Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37855.t1 | XP_024640456.1 | 90.8 | 1375 | 122 | 3 | 1 | 1373 | 1 | 1372 | 0.00E+00 | 2514.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37855.t1 | Q7G9P4 | 60.8 | 1361 | 496 | 11 | 14 | 1370 | 3 | 1329 | 0.0e+00 | 1657.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37855.t1 | A0A396I152 | 90.8 | 1375 | 122 | 3 | 1 | 1373 | 1 | 1372 | 0.0e+00 | 2514.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene37855 | MS.gene052054 | PPI |
MS.gene37855 | MS.gene31092 | PPI |
MS.gene37855 | MS.gene78384 | PPI |
MS.gene37855 | MS.gene45551 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37855.t1 | MTR_5g087390 | 89.665 | 1374 | 123 | 3 | 1 | 1373 | 1 | 1356 | 0.0 | 2544 |
MS.gene37855.t1 | MTR_5g087410 | 78.400 | 1375 | 286 | 7 | 1 | 1370 | 1 | 1369 | 0.0 | 2170 |
MS.gene37855.t1 | MTR_5g087410 | 77.484 | 1248 | 271 | 6 | 1 | 1244 | 1 | 1242 | 0.0 | 1937 |
MS.gene37855.t1 | MTR_2g098030 | 31.320 | 1424 | 811 | 40 | 1 | 1346 | 1 | 1335 | 5.26e-174 | 555 |
MS.gene37855.t1 | MTR_2g098030 | 31.378 | 1415 | 805 | 39 | 9 | 1346 | 14 | 1339 | 1.09e-173 | 554 |
MS.gene37855.t1 | MTR_2g098030 | 30.879 | 1331 | 755 | 38 | 93 | 1346 | 3 | 1245 | 2.59e-164 | 527 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37855.t1 | AT2G27150 | 60.691 | 1361 | 497 | 10 | 14 | 1370 | 3 | 1329 | 0.0 | 1675 |
MS.gene37855.t1 | AT2G27150 | 60.691 | 1361 | 497 | 10 | 14 | 1370 | 3 | 1329 | 0.0 | 1675 |
MS.gene37855.t1 | AT3G43600 | 60.440 | 1365 | 482 | 15 | 13 | 1370 | 2 | 1315 | 0.0 | 1659 |
MS.gene37855.t1 | AT1G04580 | 59.473 | 1367 | 505 | 13 | 14 | 1369 | 6 | 1334 | 0.0 | 1655 |
MS.gene37855.t1 | AT5G20960 | 58.922 | 1373 | 529 | 16 | 8 | 1370 | 15 | 1362 | 0.0 | 1603 |
MS.gene37855.t1 | AT5G20960 | 58.922 | 1373 | 529 | 16 | 8 | 1370 | 15 | 1362 | 0.0 | 1603 |
MS.gene37855.t1 | AT2G27150 | 59.503 | 1247 | 467 | 10 | 128 | 1370 | 1 | 1213 | 0.0 | 1520 |
MS.gene37855.t1 | AT2G27150 | 59.503 | 1247 | 467 | 10 | 128 | 1370 | 1 | 1213 | 0.0 | 1520 |
MS.gene37855.t1 | AT2G27150 | 59.365 | 1196 | 448 | 10 | 14 | 1205 | 3 | 1164 | 0.0 | 1427 |
MS.gene37855.t1 | AT2G27150 | 57.856 | 1082 | 418 | 10 | 128 | 1205 | 1 | 1048 | 0.0 | 1274 |
MS.gene37855.t1 | AT4G34890 | 31.590 | 1415 | 799 | 38 | 12 | 1346 | 15 | 1340 | 2.02e-172 | 551 |
MS.gene37855.t1 | AT4G34900 | 31.431 | 1419 | 806 | 39 | 7 | 1346 | 2 | 1332 | 7.71e-166 | 533 |
MS.gene37855.t1 | AT4G34900 | 31.058 | 1333 | 753 | 38 | 93 | 1346 | 3 | 1248 | 1.58e-157 | 509 |
MS.gene37855.t1 | AT4G34900 | 29.967 | 1208 | 702 | 33 | 7 | 1154 | 2 | 1125 | 3.78e-126 | 421 |
MS.gene37855.t1 | AT1G02590 | 66.000 | 50 | 17 | 0 | 1189 | 1238 | 26 | 75 | 9.51e-18 | 80.1 |
Find 296 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTGGGGTTGAACTCTTTC+TGG | 0.120155 | 5.3:-70236834 | MS.gene37855:CDS |
GATAACATTGGAGGAATTTC+TGG | 0.152351 | 5.3:-70236212 | MS.gene37855:CDS |
ATTGGAGCAAAGACAATATT+TGG | 0.188110 | 5.3:-70235170 | MS.gene37855:CDS |
GGAATGTGTGTTTCACTCTT+TGG | 0.220249 | 5.3:-70237027 | MS.gene37855:CDS |
GTCAACCAAAGGATCATATT+TGG | 0.226270 | 5.3:+70237215 | None:intergenic |
GATATATCACCAACATGTTT+TGG | 0.235051 | 5.3:+70234846 | None:intergenic |
CCGTGCCCATCTTCCATTTC+AGG | 0.256850 | 5.3:+70229691 | None:intergenic |
CTCAACCCTGCTGTGGATTT+AGG | 0.264694 | 5.3:-70231813 | MS.gene37855:CDS |
GAATATGAAACAGACCTTAA+TGG | 0.268609 | 5.3:-70231313 | MS.gene37855:CDS |
GATCAATCAGGGATTGAAAT+TGG | 0.273893 | 5.3:-70236493 | MS.gene37855:CDS |
AAAGGAGCTTCAGAACTTAT+TGG | 0.274555 | 5.3:-70236659 | MS.gene37855:CDS |
TGCATTAGAGCTTGAGATAT+TGG | 0.276407 | 5.3:-70233392 | MS.gene37855:CDS |
AAGCATTAAAATTCCAAGTT+TGG | 0.276510 | 5.3:-70236155 | MS.gene37855:CDS |
AGCCCTGAATTGCGGCTAAA+TGG | 0.280420 | 5.3:-70235242 | MS.gene37855:CDS |
AATTGTCAAGAGCCACCTTC+TGG | 0.285050 | 5.3:-70236979 | MS.gene37855:CDS |
GCAATCTCTTCTGCAAATAA+AGG | 0.286751 | 5.3:+70235140 | None:intergenic |
AGTACACTTTCCAAACTTAA+TGG | 0.287661 | 5.3:+70236181 | None:intergenic |
AAAGCTCCATGTAAACAATT+TGG | 0.292478 | 5.3:+70235311 | None:intergenic |
ATTACTCGAACATTACTTTC+AGG | 0.295763 | 5.3:+70234466 | None:intergenic |
CCTGGCTCCATTGGCGTCAT+TGG | 0.298516 | 5.3:+70236624 | None:intergenic |
TGATGTTGATATGGAGGATT+TGG | 0.299273 | 5.3:-70236851 | MS.gene37855:CDS |
GGAAAGGCCACCATTAAGTT+TGG | 0.300063 | 5.3:-70236191 | MS.gene37855:CDS |
GAATGTGTGTTTCACTCTTT+GGG | 0.305217 | 5.3:-70237026 | MS.gene37855:CDS |
CCGATTCATGAAAGGTTTGC+AGG | 0.307070 | 5.3:-70237084 | MS.gene37855:CDS |
ACTCCAACTTTATTGTCATC+TGG | 0.307981 | 5.3:-70235647 | MS.gene37855:CDS |
TGCAACCATGCCTGTGGTTA+AGG | 0.311326 | 5.3:-70229745 | MS.gene37855:CDS |
TTGAATTGGGTCAGGGTCTC+TGG | 0.314204 | 5.3:-70232862 | MS.gene37855:CDS |
AGTATACCTTGCCTTCAATA+TGG | 0.315312 | 5.3:-70233072 | MS.gene37855:CDS |
GTCTCAATACTATTTCTATA+TGG | 0.316640 | 5.3:-70234599 | MS.gene37855:CDS |
GCACAGGCCCACCAGTTTAA+AGG | 0.321460 | 5.3:-70236677 | MS.gene37855:CDS |
GGCCCTCATTGCAGATCTGC+TGG | 0.329584 | 5.3:+70233249 | None:intergenic |
AATCCATTTAGCCGCAATTC+AGG | 0.330297 | 5.3:+70235239 | None:intergenic |
ATTGGAAAGATGTTAAGTTT+TGG | 0.332835 | 5.3:-70235902 | MS.gene37855:CDS |
GATGTTGATATGGAGGATTT+GGG | 0.337632 | 5.3:-70236850 | MS.gene37855:CDS |
TCGATGATGTACCTCAATTA+TGG | 0.343681 | 5.3:-70232085 | MS.gene37855:CDS |
AACATTGTAGGTTATCTTCA+TGG | 0.346832 | 5.3:+70233441 | None:intergenic |
AATATCGGTTTGAAGAAATC+TGG | 0.347395 | 5.3:+70231857 | None:intergenic |
TCAAGTATCATTACAAAGTC+GGG | 0.348027 | 5.3:+70236406 | None:intergenic |
TCATTCTATGATCATTGTTA+TGG | 0.348730 | 5.3:-70233106 | MS.gene37855:CDS |
CAAGGAAACAGCTTCTTTCA+TGG | 0.355336 | 5.3:-70229812 | MS.gene37855:CDS |
AGCCAGTGTAGGTGGCAATT+TGG | 0.360862 | 5.3:-70236332 | MS.gene37855:CDS |
CCTGTGCCAGCCGTGTTTCT+CGG | 0.362059 | 5.3:+70236693 | None:intergenic |
TTTGTCGCTGCACTGGTTAT+CGG | 0.365984 | 5.3:-70236906 | MS.gene37855:CDS |
AATTTCCAAATATGATCCTT+TGG | 0.373997 | 5.3:-70237220 | MS.gene37855:CDS |
GAGGGCCCCTGGGGAAGTGC+AGG | 0.375620 | 5.3:-70233233 | MS.gene37855:CDS |
AACAGCTTACCGTTCAAGTT+TGG | 0.375902 | 5.3:-70235816 | MS.gene37855:CDS |
CATTACCTGCTTCAAGGACT+TGG | 0.377775 | 5.3:+70235621 | None:intergenic |
TAGTCAGAAACTTGCAGATA+TGG | 0.378413 | 5.3:-70234982 | MS.gene37855:CDS |
TACTTCAATAGCTTTAGATA+TGG | 0.382262 | 5.3:+70236459 | None:intergenic |
AAAGTTGTTGTGAATAATAC+TGG | 0.383435 | 5.3:-70236598 | MS.gene37855:CDS |
GGGTCTGTTGTTGTTGAAGT+TGG | 0.383716 | 5.3:-70232890 | MS.gene37855:CDS |
GCAGCTCCCGATTTAATGAT+TGG | 0.384823 | 5.3:+70235578 | None:intergenic |
AAGAAATGAGCTCTATCAAA+TGG | 0.387458 | 5.3:-70232616 | MS.gene37855:CDS |
AACTTGATCCATACCCTTTG+AGG | 0.388510 | 5.3:+70231177 | None:intergenic |
TGGAAAGCCAATCATTAAAT+CGG | 0.388993 | 5.3:-70235585 | MS.gene37855:CDS |
AAGATCAGAAAGGATCAATC+AGG | 0.390812 | 5.3:-70236505 | MS.gene37855:CDS |
GAGGCTGAAAAGGCTATTGC+AGG | 0.393419 | 5.3:-70236934 | MS.gene37855:CDS |
AGAAATTATGTCGCCCTGTC+AGG | 0.393516 | 5.3:-70233513 | MS.gene37855:CDS |
TTAACCACAGGCATGGTTGC+AGG | 0.394614 | 5.3:+70229747 | None:intergenic |
GTTCTGAAGCTCCTTTAAAC+TGG | 0.394660 | 5.3:+70236666 | None:intergenic |
AGGAAAGCAGCATTTAAGTA+TGG | 0.398894 | 5.3:+70236043 | None:intergenic |
AACTGAAGCAAAGTAGTTGA+TGG | 0.398984 | 5.3:+70238845 | None:intergenic |
TTAATGATTGGCTTTCCAAC+GGG | 0.404794 | 5.3:+70235590 | None:intergenic |
CACATAAAAGTTGGTTTCTC+CGG | 0.405609 | 5.3:+70235745 | None:intergenic |
TGACGCAACATTTCAGTTGC+GGG | 0.405630 | 5.3:-70229772 | MS.gene37855:CDS |
AAGTTGCCTCTGGATTTATT+CGG | 0.408682 | 5.3:-70236360 | MS.gene37855:CDS |
TCGAAAGACAGATATGATAA+TGG | 0.409902 | 5.3:-70233479 | MS.gene37855:CDS |
GAAGTCTCTTGGACAAAGTA+AGG | 0.416398 | 5.3:-70232781 | MS.gene37855:CDS |
CTGCCAACGATAAACCATTA+AGG | 0.419363 | 5.3:+70231299 | None:intergenic |
TGGAGGAATTGAATTGGGTC+AGG | 0.423133 | 5.3:-70232870 | MS.gene37855:CDS |
CAGAGGCAACTTTACTCATA+TGG | 0.429967 | 5.3:+70236371 | None:intergenic |
AGATCTGCAATGAGGGCCCC+TGG | 0.430497 | 5.3:-70233244 | MS.gene37855:CDS |
AGTCATGTTGTGAAGCAGTT+AGG | 0.431753 | 5.3:-70232694 | MS.gene37855:CDS |
GAAATTTAACATTCTTGTGC+TGG | 0.433011 | 5.3:+70236758 | None:intergenic |
TTTGAACATTAAACTGTTGA+GGG | 0.433694 | 5.3:+70231236 | None:intergenic |
TAGGCTTAGCTGCGATATCT+TGG | 0.436173 | 5.3:-70232675 | MS.gene37855:CDS |
TCAAGTAAAGACATTCCTAA+TGG | 0.437133 | 5.3:-70235203 | MS.gene37855:CDS |
CTCCAACTTTATTGTCATCT+GGG | 0.439075 | 5.3:-70235646 | MS.gene37855:CDS |
CGCTTCAAGAGTGTTAAACT+TGG | 0.439280 | 5.3:-70238806 | MS.gene37855:CDS |
GATATTCATTACCTGCTTCA+AGG | 0.440792 | 5.3:+70235615 | None:intergenic |
CTCCATTGGCGTCATTGGCA+TGG | 0.441000 | 5.3:+70236629 | None:intergenic |
GTAATGCAATTGTCTTCGTC+TGG | 0.443011 | 5.3:+70234553 | None:intergenic |
TACCGTTTCTGAGGCTGAAA+AGG | 0.443300 | 5.3:-70236944 | MS.gene37855:CDS |
TTCATCTTTAGGTACAATAG+TGG | 0.443890 | 5.3:+70235847 | None:intergenic |
TTATGAACAAAGAATTGAAA+TGG | 0.448199 | 5.3:-70233026 | MS.gene37855:CDS |
TCACCACCAAATTGTTTACA+TGG | 0.448915 | 5.3:-70235317 | MS.gene37855:CDS |
CGCAACTGAAATGTTGCGTC+AGG | 0.450090 | 5.3:+70229774 | None:intergenic |
AGTGTACTAACCATGTTATG+TGG | 0.452725 | 5.3:+70233331 | None:intergenic |
CATGTTGGTGATATATCAAA+AGG | 0.452940 | 5.3:-70234840 | MS.gene37855:CDS |
AGTAGTTGATGGATCAACTT+TGG | 0.453240 | 5.3:+70238856 | None:intergenic |
TGAAGTTGGAGGAATTGAAT+TGG | 0.453647 | 5.3:-70232876 | MS.gene37855:CDS |
AATGCAAAATCCTTCACAAA+AGG | 0.455224 | 5.3:+70235704 | None:intergenic |
ACTCATGTCTCACACTACTT+TGG | 0.457892 | 5.3:-70237170 | MS.gene37855:CDS |
TTGTAGAAAGATACCTGAAA+TGG | 0.457968 | 5.3:-70229704 | MS.gene37855:CDS |
CGATTTAGATACATCCTGAC+AGG | 0.458766 | 5.3:+70233499 | None:intergenic |
TTCAAGTATCATTACAAAGT+CGG | 0.460899 | 5.3:+70236405 | None:intergenic |
GCTTCTTTCATGGAGCAACT+TGG | 0.462636 | 5.3:-70229802 | MS.gene37855:CDS |
AAGAGTGAAACACACATTCC+AGG | 0.462764 | 5.3:+70237030 | None:intergenic |
AGTTTAACAGAATTAGTACT+TGG | 0.464285 | 5.3:-70232997 | MS.gene37855:CDS |
AATGATCCCTGCACTTCCCC+AGG | 0.464710 | 5.3:+70233226 | None:intergenic |
TGAAGATAACCTACAATGTT+GGG | 0.465491 | 5.3:-70233438 | MS.gene37855:CDS |
TCCTTCAGCATTTCCTTGAG+AGG | 0.469037 | 5.3:+70232638 | None:intergenic |
GAAGTTGGAGGAATTGAATT+GGG | 0.469203 | 5.3:-70232875 | MS.gene37855:CDS |
TGATGGAACTGGAAGTCTCT+TGG | 0.469321 | 5.3:-70232792 | MS.gene37855:CDS |
CCTGCAAACCTTTCATGAAT+CGG | 0.469701 | 5.3:+70237084 | None:intergenic |
TGTGAAATTCAGGTGAAACT+TGG | 0.471229 | 5.3:-70234622 | MS.gene37855:intron |
TACCGTTCAAGTTTGGCAGC+TGG | 0.475910 | 5.3:-70235809 | MS.gene37855:CDS |
TTCTTTAATAGCTGCTCTTG+TGG | 0.476362 | 5.3:+70229836 | None:intergenic |
TTGTTGGTTGCAGGTGGTTG+TGG | 0.477500 | 5.3:-70237258 | MS.gene37855:intron |
GGTCCATGATAGATGCTTGT+AGG | 0.479012 | 5.3:-70235988 | MS.gene37855:CDS |
ATTGTCAAGAGCCACCTTCT+GGG | 0.479149 | 5.3:-70236978 | MS.gene37855:CDS |
ATGAAGATAACCTACAATGT+TGG | 0.479256 | 5.3:-70233439 | MS.gene37855:CDS |
ATCCATTTAGCCGCAATTCA+GGG | 0.480081 | 5.3:+70235240 | None:intergenic |
TGCAGGTGAGGCTGTATTTG+TGG | 0.480256 | 5.3:-70235351 | MS.gene37855:intron |
CATCGTGTGCTTTCCTCAAA+GGG | 0.480446 | 5.3:-70231190 | MS.gene37855:intron |
GCTAACTTACTCCATATTGA+AGG | 0.482396 | 5.3:+70233061 | None:intergenic |
AAGATACCTGAAATGGAAGA+TGG | 0.482552 | 5.3:-70229697 | MS.gene37855:CDS |
ACCTGTCCTAAATCCACAGC+AGG | 0.484206 | 5.3:+70231807 | None:intergenic |
TTCCCAGATGACAATAAAGT+TGG | 0.484639 | 5.3:+70235644 | None:intergenic |
GAGTAATTACAAGAAGGGTC+GGG | 0.484682 | 5.3:-70234450 | MS.gene37855:CDS |
GATACCATCCTGCAGATTGA+AGG | 0.485211 | 5.3:-70231373 | MS.gene37855:intron |
CGAGCTTCTCCTAGACTGCT+TGG | 0.485941 | 5.3:-70236076 | MS.gene37855:CDS |
ACACTACTTTGGAGCATACA+TGG | 0.490044 | 5.3:-70237159 | MS.gene37855:CDS |
TGTTGTGAATAATACTGGTA+TGG | 0.492861 | 5.3:-70236593 | MS.gene37855:CDS |
AATGAGTAAACTCGGGGCAT+TGG | 0.495320 | 5.3:+70234515 | None:intergenic |
GAAGGCAAGGTATACTCAAA+AGG | 0.497702 | 5.3:+70233079 | None:intergenic |
CCGAGAAACACGGCTGGCAC+AGG | 0.498963 | 5.3:-70236693 | MS.gene37855:CDS |
ACTACTTACTGTGGACTCAA+TGG | 0.498968 | 5.3:-70236266 | MS.gene37855:CDS |
TCTGTTGTTGTTGAAGTTGG+AGG | 0.499663 | 5.3:-70232887 | MS.gene37855:CDS |
TCCGCAATCATAGATAATAT+CGG | 0.499964 | 5.3:+70231842 | None:intergenic |
CATATGAGTAAAGTTGCCTC+TGG | 0.500064 | 5.3:-70236370 | MS.gene37855:CDS |
GCATCGTGTGCTTTCCTCAA+AGG | 0.500192 | 5.3:-70231191 | MS.gene37855:CDS |
CGAGTAATTACAAGAAGGGT+CGG | 0.501180 | 5.3:-70234451 | MS.gene37855:CDS |
AAATGCTGCTTTCCTTGTTG+AGG | 0.501446 | 5.3:-70236035 | MS.gene37855:CDS |
ATATCCGTTCACATAAAAGT+TGG | 0.502679 | 5.3:+70235736 | None:intergenic |
GGGAACCTTTGTCGCTGCAC+TGG | 0.502740 | 5.3:-70236913 | MS.gene37855:CDS |
AGAGTCAGTTGATACACAAC+TGG | 0.504573 | 5.3:+70232950 | None:intergenic |
GCCCTCATTGCAGATCTGCT+GGG | 0.506175 | 5.3:+70233250 | None:intergenic |
TGAATGGCACACAATTTGAA+TGG | 0.507343 | 5.3:-70236234 | MS.gene37855:CDS |
GATACAGTGAGCTTGATTCA+AGG | 0.507611 | 5.3:-70232746 | MS.gene37855:CDS |
GCATGAAGAACCCCAATCCC+TGG | 0.509741 | 5.3:+70231341 | None:intergenic |
CTGGACGAAGGTGAAACAAA+TGG | 0.510407 | 5.3:-70232843 | MS.gene37855:CDS |
CAAATGGCTGCATTCGCCCT+TGG | 0.511901 | 5.3:-70232827 | MS.gene37855:CDS |
CACCAAATTGCCACCTACAC+TGG | 0.513059 | 5.3:+70236330 | None:intergenic |
AAGACAGATATGATAATGGC+TGG | 0.513909 | 5.3:-70233475 | MS.gene37855:CDS |
GGAAAGCCAATCATTAAATC+GGG | 0.514302 | 5.3:-70235584 | MS.gene37855:CDS |
ACATTGTAGGTTATCTTCAT+GGG | 0.514561 | 5.3:+70233442 | None:intergenic |
TTGAGGAAAGCACACGATGC+TGG | 0.515289 | 5.3:+70231194 | None:intergenic |
ATTTGAACATTAAACTGTTG+AGG | 0.518786 | 5.3:+70231235 | None:intergenic |
GATCTGCAATGAGGGCCCCT+GGG | 0.520233 | 5.3:-70233243 | MS.gene37855:CDS |
GTTAAACTTGGTTGTGGTGA+AGG | 0.520608 | 5.3:-70238794 | MS.gene37855:intron |
ACAATTCAATGTGATGGAAC+TGG | 0.522411 | 5.3:-70232803 | MS.gene37855:CDS |
TGTAAACAATTTGGTGGTGA+AGG | 0.522681 | 5.3:+70235320 | None:intergenic |
TGAAGCTCCTTTAAACTGGT+GGG | 0.523102 | 5.3:+70236670 | None:intergenic |
CCAATGACGCCAATGGAGCC+AGG | 0.524299 | 5.3:-70236624 | MS.gene37855:CDS |
GTGAAATTCAGGTGAAACTT+GGG | 0.524542 | 5.3:-70234621 | MS.gene37855:intron |
AGAAATGAGCTCTATCAAAT+GGG | 0.525671 | 5.3:-70232615 | MS.gene37855:CDS |
GTGTCTCCAAGTGAAAATTC+TGG | 0.526023 | 5.3:-70236013 | MS.gene37855:CDS |
CTGAAGCTCCTTTAAACTGG+TGG | 0.527833 | 5.3:+70236669 | None:intergenic |
CTGACTCTACGACCAACGCC+TGG | 0.528138 | 5.3:-70232935 | MS.gene37855:CDS |
CCCTGCTGTGGATTTAGGAC+AGG | 0.528247 | 5.3:-70231808 | MS.gene37855:intron |
TCAATGGTTCATATAATGAA+TGG | 0.528482 | 5.3:-70236250 | MS.gene37855:CDS |
AGAGTGAAACACACATTCCA+GGG | 0.528965 | 5.3:+70237031 | None:intergenic |
TGCTGCTGATGTTGATATGG+AGG | 0.529902 | 5.3:-70236857 | MS.gene37855:CDS |
GTAAAGACATTCCTAATGGT+GGG | 0.530238 | 5.3:-70235199 | MS.gene37855:CDS |
TGATAAGTATATTGATCTGA+AGG | 0.530273 | 5.3:-70236545 | MS.gene37855:CDS |
CGATTCATGAAAGGTTTGCA+GGG | 0.535623 | 5.3:-70237083 | MS.gene37855:CDS |
AGGGCCCCTGGGGAAGTGCA+GGG | 0.536468 | 5.3:-70233232 | MS.gene37855:CDS |
CTTGAGATATTGGTCAATGC+TGG | 0.536646 | 5.3:-70233382 | MS.gene37855:CDS |
TCCCAGCAGATCTGCAATGA+GGG | 0.536774 | 5.3:-70233251 | MS.gene37855:CDS |
CTGACGCAACATTTCAGTTG+CGG | 0.537827 | 5.3:-70229773 | MS.gene37855:CDS |
ATTTGAATGGATAACATTGG+AGG | 0.537974 | 5.3:-70236221 | MS.gene37855:CDS |
TACATCATCGAGTTATTGTC+GGG | 0.539664 | 5.3:+70232097 | None:intergenic |
AGGGCATTTCCAAGCAGTCT+AGG | 0.540398 | 5.3:+70236067 | None:intergenic |
CTCAAAAGTTACCGTTTCTG+AGG | 0.540572 | 5.3:-70236953 | MS.gene37855:CDS |
AGTAATTACAAGAAGGGTCG+GGG | 0.541016 | 5.3:-70234449 | MS.gene37855:CDS |
GGGTTTCATGCTTCTCAATG+TGG | 0.544526 | 5.3:-70237063 | MS.gene37855:CDS |
GTACATCATCGAGTTATTGT+CGG | 0.545763 | 5.3:+70232096 | None:intergenic |
TCTACTATAGCAAGATGCCT+TGG | 0.545821 | 5.3:-70234493 | MS.gene37855:CDS |
CCTAATGGTGGGGAAAACAT+TGG | 0.549610 | 5.3:-70235188 | MS.gene37855:CDS |
ACAATTTGAATGGATAACAT+TGG | 0.550782 | 5.3:-70236224 | MS.gene37855:CDS |
GGAGCTGCGCTACAAGCTAC+AGG | 0.550843 | 5.3:-70235563 | MS.gene37855:intron |
GCATCTTCAACAGATAGAAT+AGG | 0.551169 | 5.3:+70234912 | None:intergenic |
TCCTTTGGTTGACAGAGTTG+AGG | 0.551997 | 5.3:-70237205 | MS.gene37855:CDS |
GGGAACCAAGTCCTTGAAGC+AGG | 0.552073 | 5.3:-70235626 | MS.gene37855:CDS |
TATCGTTGGCAGATGGCACA+TGG | 0.552385 | 5.3:-70231288 | MS.gene37855:CDS |
TGTTCGAGTAATTACAAGAA+GGG | 0.552792 | 5.3:-70234455 | MS.gene37855:CDS |
AGTAAAGACATTCCTAATGG+TGG | 0.554617 | 5.3:-70235200 | MS.gene37855:CDS |
ACGGAGTCTCAACCCTGCTG+TGG | 0.554639 | 5.3:-70231820 | MS.gene37855:CDS |
CAGCCTACAAGCATCTATCA+TGG | 0.555012 | 5.3:+70235985 | None:intergenic |
GTGTACTAACCATGTTATGT+GGG | 0.556523 | 5.3:+70233332 | None:intergenic |
AATGGTTTATCGTTGGCAGA+TGG | 0.556739 | 5.3:-70231295 | MS.gene37855:CDS |
ATACAGTGAGCTTGATTCAA+GGG | 0.557138 | 5.3:-70232745 | MS.gene37855:CDS |
AAGAGTGTTAAACTTGGTTG+TGG | 0.557403 | 5.3:-70238800 | MS.gene37855:CDS |
TTTAATGATTGGCTTTCCAA+CGG | 0.558146 | 5.3:+70235589 | None:intergenic |
CTTGGCACAATTCAATGTGA+TGG | 0.559176 | 5.3:-70232809 | MS.gene37855:CDS |
AGACCTTAATGGTTTATCGT+TGG | 0.559775 | 5.3:-70231302 | MS.gene37855:CDS |
ACTGAAGCTGCTAGAAGTAA+AGG | 0.559795 | 5.3:+70229867 | None:intergenic |
GGCATTGGAAATAGCAAACA+AGG | 0.561122 | 5.3:-70237114 | MS.gene37855:CDS |
GCTGCGATATCTTGGTTGAG+AGG | 0.563095 | 5.3:-70232667 | MS.gene37855:CDS |
ATAACAACAAGTGAAGGCAT+TGG | 0.565209 | 5.3:-70237129 | MS.gene37855:CDS |
GATTGCATCCGATTCATGAA+AGG | 0.565763 | 5.3:-70237092 | MS.gene37855:CDS |
AAGCAGCATTTAAGTATGGA+AGG | 0.566041 | 5.3:+70236047 | None:intergenic |
TGAGGGATAGTGTCTATCGT+AGG | 0.567492 | 5.3:+70231253 | None:intergenic |
CCTCTAGTTGAAAATACTGC+CGG | 0.568030 | 5.3:-70235764 | MS.gene37855:CDS |
CTGGAGAAAAGAAGAAAGCA+AGG | 0.568437 | 5.3:-70236815 | MS.gene37855:CDS |
ATCACATTGAATTGTGCCAA+GGG | 0.569331 | 5.3:+70232811 | None:intergenic |
AACCATGCCAATGACGCCAA+TGG | 0.571845 | 5.3:-70236631 | MS.gene37855:CDS |
TCCTCAACTCTGTCAACCAA+AGG | 0.571934 | 5.3:+70237204 | None:intergenic |
GAAGAGATTGCAAGATGTGT+CGG | 0.572072 | 5.3:-70235128 | MS.gene37855:CDS |
CATCACATTGAATTGTGCCA+AGG | 0.572457 | 5.3:+70232810 | None:intergenic |
GCCTCTCAAGGAAATGCTGA+AGG | 0.574410 | 5.3:-70232639 | MS.gene37855:CDS |
GCTCCATGTAAACAATTTGG+TGG | 0.574472 | 5.3:+70235314 | None:intergenic |
CATTGGAGGAATTTCTGGAA+AGG | 0.575220 | 5.3:-70236207 | MS.gene37855:CDS |
TTACTGCAGCACCATAATTG+AGG | 0.576290 | 5.3:+70232074 | None:intergenic |
CTTACTCCATATTGAAGGCA+AGG | 0.576357 | 5.3:+70233066 | None:intergenic |
TGCAGCAATCCCACATAACA+TGG | 0.579116 | 5.3:-70233341 | MS.gene37855:CDS |
TTTCTCTACCCAAAACATGT+TGG | 0.581161 | 5.3:-70234855 | MS.gene37855:CDS |
TATAGTAGAATGAGTAAACT+CGG | 0.581864 | 5.3:+70234507 | None:intergenic |
ATACTCCTTATCCTTGCCAG+TGG | 0.582025 | 5.3:+70235272 | None:intergenic |
GAGGGATAGTGTCTATCGTA+GGG | 0.582399 | 5.3:+70231254 | None:intergenic |
AGATACCTGAAATGGAAGAT+GGG | 0.584167 | 5.3:-70229696 | MS.gene37855:CDS |
CCACTGAGTTCCTTAACCAC+AGG | 0.587109 | 5.3:+70229735 | None:intergenic |
ATGTTGATATGGAGGATTTG+GGG | 0.587628 | 5.3:-70236849 | MS.gene37855:CDS |
CGGAATACAGCCAGTGTAGG+TGG | 0.588893 | 5.3:-70236340 | MS.gene37855:CDS |
GGTAATGAATATCACCCCGT+TGG | 0.591385 | 5.3:-70235605 | MS.gene37855:CDS |
ATGATCCCTGCACTTCCCCA+GGG | 0.591389 | 5.3:+70233227 | None:intergenic |
GATAACCAGTGCAGCGACAA+AGG | 0.591470 | 5.3:+70236908 | None:intergenic |
TGAGCTCTCAAAGATCAGAA+AGG | 0.591501 | 5.3:-70236515 | MS.gene37855:CDS |
ATAGTAGAATGAGTAAACTC+GGG | 0.592598 | 5.3:+70234508 | None:intergenic |
GTGGAAATAGATCTACTGAC+AGG | 0.592865 | 5.3:-70231885 | MS.gene37855:CDS |
AATGTTCAAATTCTCAACAG+TGG | 0.594277 | 5.3:-70231223 | MS.gene37855:CDS |
GGTTAAGGAACTCAGTGGAC+TGG | 0.594338 | 5.3:-70229730 | MS.gene37855:CDS |
ATCTGCAATGAGGGCCCCTG+GGG | 0.594670 | 5.3:-70233242 | MS.gene37855:CDS |
CACTTGGAGACACCTCAACA+AGG | 0.596764 | 5.3:+70236023 | None:intergenic |
TAAAGACATTCCTAATGGTG+GGG | 0.600005 | 5.3:-70235198 | MS.gene37855:CDS |
TCTCCAAGTGAAAATTCTGG+TGG | 0.600746 | 5.3:-70236010 | MS.gene37855:CDS |
TGAGAGGTTAAAGCCTCTCA+AGG | 0.602913 | 5.3:-70232651 | MS.gene37855:CDS |
TTCAATATCGTAATCGACAA+CGG | 0.605573 | 5.3:+70234947 | None:intergenic |
ATATGATAATGGCTGGAGGA+AGG | 0.605624 | 5.3:-70233468 | MS.gene37855:CDS |
GAGCAGCTATTAAAGAAGCA+AGG | 0.606084 | 5.3:-70229830 | MS.gene37855:CDS |
TTCATATCCTCCGAGAAACA+CGG | 0.608134 | 5.3:-70236703 | MS.gene37855:CDS |
GTTGTGAATAATACTGGTAT+GGG | 0.608344 | 5.3:-70236592 | MS.gene37855:CDS |
GGAGGAATTGAATTGGGTCA+GGG | 0.609458 | 5.3:-70232869 | MS.gene37855:CDS |
AGATCAGAAAGGATCAATCA+GGG | 0.609735 | 5.3:-70236504 | MS.gene37855:CDS |
GGTCAATGCTGGTATATATG+TGG | 0.612012 | 5.3:-70233371 | MS.gene37855:CDS |
ATTCGGAATACAGCCAGTGT+AGG | 0.612101 | 5.3:-70236343 | MS.gene37855:CDS |
TGTTCAATAACAACAAGTGA+AGG | 0.612214 | 5.3:-70237135 | MS.gene37855:CDS |
TACAGTGAGCTTGATTCAAG+GGG | 0.613500 | 5.3:-70232744 | MS.gene37855:CDS |
GAGTTCCTTAACCACAGGCA+TGG | 0.614569 | 5.3:+70229740 | None:intergenic |
AGCCAGCTGCCAAACTTGAA+CGG | 0.616315 | 5.3:+70235807 | None:intergenic |
ATGTTCGAGTAATTACAAGA+AGG | 0.616344 | 5.3:-70234456 | MS.gene37855:CDS |
CAAGCAGTCTAGGAGAAGCT+CGG | 0.616375 | 5.3:+70236077 | None:intergenic |
ACCGATATTATCTATGATTG+CGG | 0.616662 | 5.3:-70231843 | MS.gene37855:CDS |
TGTTACAATACTACTTACTG+TGG | 0.617166 | 5.3:-70236275 | MS.gene37855:CDS |
ATCCCAGCAGATCTGCAATG+AGG | 0.619233 | 5.3:-70233252 | MS.gene37855:CDS |
GATAAGTATATTGATCTGAA+GGG | 0.620052 | 5.3:-70236544 | MS.gene37855:CDS |
CAAGTATCATTACAAAGTCG+GGG | 0.621029 | 5.3:+70236407 | None:intergenic |
ACAAAAGAACAAGTTTCCCT+CGG | 0.622304 | 5.3:-70236302 | MS.gene37855:CDS |
AAGTCTCTTGGACAAAGTAA+GGG | 0.622503 | 5.3:-70232780 | MS.gene37855:CDS |
TAGTATTGTAACAATATCCG+AGG | 0.623581 | 5.3:+70236285 | None:intergenic |
TAAAACTCAGCCCTGAATTG+CGG | 0.624714 | 5.3:-70235250 | MS.gene37855:CDS |
AGCAGCATTTAAGTATGGAA+GGG | 0.632691 | 5.3:+70236048 | None:intergenic |
TGGTGATATATCAAAAGGAA+TGG | 0.635108 | 5.3:-70234835 | MS.gene37855:CDS |
CTCCAAGTGAAAATTCTGGT+GGG | 0.636276 | 5.3:-70236009 | MS.gene37855:CDS |
TTGTGCTGGTGCTCATATCG+AGG | 0.637322 | 5.3:+70236772 | None:intergenic |
TTATGGTGCTGCAGTAAGTG+AGG | 0.638457 | 5.3:-70232068 | MS.gene37855:intron |
AGGCTGAAAAGGCTATTGCA+GGG | 0.638825 | 5.3:-70236933 | MS.gene37855:CDS |
TGTAGGTGGCAATTTGGTGA+TGG | 0.639172 | 5.3:-70236326 | MS.gene37855:CDS |
TCTTCAACAGATAGAATAGG+TGG | 0.642877 | 5.3:+70234915 | None:intergenic |
GTAATTACAAGAAGGGTCGG+GGG | 0.643064 | 5.3:-70234448 | MS.gene37855:CDS |
TATCCTCCGAGAAACACGGC+TGG | 0.645513 | 5.3:-70236699 | MS.gene37855:CDS |
ACACTTTCCAAACTTAATGG+TGG | 0.647934 | 5.3:+70236184 | None:intergenic |
GGTTCCTGCAACCATGCCTG+TGG | 0.649210 | 5.3:-70229751 | MS.gene37855:CDS |
GAAGCTGCTAGAAGTAAAGG+CGG | 0.651777 | 5.3:+70229870 | None:intergenic |
AAGCTCGGTAAGTTTCAAAG+TGG | 0.657473 | 5.3:+70236092 | None:intergenic |
GGGTCAGGGTCTCTGGACGA+AGG | 0.659286 | 5.3:-70232855 | MS.gene37855:CDS |
GATTTAGATACATCCTGACA+GGG | 0.659769 | 5.3:+70233500 | None:intergenic |
TCACAAGATTCTATCTGCTG+AGG | 0.661889 | 5.3:-70234802 | MS.gene37855:intron |
TAATGATTGGCTTTCCAACG+GGG | 0.662171 | 5.3:+70235591 | None:intergenic |
AGTATTGTAACAATATCCGA+GGG | 0.668326 | 5.3:+70236286 | None:intergenic |
CCTGAAATGGAAGATGGGCA+CGG | 0.670506 | 5.3:-70229691 | MS.gene37855:CDS |
CATTACTTTCAGGAATACCA+AGG | 0.671155 | 5.3:+70234476 | None:intergenic |
GGATATTATAAAGATAACGA+TGG | 0.673451 | 5.3:-70236571 | MS.gene37855:CDS |
ATATTATCTATGATTGCGGA+CGG | 0.674443 | 5.3:-70231839 | MS.gene37855:CDS |
CAGTGAGCTTGATTCAAGGG+GGG | 0.676154 | 5.3:-70232742 | MS.gene37855:CDS |
ACAGATATGATAATGGCTGG+AGG | 0.683979 | 5.3:-70233472 | MS.gene37855:CDS |
GTGCCAGCCGTGTTTCTCGG+AGG | 0.685945 | 5.3:+70236696 | None:intergenic |
TAGTAGAATGAGTAAACTCG+GGG | 0.696695 | 5.3:+70234509 | None:intergenic |
TTCACAACATGACTCTGATG+TGG | 0.702123 | 5.3:+70232703 | None:intergenic |
ACAGTGAGCTTGATTCAAGG+GGG | 0.707458 | 5.3:-70232743 | MS.gene37855:CDS |
CCTGTCCTAAATCCACAGCA+GGG | 0.710740 | 5.3:+70231808 | None:intergenic |
TGTATTCCGAATAAATCCAG+AGG | 0.711856 | 5.3:+70236354 | None:intergenic |
TGATCCCTGCACTTCCCCAG+GGG | 0.722809 | 5.3:+70233228 | None:intergenic |
GAGTGAAACACACATTCCAG+GGG | 0.739085 | 5.3:+70237032 | None:intergenic |
CCTGTGGTTAAGGAACTCAG+TGG | 0.744837 | 5.3:-70229735 | MS.gene37855:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 70229686 | 70238954 | 70229686 | ID=MS.gene37855 |
chr5.3 | mRNA | 70229686 | 70238954 | 70229686 | ID=MS.gene37855.t1;Parent=MS.gene37855 |
chr5.3 | exon | 70238795 | 70238954 | 70238795 | ID=MS.gene37855.t1.exon1;Parent=MS.gene37855.t1 |
chr5.3 | CDS | 70238795 | 70238954 | 70238795 | ID=cds.MS.gene37855.t1;Parent=MS.gene37855.t1 |
chr5.3 | exon | 70235564 | 70237267 | 70235564 | ID=MS.gene37855.t1.exon2;Parent=MS.gene37855.t1 |
chr5.3 | CDS | 70235564 | 70237267 | 70235564 | ID=cds.MS.gene37855.t1;Parent=MS.gene37855.t1 |
chr5.3 | exon | 70235109 | 70235368 | 70235109 | ID=MS.gene37855.t1.exon3;Parent=MS.gene37855.t1 |
chr5.3 | CDS | 70235109 | 70235368 | 70235109 | ID=cds.MS.gene37855.t1;Parent=MS.gene37855.t1 |
chr5.3 | exon | 70234803 | 70235012 | 70234803 | ID=MS.gene37855.t1.exon4;Parent=MS.gene37855.t1 |
chr5.3 | CDS | 70234803 | 70235012 | 70234803 | ID=cds.MS.gene37855.t1;Parent=MS.gene37855.t1 |
chr5.3 | exon | 70234414 | 70234632 | 70234414 | ID=MS.gene37855.t1.exon5;Parent=MS.gene37855.t1 |
chr5.3 | CDS | 70234414 | 70234632 | 70234414 | ID=cds.MS.gene37855.t1;Parent=MS.gene37855.t1 |
chr5.3 | exon | 70232598 | 70233563 | 70232598 | ID=MS.gene37855.t1.exon6;Parent=MS.gene37855.t1 |
chr5.3 | CDS | 70232598 | 70233563 | 70232598 | ID=cds.MS.gene37855.t1;Parent=MS.gene37855.t1 |
chr5.3 | exon | 70232069 | 70232164 | 70232069 | ID=MS.gene37855.t1.exon7;Parent=MS.gene37855.t1 |
chr5.3 | CDS | 70232069 | 70232164 | 70232069 | ID=cds.MS.gene37855.t1;Parent=MS.gene37855.t1 |
chr5.3 | exon | 70231809 | 70231907 | 70231809 | ID=MS.gene37855.t1.exon8;Parent=MS.gene37855.t1 |
chr5.3 | CDS | 70231809 | 70231907 | 70231809 | ID=cds.MS.gene37855.t1;Parent=MS.gene37855.t1 |
chr5.3 | exon | 70231191 | 70231380 | 70231191 | ID=MS.gene37855.t1.exon9;Parent=MS.gene37855.t1 |
chr5.3 | CDS | 70231191 | 70231380 | 70231191 | ID=cds.MS.gene37855.t1;Parent=MS.gene37855.t1 |
chr5.3 | exon | 70229686 | 70229903 | 70229686 | ID=MS.gene37855.t1.exon10;Parent=MS.gene37855.t1 |
chr5.3 | CDS | 70229686 | 70229903 | 70229686 | ID=cds.MS.gene37855.t1;Parent=MS.gene37855.t1 |
Gene Sequence |
Protein sequence |