Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37868.t1 | BAT95705.1 | 52.4 | 657 | 293 | 9 | 36 | 683 | 25 | 670 | 2.60E-176 | 629 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37868.t1 | P08770 | 34.0 | 668 | 395 | 18 | 45 | 687 | 141 | 787 | 1.4e-82 | 308.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37868.t1 | A0A0S3SSA9 | 52.4 | 657 | 293 | 9 | 36 | 683 | 25 | 670 | 1.8e-176 | 629.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05415 | MS.gene37868 | 0.805293 | 1.43E-49 | -1.69E-46 |
MS.gene056174 | MS.gene37868 | 0.807522 | 4.85E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37868.t1 | MTR_4g120840 | 39.362 | 94 | 56 | 1 | 122 | 214 | 12 | 105 | 2.51e-15 | 72.8 |
MS.gene37868.t1 | MTR_4g107900 | 36.893 | 103 | 62 | 1 | 84 | 186 | 75 | 174 | 1.56e-14 | 72.8 |
MS.gene37868.t1 | MTR_7g106390 | 36.893 | 103 | 62 | 1 | 84 | 186 | 75 | 174 | 1.58e-14 | 72.8 |
MS.gene37868.t1 | MTR_6g027800 | 42.254 | 71 | 41 | 0 | 116 | 186 | 25 | 95 | 1.86e-13 | 67.8 |
MS.gene37868.t1 | MTR_5g023055 | 38.889 | 90 | 52 | 1 | 84 | 173 | 21 | 107 | 3.69e-13 | 66.6 |
MS.gene37868.t1 | MTR_3g020520 | 93.750 | 32 | 2 | 0 | 644 | 675 | 1 | 32 | 1.01e-11 | 67.8 |
MS.gene37868.t1 | MTR_3g020520 | 93.750 | 32 | 2 | 0 | 644 | 675 | 1 | 32 | 1.09e-11 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37868.t1 | AT3G42170 | 27.760 | 634 | 411 | 18 | 43 | 654 | 44 | 652 | 1.70e-76 | 259 |
MS.gene37868.t1 | AT3G42170 | 27.760 | 634 | 411 | 18 | 43 | 654 | 66 | 674 | 3.33e-76 | 258 |
MS.gene37868.t1 | AT1G18560 | 22.866 | 656 | 428 | 23 | 63 | 683 | 68 | 680 | 1.51e-30 | 128 |
Find 152 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACAAGTGCTTCCACCATTT+TGG | 0.101195 | 5.3:-70072361 | None:intergenic |
CTTAACTAGATATCCTATTT+TGG | 0.165624 | 5.3:+70072230 | MS.gene37868:CDS |
AGATTCGTCATGCTGTTAAA+TGG | 0.226041 | 5.3:+70071401 | MS.gene37868:CDS |
AATCAATAGCAAGATATTTA+AGG | 0.228288 | 5.3:-70071875 | None:intergenic |
CGAGCTATGCTTGCCAAAAT+AGG | 0.230959 | 5.3:-70072243 | None:intergenic |
TGGGACAATCACGTCCTAAA+TGG | 0.268359 | 5.3:+70071289 | MS.gene37868:CDS |
TTCCGGTGCTTGCATATAAA+AGG | 0.273137 | 5.3:-70071951 | None:intergenic |
AATTAAGTTCAATAAGTATT+GGG | 0.303044 | 5.3:+70071840 | MS.gene37868:CDS |
TTAAACCTTATTGTGAAATC+TGG | 0.306371 | 5.3:+70071346 | MS.gene37868:CDS |
CGAGCTCCCTTTCCGCTTTG+TGG | 0.313857 | 5.3:+70070856 | MS.gene37868:CDS |
TGCATAACATGATGGGTTCT+TGG | 0.314314 | 5.3:+70071269 | MS.gene37868:CDS |
TACTTGTCTAACACCCAAAA+TGG | 0.319891 | 5.3:+70072347 | MS.gene37868:CDS |
TGTGAACATAATCCCCATTT+AGG | 0.321864 | 5.3:-70071303 | None:intergenic |
TCAAGCCAGATTTCACAATA+AGG | 0.329442 | 5.3:-70071351 | None:intergenic |
CTGACATCAATTTGTCCTTC+AGG | 0.332776 | 5.3:-70071984 | None:intergenic |
GTACCCGGCATAGGGTTAAA+TGG | 0.333425 | 5.3:+70070599 | MS.gene37868:CDS |
AAATCAACTTCTTTCTTGTA+AGG | 0.340231 | 5.3:-70072180 | None:intergenic |
AAATCCACAATTCGTTTGTC+TGG | 0.342991 | 5.3:+70071700 | MS.gene37868:CDS |
TGACACTTATTTGAGGGATT+GGG | 0.351965 | 5.3:+70071177 | MS.gene37868:CDS |
AGAAGGATGACGATGATATT+TGG | 0.354320 | 5.3:+70072079 | MS.gene37868:CDS |
ATACATTGAGGCGTGACATC+TGG | 0.356810 | 5.3:+70070942 | MS.gene37868:CDS |
TTGACACTTATTTGAGGGAT+TGG | 0.369677 | 5.3:+70071176 | MS.gene37868:CDS |
CAAATCCTCGCCATCTAGAT+TGG | 0.370694 | 5.3:+70071426 | MS.gene37868:CDS |
TTTCCTTGATTGGGTCCCTT+GGG | 0.382544 | 5.3:-70070729 | None:intergenic |
GGCCCTCTATATTGAGGAGT+TGG | 0.393948 | 5.3:+70070964 | MS.gene37868:CDS |
TGTGACCAGTGCTTCGTATA+TGG | 0.396163 | 5.3:+70071732 | MS.gene37868:CDS |
CCTCAGCTCATTGTAATTAG+TGG | 0.398098 | 5.3:+70070650 | MS.gene37868:CDS |
CACTTGTTTGCACGCAAGAC+TGG | 0.399218 | 5.3:+70072376 | MS.gene37868:CDS |
GGGACAATCACGTCCTAAAT+GGG | 0.402021 | 5.3:+70071290 | MS.gene37868:CDS |
GCATAACATGATGGGTTCTT+GGG | 0.406939 | 5.3:+70071270 | MS.gene37868:CDS |
AGGGTTAAATGGAAAGAAAA+AGG | 0.414904 | 5.3:+70070610 | MS.gene37868:CDS |
ATGGAATAACAGATGAAGAT+TGG | 0.418977 | 5.3:+70071635 | MS.gene37868:CDS |
GACACTTATTTGAGGGATTG+GGG | 0.420586 | 5.3:+70071178 | MS.gene37868:CDS |
CTCCCGTGTGACCCGTGATT+TGG | 0.421704 | 5.3:-70071135 | None:intergenic |
TATTGTGAAATCTGGCTTGA+AGG | 0.426745 | 5.3:+70071354 | MS.gene37868:CDS |
GCCCTCTATATTGAGGAGTT+GGG | 0.431063 | 5.3:+70070965 | MS.gene37868:CDS |
TCGATATTTGCATAACATGA+TGG | 0.431257 | 5.3:+70071261 | MS.gene37868:CDS |
ATCGTCATCCTTCTCATGCC+TGG | 0.434264 | 5.3:-70072070 | None:intergenic |
CTTTCCATTTAACCCTATGC+CGG | 0.438574 | 5.3:-70070603 | None:intergenic |
GGTCACATTTCGTCGAGAAA+TGG | 0.442539 | 5.3:+70071597 | MS.gene37868:CDS |
TCCCACTACAGTCAAGAAAC+CGG | 0.446268 | 5.3:+70072102 | MS.gene37868:CDS |
AAATTAAGTTCAATAAGTAT+TGG | 0.447605 | 5.3:+70071839 | MS.gene37868:CDS |
AATAGGATATCTAGTTAAGT+TGG | 0.452293 | 5.3:-70072226 | None:intergenic |
GGTCACACGGGAGACATGTT+AGG | 0.453943 | 5.3:+70071145 | MS.gene37868:CDS |
GATTCGTCATGCTGTTAAAT+GGG | 0.454005 | 5.3:+70071402 | MS.gene37868:CDS |
AAAGGCCTTTCTATACTTCA+AGG | 0.455082 | 5.3:-70071554 | None:intergenic |
TCCCCAACTCCTCAATATAG+AGG | 0.461107 | 5.3:-70070967 | None:intergenic |
AGCAAGATATTTAAGGTGCC+TGG | 0.463597 | 5.3:-70071868 | None:intergenic |
AATCATTACATCATTTGCCT+TGG | 0.464135 | 5.3:-70071239 | None:intergenic |
TGGCAGAGGTGTTCACCATT+GGG | 0.469417 | 5.3:+70071752 | MS.gene37868:CDS |
CGATATTTGCATAACATGAT+GGG | 0.471153 | 5.3:+70071262 | MS.gene37868:CDS |
AATAAGTATTGGGGAGATCC+AGG | 0.471916 | 5.3:+70071850 | MS.gene37868:CDS |
ATATGTTGACACTTATTTGA+GGG | 0.475799 | 5.3:+70071171 | MS.gene37868:CDS |
ATGGCAGAGGTGTTCACCAT+TGG | 0.479243 | 5.3:+70071751 | MS.gene37868:CDS |
CCCGGTTTCTTGACTGTAGT+GGG | 0.481086 | 5.3:-70072103 | None:intergenic |
CATGTTCCACAAAGCGGAAA+GGG | 0.481863 | 5.3:-70070862 | None:intergenic |
AGTACAACAGCACCTTTGTA+TGG | 0.483326 | 5.3:-70071484 | None:intergenic |
TGGAATAACAGATGAAGATT+GGG | 0.483610 | 5.3:+70071636 | MS.gene37868:CDS |
AAGGGACCCAATCAAGGAAA+AGG | 0.488607 | 5.3:+70070732 | MS.gene37868:CDS |
CTCAATGTATTCAATGTTGA+CGG | 0.491868 | 5.3:+70071528 | MS.gene37868:CDS |
CTATTCAAAATTTGATCAAG+AGG | 0.496012 | 5.3:+70070796 | MS.gene37868:CDS |
AAGGGATCAACAAGCATATG+AGG | 0.497638 | 5.3:+70071776 | MS.gene37868:CDS |
GTTGTATGGTAAGATATTAA+CGG | 0.503435 | 5.3:+70071201 | MS.gene37868:CDS |
TCAGAGTCGGCATTCAGCAC+TGG | 0.509438 | 5.3:+70072300 | MS.gene37868:CDS |
GTTTACCTTTCTCCAATCGA+TGG | 0.510235 | 5.3:-70072449 | None:intergenic |
GCCCGGTTTCTTGACTGTAG+TGG | 0.511265 | 5.3:-70072104 | None:intergenic |
TCACAGAGGTACCCGGCATA+GGG | 0.517991 | 5.3:+70070591 | MS.gene37868:CDS |
TTCACAGAGGTACCCGGCAT+AGG | 0.518747 | 5.3:+70070590 | MS.gene37868:CDS |
ACACCCAAGGGACCCAATCA+AGG | 0.520129 | 5.3:+70070726 | MS.gene37868:CDS |
CACAAAGCGGAAAGGGAGCT+CGG | 0.522672 | 5.3:-70070855 | None:intergenic |
GAACATGATGTTCAATCTAC+TGG | 0.523261 | 5.3:+70070530 | MS.gene37868:CDS |
AAAATTTATGTTCAATATGG+TGG | 0.524749 | 5.3:+70072015 | MS.gene37868:CDS |
TACATTGAGGCGTGACATCT+GGG | 0.528439 | 5.3:+70070943 | MS.gene37868:CDS |
GCATTGAGGTTTGTATCTTG+TGG | 0.528484 | 5.3:-70070470 | None:intergenic |
AGTGGTATGTGGAATCATCT+AGG | 0.530045 | 5.3:+70070677 | MS.gene37868:CDS |
TGCACGCAAGACTGGTTGAA+AGG | 0.530842 | 5.3:+70072384 | MS.gene37868:CDS |
ATTAAGTTCAATAAGTATTG+GGG | 0.531652 | 5.3:+70071841 | MS.gene37868:CDS |
AATATGTTGACACTTATTTG+AGG | 0.532577 | 5.3:+70071170 | MS.gene37868:CDS |
GAGGTGTTCACCATTGGGAA+AGG | 0.533854 | 5.3:+70071757 | MS.gene37868:CDS |
CGGCATTCAGCACTGGTGGA+AGG | 0.534250 | 5.3:+70072307 | MS.gene37868:CDS |
AGATCCAGACAAACGAATTG+TGG | 0.535242 | 5.3:-70071704 | None:intergenic |
ATCAACTTTAATCATCTAAG+TGG | 0.535282 | 5.3:-70072580 | None:intergenic |
CCTTGATGAGATCCATCGAT+TGG | 0.535680 | 5.3:+70072437 | MS.gene37868:CDS |
TTGCCAAATCACGGGTCACA+CGG | 0.540401 | 5.3:+70071132 | MS.gene37868:CDS |
TTTCCATTTAACCCTATGCC+GGG | 0.547327 | 5.3:-70070602 | None:intergenic |
GAGATCCATCGATTGGAGAA+AGG | 0.548419 | 5.3:+70072444 | MS.gene37868:CDS |
CTTGTTGATCCCTTTCCCAA+TGG | 0.550514 | 5.3:-70071767 | None:intergenic |
CTCAGCTCATTGTAATTAGT+GGG | 0.551596 | 5.3:+70070651 | MS.gene37868:CDS |
AGGTGTTCACCATTGGGAAA+GGG | 0.555935 | 5.3:+70071758 | MS.gene37868:CDS |
GCAAGACTGGTTGAAAGGAA+AGG | 0.557171 | 5.3:+70072389 | MS.gene37868:CDS |
GCAAAATGCAGTTTCGCCCG+TGG | 0.559044 | 5.3:-70071913 | None:intergenic |
GGCATTCAGCACTGGTGGAA+GGG | 0.561125 | 5.3:+70072308 | MS.gene37868:CDS |
ATGGAAGAGAAAACAACGCA+TGG | 0.563172 | 5.3:+70071616 | MS.gene37868:CDS |
TACTTGATGTTGACACTCGT+TGG | 0.565341 | 5.3:+70071503 | MS.gene37868:CDS |
TTTATAAAACAACTCAAGCA+AGG | 0.566250 | 5.3:-70071680 | None:intergenic |
CTCTGCCATATACGAAGCAC+TGG | 0.569623 | 5.3:-70071737 | None:intergenic |
TCATGTTCCACAAAGCGGAA+AGG | 0.569949 | 5.3:-70070863 | None:intergenic |
CCCTCTATATTGAGGAGTTG+GGG | 0.574321 | 5.3:+70070966 | MS.gene37868:CDS |
CAGTGCTTCGTATATGGCAG+AGG | 0.574586 | 5.3:+70071738 | MS.gene37868:CDS |
CCAATCGATGGATCTCATCA+AGG | 0.575637 | 5.3:-70072437 | None:intergenic |
CGCCTCAATGTATATCGTGA+GGG | 0.576371 | 5.3:-70070932 | None:intergenic |
CATCTGGGCCCTCTATATTG+AGG | 0.577592 | 5.3:+70070958 | MS.gene37868:CDS |
TCTGAAGCTACTGTAGATGC+AGG | 0.580487 | 5.3:-70072282 | None:intergenic |
AAGTTCTCACTAATTGCGCT+CGG | 0.582273 | 5.3:-70070823 | None:intergenic |
GAGTCGGCATTCAGCACTGG+TGG | 0.583771 | 5.3:+70072303 | MS.gene37868:CDS |
ACACTTATTTGAGGGATTGG+GGG | 0.584183 | 5.3:+70071179 | MS.gene37868:CDS |
TTAGTGGGACAAGTGGTATG+TGG | 0.585239 | 5.3:+70070666 | MS.gene37868:CDS |
GGTTGCCTTGAAGTATAGAA+AGG | 0.587124 | 5.3:+70071549 | MS.gene37868:CDS |
TTTGGCAAGCATAGCTCGAG+AGG | 0.591224 | 5.3:+70072248 | MS.gene37868:CDS |
GTAACAAGCGGTCTAATGTG+TGG | 0.592211 | 5.3:+70070561 | MS.gene37868:CDS |
CCCCAACTCCTCAATATAGA+GGG | 0.593431 | 5.3:-70070966 | None:intergenic |
CCCACTACAGTCAAGAAACC+GGG | 0.594759 | 5.3:+70072103 | MS.gene37868:CDS |
TAACAAGCGGTCTAATGTGT+GGG | 0.599129 | 5.3:+70070562 | MS.gene37868:CDS |
GAGTACAAATAAGTACATCA+TGG | 0.599583 | 5.3:+70071798 | MS.gene37868:CDS |
TGAGTTTGACAACAGATACA+TGG | 0.600827 | 5.3:+70071023 | MS.gene37868:CDS |
CTCTTCAGAAAACAAGTGGA+GGG | 0.603788 | 5.3:-70072412 | None:intergenic |
ACTAGAAACCAGGCATGAGA+AGG | 0.604174 | 5.3:+70072062 | MS.gene37868:CDS |
TATAACAATGGTGACACCCA+AGG | 0.604425 | 5.3:+70070713 | MS.gene37868:CDS |
TTCACGATCAACAAAATGAA+CGG | 0.605466 | 5.3:-70071080 | None:intergenic |
GGTCCTCTTCAGAAAACAAG+TGG | 0.606377 | 5.3:-70072416 | None:intergenic |
TTTAGAATCAGAAACATGCC+CGG | 0.607609 | 5.3:-70072121 | None:intergenic |
TGTGAAATCTGGCTTGAAGG+AGG | 0.610118 | 5.3:+70071357 | MS.gene37868:CDS |
ATTCTTCATGTTCCACAAAG+CGG | 0.610672 | 5.3:-70070868 | None:intergenic |
CGGAAAAGCTAAACACCTGA+AGG | 0.611015 | 5.3:+70071969 | MS.gene37868:CDS |
CACTAATTACAATGAGCTGA+GGG | 0.616686 | 5.3:-70070649 | None:intergenic |
CCTCTTCAGAAAACAAGTGG+AGG | 0.617808 | 5.3:-70072413 | None:intergenic |
GAACATTTCACAGAGGTACC+CGG | 0.617881 | 5.3:+70070584 | MS.gene37868:CDS |
TTGTCTAACACCCAAAATGG+TGG | 0.621592 | 5.3:+70072350 | MS.gene37868:CDS |
ATCTACAGTAGCTTCAGAGT+CGG | 0.621759 | 5.3:+70072287 | MS.gene37868:CDS |
ATTGTAATTAGTGGGACAAG+TGG | 0.626484 | 5.3:+70070659 | MS.gene37868:CDS |
TGCCAAATCACGGGTCACAC+GGG | 0.627003 | 5.3:+70071133 | MS.gene37868:CDS |
ACGCCTCAATGTATATCGTG+AGG | 0.627733 | 5.3:-70070933 | None:intergenic |
TCGTACGCTTAACTTGTGAA+AGG | 0.630292 | 5.3:-70071572 | None:intergenic |
CCACTAATTACAATGAGCTG+AGG | 0.632249 | 5.3:-70070650 | None:intergenic |
TTATAAAACAACTCAAGCAA+GGG | 0.634094 | 5.3:-70071679 | None:intergenic |
AATCTAGTCTACTAGAAACC+AGG | 0.634464 | 5.3:+70072052 | MS.gene37868:CDS |
GATGAGAAAATTCCATACAA+AGG | 0.635607 | 5.3:+70071472 | MS.gene37868:CDS |
ATAACAATGGTGACACCCAA+GGG | 0.637467 | 5.3:+70070714 | MS.gene37868:CDS |
ATAGTTCATTCGACGCATTG+AGG | 0.641461 | 5.3:-70070484 | None:intergenic |
TCACAAGTTAAGCGTACGAG+AGG | 0.647053 | 5.3:+70071576 | MS.gene37868:CDS |
TCCCCTCACGATATACATTG+AGG | 0.649335 | 5.3:+70070930 | MS.gene37868:CDS |
TAAGATATTAACGGTAACTG+TGG | 0.649394 | 5.3:+70071210 | MS.gene37868:CDS |
GCCTCAATGTATATCGTGAG+GGG | 0.653089 | 5.3:-70070931 | None:intergenic |
GGTAACTGTGGATAATGCCA+AGG | 0.654848 | 5.3:+70071222 | MS.gene37868:CDS |
AGATGCACTAAGTATAACAA+TGG | 0.657414 | 5.3:+70070701 | MS.gene37868:CDS |
GGACAATCACGTCCTAAATG+GGG | 0.660028 | 5.3:+70071291 | MS.gene37868:CDS |
CGTGAGGGGATGTCGAATCG+AGG | 0.661682 | 5.3:-70070917 | None:intergenic |
ATGGGGATTATGTTCACATG+CGG | 0.678091 | 5.3:+70071308 | MS.gene37868:CDS |
CTGGCAACACTAGTAACAAG+CGG | 0.678698 | 5.3:+70070549 | MS.gene37868:CDS |
GGCTTGAAGGAGGATAAACA+AGG | 0.683086 | 5.3:+70071367 | MS.gene37868:CDS |
GCTTGAAGGAGGATAAACAA+GGG | 0.733936 | 5.3:+70071368 | MS.gene37868:CDS |
TGTGTGGGAACATTTCACAG+AGG | 0.805810 | 5.3:+70070577 | MS.gene37868:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTAAGTTCAATAAGTAT+TGG | + | chr5.3:70071839-70071858 | MS.gene37868:CDS | 15.0% |
!! | AATTAAGTTCAATAAGTATT+GGG | + | chr5.3:70071840-70071859 | MS.gene37868:CDS | 15.0% |
!! | AGAAAAATTTATGTTCAATA+TGG | + | chr5.3:70072012-70072031 | MS.gene37868:CDS | 15.0% |
!! | AAAATTTATGTTCAATATGG+TGG | + | chr5.3:70072015-70072034 | MS.gene37868:CDS | 20.0% |
!! | AATCAATAGCAAGATATTTA+AGG | - | chr5.3:70071878-70071897 | None:intergenic | 20.0% |
!!! | ATTAAGTTCAATAAGTATTG+GGG | + | chr5.3:70071841-70071860 | MS.gene37868:CDS | 20.0% |
!!! | GATTCATATTTTCAACATTT+TGG | + | chr5.3:70072507-70072526 | MS.gene37868:intron | 20.0% |
! | AAAAAAGACTTGAAGAATTG+TGG | + | chr5.3:70070995-70071014 | MS.gene37868:CDS | 25.0% |
! | AAATCAACTTCTTTCTTGTA+AGG | - | chr5.3:70072183-70072202 | None:intergenic | 25.0% |
! | AAGGAGAAAAATCGTTAAAA+AGG | + | chr5.3:70070751-70070770 | MS.gene37868:CDS | 25.0% |
! | AATAGGATATCTAGTTAAGT+TGG | - | chr5.3:70072229-70072248 | None:intergenic | 25.0% |
! | AATATGTTGACACTTATTTG+AGG | + | chr5.3:70071170-70071189 | MS.gene37868:CDS | 25.0% |
! | AGGAGAAAAATCGTTAAAAA+GGG | + | chr5.3:70070752-70070771 | MS.gene37868:CDS | 25.0% |
! | ATATGTTGACACTTATTTGA+GGG | + | chr5.3:70071171-70071190 | MS.gene37868:CDS | 25.0% |
! | CTATTCAAAATTTGATCAAG+AGG | + | chr5.3:70070796-70070815 | MS.gene37868:CDS | 25.0% |
! | GTTGTATGGTAAGATATTAA+CGG | + | chr5.3:70071201-70071220 | MS.gene37868:CDS | 25.0% |
! | TTAAACCTTATTGTGAAATC+TGG | + | chr5.3:70071346-70071365 | MS.gene37868:CDS | 25.0% |
! | TTATAAAACAACTCAAGCAA+GGG | - | chr5.3:70071682-70071701 | None:intergenic | 25.0% |
! | TTTATAAAACAACTCAAGCA+AGG | - | chr5.3:70071683-70071702 | None:intergenic | 25.0% |
!! | CTTAACTAGATATCCTATTT+TGG | + | chr5.3:70072230-70072249 | MS.gene37868:CDS | 25.0% |
!! | TGATCAAATTTTGAATAGCT+TGG | - | chr5.3:70070794-70070813 | None:intergenic | 25.0% |
AATCATTACATCATTTGCCT+TGG | - | chr5.3:70071242-70071261 | None:intergenic | 30.0% | |
AGATGCACTAAGTATAACAA+TGG | + | chr5.3:70070701-70070720 | MS.gene37868:CDS | 30.0% | |
AGGGTTAAATGGAAAGAAAA+AGG | + | chr5.3:70070610-70070629 | MS.gene37868:CDS | 30.0% | |
ATGGAATAACAGATGAAGAT+TGG | + | chr5.3:70071635-70071654 | MS.gene37868:CDS | 30.0% | |
CGATATTTGCATAACATGAT+GGG | + | chr5.3:70071262-70071281 | MS.gene37868:CDS | 30.0% | |
CTCAATGTATTCAATGTTGA+CGG | + | chr5.3:70071528-70071547 | MS.gene37868:CDS | 30.0% | |
GAGTACAAATAAGTACATCA+TGG | + | chr5.3:70071798-70071817 | MS.gene37868:CDS | 30.0% | |
GATGAGAAAATTCCATACAA+AGG | + | chr5.3:70071472-70071491 | MS.gene37868:CDS | 30.0% | |
TAAGATATTAACGGTAACTG+TGG | + | chr5.3:70071210-70071229 | MS.gene37868:CDS | 30.0% | |
TCGATATTTGCATAACATGA+TGG | + | chr5.3:70071261-70071280 | MS.gene37868:CDS | 30.0% | |
TGGAATAACAGATGAAGATT+GGG | + | chr5.3:70071636-70071655 | MS.gene37868:CDS | 30.0% | |
TTCACGATCAACAAAATGAA+CGG | - | chr5.3:70071083-70071102 | None:intergenic | 30.0% | |
! | ATAAACTTTTGCCAAATCAC+GGG | + | chr5.3:70071124-70071143 | MS.gene37868:CDS | 30.0% |
! | ATGAACTTTTCCAATCTAGA+TGG | - | chr5.3:70071439-70071458 | None:intergenic | 30.0% |
! | CATAAACTTTTGCCAAATCA+CGG | + | chr5.3:70071123-70071142 | MS.gene37868:CDS | 30.0% |
! | TTTTCTCCTTTTCCTTGATT+GGG | - | chr5.3:70070741-70070760 | None:intergenic | 30.0% |
! | TTTTTCTCCTTTTCCTTGAT+TGG | - | chr5.3:70070742-70070761 | None:intergenic | 30.0% |
!! | GAAGTTGATTTTGACATCTT+AGG | + | chr5.3:70072192-70072211 | MS.gene37868:CDS | 30.0% |
!! | TTGATTTTGACATCTTAGGT+TGG | + | chr5.3:70072196-70072215 | MS.gene37868:CDS | 30.0% |
AAAGGCCTTTCTATACTTCA+AGG | - | chr5.3:70071557-70071576 | None:intergenic | 35.0% | |
AAATCCACAATTCGTTTGTC+TGG | + | chr5.3:70071700-70071719 | MS.gene37868:CDS | 35.0% | |
AATCTAGTCTACTAGAAACC+AGG | + | chr5.3:70072052-70072071 | MS.gene37868:CDS | 35.0% | |
AGAAGGATGACGATGATATT+TGG | + | chr5.3:70072079-70072098 | MS.gene37868:CDS | 35.0% | |
AGATTCGTCATGCTGTTAAA+TGG | + | chr5.3:70071401-70071420 | MS.gene37868:CDS | 35.0% | |
ATTCTTCATGTTCCACAAAG+CGG | - | chr5.3:70070871-70070890 | None:intergenic | 35.0% | |
ATTGTAATTAGTGGGACAAG+TGG | + | chr5.3:70070659-70070678 | MS.gene37868:CDS | 35.0% | |
CACTAATTACAATGAGCTGA+GGG | - | chr5.3:70070652-70070671 | None:intergenic | 35.0% | |
CTCAGCTCATTGTAATTAGT+GGG | + | chr5.3:70070651-70070670 | MS.gene37868:CDS | 35.0% | |
GAACATGATGTTCAATCTAC+TGG | + | chr5.3:70070530-70070549 | MS.gene37868:CDS | 35.0% | |
GATTCGTCATGCTGTTAAAT+GGG | + | chr5.3:70071402-70071421 | MS.gene37868:CDS | 35.0% | |
TACTTGTCTAACACCCAAAA+TGG | + | chr5.3:70072347-70072366 | MS.gene37868:CDS | 35.0% | |
TCAAGCCAGATTTCACAATA+AGG | - | chr5.3:70071354-70071373 | None:intergenic | 35.0% | |
TGACACTTATTTGAGGGATT+GGG | + | chr5.3:70071177-70071196 | MS.gene37868:CDS | 35.0% | |
TGAGTTTGACAACAGATACA+TGG | + | chr5.3:70071023-70071042 | MS.gene37868:CDS | 35.0% | |
TGTGAACATAATCCCCATTT+AGG | - | chr5.3:70071306-70071325 | None:intergenic | 35.0% | |
TTGACACTTATTTGAGGGAT+TGG | + | chr5.3:70071176-70071195 | MS.gene37868:CDS | 35.0% | |
! | TATTGTGAAATCTGGCTTGA+AGG | + | chr5.3:70071354-70071373 | MS.gene37868:CDS | 35.0% |
! | TTTAGAATCAGAAACATGCC+CGG | - | chr5.3:70072124-70072143 | None:intergenic | 35.0% |
!! | TTGCTTTTGTTCTTGATCCA+CGG | + | chr5.3:70071896-70071915 | MS.gene37868:CDS | 35.0% |
!! | TTTTGGGTGTTAGACAAGTA+CGG | - | chr5.3:70072347-70072366 | None:intergenic | 35.0% |
!!! | ATTTTGACATCTTAGGTTGG+TGG | + | chr5.3:70072199-70072218 | MS.gene37868:CDS | 35.0% |
AAGGGATCAACAAGCATATG+AGG | + | chr5.3:70071776-70071795 | MS.gene37868:CDS | 40.0% | |
AAGTTCTCACTAATTGCGCT+CGG | - | chr5.3:70070826-70070845 | None:intergenic | 40.0% | |
ACACTTATTTGAGGGATTGG+GGG | + | chr5.3:70071179-70071198 | MS.gene37868:CDS | 40.0% | |
AGATCCAGACAAACGAATTG+TGG | - | chr5.3:70071707-70071726 | None:intergenic | 40.0% | |
AGTACAACAGCACCTTTGTA+TGG | - | chr5.3:70071487-70071506 | None:intergenic | 40.0% | |
AGTGGTATGTGGAATCATCT+AGG | + | chr5.3:70070677-70070696 | MS.gene37868:CDS | 40.0% | |
ATAACAATGGTGACACCCAA+GGG | + | chr5.3:70070714-70070733 | MS.gene37868:CDS | 40.0% | |
ATAGTTCATTCGACGCATTG+AGG | - | chr5.3:70070487-70070506 | None:intergenic | 40.0% | |
ATCTACAGTAGCTTCAGAGT+CGG | + | chr5.3:70072287-70072306 | MS.gene37868:CDS | 40.0% | |
ATGGAAGAGAAAACAACGCA+TGG | + | chr5.3:70071616-70071635 | MS.gene37868:CDS | 40.0% | |
ATGGGGATTATGTTCACATG+CGG | + | chr5.3:70071308-70071327 | MS.gene37868:CDS | 40.0% | |
CCACTAATTACAATGAGCTG+AGG | - | chr5.3:70070653-70070672 | None:intergenic | 40.0% | |
CCTCAGCTCATTGTAATTAG+TGG | + | chr5.3:70070650-70070669 | MS.gene37868:CDS | 40.0% | |
CTCTTCAGAAAACAAGTGGA+GGG | - | chr5.3:70072415-70072434 | None:intergenic | 40.0% | |
CTGACATCAATTTGTCCTTC+AGG | - | chr5.3:70071987-70072006 | None:intergenic | 40.0% | |
CTTTCCATTTAACCCTATGC+CGG | - | chr5.3:70070606-70070625 | None:intergenic | 40.0% | |
GACACTTATTTGAGGGATTG+GGG | + | chr5.3:70071178-70071197 | MS.gene37868:CDS | 40.0% | |
GCATTGAGGTTTGTATCTTG+TGG | - | chr5.3:70070473-70070492 | None:intergenic | 40.0% | |
GCTTGAAGGAGGATAAACAA+GGG | + | chr5.3:70071368-70071387 | MS.gene37868:CDS | 40.0% | |
GGTTGCCTTGAAGTATAGAA+AGG | + | chr5.3:70071549-70071568 | MS.gene37868:CDS | 40.0% | |
GTTTACCTTTCTCCAATCGA+TGG | - | chr5.3:70072452-70072471 | None:intergenic | 40.0% | |
TAACAAGCGGTCTAATGTGT+GGG | + | chr5.3:70070562-70070581 | MS.gene37868:CDS | 40.0% | |
TACTTGATGTTGACACTCGT+TGG | + | chr5.3:70071503-70071522 | MS.gene37868:CDS | 40.0% | |
TATAACAATGGTGACACCCA+AGG | + | chr5.3:70070713-70070732 | MS.gene37868:CDS | 40.0% | |
TTCCGGTGCTTGCATATAAA+AGG | - | chr5.3:70071954-70071973 | None:intergenic | 40.0% | |
TTGTCTAACACCCAAAATGG+TGG | + | chr5.3:70072350-70072369 | MS.gene37868:CDS | 40.0% | |
TTTCCATTTAACCCTATGCC+GGG | - | chr5.3:70070605-70070624 | None:intergenic | 40.0% | |
! | AACAAGTGCTTCCACCATTT+TGG | - | chr5.3:70072364-70072383 | None:intergenic | 40.0% |
! | ACAAGTGCTTCCACCATTTT+GGG | - | chr5.3:70072363-70072382 | None:intergenic | 40.0% |
! | AGCAAGATATTTAAGGTGCC+TGG | - | chr5.3:70071871-70071890 | None:intergenic | 40.0% |
! | GACCTTTTATATGCAAGCAC+CGG | + | chr5.3:70071949-70071968 | MS.gene37868:CDS | 40.0% |
! | TGCTTTTGTTCTTGATCCAC+GGG | + | chr5.3:70071897-70071916 | MS.gene37868:CDS | 40.0% |
!! | AATAAGTATTGGGGAGATCC+AGG | + | chr5.3:70071850-70071869 | MS.gene37868:CDS | 40.0% |
!! | GCATAACATGATGGGTTCTT+GGG | + | chr5.3:70071270-70071289 | MS.gene37868:CDS | 40.0% |
!! | TCGTACGCTTAACTTGTGAA+AGG | - | chr5.3:70071575-70071594 | None:intergenic | 40.0% |
!! | TGCATAACATGATGGGTTCT+TGG | + | chr5.3:70071269-70071288 | MS.gene37868:CDS | 40.0% |
!!! | CTTCAGGTGTTTAGCTTTTC+CGG | - | chr5.3:70071971-70071990 | None:intergenic | 40.0% |
AAGGGACCCAATCAAGGAAA+AGG | + | chr5.3:70070732-70070751 | MS.gene37868:CDS | 45.0% | |
ACGCCTCAATGTATATCGTG+AGG | - | chr5.3:70070936-70070955 | None:intergenic | 45.0% | |
ACTAGAAACCAGGCATGAGA+AGG | + | chr5.3:70072062-70072081 | MS.gene37868:CDS | 45.0% | |
AGGTGTTCACCATTGGGAAA+GGG | + | chr5.3:70071758-70071777 | MS.gene37868:CDS | 45.0% | |
ATACATTGAGGCGTGACATC+TGG | + | chr5.3:70070942-70070961 | MS.gene37868:CDS | 45.0% | |
CAAATCCTCGCCATCTAGAT+TGG | + | chr5.3:70071426-70071445 | MS.gene37868:CDS | 45.0% | |
CATGTTCCACAAAGCGGAAA+GGG | - | chr5.3:70070865-70070884 | None:intergenic | 45.0% | |
CCAATCGATGGATCTCATCA+AGG | - | chr5.3:70072440-70072459 | None:intergenic | 45.0% | |
CCCCAACTCCTCAATATAGA+GGG | - | chr5.3:70070969-70070988 | None:intergenic | 45.0% | |
CCCTCTATATTGAGGAGTTG+GGG | + | chr5.3:70070966-70070985 | MS.gene37868:CDS | 45.0% | |
CCTCTTCAGAAAACAAGTGG+AGG | - | chr5.3:70072416-70072435 | None:intergenic | 45.0% | |
CCTTGATGAGATCCATCGAT+TGG | + | chr5.3:70072437-70072456 | MS.gene37868:CDS | 45.0% | |
CGAGCTATGCTTGCCAAAAT+AGG | - | chr5.3:70072246-70072265 | None:intergenic | 45.0% | |
CGCCTCAATGTATATCGTGA+GGG | - | chr5.3:70070935-70070954 | None:intergenic | 45.0% | |
CGGAAAAGCTAAACACCTGA+AGG | + | chr5.3:70071969-70071988 | MS.gene37868:CDS | 45.0% | |
CTGGCAACACTAGTAACAAG+CGG | + | chr5.3:70070549-70070568 | MS.gene37868:CDS | 45.0% | |
CTTGTTGATCCCTTTCCCAA+TGG | - | chr5.3:70071770-70071789 | None:intergenic | 45.0% | |
GCCCTCTATATTGAGGAGTT+GGG | + | chr5.3:70070965-70070984 | MS.gene37868:CDS | 45.0% | |
GCCTCAATGTATATCGTGAG+GGG | - | chr5.3:70070934-70070953 | None:intergenic | 45.0% | |
GGACAATCACGTCCTAAATG+GGG | + | chr5.3:70071291-70071310 | MS.gene37868:CDS | 45.0% | |
GGCTTGAAGGAGGATAAACA+AGG | + | chr5.3:70071367-70071386 | MS.gene37868:CDS | 45.0% | |
GGGACAATCACGTCCTAAAT+GGG | + | chr5.3:70071290-70071309 | MS.gene37868:CDS | 45.0% | |
GGTAACTGTGGATAATGCCA+AGG | + | chr5.3:70071222-70071241 | MS.gene37868:CDS | 45.0% | |
GGTCACATTTCGTCGAGAAA+TGG | + | chr5.3:70071597-70071616 | MS.gene37868:CDS | 45.0% | |
GGTCCTCTTCAGAAAACAAG+TGG | - | chr5.3:70072419-70072438 | None:intergenic | 45.0% | |
GTAACAAGCGGTCTAATGTG+TGG | + | chr5.3:70070561-70070580 | MS.gene37868:CDS | 45.0% | |
TACATTGAGGCGTGACATCT+GGG | + | chr5.3:70070943-70070962 | MS.gene37868:CDS | 45.0% | |
TCACAAGTTAAGCGTACGAG+AGG | + | chr5.3:70071576-70071595 | MS.gene37868:CDS | 45.0% | |
TCATGTTCCACAAAGCGGAA+AGG | - | chr5.3:70070866-70070885 | None:intergenic | 45.0% | |
TCCCACTACAGTCAAGAAAC+CGG | + | chr5.3:70072102-70072121 | MS.gene37868:CDS | 45.0% | |
TCCCCAACTCCTCAATATAG+AGG | - | chr5.3:70070970-70070989 | None:intergenic | 45.0% | |
TCCCCTCACGATATACATTG+AGG | + | chr5.3:70070930-70070949 | MS.gene37868:CDS | 45.0% | |
TGGGACAATCACGTCCTAAA+TGG | + | chr5.3:70071289-70071308 | MS.gene37868:CDS | 45.0% | |
TGTGACCAGTGCTTCGTATA+TGG | + | chr5.3:70071732-70071751 | MS.gene37868:CDS | 45.0% | |
TGTGTGGGAACATTTCACAG+AGG | + | chr5.3:70070577-70070596 | MS.gene37868:CDS | 45.0% | |
TTAGTGGGACAAGTGGTATG+TGG | + | chr5.3:70070666-70070685 | MS.gene37868:CDS | 45.0% | |
TTTCCTTGATTGGGTCCCTT+GGG | - | chr5.3:70070732-70070751 | None:intergenic | 45.0% | |
! | CTTTTCCAATCTAGATGGCG+AGG | - | chr5.3:70071434-70071453 | None:intergenic | 45.0% |
! | GAGATCCATCGATTGGAGAA+AGG | + | chr5.3:70072444-70072463 | MS.gene37868:CDS | 45.0% |
! | GCAAGACTGGTTGAAAGGAA+AGG | + | chr5.3:70072389-70072408 | MS.gene37868:CDS | 45.0% |
! | TCTGAAGCTACTGTAGATGC+AGG | - | chr5.3:70072285-70072304 | None:intergenic | 45.0% |
! | TGTGAAATCTGGCTTGAAGG+AGG | + | chr5.3:70071357-70071376 | MS.gene37868:CDS | 45.0% |
! | TTTTCCTTGATTGGGTCCCT+TGG | - | chr5.3:70070733-70070752 | None:intergenic | 45.0% |
!! | CCTCCACTTGTTTTCTGAAG+AGG | + | chr5.3:70072413-70072432 | MS.gene37868:CDS | 45.0% |
!! | GAACATTTCACAGAGGTACC+CGG | + | chr5.3:70070584-70070603 | MS.gene37868:CDS | 45.0% |
ATCGTCATCCTTCTCATGCC+TGG | - | chr5.3:70072073-70072092 | None:intergenic | 50.0% | |
CACTTGTTTGCACGCAAGAC+TGG | + | chr5.3:70072376-70072395 | MS.gene37868:CDS | 50.0% | |
CAGTGCTTCGTATATGGCAG+AGG | + | chr5.3:70071738-70071757 | MS.gene37868:CDS | 50.0% | |
CATCTGGGCCCTCTATATTG+AGG | + | chr5.3:70070958-70070977 | MS.gene37868:CDS | 50.0% | |
CCCACTACAGTCAAGAAACC+GGG | + | chr5.3:70072103-70072122 | MS.gene37868:CDS | 50.0% | |
CCCGGTTTCTTGACTGTAGT+GGG | - | chr5.3:70072106-70072125 | None:intergenic | 50.0% | |
CTCTGCCATATACGAAGCAC+TGG | - | chr5.3:70071740-70071759 | None:intergenic | 50.0% | |
GGCCCTCTATATTGAGGAGT+TGG | + | chr5.3:70070964-70070983 | MS.gene37868:CDS | 50.0% | |
GTACCCGGCATAGGGTTAAA+TGG | + | chr5.3:70070599-70070618 | MS.gene37868:CDS | 50.0% | |
TTGAGGGATTGGGGGTTGTA+TGG | + | chr5.3:70071187-70071206 | MS.gene37868:CDS | 50.0% | |
TTGCCAAATCACGGGTCACA+CGG | + | chr5.3:70071132-70071151 | MS.gene37868:CDS | 50.0% | |
TTTGGCAAGCATAGCTCGAG+AGG | + | chr5.3:70072248-70072267 | MS.gene37868:CDS | 50.0% | |
! | GAGGTGTTCACCATTGGGAA+AGG | + | chr5.3:70071757-70071776 | MS.gene37868:CDS | 50.0% |
! | TGCACGCAAGACTGGTTGAA+AGG | + | chr5.3:70072384-70072403 | MS.gene37868:CDS | 50.0% |
!! | ATGGCAGAGGTGTTCACCAT+TGG | + | chr5.3:70071751-70071770 | MS.gene37868:CDS | 50.0% |
!! | TGGCAGAGGTGTTCACCATT+GGG | + | chr5.3:70071752-70071771 | MS.gene37868:CDS | 50.0% |
ACACCCAAGGGACCCAATCA+AGG | + | chr5.3:70070726-70070745 | MS.gene37868:CDS | 55.0% | |
CACAAAGCGGAAAGGGAGCT+CGG | - | chr5.3:70070858-70070877 | None:intergenic | 55.0% | |
GCAAAATGCAGTTTCGCCCG+TGG | - | chr5.3:70071916-70071935 | None:intergenic | 55.0% | |
GCCCGGTTTCTTGACTGTAG+TGG | - | chr5.3:70072107-70072126 | None:intergenic | 55.0% | |
GGTCACACGGGAGACATGTT+AGG | + | chr5.3:70071145-70071164 | MS.gene37868:CDS | 55.0% | |
TCAGAGTCGGCATTCAGCAC+TGG | + | chr5.3:70072300-70072319 | MS.gene37868:CDS | 55.0% | |
TGCCAAATCACGGGTCACAC+GGG | + | chr5.3:70071133-70071152 | MS.gene37868:CDS | 55.0% | |
!! | GGCATTCAGCACTGGTGGAA+GGG | + | chr5.3:70072308-70072327 | MS.gene37868:CDS | 55.0% |
!! | TCACAGAGGTACCCGGCATA+GGG | + | chr5.3:70070591-70070610 | MS.gene37868:CDS | 55.0% |
!! | TTCACAGAGGTACCCGGCAT+AGG | + | chr5.3:70070590-70070609 | MS.gene37868:CDS | 55.0% |
CGAGCTCCCTTTCCGCTTTG+TGG | + | chr5.3:70070856-70070875 | MS.gene37868:CDS | 60.0% | |
CGTGAGGGGATGTCGAATCG+AGG | - | chr5.3:70070920-70070939 | None:intergenic | 60.0% | |
CTCCCGTGTGACCCGTGATT+TGG | - | chr5.3:70071138-70071157 | None:intergenic | 60.0% | |
! | GAGTCGGCATTCAGCACTGG+TGG | + | chr5.3:70072303-70072322 | MS.gene37868:CDS | 60.0% |
!! | CGGCATTCAGCACTGGTGGA+AGG | + | chr5.3:70072307-70072326 | MS.gene37868:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 70070440 | 70072595 | 70070440 | ID=MS.gene37868 |
chr5.3 | mRNA | 70070440 | 70072595 | 70070440 | ID=MS.gene37868.t1;Parent=MS.gene37868 |
chr5.3 | exon | 70070440 | 70072465 | 70070440 | ID=MS.gene37868.t1.exon1;Parent=MS.gene37868.t1 |
chr5.3 | CDS | 70070440 | 70072465 | 70070440 | ID=cds.MS.gene37868.t1;Parent=MS.gene37868.t1 |
chr5.3 | exon | 70072558 | 70072595 | 70072558 | ID=MS.gene37868.t1.exon2;Parent=MS.gene37868.t1 |
chr5.3 | CDS | 70072558 | 70072595 | 70072558 | ID=cds.MS.gene37868.t1;Parent=MS.gene37868.t1 |
Gene Sequence |
Protein sequence |