Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37856.t1 | XP_024640456.1 | 96.9 | 1375 | 38 | 2 | 1 | 1374 | 1 | 1372 | 0.00E+00 | 2642.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37856.t1 | Q7G9P4 | 60.5 | 1363 | 498 | 11 | 14 | 1371 | 3 | 1329 | 0.0e+00 | 1634.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37856.t1 | A0A396I152 | 96.9 | 1375 | 38 | 2 | 1 | 1374 | 1 | 1372 | 0.0e+00 | 2642.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37856 | MS.gene31092 | PPI |
| MS.gene45551 | MS.gene37856 | PPI |
| MS.gene052054 | MS.gene37856 | PPI |
| MS.gene78384 | MS.gene37856 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37856.t1 | MTR_5g087390 | 95.852 | 1374 | 39 | 2 | 1 | 1374 | 1 | 1356 | 0.0 | 2719 |
| MS.gene37856.t1 | MTR_5g087410 | 78.561 | 1376 | 283 | 9 | 1 | 1371 | 1 | 1369 | 0.0 | 2176 |
| MS.gene37856.t1 | MTR_5g087410 | 77.822 | 1249 | 266 | 8 | 1 | 1245 | 1 | 1242 | 0.0 | 1946 |
| MS.gene37856.t1 | MTR_2g098030 | 31.044 | 1427 | 812 | 41 | 1 | 1347 | 1 | 1335 | 5.61e-168 | 539 |
| MS.gene37856.t1 | MTR_2g098030 | 31.052 | 1417 | 806 | 39 | 10 | 1347 | 15 | 1339 | 1.35e-167 | 538 |
| MS.gene37856.t1 | MTR_2g098030 | 30.435 | 1334 | 758 | 38 | 93 | 1347 | 3 | 1245 | 1.50e-158 | 511 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37856.t1 | AT2G27150 | 60.058 | 1372 | 489 | 12 | 14 | 1371 | 3 | 1329 | 0.0 | 1657 |
| MS.gene37856.t1 | AT2G27150 | 60.058 | 1372 | 489 | 12 | 14 | 1371 | 3 | 1329 | 0.0 | 1657 |
| MS.gene37856.t1 | AT3G43600 | 59.956 | 1366 | 488 | 16 | 13 | 1371 | 2 | 1315 | 0.0 | 1657 |
| MS.gene37856.t1 | AT1G04580 | 59.021 | 1369 | 509 | 13 | 14 | 1370 | 6 | 1334 | 0.0 | 1644 |
| MS.gene37856.t1 | AT5G20960 | 58.606 | 1377 | 532 | 17 | 8 | 1373 | 15 | 1364 | 0.0 | 1603 |
| MS.gene37856.t1 | AT5G20960 | 58.606 | 1377 | 532 | 17 | 8 | 1373 | 15 | 1364 | 0.0 | 1603 |
| MS.gene37856.t1 | AT2G27150 | 58.665 | 1258 | 461 | 12 | 128 | 1371 | 1 | 1213 | 0.0 | 1499 |
| MS.gene37856.t1 | AT2G27150 | 58.665 | 1258 | 461 | 12 | 128 | 1371 | 1 | 1213 | 0.0 | 1499 |
| MS.gene37856.t1 | AT2G27150 | 58.492 | 1207 | 442 | 12 | 14 | 1206 | 3 | 1164 | 0.0 | 1410 |
| MS.gene37856.t1 | AT2G27150 | 56.725 | 1093 | 414 | 12 | 128 | 1206 | 1 | 1048 | 0.0 | 1250 |
| MS.gene37856.t1 | AT4G34890 | 30.737 | 1412 | 822 | 34 | 9 | 1347 | 12 | 1340 | 1.71e-166 | 535 |
| MS.gene37856.t1 | AT4G34900 | 30.895 | 1408 | 829 | 36 | 7 | 1347 | 2 | 1332 | 1.76e-161 | 521 |
| MS.gene37856.t1 | AT4G34900 | 30.333 | 1322 | 778 | 35 | 93 | 1347 | 3 | 1248 | 9.65e-152 | 493 |
| MS.gene37856.t1 | AT4G34900 | 29.250 | 1200 | 728 | 31 | 7 | 1158 | 2 | 1128 | 3.27e-122 | 410 |
| MS.gene37856.t1 | AT1G02590 | 64.000 | 50 | 18 | 0 | 1190 | 1239 | 26 | 75 | 1.00e-16 | 77.0 |
Find 294 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGGGTTGAACTCTTTC+TGG | 0.120155 | 5.3:-70221015 | MS.gene37856:CDS |
| GATAACATTGGAGGAATTTC+TGG | 0.152351 | 5.3:-70220393 | MS.gene37856:CDS |
| AATATCCGTTTGAAGAAATT+TGG | 0.175026 | 5.3:+70216375 | None:intergenic |
| ATTGGAGCAAAGACAATATT+TGG | 0.188110 | 5.3:-70219239 | MS.gene37856:CDS |
| AGAAGGGTTGGAGGAGGTTT+TGG | 0.196325 | 5.3:-70218472 | MS.gene37856:CDS |
| GTCTCAATACTATTTCTATT+TGG | 0.200760 | 5.3:-70218632 | MS.gene37856:CDS |
| GATATATCACCAACATGTTT+TGG | 0.235051 | 5.3:+70218897 | None:intergenic |
| TCGATGATTTACGTTAATTA+TGG | 0.248840 | 5.3:-70216608 | MS.gene37856:CDS |
| CTCAACCCTGCTGTGGATTT+AGG | 0.252324 | 5.3:-70216331 | MS.gene37856:CDS |
| CCTGCAAATCTTTCATGAAT+TGG | 0.265978 | 5.3:+70221268 | None:intergenic |
| TTGAAATTGGTCAGGGTCTC+TGG | 0.269726 | 5.3:-70217428 | MS.gene37856:CDS |
| CCAATTCATGAAAGATTTGC+AGG | 0.271981 | 5.3:-70221268 | MS.gene37856:CDS |
| GATCAATCAGGGATTGAAAT+TGG | 0.273893 | 5.3:-70220674 | MS.gene37856:CDS |
| AAGCATTAAAATTCCAAGTT+TGG | 0.276510 | 5.3:-70220336 | MS.gene37856:CDS |
| AGTACACTTTCCAAACTTAA+TGG | 0.287661 | 5.3:+70220362 | None:intergenic |
| GGAAAGACCACCATTAAGTT+TGG | 0.289701 | 5.3:-70220372 | MS.gene37856:CDS |
| GAATATGAAACAGACATTAA+TGG | 0.295549 | 5.3:-70215851 | MS.gene37856:CDS |
| ATTACTCGAACATTACTTTC+AGG | 0.295763 | 5.3:+70218499 | None:intergenic |
| TGATGTTGATATGGAGGATT+TGG | 0.299273 | 5.3:-70221032 | MS.gene37856:CDS |
| GAAGTTGGTGGAATTGAAAT+TGG | 0.302104 | 5.3:-70217441 | MS.gene37856:CDS |
| ACTTGAACGGTAAGTTGTTT+TGG | 0.304069 | 5.3:+70220001 | None:intergenic |
| TATGCTCCATGCAGGCAATT+TGG | 0.305026 | 5.3:+70219380 | None:intergenic |
| ATTCCAACATTATTGTCATC+TGG | 0.315224 | 5.3:-70219828 | MS.gene37856:CDS |
| AGTATACCTTGCCTTCAATA+TGG | 0.315312 | 5.3:-70217638 | MS.gene37856:CDS |
| GGAGCTGCACTTCAAGCTTC+AGG | 0.315532 | 5.3:-70219744 | MS.gene37856:intron |
| TTTGTCGCTGCACTGGTTAT+CGG | 0.322623 | 5.3:-70221087 | MS.gene37856:CDS |
| GATGCTTGTAGGCTGTCTTT+TGG | 0.335416 | 5.3:-70220158 | MS.gene37856:CDS |
| GATGTTGATATGGAGGATTT+GGG | 0.337632 | 5.3:-70221031 | MS.gene37856:CDS |
| TTTACCACGGGCATGGTTGC+AGG | 0.340431 | 5.3:+70215056 | None:intergenic |
| GGAATGTGTGTTTCACTCTT+CGG | 0.349354 | 5.3:-70221211 | MS.gene37856:CDS |
| GAATGTGTGTTTCACTCTTC+GGG | 0.349400 | 5.3:-70221210 | MS.gene37856:CDS |
| GTAATCTCTTCTGCAAATAA+AGG | 0.352366 | 5.3:+70219209 | None:intergenic |
| CAAGGAAACAGCTTCTTTCA+TGG | 0.355336 | 5.3:-70215121 | MS.gene37856:CDS |
| GGAAAAGCTGCAGGAAGAAA+TGG | 0.356051 | 5.3:-70217196 | MS.gene37856:CDS |
| TGCAAAATCCAGATGAAACT+TGG | 0.357376 | 5.3:-70218655 | MS.gene37856:intron |
| AATCTCAAAATATGATCCTT+TGG | 0.359159 | 5.3:-70221404 | MS.gene37856:CDS |
| AGCCAGTGTAGGTGGCAATT+TGG | 0.360862 | 5.3:-70220513 | MS.gene37856:CDS |
| AAGTTGCCTCTGGGTTTATT+CGG | 0.362138 | 5.3:-70220541 | MS.gene37856:CDS |
| TGGAAAGCCAATCATTAAAT+CGG | 0.366628 | 5.3:-70219766 | MS.gene37856:CDS |
| AATTGTCAAGAGCCACCTTC+CGG | 0.369590 | 5.3:-70221160 | MS.gene37856:CDS |
| TCGAAAGACTGATATGATAA+TGG | 0.369734 | 5.3:-70218045 | MS.gene37856:CDS |
| TGATTCAACATTTGAGTTAC+GGG | 0.370224 | 5.3:-70215081 | MS.gene37856:CDS |
| GCAGCTCCCGATTTAATGAT+TGG | 0.373083 | 5.3:+70219759 | None:intergenic |
| AGAAATTATGCCGCCCTGTC+AGG | 0.374185 | 5.3:-70218079 | MS.gene37856:CDS |
| GGTTCTGTTGTTGTTGAAGT+TGG | 0.374332 | 5.3:-70217456 | MS.gene37856:CDS |
| GTTCTGAAGCTCCTTTATAC+TGG | 0.374726 | 5.3:+70220847 | None:intergenic |
| TAGTCAGAAACTTGCAGATA+TGG | 0.378413 | 5.3:-70219033 | MS.gene37856:CDS |
| TTGACAATTAGTCTTCTTCT+CGG | 0.382184 | 5.3:+70221174 | None:intergenic |
| TCATTCTATGAGCATTCTTC+AGG | 0.386161 | 5.3:-70217672 | MS.gene37856:CDS |
| GAGGGGTCCTGGGGAACTAC+AGG | 0.388116 | 5.3:-70217799 | MS.gene37856:CDS |
| GACACTGTATGTTATCTTCA+TGG | 0.389394 | 5.3:+70218007 | None:intergenic |
| AAGATCAGAAAGGATCAATC+AGG | 0.390812 | 5.3:-70220686 | MS.gene37856:CDS |
| GAGGCTGAAAAGGCTATTGC+AGG | 0.393419 | 5.3:-70221115 | MS.gene37856:CDS |
| TACTGTTTCTGAGGCTGAAA+AGG | 0.396477 | 5.3:-70221125 | MS.gene37856:CDS |
| AGGAAAGCAGCATTTAAGTA+TGG | 0.398894 | 5.3:+70220224 | None:intergenic |
| ACCCCTCATTGCAGATCTAC+TGG | 0.401354 | 5.3:+70217815 | None:intergenic |
| TGTTGCAGCTACACTTTCAA+TGG | 0.404821 | 5.3:-70217745 | MS.gene37856:CDS |
| CTGATTCAACATTTGAGTTA+CGG | 0.405590 | 5.3:-70215082 | MS.gene37856:CDS |
| CGTAACTCAAATGTTGAATC+AGG | 0.407461 | 5.3:+70215083 | None:intergenic |
| GATATTCATTTCCTGCTTCA+AGG | 0.407562 | 5.3:+70219796 | None:intergenic |
| GTGGGAGACACTTATCCTTC+AGG | 0.408136 | 5.3:-70217163 | MS.gene37856:intron |
| AGTTCAAAATCCTTCGCATA+AGG | 0.413938 | 5.3:+70219885 | None:intergenic |
| TAGGCTTAGCTGCAATATCT+TGG | 0.415260 | 5.3:-70217241 | MS.gene37856:CDS |
| GAAGTCTCTTGGACAAAGTA+AGG | 0.416398 | 5.3:-70217347 | MS.gene37856:CDS |
| TGAGGGATAGTGTCTATTGT+AGG | 0.419091 | 5.3:+70215791 | None:intergenic |
| TCTACTATTGCAAGATGCTT+AGG | 0.421211 | 5.3:-70218526 | MS.gene37856:CDS |
| ATTGTCAAGAGCCACCTTCC+GGG | 0.421738 | 5.3:-70221159 | MS.gene37856:CDS |
| TGGTGGAATTGAAATTGGTC+AGG | 0.421825 | 5.3:-70217436 | MS.gene37856:CDS |
| TACTTCAATAGCTTTAGATA+TGG | 0.423254 | 5.3:+70220640 | None:intergenic |
| TGGAGACCGTCTAGCCTTTG+TGG | 0.424392 | 5.3:-70219177 | MS.gene37856:intron |
| AAAGTTGTCGCGAATAATAC+TGG | 0.427344 | 5.3:-70220779 | MS.gene37856:CDS |
| TTTCAACATTAAACTGTTGA+GGG | 0.428542 | 5.3:+70215774 | None:intergenic |
| GAAATTTAACATTCTTGTGC+AGG | 0.433181 | 5.3:+70220939 | None:intergenic |
| TGCAACCATGCCCGTGGTAA+AGG | 0.434097 | 5.3:-70215054 | MS.gene37856:CDS |
| AGATCTGCAATGAGGGGTCC+TGG | 0.434482 | 5.3:-70217810 | MS.gene37856:CDS |
| GCATTGCCACTTAGCATACT+TGG | 0.441127 | 5.3:-70217903 | MS.gene37856:CDS |
| GCAGAGGCCCACCAGTATAA+AGG | 0.441192 | 5.3:-70220858 | MS.gene37856:CDS |
| ACAATTCAATGTGATGGAAC+TGG | 0.445668 | 5.3:-70217369 | MS.gene37856:CDS |
| TTGAACTCTTTCTGGAGAAA+AGG | 0.447977 | 5.3:-70221007 | MS.gene37856:CDS |
| AATTCAAGCAAAGTGGTTGA+TGG | 0.450104 | 5.3:+70222762 | None:intergenic |
| AACCATTAAAAGTACATCTT+CGG | 0.450592 | 5.3:-70220312 | MS.gene37856:CDS |
| TTGTAGAAAGATACTTGAAA+TGG | 0.450613 | 5.3:-70215013 | MS.gene37856:CDS |
| CAGAGGCAACTTTACTCATA+TGG | 0.450721 | 5.3:+70220552 | None:intergenic |
| TTATTTGCAGAAGAGATTAC+CGG | 0.452203 | 5.3:-70219206 | MS.gene37856:CDS |
| CATGTTGGTGATATATCAAA+AGG | 0.452940 | 5.3:-70218891 | MS.gene37856:CDS |
| CACAGGAGAGGCTGTATTTG+TGG | 0.455647 | 5.3:-70219420 | MS.gene37856:intron |
| TTAATGATTGGCTTTCCAAT+GGG | 0.455836 | 5.3:+70219771 | None:intergenic |
| AGTGGTTGATGGGTCAACTT+TGG | 0.456652 | 5.3:+70222773 | None:intergenic |
| ACTTGAAATGGAAGATGAGC+AGG | 0.456964 | 5.3:-70215001 | MS.gene37856:CDS |
| TTCCAACATTATTGTCATCT+GGG | 0.457369 | 5.3:-70219827 | MS.gene37856:CDS |
| CGATTTAGATACATCCTGAC+AGG | 0.458766 | 5.3:+70218065 | None:intergenic |
| AGGGCATTTCCAAGCGGTCT+AGG | 0.459520 | 5.3:+70220248 | None:intergenic |
| CATATGAGTAAAGTTGCCTC+TGG | 0.462187 | 5.3:-70220551 | MS.gene37856:CDS |
| GCTTCTTTCATGGAGCAACT+TGG | 0.462636 | 5.3:-70215111 | MS.gene37856:CDS |
| AAGAGTGAAACACACATTCC+AGG | 0.462764 | 5.3:+70221214 | None:intergenic |
| AGTTTAACAGAATTAGTACT+TGG | 0.464285 | 5.3:-70217563 | MS.gene37856:CDS |
| TCTGTTGTTGTTGAAGTTGG+TGG | 0.465064 | 5.3:-70217453 | MS.gene37856:CDS |
| AGAAACCAAATTTCTTCAAA+CGG | 0.466700 | 5.3:-70216380 | MS.gene37856:CDS |
| TGATGGAACTGGAAGTCTCT+TGG | 0.469321 | 5.3:-70217358 | MS.gene37856:CDS |
| CTGGACAAAGGTTAAACAAA+TGG | 0.469843 | 5.3:-70217409 | MS.gene37856:CDS |
| TGATAAGTATATTGATTTGA+AGG | 0.470283 | 5.3:-70220726 | MS.gene37856:CDS |
| CTGAAGCTCCTTTATACTGG+TGG | 0.474129 | 5.3:+70220850 | None:intergenic |
| GGTCCATGATAGATGCTTGT+AGG | 0.479012 | 5.3:-70220169 | MS.gene37856:CDS |
| GTAAATCATCGAGTTATTGC+TGG | 0.479514 | 5.3:+70216619 | None:intergenic |
| CTAATGATGCCAATGGAGTC+AGG | 0.480034 | 5.3:-70220805 | MS.gene37856:CDS |
| GTGTCTCCAAGTGATAATTC+TGG | 0.480435 | 5.3:-70220194 | MS.gene37856:CDS |
| ACACTACTTTGCAGCATACA+TGG | 0.480941 | 5.3:-70221343 | MS.gene37856:CDS |
| GCCTCTCAAGGAAAAGCTGC+AGG | 0.482128 | 5.3:-70217205 | MS.gene37856:CDS |
| AACTGAAGCTGCTAGAAGTA+GGG | 0.484152 | 5.3:+70215175 | None:intergenic |
| ACCTGTCCTAAATCCACAGC+AGG | 0.484206 | 5.3:+70216325 | None:intergenic |
| GATACCATCCTGCAGATTGA+AGG | 0.485211 | 5.3:-70215911 | MS.gene37856:intron |
| TGTTTGGTTACAGGTGGTTG+TGG | 0.487014 | 5.3:-70221442 | MS.gene37856:intron |
| GCATCGTGTGCTTTCGTCAA+AGG | 0.489602 | 5.3:-70215729 | MS.gene37856:CDS |
| ATTTCAACATTAAACTGTTG+AGG | 0.491421 | 5.3:+70215773 | None:intergenic |
| GTAATGCAATTGTCTTCGTC+TGG | 0.492178 | 5.3:+70218586 | None:intergenic |
| TGAAGATAACATACAGTGTC+GGG | 0.492653 | 5.3:-70218004 | MS.gene37856:CDS |
| GAAAAGCTGCAGGAAGAAAT+GGG | 0.492737 | 5.3:-70217195 | MS.gene37856:CDS |
| CGAGCTTCTCCTAGACCGCT+TGG | 0.493398 | 5.3:-70220257 | MS.gene37856:CDS |
| GAACTGAAGCTGCTAGAAGT+AGG | 0.493809 | 5.3:+70215174 | None:intergenic |
| CTCAAAAGTTACTGTTTCTG+AGG | 0.494025 | 5.3:-70221134 | MS.gene37856:CDS |
| TGTCGCGAATAATACTGGTA+TGG | 0.496653 | 5.3:-70220774 | MS.gene37856:CDS |
| TTTAATGATTGGCTTTCCAA+TGG | 0.496940 | 5.3:+70219770 | None:intergenic |
| GAAGGCAAGGTATACTCAAA+AGG | 0.497702 | 5.3:+70217645 | None:intergenic |
| GCTGCAATATCTTGGTTGAA+AGG | 0.499437 | 5.3:-70217233 | MS.gene37856:CDS |
| GAGGGATAGTGTCTATTGTA+GGG | 0.500079 | 5.3:+70215792 | None:intergenic |
| TACCGTTCAAGTTTAGCAGC+TGG | 0.501001 | 5.3:-70219990 | MS.gene37856:CDS |
| AAATGCTGCTTTCCTTGTTG+AGG | 0.501446 | 5.3:-70220216 | MS.gene37856:CDS |
| AGAGTCAGTTGAATAACAAC+TGG | 0.502091 | 5.3:+70217516 | None:intergenic |
| GGGAACCTTTGTCGCTGCAC+TGG | 0.502740 | 5.3:-70221094 | MS.gene37856:CDS |
| CATCGTGTGCTTTCGTCAAA+GGG | 0.504051 | 5.3:-70215728 | MS.gene37856:intron |
| AGTGTCGGGTTTAAGAATGA+TGG | 0.504192 | 5.3:-70217990 | MS.gene37856:CDS |
| TGAATGGCACACAATTTGAA+TGG | 0.507343 | 5.3:-70220415 | MS.gene37856:CDS |
| GATACAGTGAGCTTGATTCA+AGG | 0.507611 | 5.3:-70217312 | MS.gene37856:CDS |
| TTCTTTGATAGCTGCTCTTG+TGG | 0.507778 | 5.3:+70215145 | None:intergenic |
| ATAACAAGAAGGGTTGGAGG+AGG | 0.508470 | 5.3:-70218478 | MS.gene37856:CDS |
| TCTCTAATTGAAAATTCTGA+TGG | 0.509370 | 5.3:-70219945 | MS.gene37856:CDS |
| GCATGAAGAACCCCAATCCC+TGG | 0.509741 | 5.3:+70215879 | None:intergenic |
| TGAAGCTCCTTTATACTGGT+GGG | 0.510258 | 5.3:+70220851 | None:intergenic |
| AAGACTGATATGATAATGGC+TGG | 0.511426 | 5.3:-70218041 | MS.gene37856:CDS |
| CACCAAATTGCCACCTACAC+TGG | 0.513059 | 5.3:+70220511 | None:intergenic |
| CTCCATTGGCATCATTAGCA+TGG | 0.513174 | 5.3:+70220810 | None:intergenic |
| GGGAAGCAATTCCTTGAAGC+AGG | 0.513888 | 5.3:-70219807 | MS.gene37856:CDS |
| GGAAAGCCAATCATTAAATC+GGG | 0.513892 | 5.3:-70219765 | MS.gene37856:CDS |
| TGCAGGCAATTTGGTGGTGA+AGG | 0.514688 | 5.3:+70219389 | None:intergenic |
| GATCTGCAATGAGGGGTCCT+GGG | 0.515026 | 5.3:-70217809 | MS.gene37856:CDS |
| GTTAAACTCGGTTGTGGTGA+AGG | 0.515849 | 5.3:-70222711 | MS.gene37856:intron |
| AAGAAATGGGCTCTATCAAG+TGG | 0.516380 | 5.3:-70217182 | MS.gene37856:CDS |
| AGCTCTGAATTGCGGCTGGA+TGG | 0.516531 | 5.3:-70219311 | MS.gene37856:CDS |
| GCTAACTTACTCCATATTGA+AGG | 0.518208 | 5.3:+70217627 | None:intergenic |
| TCAATGGTTCATATAATGAA+TGG | 0.519424 | 5.3:-70220431 | MS.gene37856:CDS |
| TCCCAGTAGATCTGCAATGA+GGG | 0.522620 | 5.3:-70217817 | MS.gene37856:CDS |
| CTTGAGATATTGATCAATGC+TGG | 0.523080 | 5.3:-70217948 | MS.gene37856:CDS |
| TTGTTCATAATTTGCAGCAA+CGG | 0.523598 | 5.3:+70217605 | None:intergenic |
| TATAAATATATGCTCCATGC+AGG | 0.524088 | 5.3:+70219372 | None:intergenic |
| GCATCTTCAACAGATAGAAT+AGG | 0.524416 | 5.3:+70218963 | None:intergenic |
| TTGACGAAAGCACACGATGC+TGG | 0.524622 | 5.3:+70215732 | None:intergenic |
| TTCGTCTTTAGGTACAATAG+TGG | 0.525315 | 5.3:+70220028 | None:intergenic |
| CTCGGTACAATTCAATGTGA+TGG | 0.525942 | 5.3:-70217375 | MS.gene37856:CDS |
| CCCTGCTGTGGATTTAGGAC+AGG | 0.528247 | 5.3:-70216326 | MS.gene37856:intron |
| ACTCAGCTCTGAATTGCGGC+TGG | 0.528605 | 5.3:-70219315 | MS.gene37856:CDS |
| AGAGTGAAACACACATTCCA+GGG | 0.528965 | 5.3:+70221215 | None:intergenic |
| TGCTGCTGATGTTGATATGG+AGG | 0.529902 | 5.3:-70221038 | MS.gene37856:CDS |
| CGAGTAATAACAAGAAGGGT+TGG | 0.531263 | 5.3:-70218484 | MS.gene37856:CDS |
| AGACATTAATGGTTTATCGT+TGG | 0.532041 | 5.3:-70215840 | MS.gene37856:CDS |
| GAAGAGATTACCGGATGTGT+TGG | 0.533307 | 5.3:-70219197 | MS.gene37856:CDS |
| GAGTTCCTTTACCACGGGCA+TGG | 0.533930 | 5.3:+70215049 | None:intergenic |
| TTCTAAATTGCCTTATGCGA+AGG | 0.534390 | 5.3:-70219895 | MS.gene37856:CDS |
| CCCCTCATTGCAGATCTACT+GGG | 0.534999 | 5.3:+70217816 | None:intergenic |
| TAGACGGTCTCCAACACATC+CGG | 0.535508 | 5.3:+70219187 | None:intergenic |
| AGGCAAGCTGCGAAGCAGTT+AGG | 0.536206 | 5.3:-70217260 | MS.gene37856:CDS |
| ATTTGAATGGATAACATTGG+AGG | 0.537974 | 5.3:-70220402 | MS.gene37856:CDS |
| AATGATCCCTGTAGTTCCCC+AGG | 0.539302 | 5.3:+70217792 | None:intergenic |
| AAGAGTGTTAAACTCGGTTG+TGG | 0.539986 | 5.3:-70222717 | MS.gene37856:CDS |
| GGAAATGAATATCACCCCAT+TGG | 0.540595 | 5.3:-70219786 | MS.gene37856:CDS |
| TCTCCAAGTGATAATTCTGG+TGG | 0.541035 | 5.3:-70220191 | MS.gene37856:CDS |
| ATACTCCTTACCCTTGCCAA+TGG | 0.542237 | 5.3:+70219341 | None:intergenic |
| TCACCACCAAATTGCCTGCA+TGG | 0.543535 | 5.3:-70219386 | MS.gene37856:CDS |
| GATAAGTATATTGATTTGAA+GGG | 0.543913 | 5.3:-70220725 | MS.gene37856:CDS |
| GGATTCCATGCTTCTCAATG+TGG | 0.544314 | 5.3:-70221247 | MS.gene37856:CDS |
| GTCGCGAATAATACTGGTAT+GGG | 0.544952 | 5.3:-70220773 | MS.gene37856:CDS |
| TTCCCAGATGACAATAATGT+TGG | 0.544954 | 5.3:+70219825 | None:intergenic |
| ACGGATATTATCTATGATTG+TGG | 0.545517 | 5.3:-70216361 | MS.gene37856:CDS |
| TTCAATATCGTAATCGACAA+TGG | 0.550487 | 5.3:+70218998 | None:intergenic |
| ACAATTTGAATGGATAACAT+TGG | 0.550782 | 5.3:-70220405 | MS.gene37856:CDS |
| ATATCCGTTTACGTAAAAGT+TGG | 0.551972 | 5.3:+70219917 | None:intergenic |
| TATCGTTGGCAGATGGCACA+TGG | 0.552385 | 5.3:-70215826 | MS.gene37856:CDS |
| CCCAGTGGTGGGGAAAACAT+TGG | 0.554854 | 5.3:-70219257 | MS.gene37856:CDS |
| CAGCCTACAAGCATCTATCA+TGG | 0.555012 | 5.3:+70220166 | None:intergenic |
| ATTCAAGCAAAGTGGTTGAT+GGG | 0.555208 | 5.3:+70222763 | None:intergenic |
| ATACAGTGAGCTTGATTCAA+GGG | 0.557138 | 5.3:-70217311 | MS.gene37856:CDS |
| GTAAAGACATTCCCAGTGGT+GGG | 0.558279 | 5.3:-70219268 | MS.gene37856:CDS |
| GCAAAATCCAGATGAAACTT+GGG | 0.558540 | 5.3:-70218654 | MS.gene37856:intron |
| AATGGTTTATCGTTGGCAGA+TGG | 0.558758 | 5.3:-70215833 | MS.gene37856:CDS |
| GGCATTGGAAATAGCAAACA+AGG | 0.561122 | 5.3:-70221298 | MS.gene37856:CDS |
| GTGTCGGGTTTAAGAATGAT+GGG | 0.562805 | 5.3:-70217989 | MS.gene37856:CDS |
| TGTTCGAGTAATAACAAGAA+GGG | 0.563858 | 5.3:-70218488 | MS.gene37856:CDS |
| TTTCTCTGCCCAAAACATGT+TGG | 0.563876 | 5.3:-70218906 | MS.gene37856:CDS |
| ATAACAACAAGTGAAGGCAT+TGG | 0.565209 | 5.3:-70221313 | MS.gene37856:CDS |
| AAGCAGCATTTAAGTATGGA+AGG | 0.566041 | 5.3:+70220228 | None:intergenic |
| AACCATGCTAATGATGCCAA+TGG | 0.567965 | 5.3:-70220812 | MS.gene37856:CDS |
| AAAAGCCACATTGAGAAGCA+TGG | 0.568251 | 5.3:+70221242 | None:intergenic |
| CAAATGGCTGCATTCGCCCT+CGG | 0.569968 | 5.3:-70217393 | MS.gene37856:CDS |
| ACACTGTATGTTATCTTCAT+GGG | 0.570034 | 5.3:+70218008 | None:intergenic |
| TCCAATGAGTTCCTTTACCA+CGG | 0.571507 | 5.3:+70215043 | None:intergenic |
| CTGACTCTAAGACCAACTCC+TGG | 0.572781 | 5.3:-70217501 | MS.gene37856:CDS |
| ACTACTTGCAGTGAACTCAA+TGG | 0.573402 | 5.3:-70220447 | MS.gene37856:CDS |
| ATAGTAGAATGAGTGAACTC+AGG | 0.573900 | 5.3:+70218541 | None:intergenic |
| CGCTTCAAGAGTGTTAAACT+CGG | 0.574246 | 5.3:-70222723 | MS.gene37856:CDS |
| AGTAAAGACATTCCCAGTGG+TGG | 0.574504 | 5.3:-70219269 | MS.gene37856:CDS |
| CTGAGAAACACAGTTGGCAG+AGG | 0.574711 | 5.3:-70220874 | MS.gene37856:CDS |
| CAGGGATCATTCATTGCTGA+AGG | 0.575767 | 5.3:-70217780 | MS.gene37856:CDS |
| CTTACTCCATATTGAAGGCA+AGG | 0.576357 | 5.3:+70217632 | None:intergenic |
| TAGTAGAATGAGTGAACTCA+GGG | 0.579381 | 5.3:+70218542 | None:intergenic |
| GTAATAACAAGAAGGGTTGG+AGG | 0.581690 | 5.3:-70218481 | MS.gene37856:CDS |
| AGTCCACCAAGTATGCTAAG+TGG | 0.581754 | 5.3:+70217897 | None:intergenic |
| TGAAAGGTTGAAGCCTCTCA+AGG | 0.581975 | 5.3:-70217217 | MS.gene37856:CDS |
| GTGGAAATAGATCTTCTGAC+AGG | 0.583841 | 5.3:-70216403 | MS.gene37856:CDS |
| CTGGAGAAAAGGAGAAAGCA+AGG | 0.585830 | 5.3:-70220996 | MS.gene37856:CDS |
| CCAATGAGTTCCTTTACCAC+GGG | 0.586341 | 5.3:+70215044 | None:intergenic |
| ACGCAAGAATTCAAGCAAAG+TGG | 0.586959 | 5.3:+70222755 | None:intergenic |
| ATGTTGATATGGAGGATTTG+GGG | 0.587628 | 5.3:-70221030 | MS.gene37856:CDS |
| CGGAATACAGCCAGTGTAGG+TGG | 0.588893 | 5.3:-70220521 | MS.gene37856:CDS |
| TCCTCGACTCTGTCAACCAA+AGG | 0.589327 | 5.3:+70221388 | None:intergenic |
| ACAAAGTCTCAACCCTGCTG+TGG | 0.589598 | 5.3:-70216338 | MS.gene37856:CDS |
| AACTAACCACAAAGGCTAGA+CGG | 0.591477 | 5.3:+70219171 | None:intergenic |
| TGAGCTCTCAAAGATCAGAA+AGG | 0.591501 | 5.3:-70220696 | MS.gene37856:CDS |
| ATCTGCAATGAGGGGTCCTG+GGG | 0.591631 | 5.3:-70217808 | MS.gene37856:CDS |
| TACAACTCAGCTCTGAATTG+CGG | 0.592560 | 5.3:-70219319 | MS.gene37856:CDS |
| TCCTTTGGTTGACAGAGTCG+AGG | 0.597355 | 5.3:-70221389 | MS.gene37856:CDS |
| TGGTGATATATCAAAAGGAA+TGG | 0.598629 | 5.3:-70218886 | MS.gene37856:CDS |
| CCCGTGGTAAAGGAACTCAT+TGG | 0.600409 | 5.3:-70215044 | MS.gene37856:CDS |
| TAAATCATCGAGTTATTGCT+GGG | 0.601908 | 5.3:+70216620 | None:intergenic |
| ATATGAGTAAAGTTGCCTCT+GGG | 0.602295 | 5.3:-70220550 | MS.gene37856:CDS |
| TAAAGACATTCCCAGTGGTG+GGG | 0.602990 | 5.3:-70219267 | MS.gene37856:CDS |
| ATCACATTGAATTGTACCGA+GGG | 0.603230 | 5.3:+70217377 | None:intergenic |
| CTCCAAGTGATAATTCTGGT+GGG | 0.603864 | 5.3:-70220190 | MS.gene37856:CDS |
| GATAACCAGTGCAGCGACAA+AGG | 0.603889 | 5.3:+70221089 | None:intergenic |
| TTGCCACTTAGCATACTTGG+TGG | 0.604735 | 5.3:-70217900 | MS.gene37856:CDS |
| ACTGGAAGAGAATCAGAAGC+TGG | 0.604823 | 5.3:-70219865 | MS.gene37856:CDS |
| AGGGGTCCTGGGGAACTACA+GGG | 0.608656 | 5.3:-70217798 | MS.gene37856:CDS |
| ATGTTCGAGTAATAACAAGA+AGG | 0.609524 | 5.3:-70218489 | MS.gene37856:CDS |
| AGATCAGAAAGGATCAATCA+GGG | 0.609735 | 5.3:-70220685 | MS.gene37856:CDS |
| GACCCACCAGAATTATCACT+TGG | 0.609820 | 5.3:+70220188 | None:intergenic |
| CTGCCAACTGTGTTTCTCAG+AGG | 0.611445 | 5.3:+70220877 | None:intergenic |
| ATTCGGAATACAGCCAGTGT+AGG | 0.612101 | 5.3:-70220524 | MS.gene37856:CDS |
| GGGAATAAGCAAGCAATCAG+AGG | 0.612158 | 5.3:-70220128 | MS.gene37856:CDS |
| TGTTCAATAACAACAAGTGA+AGG | 0.612214 | 5.3:-70221319 | MS.gene37856:CDS |
| TCACAAGATTCTTTCTGCTG+AGG | 0.613440 | 5.3:-70218853 | MS.gene37856:intron |
| TACAGTGAGCTTGATTCAAG+GGG | 0.613500 | 5.3:-70217310 | MS.gene37856:CDS |
| GGTGGAATTGAAATTGGTCA+GGG | 0.615633 | 5.3:-70217435 | MS.gene37856:CDS |
| TTCCCAGTAGATCTGCAATG+AGG | 0.615817 | 5.3:-70217818 | MS.gene37856:CDS |
| CAAGCGGTCTAGGAGAAGCT+CGG | 0.616375 | 5.3:+70220258 | None:intergenic |
| ATGAAGATAACATACAGTGT+CGG | 0.617200 | 5.3:-70218005 | MS.gene37856:CDS |
| TGGAAAAGTGAGTATTCTGT+CGG | 0.617682 | 5.3:-70217481 | MS.gene37856:CDS |
| AAGTCTCTTGGACAAAGTAA+GGG | 0.620064 | 5.3:-70217346 | MS.gene37856:CDS |
| TAATGATTGGCTTTCCAATG+GGG | 0.620852 | 5.3:+70219772 | None:intergenic |
| ATATGATAATGGCTGGAGGA+CGG | 0.622308 | 5.3:-70218034 | MS.gene37856:CDS |
| AACCAGCTGCTAAACTTGAA+CGG | 0.623161 | 5.3:+70219988 | None:intergenic |
| TAGTATTGTAACAATATCCG+AGG | 0.623581 | 5.3:+70220466 | None:intergenic |
| TTATGAACAAAGAATCGAGA+TGG | 0.626491 | 5.3:-70217592 | MS.gene37856:CDS |
| AAAGTGAGTATTCTGTCGGA+TGG | 0.626955 | 5.3:-70217477 | MS.gene37856:CDS |
| GCTCCATGCAGGCAATTTGG+TGG | 0.627993 | 5.3:+70219383 | None:intergenic |
| AGCAGCATTTAAGTATGGAA+GGG | 0.632691 | 5.3:+70220229 | None:intergenic |
| TCTTCAACAGATAGAATAGG+TGG | 0.633293 | 5.3:+70218966 | None:intergenic |
| TGCTGGGAGTACTACATCAG+AGG | 0.633909 | 5.3:-70217280 | MS.gene37856:CDS |
| TTATGGTGCTGCAGTAAGTG+AGG | 0.638457 | 5.3:-70216591 | MS.gene37856:intron |
| AGGCTGAAAAGGCTATTGCA+GGG | 0.638825 | 5.3:-70221114 | MS.gene37856:CDS |
| TGTAGGTGGCAATTTGGTGA+TGG | 0.639172 | 5.3:-70220507 | MS.gene37856:CDS |
| TGGTCAGGGTCTCTGGACAA+AGG | 0.642121 | 5.3:-70217421 | MS.gene37856:CDS |
| ACACTTTCCAAACTTAATGG+TGG | 0.645084 | 5.3:+70220365 | None:intergenic |
| GATTTAGATACATCCTGACA+GGG | 0.647230 | 5.3:+70218066 | None:intergenic |
| CCCAGTAGATCTGCAATGAG+GGG | 0.647332 | 5.3:-70217816 | MS.gene37856:CDS |
| GAGCAGCTATCAAAGAAGCA+AGG | 0.648046 | 5.3:-70215139 | MS.gene37856:CDS |
| GGTTCCTGCAACCATGCCCG+TGG | 0.650724 | 5.3:-70215060 | MS.gene37856:CDS |
| ACTGAAGCTGCTAGAAGTAG+GGG | 0.651944 | 5.3:+70215176 | None:intergenic |
| AAGCTCGGTAAGTTTCAAAG+TGG | 0.657473 | 5.3:+70220273 | None:intergenic |
| AGAAATGGGCTCTATCAAGT+GGG | 0.663622 | 5.3:-70217181 | MS.gene37856:CDS |
| CACTTGGAGACACCTCAACA+AGG | 0.664111 | 5.3:+70220204 | None:intergenic |
| AGTATTGTAACAATATCCGA+GGG | 0.668326 | 5.3:+70220467 | None:intergenic |
| TAGCCTCTGAGAAACACAGT+TGG | 0.669809 | 5.3:-70220880 | MS.gene37856:CDS |
| CATCACATTGAATTGTACCG+AGG | 0.670966 | 5.3:+70217376 | None:intergenic |
| GAAGCTGCTAGAAGTAGGGG+CGG | 0.684617 | 5.3:+70215179 | None:intergenic |
| CTTGAAATGGAAGATGAGCA+GGG | 0.684920 | 5.3:-70215000 | MS.gene37856:CDS |
| GGATATTACAAAGATAACGA+AGG | 0.694196 | 5.3:-70220752 | MS.gene37856:CDS |
| TTGTGCAGGTGATCATATCG+AGG | 0.697642 | 5.3:+70220953 | None:intergenic |
| ACTGATATGATAATGGCTGG+AGG | 0.700699 | 5.3:-70218038 | MS.gene37856:CDS |
| GATTTAAGAACTAACCACAA+AGG | 0.709098 | 5.3:+70219163 | None:intergenic |
| CCTGTCCTAAATCCACAGCA+GGG | 0.710740 | 5.3:+70216326 | None:intergenic |
| ACAGTGAGCTTGATTCAAGG+GGG | 0.738263 | 5.3:-70217309 | MS.gene37856:CDS |
| GAGTGAAACACACATTCCAG+GGG | 0.739085 | 5.3:+70221216 | None:intergenic |
| TATGGAAGGGCATTTCCAAG+CGG | 0.740649 | 5.3:+70220242 | None:intergenic |
| TCAAGTAAAGACATTCCCAG+TGG | 0.741952 | 5.3:-70219272 | MS.gene37856:CDS |
| TTAGATACATCCTGACAGGG+CGG | 0.749522 | 5.3:+70218069 | None:intergenic |
| TGTATTCCGAATAAACCCAG+AGG | 0.770513 | 5.3:+70220535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 70214995 | 70222871 | 70214995 | ID=MS.gene37856 |
| chr5.3 | mRNA | 70214995 | 70222871 | 70214995 | ID=MS.gene37856.t1;Parent=MS.gene37856 |
| chr5.3 | exon | 70222712 | 70222871 | 70222712 | ID=MS.gene37856.t1.exon1;Parent=MS.gene37856.t1 |
| chr5.3 | CDS | 70222712 | 70222871 | 70222712 | ID=cds.MS.gene37856.t1;Parent=MS.gene37856.t1 |
| chr5.3 | exon | 70219745 | 70221451 | 70219745 | ID=MS.gene37856.t1.exon2;Parent=MS.gene37856.t1 |
| chr5.3 | CDS | 70219745 | 70221451 | 70219745 | ID=cds.MS.gene37856.t1;Parent=MS.gene37856.t1 |
| chr5.3 | exon | 70219178 | 70219437 | 70219178 | ID=MS.gene37856.t1.exon3;Parent=MS.gene37856.t1 |
| chr5.3 | CDS | 70219178 | 70219437 | 70219178 | ID=cds.MS.gene37856.t1;Parent=MS.gene37856.t1 |
| chr5.3 | exon | 70218854 | 70219063 | 70218854 | ID=MS.gene37856.t1.exon4;Parent=MS.gene37856.t1 |
| chr5.3 | CDS | 70218854 | 70219063 | 70218854 | ID=cds.MS.gene37856.t1;Parent=MS.gene37856.t1 |
| chr5.3 | exon | 70218447 | 70218665 | 70218447 | ID=MS.gene37856.t1.exon5;Parent=MS.gene37856.t1 |
| chr5.3 | CDS | 70218447 | 70218665 | 70218447 | ID=cds.MS.gene37856.t1;Parent=MS.gene37856.t1 |
| chr5.3 | exon | 70217164 | 70218129 | 70217164 | ID=MS.gene37856.t1.exon6;Parent=MS.gene37856.t1 |
| chr5.3 | CDS | 70217164 | 70218129 | 70217164 | ID=cds.MS.gene37856.t1;Parent=MS.gene37856.t1 |
| chr5.3 | exon | 70216592 | 70216687 | 70216592 | ID=MS.gene37856.t1.exon7;Parent=MS.gene37856.t1 |
| chr5.3 | CDS | 70216592 | 70216687 | 70216592 | ID=cds.MS.gene37856.t1;Parent=MS.gene37856.t1 |
| chr5.3 | exon | 70216327 | 70216425 | 70216327 | ID=MS.gene37856.t1.exon8;Parent=MS.gene37856.t1 |
| chr5.3 | CDS | 70216327 | 70216425 | 70216327 | ID=cds.MS.gene37856.t1;Parent=MS.gene37856.t1 |
| chr5.3 | exon | 70215729 | 70215918 | 70215729 | ID=MS.gene37856.t1.exon9;Parent=MS.gene37856.t1 |
| chr5.3 | CDS | 70215729 | 70215918 | 70215729 | ID=cds.MS.gene37856.t1;Parent=MS.gene37856.t1 |
| chr5.3 | exon | 70214995 | 70215212 | 70214995 | ID=MS.gene37856.t1.exon10;Parent=MS.gene37856.t1 |
| chr5.3 | CDS | 70214995 | 70215212 | 70214995 | ID=cds.MS.gene37856.t1;Parent=MS.gene37856.t1 |
| Gene Sequence |
| Protein sequence |