0% | |
CCTACCAATTCACAAGTACT+CGG | + | chr6.3:72723484-72723503 | None:intergenic | 40.0% | |
CTACCAATTCACAAGTACTC+GGG | + | chr6.3:72723483-72723502 | None:intergenic | 40.0% | |
CTCATCCTCAATGTATCCTT+TGG | + | chr6.3:72725393-72725412 | None:intergenic | 40.0% | |
CTCGTATGGTTTCCCTTTAT+TGG | - | chr6.3:72722981-72723000 | MS.gene37782:CDS | 40.0% | |
CTTGTGCACAATGTCGAATT+TGG | + | chr6.3:72723965-72723984 | None:intergenic | 40.0% | |
GAAAATCTAGGTAGGCTTGT+AGG | + | chr6.3:72724429-72724448 | None:intergenic | 40.0% | |
GCATCTTGCCTGAGAATTTA+AGG | - | chr6.3:72724086-72724105 | MS.gene37782:CDS | 40.0% | |
GGAAAATCTGAGAATCATCG+AGG | - | chr6.3:72722708-72722727 | MS.gene37782:CDS | 40.0% | |
GGCAACAAAGAAATGGTTCT+AGG | + | chr6.3:72722832-72722851 | None:intergenic | 40.0% | |
GGTCAATTTCAGTAACCTTG+AGG | - | chr6.3:72722768-72722787 | MS.gene37782:CDS | 40.0% | |
GTGTCAATAGAGAGTGAGTT+GGG | - | chr6.3:72725152-72725171 | MS.gene37782:CDS | 40.0% | |
TATGTCTAAGGATGTGAGGT+TGG | + | chr6.3:72723070-72723089 | None:intergenic | 40.0% | |
TATTGCAGTCACTGAGATCA+AGG | + | chr6.3:72723011-72723030 | None:intergenic | 40.0% | |
TCAGAAATCCAATCCTCGTA+TGG | - | chr6.3:72722967-72722986 | MS.gene37782:CDS | 40.0% | |
TCATGAGTATAAGGACGATG+CGG | - | chr6.3:72723928-72723947 | MS.gene37782:CDS | 40.0% | |
TGAGGTTGGAAAAGCAACAA+AGG | + | chr6.3:72723056-72723075 | None:intergenic | 40.0% | |
TGTGTCAATAGAGAGTGAGT+TGG | - | chr6.3:72725151-72725170 | MS.gene37782:CDS | 40.0% | |
TTCAACTACCATAGCAAAGG+AGG | - | chr6.3:72723604-72723623 | MS.gene37782:intron | 40.0% | |
TTTGCCGAGTCATCAAGAAT+TGG | - | chr6.3:72724701-72724720 | MS.gene37782:intron | 40.0% | |
! | GATGTGGCAATATGCTTTTG+TGG | - | chr6.3:72723902-72723921 | MS.gene37782:CDS | 40.0% |
! | GGGAAGCCAACTAGTTTATT+TGG | - | chr6.3:72725172-72725191 | MS.gene37782:CDS | 40.0% |
! | TAGCTTGCATGAGCTTTACA+TGG | - | chr6.3:72723137-72723156 | MS.gene37782:CDS | 40.0% |
!! | CCTATTGAAGCATTGAGGTA+GGG | + | chr6.3:72723112-72723131 | None:intergenic | 40.0% |
AAGCATATGTCTCAGCATGG+AGG | + | chr6.3:72724776-72724795 | None:intergenic | 45.0% | |
AAGGGAAACCATACGAGGAT+TGG | + | chr6.3:72722978-72722997 | None:intergenic | 45.0% | |
AATCATCGAGGTGGAAGAGA+CGG | - | chr6.3:72722720-72722739 | MS.gene37782:CDS | 45.0% | |
ACATGGATCCTCCTTTGCTA+TGG | + | chr6.3:72723615-72723634 | None:intergenic | 45.0% | |
AGCATATGTCTCAGCATGGA+GGG | + | chr6.3:72724775-72724794 | None:intergenic | 45.0% | |
AGGAGGATCCATGTCATTCT+CGG | - | chr6.3:72723621-72723640 | MS.gene37782:intron | 45.0% | |
AGTTAAGGAAGCGAAGACTG+CGG | - | chr6.3:72725336-72725355 | MS.gene37782:CDS | 45.0% | |
ATGAAGCACAGGGCAATTCT+TGG | + | chr6.3:72723661-72723680 | None:intergenic | 45.0% | |
CCCTACCTCAATGCTTCAAT+AGG | - | chr6.3:72723109-72723128 | MS.gene37782:CDS | 45.0% | |
CCGAGTACTTGTGAATTGGT+AGG | - | chr6.3:72723481-72723500 | MS.gene37782:intron | 45.0% | |
CTTCCCGAGTACTTGTGAAT+TGG | - | chr6.3:72723477-72723496 | MS.gene37782:intron | 45.0% | |
TCAGGCAGCCTTAAATTCTC+AGG | + | chr6.3:72724097-72724116 | None:intergenic | 45.0% | |
TCATCAAGAATTGGAGCCAG+AGG | - | chr6.3:72724710-72724729 | MS.gene37782:intron | 45.0% | |
TGAAGCACAGGGCAATTCTT+GGG | + | chr6.3:72723660-72723679 | None:intergenic | 45.0% | |
! | GGCTCCAATTCTTGATGACT+CGG | + | chr6.3:72724708-72724727 | None:intergenic | 45.0% |
!! | CTGAGCCTATTGAAGCATTG+AGG | + | chr6.3:72723117-72723136 | None:intergenic | 45.0% |
!! | GCCTATTGAAGCATTGAGGT+AGG | + | chr6.3:72723113-72723132 | None:intergenic | 45.0% |
!! | GGCATTGGTAACCTTGACTT+TGG | + | chr6.3:72723577-72723596 | None:intergenic | 45.0% |
AAGTACTCGGGAAGAGACAC+GGG | + | chr6.3:72723471-72723490 | None:intergenic | 50.0% | |
CAAGTACTCGGGAAGAGACA+CGG | + | chr6.3:72723472-72723491 | None:intergenic | 50.0% | |
CTCGGCAAAATGTTGTCTGC+AGG | + | chr6.3:72724690-72724709 | None:intergenic | 50.0% | |
GAACATGTCAACCACTGCAG+TGG | - | chr6.3:72725241-72725260 | MS.gene37782:CDS | 50.0% | |
GAAGCGGCTAAAGCTACCAA+AGG | - | chr6.3:72725374-72725393 | MS.gene37782:CDS | 50.0% | |
GGATCCATGTCATTCTCGGT+TGG | - | chr6.3:72723625-72723644 | MS.gene37782:intron | 50.0% | |
GGGCAATTCTTGGGAACTCG+TGG | + | chr6.3:72723651-72723670 | None:intergenic | 55.0% | |
GTCAACCACTGCAGTGGCTA+GGG | - | chr6.3:72725247-72725266 | MS.gene37782:CDS | 55.0% | |
GTGGCCAACCGAGAATGACA+TGG | + | chr6.3:72723632-72723651 | None:intergenic | 55.0% | |
GTTGAGAGCGGAGCATGAAG+CGG | - | chr6.3:72725358-72725377 | MS.gene37782:CDS | 55.0% | |
TGTCAACCACTGCAGTGGCT+AGG | - | chr6.3:72725246-72725265 | MS.gene37782:CDS | 55.0% | |
AGTGTCCCTAGCCACTGCAG+TGG | + | chr6.3:72725255-72725274 | None:intergenic | 60.0% | |
GCGAAGACTGCGGTTGAGAG+CGG | - | chr6.3:72725346-72725365 | MS.gene37782:CDS | 60.0% | |
! | TGCGAGTGAAGGCGCAGATG+TGG | - | chr6.3:72723886-72723905 | MS.gene37782:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 72722706 | 72725463 | 72722706 | ID=MS.gene37782 |
chr6.3 | mRNA | 72722706 | 72725463 | 72722706 | ID=MS.gene37782.t1;Parent=MS.gene37782 |
chr6.3 | exon | 72724897 | 72725463 | 72724897 | ID=MS.gene37782.t1.exon1;Parent=MS.gene37782.t1 |
chr6.3 | CDS | 72724897 | 72725463 | 72724897 | ID=cds.MS.gene37782.t1;Parent=MS.gene37782.t1 |
chr6.3 | exon | 72724304 | 72724631 | 72724304 | ID=MS.gene37782.t1.exon2;Parent=MS.gene37782.t1 |
chr6.3 | CDS | 72724304 | 72724631 | 72724304 | ID=cds.MS.gene37782.t1;Parent=MS.gene37782.t1 |
chr6.3 | exon | 72723820 | 72724272 | 72723820 | ID=MS.gene37782.t1.exon3;Parent=MS.gene37782.t1 |
chr6.3 | CDS | 72723820 | 72724272 | 72723820 | ID=cds.MS.gene37782.t1;Parent=MS.gene37782.t1 |
chr6.3 | exon | 72722706 | 72723475 | 72722706 | ID=MS.gene37782.t1.exon4;Parent=MS.gene37782.t1 |
chr6.3 | CDS | 72722706 | 72723475 | 72722706 | ID=cds.MS.gene37782.t1;Parent=MS.gene37782.t1 |
Gene Sequence |
Protein sequence |