AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37868


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37868.t1 MTR_4g120840 39.362 94 56 1 122 214 12 105 2.51e-15 72.8
MS.gene37868.t1 MTR_4g107900 36.893 103 62 1 84 186 75 174 1.56e-14 72.8
MS.gene37868.t1 MTR_7g106390 36.893 103 62 1 84 186 75 174 1.58e-14 72.8
MS.gene37868.t1 MTR_6g027800 42.254 71 41 0 116 186 25 95 1.86e-13 67.8
MS.gene37868.t1 MTR_5g023055 38.889 90 52 1 84 173 21 107 3.69e-13 66.6
MS.gene37868.t1 MTR_3g020520 93.750 32 2 0 644 675 1 32 1.01e-11 67.8
MS.gene37868.t1 MTR_3g020520 93.750 32 2 0 644 675 1 32 1.09e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37868.t1 AT3G42170 27.760 634 411 18 43 654 44 652 1.70e-76 259
MS.gene37868.t1 AT3G42170 27.760 634 411 18 43 654 66 674 3.33e-76 258
MS.gene37868.t1 AT1G18560 22.866 656 428 23 63 683 68 680 1.51e-30 128

Find 152 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAGTGCTTCCACCATTT+TGG 0.101195 5.3:-70072361 None:intergenic
CTTAACTAGATATCCTATTT+TGG 0.165624 5.3:+70072230 MS.gene37868:CDS
AGATTCGTCATGCTGTTAAA+TGG 0.226041 5.3:+70071401 MS.gene37868:CDS
AATCAATAGCAAGATATTTA+AGG 0.228288 5.3:-70071875 None:intergenic
CGAGCTATGCTTGCCAAAAT+AGG 0.230959 5.3:-70072243 None:intergenic
TGGGACAATCACGTCCTAAA+TGG 0.268359 5.3:+70071289 MS.gene37868:CDS
TTCCGGTGCTTGCATATAAA+AGG 0.273137 5.3:-70071951 None:intergenic
AATTAAGTTCAATAAGTATT+GGG 0.303044 5.3:+70071840 MS.gene37868:CDS
TTAAACCTTATTGTGAAATC+TGG 0.306371 5.3:+70071346 MS.gene37868:CDS
CGAGCTCCCTTTCCGCTTTG+TGG 0.313857 5.3:+70070856 MS.gene37868:CDS
TGCATAACATGATGGGTTCT+TGG 0.314314 5.3:+70071269 MS.gene37868:CDS
TACTTGTCTAACACCCAAAA+TGG 0.319891 5.3:+70072347 MS.gene37868:CDS
TGTGAACATAATCCCCATTT+AGG 0.321864 5.3:-70071303 None:intergenic
TCAAGCCAGATTTCACAATA+AGG 0.329442 5.3:-70071351 None:intergenic
CTGACATCAATTTGTCCTTC+AGG 0.332776 5.3:-70071984 None:intergenic
GTACCCGGCATAGGGTTAAA+TGG 0.333425 5.3:+70070599 MS.gene37868:CDS
AAATCAACTTCTTTCTTGTA+AGG 0.340231 5.3:-70072180 None:intergenic
AAATCCACAATTCGTTTGTC+TGG 0.342991 5.3:+70071700 MS.gene37868:CDS
TGACACTTATTTGAGGGATT+GGG 0.351965 5.3:+70071177 MS.gene37868:CDS
AGAAGGATGACGATGATATT+TGG 0.354320 5.3:+70072079 MS.gene37868:CDS
ATACATTGAGGCGTGACATC+TGG 0.356810 5.3:+70070942 MS.gene37868:CDS
TTGACACTTATTTGAGGGAT+TGG 0.369677 5.3:+70071176 MS.gene37868:CDS
CAAATCCTCGCCATCTAGAT+TGG 0.370694 5.3:+70071426 MS.gene37868:CDS
TTTCCTTGATTGGGTCCCTT+GGG 0.382544 5.3:-70070729 None:intergenic
GGCCCTCTATATTGAGGAGT+TGG 0.393948 5.3:+70070964 MS.gene37868:CDS
TGTGACCAGTGCTTCGTATA+TGG 0.396163 5.3:+70071732 MS.gene37868:CDS
CCTCAGCTCATTGTAATTAG+TGG 0.398098 5.3:+70070650 MS.gene37868:CDS
CACTTGTTTGCACGCAAGAC+TGG 0.399218 5.3:+70072376 MS.gene37868:CDS
GGGACAATCACGTCCTAAAT+GGG 0.402021 5.3:+70071290 MS.gene37868:CDS
GCATAACATGATGGGTTCTT+GGG 0.406939 5.3:+70071270 MS.gene37868:CDS
AGGGTTAAATGGAAAGAAAA+AGG 0.414904 5.3:+70070610 MS.gene37868:CDS
ATGGAATAACAGATGAAGAT+TGG 0.418977 5.3:+70071635 MS.gene37868:CDS
GACACTTATTTGAGGGATTG+GGG 0.420586 5.3:+70071178 MS.gene37868:CDS
CTCCCGTGTGACCCGTGATT+TGG 0.421704 5.3:-70071135 None:intergenic
TATTGTGAAATCTGGCTTGA+AGG 0.426745 5.3:+70071354 MS.gene37868:CDS
GCCCTCTATATTGAGGAGTT+GGG 0.431063 5.3:+70070965 MS.gene37868:CDS
TCGATATTTGCATAACATGA+TGG 0.431257 5.3:+70071261 MS.gene37868:CDS
ATCGTCATCCTTCTCATGCC+TGG 0.434264 5.3:-70072070 None:intergenic
CTTTCCATTTAACCCTATGC+CGG 0.438574 5.3:-70070603 None:intergenic
GGTCACATTTCGTCGAGAAA+TGG 0.442539 5.3:+70071597 MS.gene37868:CDS
TCCCACTACAGTCAAGAAAC+CGG 0.446268 5.3:+70072102 MS.gene37868:CDS
AAATTAAGTTCAATAAGTAT+TGG 0.447605 5.3:+70071839 MS.gene37868:CDS
AATAGGATATCTAGTTAAGT+TGG 0.452293 5.3:-70072226 None:intergenic
GGTCACACGGGAGACATGTT+AGG 0.453943 5.3:+70071145 MS.gene37868:CDS
GATTCGTCATGCTGTTAAAT+GGG 0.454005 5.3:+70071402 MS.gene37868:CDS
AAAGGCCTTTCTATACTTCA+AGG 0.455082 5.3:-70071554 None:intergenic
TCCCCAACTCCTCAATATAG+AGG 0.461107 5.3:-70070967 None:intergenic
AGCAAGATATTTAAGGTGCC+TGG 0.463597 5.3:-70071868 None:intergenic
AATCATTACATCATTTGCCT+TGG 0.464135 5.3:-70071239 None:intergenic
TGGCAGAGGTGTTCACCATT+GGG 0.469417 5.3:+70071752 MS.gene37868:CDS
CGATATTTGCATAACATGAT+GGG 0.471153 5.3:+70071262 MS.gene37868:CDS
AATAAGTATTGGGGAGATCC+AGG 0.471916 5.3:+70071850 MS.gene37868:CDS
ATATGTTGACACTTATTTGA+GGG 0.475799 5.3:+70071171 MS.gene37868:CDS
ATGGCAGAGGTGTTCACCAT+TGG 0.479243 5.3:+70071751 MS.gene37868:CDS
CCCGGTTTCTTGACTGTAGT+GGG 0.481086 5.3:-70072103 None:intergenic
CATGTTCCACAAAGCGGAAA+GGG 0.481863 5.3:-70070862 None:intergenic
AGTACAACAGCACCTTTGTA+TGG 0.483326 5.3:-70071484 None:intergenic
TGGAATAACAGATGAAGATT+GGG 0.483610 5.3:+70071636 MS.gene37868:CDS
AAGGGACCCAATCAAGGAAA+AGG 0.488607 5.3:+70070732 MS.gene37868:CDS
CTCAATGTATTCAATGTTGA+CGG 0.491868 5.3:+70071528 MS.gene37868:CDS
CTATTCAAAATTTGATCAAG+AGG 0.496012 5.3:+70070796 MS.gene37868:CDS
AAGGGATCAACAAGCATATG+AGG 0.497638 5.3:+70071776 MS.gene37868:CDS
GTTGTATGGTAAGATATTAA+CGG 0.503435 5.3:+70071201 MS.gene37868:CDS
TCAGAGTCGGCATTCAGCAC+TGG 0.509438 5.3:+70072300 MS.gene37868:CDS
GTTTACCTTTCTCCAATCGA+TGG 0.510235 5.3:-70072449 None:intergenic
GCCCGGTTTCTTGACTGTAG+TGG 0.511265 5.3:-70072104 None:intergenic
TCACAGAGGTACCCGGCATA+GGG 0.517991 5.3:+70070591 MS.gene37868:CDS
TTCACAGAGGTACCCGGCAT+AGG 0.518747 5.3:+70070590 MS.gene37868:CDS
ACACCCAAGGGACCCAATCA+AGG 0.520129 5.3:+70070726 MS.gene37868:CDS
CACAAAGCGGAAAGGGAGCT+CGG 0.522672 5.3:-70070855 None:intergenic
GAACATGATGTTCAATCTAC+TGG 0.523261 5.3:+70070530 MS.gene37868:CDS
AAAATTTATGTTCAATATGG+TGG 0.524749 5.3:+70072015 MS.gene37868:CDS
TACATTGAGGCGTGACATCT+GGG 0.528439 5.3:+70070943 MS.gene37868:CDS
GCATTGAGGTTTGTATCTTG+TGG 0.528484 5.3:-70070470 None:intergenic
AGTGGTATGTGGAATCATCT+AGG 0.530045 5.3:+70070677 MS.gene37868:CDS
TGCACGCAAGACTGGTTGAA+AGG 0.530842 5.3:+70072384 MS.gene37868:CDS
ATTAAGTTCAATAAGTATTG+GGG 0.531652 5.3:+70071841 MS.gene37868:CDS
AATATGTTGACACTTATTTG+AGG 0.532577 5.3:+70071170 MS.gene37868:CDS
GAGGTGTTCACCATTGGGAA+AGG 0.533854 5.3:+70071757 MS.gene37868:CDS
CGGCATTCAGCACTGGTGGA+AGG 0.534250 5.3:+70072307 MS.gene37868:CDS
AGATCCAGACAAACGAATTG+TGG 0.535242 5.3:-70071704 None:intergenic
ATCAACTTTAATCATCTAAG+TGG 0.535282 5.3:-70072580 None:intergenic
CCTTGATGAGATCCATCGAT+TGG 0.535680 5.3:+70072437 MS.gene37868:CDS
TTGCCAAATCACGGGTCACA+CGG 0.540401 5.3:+70071132 MS.gene37868:CDS
TTTCCATTTAACCCTATGCC+GGG 0.547327 5.3:-70070602 None:intergenic
GAGATCCATCGATTGGAGAA+AGG 0.548419 5.3:+70072444 MS.gene37868:CDS
CTTGTTGATCCCTTTCCCAA+TGG 0.550514 5.3:-70071767 None:intergenic
CTCAGCTCATTGTAATTAGT+GGG 0.551596 5.3:+70070651 MS.gene37868:CDS
AGGTGTTCACCATTGGGAAA+GGG 0.555935 5.3:+70071758 MS.gene37868:CDS
GCAAGACTGGTTGAAAGGAA+AGG 0.557171 5.3:+70072389 MS.gene37868:CDS
GCAAAATGCAGTTTCGCCCG+TGG 0.559044 5.3:-70071913 None:intergenic
GGCATTCAGCACTGGTGGAA+GGG 0.561125 5.3:+70072308 MS.gene37868:CDS
ATGGAAGAGAAAACAACGCA+TGG 0.563172 5.3:+70071616 MS.gene37868:CDS
TACTTGATGTTGACACTCGT+TGG 0.565341 5.3:+70071503 MS.gene37868:CDS
TTTATAAAACAACTCAAGCA+AGG 0.566250 5.3:-70071680 None:intergenic
CTCTGCCATATACGAAGCAC+TGG 0.569623 5.3:-70071737 None:intergenic
TCATGTTCCACAAAGCGGAA+AGG 0.569949 5.3:-70070863 None:intergenic
CCCTCTATATTGAGGAGTTG+GGG 0.574321 5.3:+70070966 MS.gene37868:CDS
CAGTGCTTCGTATATGGCAG+AGG 0.574586 5.3:+70071738 MS.gene37868:CDS
CCAATCGATGGATCTCATCA+AGG 0.575637 5.3:-70072437 None:intergenic
CGCCTCAATGTATATCGTGA+GGG 0.576371 5.3:-70070932 None:intergenic
CATCTGGGCCCTCTATATTG+AGG 0.577592 5.3:+70070958 MS.gene37868:CDS
TCTGAAGCTACTGTAGATGC+AGG 0.580487 5.3:-70072282 None:intergenic
AAGTTCTCACTAATTGCGCT+CGG 0.582273 5.3:-70070823 None:intergenic
GAGTCGGCATTCAGCACTGG+TGG 0.583771 5.3:+70072303 MS.gene37868:CDS
ACACTTATTTGAGGGATTGG+GGG 0.584183 5.3:+70071179 MS.gene37868:CDS
TTAGTGGGACAAGTGGTATG+TGG 0.585239 5.3:+70070666 MS.gene37868:CDS
GGTTGCCTTGAAGTATAGAA+AGG 0.587124 5.3:+70071549 MS.gene37868:CDS
TTTGGCAAGCATAGCTCGAG+AGG 0.591224 5.3:+70072248 MS.gene37868:CDS
GTAACAAGCGGTCTAATGTG+TGG 0.592211 5.3:+70070561 MS.gene37868:CDS
CCCCAACTCCTCAATATAGA+GGG 0.593431 5.3:-70070966 None:intergenic
CCCACTACAGTCAAGAAACC+GGG 0.594759 5.3:+70072103 MS.gene37868:CDS
TAACAAGCGGTCTAATGTGT+GGG 0.599129 5.3:+70070562 MS.gene37868:CDS
GAGTACAAATAAGTACATCA+TGG 0.599583 5.3:+70071798 MS.gene37868:CDS
TGAGTTTGACAACAGATACA+TGG 0.600827 5.3:+70071023 MS.gene37868:CDS
CTCTTCAGAAAACAAGTGGA+GGG 0.603788 5.3:-70072412 None:intergenic
ACTAGAAACCAGGCATGAGA+AGG 0.604174 5.3:+70072062 MS.gene37868:CDS
TATAACAATGGTGACACCCA+AGG 0.604425 5.3:+70070713 MS.gene37868:CDS
TTCACGATCAACAAAATGAA+CGG 0.605466 5.3:-70071080 None:intergenic
GGTCCTCTTCAGAAAACAAG+TGG 0.606377 5.3:-70072416 None:intergenic
TTTAGAATCAGAAACATGCC+CGG 0.607609 5.3:-70072121 None:intergenic
TGTGAAATCTGGCTTGAAGG+AGG 0.610118 5.3:+70071357 MS.gene37868:CDS
ATTCTTCATGTTCCACAAAG+CGG 0.610672 5.3:-70070868 None:intergenic
CGGAAAAGCTAAACACCTGA+AGG 0.611015 5.3:+70071969 MS.gene37868:CDS
CACTAATTACAATGAGCTGA+GGG 0.616686 5.3:-70070649 None:intergenic
CCTCTTCAGAAAACAAGTGG+AGG 0.617808 5.3:-70072413 None:intergenic
GAACATTTCACAGAGGTACC+CGG 0.617881 5.3:+70070584 MS.gene37868:CDS
TTGTCTAACACCCAAAATGG+TGG 0.621592 5.3:+70072350 MS.gene37868:CDS
ATCTACAGTAGCTTCAGAGT+CGG 0.621759 5.3:+70072287 MS.gene37868:CDS
ATTGTAATTAGTGGGACAAG+TGG 0.626484 5.3:+70070659 MS.gene37868:CDS
TGCCAAATCACGGGTCACAC+GGG 0.627003 5.3:+70071133 MS.gene37868:CDS
ACGCCTCAATGTATATCGTG+AGG 0.627733 5.3:-70070933 None:intergenic
TCGTACGCTTAACTTGTGAA+AGG 0.630292 5.3:-70071572 None:intergenic
CCACTAATTACAATGAGCTG+AGG 0.632249 5.3:-70070650 None:intergenic
TTATAAAACAACTCAAGCAA+GGG 0.634094 5.3:-70071679 None:intergenic
AATCTAGTCTACTAGAAACC+AGG 0.634464 5.3:+70072052 MS.gene37868:CDS
GATGAGAAAATTCCATACAA+AGG 0.635607 5.3:+70071472 MS.gene37868:CDS
ATAACAATGGTGACACCCAA+GGG 0.637467 5.3:+70070714 MS.gene37868:CDS
ATAGTTCATTCGACGCATTG+AGG 0.641461 5.3:-70070484 None:intergenic
TCACAAGTTAAGCGTACGAG+AGG 0.647053 5.3:+70071576 MS.gene37868:CDS
TCCCCTCACGATATACATTG+AGG 0.649335 5.3:+70070930 MS.gene37868:CDS
TAAGATATTAACGGTAACTG+TGG 0.649394 5.3:+70071210 MS.gene37868:CDS
GCCTCAATGTATATCGTGAG+GGG 0.653089 5.3:-70070931 None:intergenic
GGTAACTGTGGATAATGCCA+AGG 0.654848 5.3:+70071222 MS.gene37868:CDS
AGATGCACTAAGTATAACAA+TGG 0.657414 5.3:+70070701 MS.gene37868:CDS
GGACAATCACGTCCTAAATG+GGG 0.660028 5.3:+70071291 MS.gene37868:CDS
CGTGAGGGGATGTCGAATCG+AGG 0.661682 5.3:-70070917 None:intergenic
ATGGGGATTATGTTCACATG+CGG 0.678091 5.3:+70071308 MS.gene37868:CDS
CTGGCAACACTAGTAACAAG+CGG 0.678698 5.3:+70070549 MS.gene37868:CDS
GGCTTGAAGGAGGATAAACA+AGG 0.683086 5.3:+70071367 MS.gene37868:CDS
GCTTGAAGGAGGATAAACAA+GGG 0.733936 5.3:+70071368 MS.gene37868:CDS
TGTGTGGGAACATTTCACAG+AGG 0.805810 5.3:+70070577 MS.gene37868:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAGTTCAATAAGTAT+TGG + chr5.3:70071839-70071858 MS.gene37868:CDS 15.0%
!! AATTAAGTTCAATAAGTATT+GGG + chr5.3:70071840-70071859 MS.gene37868:CDS 15.0%
!! AGAAAAATTTATGTTCAATA+TGG + chr5.3:70072012-70072031 MS.gene37868:CDS 15.0%
!! AAAATTTATGTTCAATATGG+TGG + chr5.3:70072015-70072034 MS.gene37868:CDS 20.0%
!! AATCAATAGCAAGATATTTA+AGG - chr5.3:70071878-70071897 None:intergenic 20.0%
!!! ATTAAGTTCAATAAGTATTG+GGG + chr5.3:70071841-70071860 MS.gene37868:CDS 20.0%
!!! GATTCATATTTTCAACATTT+TGG + chr5.3:70072507-70072526 MS.gene37868:intron 20.0%
! AAAAAAGACTTGAAGAATTG+TGG + chr5.3:70070995-70071014 MS.gene37868:CDS 25.0%
! AAATCAACTTCTTTCTTGTA+AGG - chr5.3:70072183-70072202 None:intergenic 25.0%
! AAGGAGAAAAATCGTTAAAA+AGG + chr5.3:70070751-70070770 MS.gene37868:CDS 25.0%
! AATAGGATATCTAGTTAAGT+TGG - chr5.3:70072229-70072248 None:intergenic 25.0%
! AATATGTTGACACTTATTTG+AGG + chr5.3:70071170-70071189 MS.gene37868:CDS 25.0%
! AGGAGAAAAATCGTTAAAAA+GGG + chr5.3:70070752-70070771 MS.gene37868:CDS 25.0%
! ATATGTTGACACTTATTTGA+GGG + chr5.3:70071171-70071190 MS.gene37868:CDS 25.0%
! CTATTCAAAATTTGATCAAG+AGG + chr5.3:70070796-70070815 MS.gene37868:CDS 25.0%
! GTTGTATGGTAAGATATTAA+CGG + chr5.3:70071201-70071220 MS.gene37868:CDS 25.0%
! TTAAACCTTATTGTGAAATC+TGG + chr5.3:70071346-70071365 MS.gene37868:CDS 25.0%
! TTATAAAACAACTCAAGCAA+GGG - chr5.3:70071682-70071701 None:intergenic 25.0%
! TTTATAAAACAACTCAAGCA+AGG - chr5.3:70071683-70071702 None:intergenic 25.0%
!! CTTAACTAGATATCCTATTT+TGG + chr5.3:70072230-70072249 MS.gene37868:CDS 25.0%
!! TGATCAAATTTTGAATAGCT+TGG - chr5.3:70070794-70070813 None:intergenic 25.0%
AATCATTACATCATTTGCCT+TGG - chr5.3:70071242-70071261 None:intergenic 30.0%
AGATGCACTAAGTATAACAA+TGG + chr5.3:70070701-70070720 MS.gene37868:CDS 30.0%
AGGGTTAAATGGAAAGAAAA+AGG + chr5.3:70070610-70070629 MS.gene37868:CDS 30.0%
ATGGAATAACAGATGAAGAT+TGG + chr5.3:70071635-70071654 MS.gene37868:CDS 30.0%
CGATATTTGCATAACATGAT+GGG + chr5.3:70071262-70071281 MS.gene37868:CDS 30.0%
CTCAATGTATTCAATGTTGA+CGG + chr5.3:70071528-70071547 MS.gene37868:CDS 30.0%
GAGTACAAATAAGTACATCA+TGG + chr5.3:70071798-70071817 MS.gene37868:CDS 30.0%
GATGAGAAAATTCCATACAA+AGG + chr5.3:70071472-70071491 MS.gene37868:CDS 30.0%
TAAGATATTAACGGTAACTG+TGG + chr5.3:70071210-70071229 MS.gene37868:CDS 30.0%
TCGATATTTGCATAACATGA+TGG + chr5.3:70071261-70071280 MS.gene37868:CDS 30.0%
TGGAATAACAGATGAAGATT+GGG + chr5.3:70071636-70071655 MS.gene37868:CDS 30.0%
TTCACGATCAACAAAATGAA+CGG - chr5.3:70071083-70071102 None:intergenic 30.0%
! ATAAACTTTTGCCAAATCAC+GGG + chr5.3:70071124-70071143 MS.gene37868:CDS 30.0%
! ATGAACTTTTCCAATCTAGA+TGG - chr5.3:70071439-70071458 None:intergenic 30.0%
! CATAAACTTTTGCCAAATCA+CGG + chr5.3:70071123-70071142 MS.gene37868:CDS 30.0%
! TTTTCTCCTTTTCCTTGATT+GGG - chr5.3:70070741-70070760 None:intergenic 30.0%
! TTTTTCTCCTTTTCCTTGAT+TGG - chr5.3:70070742-70070761 None:intergenic 30.0%
!! GAAGTTGATTTTGACATCTT+AGG + chr5.3:70072192-70072211 MS.gene37868:CDS 30.0%
!! TTGATTTTGACATCTTAGGT+TGG + chr5.3:70072196-70072215 MS.gene37868:CDS 30.0%
AAAGGCCTTTCTATACTTCA+AGG - chr5.3:70071557-70071576 None:intergenic 35.0%
AAATCCACAATTCGTTTGTC+TGG + chr5.3:70071700-70071719 MS.gene37868:CDS 35.0%
AATCTAGTCTACTAGAAACC+AGG + chr5.3:70072052-70072071 MS.gene37868:CDS 35.0%
AGAAGGATGACGATGATATT+TGG + chr5.3:70072079-70072098 MS.gene37868:CDS 35.0%
AGATTCGTCATGCTGTTAAA+TGG + chr5.3:70071401-70071420 MS.gene37868:CDS 35.0%
ATTCTTCATGTTCCACAAAG+CGG - chr5.3:70070871-70070890 None:intergenic 35.0%
ATTGTAATTAGTGGGACAAG+TGG + chr5.3:70070659-70070678 MS.gene37868:CDS 35.0%
CACTAATTACAATGAGCTGA+GGG - chr5.3:70070652-70070671 None:intergenic 35.0%
CTCAGCTCATTGTAATTAGT+GGG + chr5.3:70070651-70070670 MS.gene37868:CDS 35.0%
GAACATGATGTTCAATCTAC+TGG + chr5.3:70070530-70070549 MS.gene37868:CDS 35.0%
GATTCGTCATGCTGTTAAAT+GGG + chr5.3:70071402-70071421 MS.gene37868:CDS 35.0%
TACTTGTCTAACACCCAAAA+TGG + chr5.3:70072347-70072366 MS.gene37868:CDS 35.0%
TCAAGCCAGATTTCACAATA+AGG - chr5.3:70071354-70071373 None:intergenic 35.0%
TGACACTTATTTGAGGGATT+GGG + chr5.3:70071177-70071196 MS.gene37868:CDS 35.0%
TGAGTTTGACAACAGATACA+TGG + chr5.3:70071023-70071042 MS.gene37868:CDS 35.0%
TGTGAACATAATCCCCATTT+AGG - chr5.3:70071306-70071325 None:intergenic 35.0%
TTGACACTTATTTGAGGGAT+TGG + chr5.3:70071176-70071195 MS.gene37868:CDS 35.0%
! TATTGTGAAATCTGGCTTGA+AGG + chr5.3:70071354-70071373 MS.gene37868:CDS 35.0%
! TTTAGAATCAGAAACATGCC+CGG - chr5.3:70072124-70072143 None:intergenic 35.0%
!! TTGCTTTTGTTCTTGATCCA+CGG + chr5.3:70071896-70071915 MS.gene37868:CDS 35.0%
!! TTTTGGGTGTTAGACAAGTA+CGG - chr5.3:70072347-70072366 None:intergenic 35.0%
!!! ATTTTGACATCTTAGGTTGG+TGG + chr5.3:70072199-70072218 MS.gene37868:CDS 35.0%
AAGGGATCAACAAGCATATG+AGG + chr5.3:70071776-70071795 MS.gene37868:CDS 40.0%
AAGTTCTCACTAATTGCGCT+CGG - chr5.3:70070826-70070845 None:intergenic 40.0%
ACACTTATTTGAGGGATTGG+GGG + chr5.3:70071179-70071198 MS.gene37868:CDS 40.0%
AGATCCAGACAAACGAATTG+TGG - chr5.3:70071707-70071726 None:intergenic 40.0%
AGTACAACAGCACCTTTGTA+TGG - chr5.3:70071487-70071506 None:intergenic 40.0%
AGTGGTATGTGGAATCATCT+AGG + chr5.3:70070677-70070696 MS.gene37868:CDS 40.0%
ATAACAATGGTGACACCCAA+GGG + chr5.3:70070714-70070733 MS.gene37868:CDS 40.0%
ATAGTTCATTCGACGCATTG+AGG - chr5.3:70070487-70070506 None:intergenic 40.0%
ATCTACAGTAGCTTCAGAGT+CGG + chr5.3:70072287-70072306 MS.gene37868:CDS 40.0%
ATGGAAGAGAAAACAACGCA+TGG + chr5.3:70071616-70071635 MS.gene37868:CDS 40.0%
ATGGGGATTATGTTCACATG+CGG + chr5.3:70071308-70071327 MS.gene37868:CDS 40.0%
CCACTAATTACAATGAGCTG+AGG - chr5.3:70070653-70070672 None:intergenic 40.0%
CCTCAGCTCATTGTAATTAG+TGG + chr5.3:70070650-70070669 MS.gene37868:CDS 40.0%
CTCTTCAGAAAACAAGTGGA+GGG - chr5.3:70072415-70072434 None:intergenic 40.0%
CTGACATCAATTTGTCCTTC+AGG - chr5.3:70071987-70072006 None:intergenic 40.0%
CTTTCCATTTAACCCTATGC+CGG - chr5.3:70070606-70070625 None:intergenic 40.0%
GACACTTATTTGAGGGATTG+GGG + chr5.3:70071178-70071197 MS.gene37868:CDS 40.0%
GCATTGAGGTTTGTATCTTG+TGG - chr5.3:70070473-70070492 None:intergenic 40.0%
GCTTGAAGGAGGATAAACAA+GGG + chr5.3:70071368-70071387 MS.gene37868:CDS 40.0%
GGTTGCCTTGAAGTATAGAA+AGG + chr5.3:70071549-70071568 MS.gene37868:CDS 40.0%
GTTTACCTTTCTCCAATCGA+TGG - chr5.3:70072452-70072471 None:intergenic 40.0%
TAACAAGCGGTCTAATGTGT+GGG + chr5.3:70070562-70070581 MS.gene37868:CDS 40.0%
TACTTGATGTTGACACTCGT+TGG + chr5.3:70071503-70071522 MS.gene37868:CDS 40.0%
TATAACAATGGTGACACCCA+AGG + chr5.3:70070713-70070732 MS.gene37868:CDS 40.0%
TTCCGGTGCTTGCATATAAA+AGG - chr5.3:70071954-70071973 None:intergenic 40.0%
TTGTCTAACACCCAAAATGG+TGG + chr5.3:70072350-70072369 MS.gene37868:CDS 40.0%
TTTCCATTTAACCCTATGCC+GGG - chr5.3:70070605-70070624 None:intergenic 40.0%
! AACAAGTGCTTCCACCATTT+TGG - chr5.3:70072364-70072383 None:intergenic 40.0%
! ACAAGTGCTTCCACCATTTT+GGG - chr5.3:70072363-70072382 None:intergenic 40.0%
! AGCAAGATATTTAAGGTGCC+TGG - chr5.3:70071871-70071890 None:intergenic 40.0%
! GACCTTTTATATGCAAGCAC+CGG + chr5.3:70071949-70071968 MS.gene37868:CDS 40.0%
! TGCTTTTGTTCTTGATCCAC+GGG + chr5.3:70071897-70071916 MS.gene37868:CDS 40.0%
!! AATAAGTATTGGGGAGATCC+AGG + chr5.3:70071850-70071869 MS.gene37868:CDS 40.0%
!! GCATAACATGATGGGTTCTT+GGG + chr5.3:70071270-70071289 MS.gene37868:CDS 40.0%
!! TCGTACGCTTAACTTGTGAA+AGG - chr5.3:70071575-70071594 None:intergenic 40.0%
!! TGCATAACATGATGGGTTCT+TGG + chr5.3:70071269-70071288 MS.gene37868:CDS 40.0%
!!! CTTCAGGTGTTTAGCTTTTC+CGG - chr5.3:70071971-70071990 None:intergenic 40.0%
AAGGGACCCAATCAAGGAAA+AGG + chr5.3:70070732-70070751 MS.gene37868:CDS 45.0%
ACGCCTCAATGTATATCGTG+AGG - chr5.3:70070936-70070955 None:intergenic 45.0%
ACTAGAAACCAGGCATGAGA+AGG + chr5.3:70072062-70072081 MS.gene37868:CDS 45.0%
AGGTGTTCACCATTGGGAAA+GGG + chr5.3:70071758-70071777 MS.gene37868:CDS 45.0%
ATACATTGAGGCGTGACATC+TGG + chr5.3:70070942-70070961 MS.gene37868:CDS 45.0%
CAAATCCTCGCCATCTAGAT+TGG + chr5.3:70071426-70071445 MS.gene37868:CDS 45.0%
CATGTTCCACAAAGCGGAAA+GGG - chr5.3:70070865-70070884 None:intergenic 45.0%
CCAATCGATGGATCTCATCA+AGG - chr5.3:70072440-70072459 None:intergenic 45.0%
CCCCAACTCCTCAATATAGA+GGG - chr5.3:70070969-70070988 None:intergenic 45.0%
CCCTCTATATTGAGGAGTTG+GGG + chr5.3:70070966-70070985 MS.gene37868:CDS 45.0%
CCTCTTCAGAAAACAAGTGG+AGG - chr5.3:70072416-70072435 None:intergenic 45.0%
CCTTGATGAGATCCATCGAT+TGG + chr5.3:70072437-70072456 MS.gene37868:CDS 45.0%
CGAGCTATGCTTGCCAAAAT+AGG - chr5.3:70072246-70072265 None:intergenic 45.0%
CGCCTCAATGTATATCGTGA+GGG - chr5.3:70070935-70070954 None:intergenic 45.0%
CGGAAAAGCTAAACACCTGA+AGG + chr5.3:70071969-70071988 MS.gene37868:CDS 45.0%
CTGGCAACACTAGTAACAAG+CGG + chr5.3:70070549-70070568 MS.gene37868:CDS 45.0%
CTTGTTGATCCCTTTCCCAA+TGG - chr5.3:70071770-70071789 None:intergenic 45.0%
GCCCTCTATATTGAGGAGTT+GGG + chr5.3:70070965-70070984 MS.gene37868:CDS 45.0%
GCCTCAATGTATATCGTGAG+GGG - chr5.3:70070934-70070953 None:intergenic 45.0%
GGACAATCACGTCCTAAATG+GGG + chr5.3:70071291-70071310 MS.gene37868:CDS 45.0%
GGCTTGAAGGAGGATAAACA+AGG + chr5.3:70071367-70071386 MS.gene37868:CDS 45.0%
GGGACAATCACGTCCTAAAT+GGG + chr5.3:70071290-70071309 MS.gene37868:CDS 45.0%
GGTAACTGTGGATAATGCCA+AGG + chr5.3:70071222-70071241 MS.gene37868:CDS 45.0%
GGTCACATTTCGTCGAGAAA+TGG + chr5.3:70071597-70071616 MS.gene37868:CDS 45.0%
GGTCCTCTTCAGAAAACAAG+TGG - chr5.3:70072419-70072438 None:intergenic 45.0%
GTAACAAGCGGTCTAATGTG+TGG + chr5.3:70070561-70070580 MS.gene37868:CDS 45.0%
TACATTGAGGCGTGACATCT+GGG + chr5.3:70070943-70070962 MS.gene37868:CDS 45.0%
TCACAAGTTAAGCGTACGAG+AGG + chr5.3:70071576-70071595 MS.gene37868:CDS 45.0%
TCATGTTCCACAAAGCGGAA+AGG - chr5.3:70070866-70070885 None:intergenic 45.0%
TCCCACTACAGTCAAGAAAC+CGG + chr5.3:70072102-70072121 MS.gene37868:CDS 45.0%
TCCCCAACTCCTCAATATAG+AGG - chr5.3:70070970-70070989 None:intergenic 45.0%
TCCCCTCACGATATACATTG+AGG + chr5.3:70070930-70070949 MS.gene37868:CDS 45.0%
TGGGACAATCACGTCCTAAA+TGG + chr5.3:70071289-70071308 MS.gene37868:CDS 45.0%
TGTGACCAGTGCTTCGTATA+TGG + chr5.3:70071732-70071751 MS.gene37868:CDS 45.0%
TGTGTGGGAACATTTCACAG+AGG + chr5.3:70070577-70070596 MS.gene37868:CDS 45.0%
TTAGTGGGACAAGTGGTATG+TGG + chr5.3:70070666-70070685 MS.gene37868:CDS 45.0%
TTTCCTTGATTGGGTCCCTT+GGG - chr5.3:70070732-70070751 None:intergenic 45.0%
! CTTTTCCAATCTAGATGGCG+AGG - chr5.3:70071434-70071453 None:intergenic 45.0%
! GAGATCCATCGATTGGAGAA+AGG + chr5.3:70072444-70072463 MS.gene37868:CDS 45.0%
! GCAAGACTGGTTGAAAGGAA+AGG + chr5.3:70072389-70072408 MS.gene37868:CDS 45.0%
! TCTGAAGCTACTGTAGATGC+AGG - chr5.3:70072285-70072304 None:intergenic 45.0%
! TGTGAAATCTGGCTTGAAGG+AGG + chr5.3:70071357-70071376 MS.gene37868:CDS 45.0%
! TTTTCCTTGATTGGGTCCCT+TGG - chr5.3:70070733-70070752 None:intergenic 45.0%
!! CCTCCACTTGTTTTCTGAAG+AGG + chr5.3:70072413-70072432 MS.gene37868:CDS 45.0%
!! GAACATTTCACAGAGGTACC+CGG + chr5.3:70070584-70070603 MS.gene37868:CDS 45.0%
ATCGTCATCCTTCTCATGCC+TGG - chr5.3:70072073-70072092 None:intergenic 50.0%
CACTTGTTTGCACGCAAGAC+TGG + chr5.3:70072376-70072395 MS.gene37868:CDS 50.0%
CAGTGCTTCGTATATGGCAG+AGG + chr5.3:70071738-70071757 MS.gene37868:CDS 50.0%
CATCTGGGCCCTCTATATTG+AGG + chr5.3:70070958-70070977 MS.gene37868:CDS 50.0%
CCCACTACAGTCAAGAAACC+GGG + chr5.3:70072103-70072122 MS.gene37868:CDS 50.0%
CCCGGTTTCTTGACTGTAGT+GGG - chr5.3:70072106-70072125 None:intergenic 50.0%
CTCTGCCATATACGAAGCAC+TGG - chr5.3:70071740-70071759 None:intergenic 50.0%
GGCCCTCTATATTGAGGAGT+TGG + chr5.3:70070964-70070983 MS.gene37868:CDS 50.0%
GTACCCGGCATAGGGTTAAA+TGG + chr5.3:70070599-70070618 MS.gene37868:CDS 50.0%
TTGAGGGATTGGGGGTTGTA+TGG + chr5.3:70071187-70071206 MS.gene37868:CDS 50.0%
TTGCCAAATCACGGGTCACA+CGG + chr5.3:70071132-70071151 MS.gene37868:CDS 50.0%
TTTGGCAAGCATAGCTCGAG+AGG + chr5.3:70072248-70072267 MS.gene37868:CDS 50.0%
! GAGGTGTTCACCATTGGGAA+AGG + chr5.3:70071757-70071776 MS.gene37868:CDS 50.0%
! TGCACGCAAGACTGGTTGAA+AGG + chr5.3:70072384-70072403 MS.gene37868:CDS 50.0%
!! ATGGCAGAGGTGTTCACCAT+TGG + chr5.3:70071751-70071770 MS.gene37868:CDS 50.0%
!! TGGCAGAGGTGTTCACCATT+GGG + chr5.3:70071752-70071771 MS.gene37868:CDS 50.0%
ACACCCAAGGGACCCAATCA+AGG + chr5.3:70070726-70070745 MS.gene37868:CDS 55.0%
CACAAAGCGGAAAGGGAGCT+CGG - chr5.3:70070858-70070877 None:intergenic 55.0%
GCAAAATGCAGTTTCGCCCG+TGG - chr5.3:70071916-70071935 None:intergenic 55.0%
GCCCGGTTTCTTGACTGTAG+TGG - chr5.3:70072107-70072126 None:intergenic 55.0%
GGTCACACGGGAGACATGTT+AGG + chr5.3:70071145-70071164 MS.gene37868:CDS 55.0%
TCAGAGTCGGCATTCAGCAC+TGG + chr5.3:70072300-70072319 MS.gene37868:CDS 55.0%
TGCCAAATCACGGGTCACAC+GGG + chr5.3:70071133-70071152 MS.gene37868:CDS 55.0%
!! GGCATTCAGCACTGGTGGAA+GGG + chr5.3:70072308-70072327 MS.gene37868:CDS 55.0%
!! TCACAGAGGTACCCGGCATA+GGG + chr5.3:70070591-70070610 MS.gene37868:CDS 55.0%
!! TTCACAGAGGTACCCGGCAT+AGG + chr5.3:70070590-70070609 MS.gene37868:CDS 55.0%
CGAGCTCCCTTTCCGCTTTG+TGG + chr5.3:70070856-70070875 MS.gene37868:CDS 60.0%
CGTGAGGGGATGTCGAATCG+AGG - chr5.3:70070920-70070939 None:intergenic 60.0%
CTCCCGTGTGACCCGTGATT+TGG - chr5.3:70071138-70071157 None:intergenic 60.0%
! GAGTCGGCATTCAGCACTGG+TGG + chr5.3:70072303-70072322 MS.gene37868:CDS 60.0%
!! CGGCATTCAGCACTGGTGGA+AGG + chr5.3:70072307-70072326 MS.gene37868:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 70070440 70072595 70070440 ID=MS.gene37868
chr5.3 mRNA 70070440 70072595 70070440 ID=MS.gene37868.t1;Parent=MS.gene37868
chr5.3 exon 70070440 70072465 70070440 ID=MS.gene37868.t1.exon1;Parent=MS.gene37868.t1
chr5.3 CDS 70070440 70072465 70070440 ID=cds.MS.gene37868.t1;Parent=MS.gene37868.t1
chr5.3 exon 70072558 70072595 70072558 ID=MS.gene37868.t1.exon2;Parent=MS.gene37868.t1
chr5.3 CDS 70072558 70072595 70072558 ID=cds.MS.gene37868.t1;Parent=MS.gene37868.t1
Gene Sequence

>MS.gene37868

ATGTCGGATAATATCTTAGACTTCACAGTGCCACAAGATACAAACCTCAATGCGTCGAATGAACTATCAAATGAACTTGAATCTAATGCTGAACATGATGTTCAATCTACTGGCAACACTAGTAACAAGCGGTCTAATGTGTGGGAACATTTCACAGAGGTACCCGGCATAGGGTTAAATGGAAAGAAAAAGGCTAAATGCAATTATTGCCCTCAGCTCATTGTAATTAGTGGGACAAGTGGTATGTGGAATCATCTAGGAAGATGCACTAAGTATAACAATGGTGACACCCAAGGGACCCAATCAAGGAAAAGGAGAAAAATCGTTAAAAAGGGTCAAGTTGTTTCATCTCCAAGCTATTCAAAATTTGATCAAGAGGCTTGCCGAGCGCAATTAGTGAGAACTTTTGTGTGTGCCGAGCTCCCTTTCCGCTTTGTGGAACATGAAGAATTTCGAAAGTTGTTGATTATCTTGCAGCCTCGATTCGACATCCCCTCACGATATACATTGAGGCGTGACATCTGGGCCCTCTATATTGAGGAGTTGGGGAAATTGAAAAAAGACTTGAAGAATTGTGGTAGAGTGAGTTTGACAACAGATACATGGACATCAAATCAAAACTTAAGCTACATGAGTTTGACCGTTCATTTTGTTGATCGTGAATTGAAGCTGCACAAGAAAATCATAAACTTTTGCCAAATCACGGGTCACACGGGAGACATGTTAGGTAAATATGTTGACACTTATTTGAGGGATTGGGGGTTGTATGGTAAGATATTAACGGTAACTGTGGATAATGCCAAGGCAAATGATGTAATGATTCGATATTTGCATAACATGATGGGTTCTTGGGACAATCACGTCCTAAATGGGGATTATGTTCACATGCGGTGTTGCACGCATGTATTAAACCTTATTGTGAAATCTGGCTTGAAGGAGGATAAACAAGGGTCTATTTCAAAGATTCGTCATGCTGTTAAATGGGTCAAATCCTCGCCATCTAGATTGGAAAAGTTCATGATATGTGCTTCTGATGAGAAAATTCCATACAAAGGTGCTGTTGTACTTGATGTTGACACTCGTTGGAACTCAATGTATTCAATGTTGACGGTTGCCTTGAAGTATAGAAAGGCCTTTCACAAGTTAAGCGTACGAGAGGTCACATTTCGTCGAGAAATGGAAGAGAAAACAACGCATGGAATAACAGATGAAGATTGGGACTATGTTGAATCAGTGCTTCCCTTGCTTGAGTTGTTTTATAAATCCACAATTCGTTTGTCTGGATCTTTGTATGTGACCAGTGCTTCGTATATGGCAGAGGTGTTCACCATTGGGAAAGGGATCAACAAGCATATGAGGAGTACAAATAAGTACATCATGGAGACAGCAAACAAGATGAAAATTAAGTTCAATAAGTATTGGGGAGATCCAGGCACCTTAAATATCTTGCTATTGATTGCTTTTGTTCTTGATCCACGGGCGAAACTGCATTTTGCTGAATTTTATATTGACCTTTTATATGCAAGCACCGGAAAAGCTAAACACCTGAAGGACAAATTGATGTCAGATTTTAGAAAAATTTATGTTCAATATGGTGGTACAGATTACTCTCAATCTAGTCTACTAGAAACCAGGCATGAGAAGGATGACGATGATATTTGGTCCCACTACAGTCAAGAAACCGGGCATGTTTCTGATTCTAAAGATGAAATTGAAGAATATCTAAAAGAAGCTCGAATGCCTTACAAGAAAGAAGTTGATTTTGACATCTTAGGTTGGTGGAAAGCCAACTTAACTAGATATCCTATTTTGGCAAGCATAGCTCGAGAGGTGTTAGCTATTCCTGCATCTACAGTAGCTTCAGAGTCGGCATTCAGCACTGGTGGAAGGGTTGTTAGTGATTACCGTACTTGTCTAACACCCAAAATGGTGGAAGCACTTGTTTGCACGCAAGACTGGTTGAAAGGAAAGGCCCTCCACTTGTTTTCTGAAGAGGACCTTGATGAGATCCATCGATTGGAGAAAGGTAAACTTACTCGTATCTGTATTATTACTCTTGTGTATTTTGATTCATATTTTCAACATTTTGGTTAATTATATATCTTTTTTTTTTTGTAGAGATAACATCTCAAGAATCTGTCCACTTAGATGATTAA

Protein sequence

>MS.gene37868.t1

MSDNILDFTVPQDTNLNASNELSNELESNAEHDVQSTGNTSNKRSNVWEHFTEVPGIGLNGKKKAKCNYCPQLIVISGTSGMWNHLGRCTKYNNGDTQGTQSRKRRKIVKKGQVVSSPSYSKFDQEACRAQLVRTFVCAELPFRFVEHEEFRKLLIILQPRFDIPSRYTLRRDIWALYIEELGKLKKDLKNCGRVSLTTDTWTSNQNLSYMSLTVHFVDRELKLHKKIINFCQITGHTGDMLGKYVDTYLRDWGLYGKILTVTVDNAKANDVMIRYLHNMMGSWDNHVLNGDYVHMRCCTHVLNLIVKSGLKEDKQGSISKIRHAVKWVKSSPSRLEKFMICASDEKIPYKGAVVLDVDTRWNSMYSMLTVALKYRKAFHKLSVREVTFRREMEEKTTHGITDEDWDYVESVLPLLELFYKSTIRLSGSLYVTSASYMAEVFTIGKGINKHMRSTNKYIMETANKMKIKFNKYWGDPGTLNILLLIAFVLDPRAKLHFAEFYIDLLYASTGKAKHLKDKLMSDFRKIYVQYGGTDYSQSSLLETRHEKDDDDIWSHYSQETGHVSDSKDEIEEYLKEARMPYKKEVDFDILGWWKANLTRYPILASIAREVLAIPASTVASESAFSTGGRVVSDYRTCLTPKMVEALVCTQDWLKGKALHLFSEEDLDEIHRLEKEITSQESVHLDD