Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37984.t1 | XP_003617863.2 | 99.5 | 385 | 2 | 0 | 1 | 385 | 1 | 385 | 1.30E-206 | 728.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37984.t1 | Q9FG70 | 79.9 | 373 | 72 | 2 | 1 | 370 | 1 | 373 | 7.7e-163 | 574.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37984.t1 | G7KEK1 | 99.5 | 385 | 2 | 0 | 1 | 385 | 1 | 385 | 9.6e-207 | 728.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050807 | MS.gene37984 | 0.815113 | 1.09E-51 | -1.69E-46 |
| MS.gene055608 | MS.gene37984 | 0.818145 | 2.28E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37984.t1 | MTR_5g096310 | 99.481 | 385 | 2 | 0 | 1 | 385 | 1 | 385 | 0.0 | 773 |
| MS.gene37984.t1 | MTR_2g038410 | 60.963 | 374 | 142 | 3 | 3 | 373 | 1 | 373 | 2.86e-168 | 475 |
| MS.gene37984.t1 | MTR_2g094640 | 29.683 | 347 | 216 | 5 | 55 | 380 | 10 | 349 | 4.71e-40 | 145 |
| MS.gene37984.t1 | MTR_3g094270 | 28.213 | 319 | 210 | 4 | 73 | 385 | 28 | 333 | 4.02e-38 | 140 |
| MS.gene37984.t1 | MTR_4g058860 | 27.485 | 342 | 219 | 3 | 55 | 371 | 10 | 347 | 3.32e-37 | 138 |
| MS.gene37984.t1 | MTR_3g094260 | 28.339 | 307 | 201 | 4 | 73 | 373 | 28 | 321 | 5.68e-33 | 126 |
| MS.gene37984.t1 | MTR_3g095130 | 28.939 | 311 | 204 | 7 | 62 | 365 | 20 | 320 | 1.94e-28 | 114 |
| MS.gene37984.t1 | MTR_1g026590 | 32.602 | 319 | 202 | 5 | 59 | 369 | 15 | 328 | 4.61e-28 | 113 |
| MS.gene37984.t1 | MTR_5g004620 | 31.833 | 311 | 200 | 6 | 63 | 365 | 21 | 327 | 6.68e-28 | 112 |
| MS.gene37984.t1 | MTR_1g098240 | 27.393 | 303 | 201 | 4 | 46 | 338 | 4 | 297 | 1.53e-25 | 105 |
| MS.gene37984.t1 | MTR_8g092190 | 27.134 | 328 | 216 | 5 | 62 | 375 | 20 | 338 | 1.50e-22 | 97.8 |
| MS.gene37984.t1 | MTR_3g095130 | 27.046 | 281 | 188 | 7 | 92 | 365 | 1 | 271 | 5.39e-20 | 89.4 |
| MS.gene37984.t1 | MTR_3g072380 | 23.585 | 318 | 224 | 5 | 68 | 373 | 27 | 337 | 1.67e-18 | 86.3 |
| MS.gene37984.t1 | MTR_1g030320 | 22.222 | 324 | 233 | 5 | 68 | 383 | 26 | 338 | 5.20e-17 | 81.6 |
| MS.gene37984.t1 | MTR_8g090130 | 29.758 | 289 | 174 | 9 | 68 | 338 | 24 | 301 | 4.25e-13 | 69.7 |
| MS.gene37984.t1 | MTR_2g070400 | 25.786 | 318 | 205 | 13 | 69 | 366 | 24 | 330 | 4.62e-13 | 70.1 |
| MS.gene37984.t1 | MTR_4g101860 | 26.241 | 282 | 195 | 7 | 68 | 339 | 65 | 343 | 6.43e-13 | 69.7 |
| MS.gene37984.t1 | MTR_3g072380 | 26.282 | 156 | 108 | 2 | 68 | 219 | 27 | 179 | 1.08e-12 | 67.8 |
| MS.gene37984.t1 | MTR_3g070000 | 25.850 | 294 | 198 | 10 | 68 | 350 | 37 | 321 | 1.21e-11 | 65.5 |
| MS.gene37984.t1 | MTR_0011s0320 | 25.070 | 355 | 218 | 14 | 40 | 372 | 1 | 329 | 2.88e-11 | 64.7 |
| MS.gene37984.t1 | MTR_7g110380 | 24.606 | 317 | 216 | 9 | 69 | 371 | 28 | 335 | 3.52e-11 | 64.7 |
| MS.gene37984.t1 | MTR_4g018760 | 27.682 | 289 | 182 | 11 | 68 | 339 | 25 | 303 | 5.02e-11 | 63.5 |
| MS.gene37984.t1 | MTR_3g462070 | 25.773 | 291 | 199 | 9 | 60 | 338 | 14 | 299 | 6.37e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37984.t1 | AT5G55950 | 79.893 | 373 | 72 | 2 | 1 | 370 | 1 | 373 | 0.0 | 608 |
| MS.gene37984.t1 | AT5G55950 | 85.911 | 291 | 40 | 1 | 1 | 290 | 1 | 291 | 0.0 | 514 |
| MS.gene37984.t1 | AT5G55950 | 78.914 | 313 | 64 | 1 | 60 | 370 | 1 | 313 | 8.90e-178 | 498 |
| MS.gene37984.t1 | AT5G55950 | 78.644 | 295 | 61 | 1 | 78 | 370 | 1 | 295 | 1.41e-166 | 469 |
| MS.gene37984.t1 | AT5G57100 | 64.897 | 339 | 116 | 1 | 7 | 342 | 12 | 350 | 9.10e-162 | 459 |
| MS.gene37984.t1 | AT5G57100 | 64.808 | 287 | 98 | 1 | 7 | 290 | 12 | 298 | 5.86e-136 | 390 |
| MS.gene37984.t1 | AT5G57100 | 63.043 | 230 | 82 | 1 | 7 | 233 | 12 | 241 | 1.80e-102 | 304 |
| MS.gene37984.t1 | AT5G57100 | 62.996 | 227 | 84 | 0 | 147 | 373 | 40 | 266 | 3.45e-95 | 286 |
| MS.gene37984.t1 | AT2G30460 | 32.432 | 333 | 185 | 8 | 73 | 374 | 28 | 351 | 4.71e-42 | 151 |
| MS.gene37984.t1 | AT2G30460 | 32.432 | 333 | 185 | 8 | 73 | 374 | 28 | 351 | 4.71e-42 | 151 |
| MS.gene37984.t1 | AT1G06890 | 32.456 | 342 | 202 | 9 | 43 | 370 | 2 | 328 | 2.60e-41 | 149 |
| MS.gene37984.t1 | AT1G06890 | 32.456 | 342 | 202 | 9 | 43 | 370 | 2 | 328 | 3.24e-41 | 149 |
| MS.gene37984.t1 | AT1G06890 | 32.456 | 342 | 202 | 9 | 43 | 370 | 2 | 328 | 5.14e-41 | 148 |
| MS.gene37984.t1 | AT1G06890 | 32.456 | 342 | 202 | 9 | 43 | 370 | 2 | 328 | 5.14e-41 | 148 |
| MS.gene37984.t1 | AT2G30460 | 32.797 | 311 | 175 | 7 | 95 | 374 | 23 | 330 | 1.16e-40 | 147 |
| MS.gene37984.t1 | AT2G30460 | 32.797 | 311 | 175 | 7 | 95 | 374 | 23 | 330 | 1.16e-40 | 147 |
| MS.gene37984.t1 | AT2G30460 | 32.797 | 311 | 175 | 7 | 95 | 374 | 23 | 330 | 1.16e-40 | 147 |
| MS.gene37984.t1 | AT2G28315 | 30.363 | 303 | 200 | 3 | 55 | 353 | 10 | 305 | 1.83e-35 | 133 |
| MS.gene37984.t1 | AT2G28315 | 30.032 | 313 | 206 | 4 | 45 | 353 | 2 | 305 | 7.00e-35 | 131 |
| MS.gene37984.t1 | AT5G42420 | 33.013 | 312 | 200 | 4 | 59 | 363 | 18 | 327 | 2.12e-31 | 122 |
| MS.gene37984.t1 | AT1G21070 | 30.448 | 335 | 217 | 6 | 59 | 382 | 18 | 347 | 9.96e-31 | 120 |
| MS.gene37984.t1 | AT4G09810 | 27.003 | 337 | 228 | 7 | 47 | 373 | 5 | 333 | 9.07e-30 | 117 |
| MS.gene37984.t1 | AT1G76670 | 29.598 | 348 | 231 | 5 | 44 | 380 | 2 | 346 | 4.42e-29 | 116 |
| MS.gene37984.t1 | AT1G76670 | 29.598 | 348 | 231 | 5 | 44 | 380 | 2 | 346 | 4.42e-29 | 116 |
| MS.gene37984.t1 | AT1G34020 | 27.019 | 322 | 217 | 7 | 62 | 373 | 20 | 333 | 2.49e-28 | 114 |
| MS.gene37984.t1 | AT1G34020 | 27.019 | 322 | 217 | 7 | 62 | 373 | 20 | 333 | 2.49e-28 | 114 |
| MS.gene37984.t1 | AT1G34020 | 27.019 | 322 | 217 | 7 | 62 | 373 | 20 | 333 | 2.49e-28 | 114 |
| MS.gene37984.t1 | AT2G30460 | 32.000 | 200 | 118 | 5 | 73 | 263 | 28 | 218 | 5.16e-24 | 102 |
| MS.gene37984.t1 | AT4G39390 | 26.627 | 338 | 235 | 6 | 41 | 373 | 4 | 333 | 3.12e-22 | 96.7 |
| MS.gene37984.t1 | AT4G39390 | 26.627 | 338 | 235 | 6 | 41 | 373 | 4 | 333 | 3.12e-22 | 96.7 |
| MS.gene37984.t1 | AT4G39390 | 26.786 | 336 | 233 | 6 | 43 | 373 | 2 | 329 | 5.12e-22 | 96.3 |
| MS.gene37984.t1 | AT4G09810 | 26.715 | 277 | 188 | 6 | 107 | 373 | 5 | 276 | 5.68e-21 | 92.0 |
| MS.gene37984.t1 | AT1G77610 | 24.458 | 323 | 223 | 5 | 68 | 382 | 21 | 330 | 1.37e-20 | 92.0 |
| MS.gene37984.t1 | AT1G21870 | 23.457 | 324 | 227 | 5 | 68 | 383 | 27 | 337 | 2.06e-19 | 89.0 |
| MS.gene37984.t1 | AT4G09810 | 28.846 | 208 | 144 | 2 | 47 | 254 | 5 | 208 | 4.06e-19 | 85.9 |
| MS.gene37984.t1 | AT1G53660 | 28.115 | 313 | 196 | 13 | 69 | 366 | 48 | 346 | 5.43e-14 | 72.8 |
| MS.gene37984.t1 | AT1G53660 | 28.115 | 313 | 196 | 13 | 69 | 366 | 30 | 328 | 6.41e-14 | 72.4 |
| MS.gene37984.t1 | AT1G53660 | 27.667 | 300 | 190 | 12 | 80 | 366 | 9 | 294 | 2.39e-13 | 70.5 |
| MS.gene37984.t1 | AT3G14410 | 28.076 | 317 | 196 | 14 | 69 | 364 | 28 | 333 | 2.23e-12 | 68.2 |
| MS.gene37984.t1 | AT5G25400 | 24.534 | 322 | 214 | 11 | 70 | 372 | 32 | 343 | 2.58e-12 | 67.8 |
| MS.gene37984.t1 | AT1G12500 | 26.241 | 282 | 195 | 7 | 68 | 339 | 71 | 349 | 4.42e-12 | 67.4 |
| MS.gene37984.t1 | AT3G17430 | 26.549 | 339 | 200 | 16 | 69 | 378 | 25 | 343 | 3.90e-11 | 64.3 |
| MS.gene37984.t1 | AT3G17430 | 26.549 | 339 | 200 | 16 | 69 | 378 | 25 | 343 | 3.90e-11 | 64.3 |
| MS.gene37984.t1 | AT3G10290 | 26.690 | 281 | 193 | 7 | 68 | 338 | 70 | 347 | 8.69e-11 | 63.2 |
| MS.gene37984.t1 | AT3G11320 | 27.562 | 283 | 190 | 9 | 68 | 339 | 23 | 301 | 9.94e-11 | 62.8 |
Find 77 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTATAGTTGCAATTATA+TGG | 0.196565 | 5.1:-76830122 | MS.gene37984:CDS |
| TGAACAAATGTGAGGAAAAT+TGG | 0.206523 | 5.1:+76831105 | None:intergenic |
| GATTTAGAGTTCAATTTATT+TGG | 0.233562 | 5.1:-76830144 | MS.gene37984:CDS |
| CGCATTATCCTTCAACTTCA+TGG | 0.275264 | 5.1:-76831301 | MS.gene37984:CDS |
| TTCTAGGAGCTTTGATGCCT+TGG | 0.276040 | 5.1:-76829910 | MS.gene37984:CDS |
| TGGTCAGGTGCCTTGGCATT+AGG | 0.292303 | 5.1:-76829797 | MS.gene37984:CDS |
| ATTTGCACTTGGTGCTGTTA+TGG | 0.295321 | 5.1:-76830989 | MS.gene37984:CDS |
| TTACATCCCACTTGAATGAT+AGG | 0.344646 | 5.1:+76829870 | None:intergenic |
| CTTGGTTGTTATGGGGTTGT+TGG | 0.351383 | 5.1:-76832032 | None:intergenic |
| GACAGTGATGCAGGAGAAAC+AGG | 0.365115 | 5.1:-76831968 | MS.gene37984:intron |
| GGTCAGGTGCCTTGGCATTA+GGG | 0.373196 | 5.1:-76829796 | MS.gene37984:intron |
| GATCATCATGGCAAACAAAT+TGG | 0.383428 | 5.1:-76831268 | MS.gene37984:intron |
| GTCCGCAATATCTTTGTTGT+TGG | 0.384372 | 5.1:+76831331 | None:intergenic |
| GAACAAATGTGAGGAAAATT+GGG | 0.386839 | 5.1:+76831106 | None:intergenic |
| AAGACCTGTGTTATTCTGTT+GGG | 0.387128 | 5.1:-76829595 | MS.gene37984:CDS |
| GGGTTGTTGGATTCACTGTT+GGG | 0.388784 | 5.1:-76832019 | MS.gene37984:CDS |
| ATTTACAGCAGCAAGGAAAC+TGG | 0.392992 | 5.1:-76830062 | MS.gene37984:CDS |
| TGTTACTCCAACAATTGTTC+TGG | 0.395251 | 5.1:-76830391 | MS.gene37984:CDS |
| ATATCTTTGTTGTTGGCGCT+TGG | 0.395651 | 5.1:+76831338 | None:intergenic |
| TTCAACTTCATGGTTGCTGT+TGG | 0.397088 | 5.1:-76831291 | MS.gene37984:CDS |
| TCAACTTCATGGTTGCTGTT+GGG | 0.398882 | 5.1:-76831290 | MS.gene37984:CDS |
| CTGTTATTCGACTCAGATCC+GGG | 0.403312 | 5.1:-76829565 | MS.gene37984:CDS |
| GCTTGGCTCCTTCCGAGGTT+CGG | 0.411178 | 5.1:+76831355 | None:intergenic |
| CCTAGAAAGAAAACTGTGAT+AGG | 0.412694 | 5.1:+76829926 | None:intergenic |
| GGGGTTGTTGGATTCACTGT+TGG | 0.413369 | 5.1:-76832020 | MS.gene37984:CDS |
| ACACCAGCCTCAAGTATAAC+AGG | 0.419149 | 5.1:-76830945 | MS.gene37984:intron |
| TAACAGCAATCTTAGCCATT+TGG | 0.422409 | 5.1:+76830409 | None:intergenic |
| AACTCTGCCAGAACAATTGT+TGG | 0.424008 | 5.1:+76830384 | None:intergenic |
| CTTACAGTGGTCAGGTGCCT+TGG | 0.424187 | 5.1:-76829804 | MS.gene37984:CDS |
| GGAGCGGTTGTTGCTCTCAC+TGG | 0.441079 | 5.1:-76829526 | MS.gene37984:CDS |
| TCAGACAACAATGTTATTGT+TGG | 0.442813 | 5.1:+76829369 | None:intergenic |
| TCTTTGTTGTCTTCACTAGC+TGG | 0.443142 | 5.1:+76829409 | None:intergenic |
| CAGTGTTGGTTTCTACCAAA+TGG | 0.447856 | 5.1:-76830424 | MS.gene37984:CDS |
| GCTTTGGCTGCTGTATCAGC+TGG | 0.447867 | 5.1:-76830189 | MS.gene37984:CDS |
| TTCTCTTCTATATTTGCACT+TGG | 0.450424 | 5.1:-76831000 | MS.gene37984:CDS |
| CCGGGGATTGTGAGCATTGG+TGG | 0.458301 | 5.1:-76829547 | MS.gene37984:CDS |
| GCAAGGAAACTGGACAGCTT+TGG | 0.461956 | 5.1:-76830052 | MS.gene37984:CDS |
| TCTGTTATTCGACTCAGATC+CGG | 0.468414 | 5.1:-76829566 | MS.gene37984:CDS |
| TAAGACCTGTGTTATTCTGT+TGG | 0.483155 | 5.1:-76829596 | MS.gene37984:CDS |
| TGTTGCTCTCACTGGAATGT+CGG | 0.489922 | 5.1:-76829518 | MS.gene37984:CDS |
| AAAAGAAAAGACAGTGATGC+AGG | 0.490754 | 5.1:-76831977 | MS.gene37984:CDS |
| CACTTGAATGATAGGACTCC+TGG | 0.491316 | 5.1:+76829878 | None:intergenic |
| TTGGATTCACTGTTGGGAGA+TGG | 0.510806 | 5.1:-76832013 | MS.gene37984:CDS |
| CCACCAATGCTCACAATCCC+CGG | 0.514520 | 5.1:+76829547 | None:intergenic |
| AGTGCAAATATAGAAGAGAA+TGG | 0.515498 | 5.1:+76831003 | None:intergenic |
| AACAGCAACCATGAAGTTGA+AGG | 0.516911 | 5.1:+76831293 | None:intergenic |
| GTAGAAGGCAAACTATGCTT+CGG | 0.518405 | 5.1:+76829442 | None:intergenic |
| TTGGCGCTTGGCTCCTTCCG+AGG | 0.534697 | 5.1:+76831350 | None:intergenic |
| GATCCGGGGATTGTGAGCAT+TGG | 0.543162 | 5.1:-76829550 | MS.gene37984:CDS |
| AAAATTATCAGGTAAAGCAC+TGG | 0.545102 | 5.1:-76831409 | MS.gene37984:intron |
| CTTTATTGTTGATAGGTGAT+GGG | 0.545367 | 5.1:-76831147 | MS.gene37984:intron |
| TGATAGGTGATGGGAAGAGT+TGG | 0.547749 | 5.1:-76831138 | MS.gene37984:intron |
| TTTCTCATTGTAGATTGATG+TGG | 0.552469 | 5.1:-76829958 | MS.gene37984:intron |
| ACCTGTGTTATTCTGTTGGG+AGG | 0.560653 | 5.1:-76829592 | MS.gene37984:CDS |
| AATGAGCTCCGAACCTCGGA+AGG | 0.566484 | 5.1:-76831363 | MS.gene37984:CDS |
| TTGTTCACTACATCACTGCA+TGG | 0.573296 | 5.1:-76831089 | MS.gene37984:CDS |
| GATTGTGAGCATTGGTGGAG+CGG | 0.576911 | 5.1:-76829542 | MS.gene37984:CDS |
| TGGTCTAATTTACAGCAGCA+AGG | 0.584781 | 5.1:-76830069 | MS.gene37984:CDS |
| TTGAAGGATAATGCGACCAC+TGG | 0.591814 | 5.1:+76831309 | None:intergenic |
| CTACAATGAGCTCCGAACCT+CGG | 0.592720 | 5.1:-76831367 | MS.gene37984:CDS |
| CGCCAACAACAAAGATATTG+CGG | 0.594240 | 5.1:-76831333 | MS.gene37984:CDS |
| CAGGAGTCCTATCATTCAAG+TGG | 0.594492 | 5.1:-76829877 | MS.gene37984:CDS |
| ATGCCTTGGATTGATCCACC+AGG | 0.606051 | 5.1:-76829896 | MS.gene37984:CDS |
| GGACCTGTTATACTTGAGGC+TGG | 0.619909 | 5.1:+76830942 | None:intergenic |
| ACATGGACCTGTTATACTTG+AGG | 0.625521 | 5.1:+76830938 | None:intergenic |
| AAAGTGCCTTGAAAATTGCA+AGG | 0.638843 | 5.1:+76831061 | None:intergenic |
| ACTCCTGGTGGATCAATCCA+AGG | 0.644949 | 5.1:+76829893 | None:intergenic |
| GTAGTCTTACCCTAATGCCA+AGG | 0.645323 | 5.1:+76829787 | None:intergenic |
| TGTAGCAGTTGCAACTGTGT+CGG | 0.648797 | 5.1:-76830166 | MS.gene37984:CDS |
| GCCTCCCAACAGAATAACAC+AGG | 0.658463 | 5.1:+76829591 | None:intergenic |
| AGGAGTCCTATCATTCAAGT+GGG | 0.665530 | 5.1:-76829876 | MS.gene37984:CDS |
| GGTTGCTGTTGGGATCATCA+TGG | 0.682153 | 5.1:-76831280 | MS.gene37984:CDS |
| TGTTATTCGACTCAGATCCG+GGG | 0.684228 | 5.1:-76829564 | MS.gene37984:CDS |
| ACAAAGATATTGCGGACCAG+TGG | 0.685300 | 5.1:-76831325 | MS.gene37984:CDS |
| TTGAATGATAGGACTCCTGG+TGG | 0.704189 | 5.1:+76829881 | None:intergenic |
| TGATGTAGTGAACAAATGTG+AGG | 0.721156 | 5.1:+76831097 | None:intergenic |
| ACCACTGTAAGAGAAAACCG+AGG | 0.773883 | 5.1:+76829816 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGAAATATTCTTTAG+AGG | + | chr5.1:76829802-76829821 | None:intergenic | 15.0% |
| !!! | AGACCATAAAATTTTATTTA+TGG | + | chr5.1:76831308-76831327 | None:intergenic | 15.0% |
| !!! | TAATTTTACAAAAGAGAAAT+TGG | + | chr5.1:76831387-76831406 | None:intergenic | 15.0% |
| !!! | TTTTCTGTTTTTTCAAATTT+TGG | - | chr5.1:76829681-76829700 | MS.gene37984:intron | 15.0% |
| !! | AAAAACCATTTCTTCAAAAA+AGG | - | chr5.1:76831042-76831061 | MS.gene37984:CDS | 20.0% |
| !! | AAATATAAACCAATGAAAGT+AGG | + | chr5.1:76829874-76829893 | None:intergenic | 20.0% |
| !! | AATATAAACCAATGAAAGTA+GGG | + | chr5.1:76829873-76829892 | None:intergenic | 20.0% |
| !! | ATATTATTATCAATCAATGC+AGG | - | chr5.1:76831734-76831753 | MS.gene37984:intron | 20.0% |
| !! | ATGATTCAATTAATCTTTAG+AGG | + | chr5.1:76829901-76829920 | None:intergenic | 20.0% |
| !! | ATGTTTCAAATTTGAAAATG+TGG | - | chr5.1:76830610-76830629 | MS.gene37984:intron | 20.0% |
| !! | GATATAACTTTATTGTTGAT+AGG | - | chr5.1:76830237-76830256 | MS.gene37984:intron | 20.0% |
| !! | GTATAATTTATTTCCTTGAA+TGG | - | chr5.1:76830750-76830769 | MS.gene37984:intron | 20.0% |
| !! | GTGCATAAAAAATAATTGTA+TGG | + | chr5.1:76831142-76831161 | None:intergenic | 20.0% |
| !! | TATAAACCATTTCAAACATA+TGG | - | chr5.1:76831104-76831123 | MS.gene37984:CDS | 20.0% |
| !! | TATTATTATCAATCAATGCA+GGG | - | chr5.1:76831735-76831754 | MS.gene37984:intron | 20.0% |
| !! | TTAAAAGTCAATGACTAATT+TGG | + | chr5.1:76830537-76830556 | None:intergenic | 20.0% |
| !! | TTGGTATGAAAAATAAACAA+AGG | + | chr5.1:76830518-76830537 | None:intergenic | 20.0% |
| !!! | AAAATTTTATTTATGGCACT+TGG | + | chr5.1:76831301-76831320 | None:intergenic | 20.0% |
| !!! | ATACTTAATCTTTTATTGCT+TGG | + | chr5.1:76829776-76829795 | None:intergenic | 20.0% |
| !!! | GATTTAGAGTTCAATTTATT+TGG | - | chr5.1:76831247-76831266 | MS.gene37984:intron | 20.0% |
| !!! | GTGCCATAAATAAAATTTTA+TGG | - | chr5.1:76831302-76831321 | MS.gene37984:CDS | 20.0% |
| !!! | TATTTGTTATGCTAAGAATA+AGG | - | chr5.1:76829708-76829727 | MS.gene37984:intron | 20.0% |
| ! | AAACATAATGACTGAACATT+AGG | + | chr5.1:76830596-76830615 | None:intergenic | 25.0% |
| ! | AAATATCAGCAGTTTGAAAA+GGG | - | chr5.1:76829636-76829655 | MS.gene37984:CDS | 25.0% |
| ! | AATGATGCTGATAATAGATA+GGG | - | chr5.1:76829923-76829942 | MS.gene37984:CDS | 25.0% |
| ! | ATAAGGTATACATCTGAATT+TGG | - | chr5.1:76829725-76829744 | MS.gene37984:intron | 25.0% |
| ! | ATATAAACCAATGAAAGTAG+GGG | + | chr5.1:76829872-76829891 | None:intergenic | 25.0% |
| ! | ATGTTATCATGATGAATAGA+AGG | - | chr5.1:76830728-76830747 | MS.gene37984:intron | 25.0% |
| ! | ATTAGGACAGTAATGAAAAT+TGG | + | chr5.1:76830579-76830598 | None:intergenic | 25.0% |
| ! | CATAGATGAAAAATTAAGTC+TGG | - | chr5.1:76830797-76830816 | MS.gene37984:intron | 25.0% |
| ! | CATTTGTGTTCAATTCTTAA+TGG | - | chr5.1:76829574-76829593 | MS.gene37984:CDS | 25.0% |
| ! | GCACTAATTAATCATGTAAT+TGG | - | chr5.1:76831158-76831177 | MS.gene37984:intron | 25.0% |
| ! | TAAATATCAGCAGTTTGAAA+AGG | - | chr5.1:76829635-76829654 | MS.gene37984:CDS | 25.0% |
| ! | TAAGGTATACATCTGAATTT+GGG | - | chr5.1:76829726-76829745 | MS.gene37984:intron | 25.0% |
| ! | TAATGATGCTGATAATAGAT+AGG | - | chr5.1:76829922-76829941 | MS.gene37984:CDS | 25.0% |
| ! | TCATCATGGTTAAAATTATC+AGG | - | chr5.1:76829971-76829990 | MS.gene37984:intron | 25.0% |
| !! | TCTTTTCCATATGTTTGAAA+TGG | + | chr5.1:76831113-76831132 | None:intergenic | 25.0% |
| !! | TTTTCAAACTGCTGATATTT+AGG | + | chr5.1:76829636-76829655 | None:intergenic | 25.0% |
| !!! | TGTCAACATGGATTTAATTT+TGG | + | chr5.1:76830682-76830701 | None:intergenic | 25.0% |
| !!! | TGTTGTGTTTTGTTTAAGTA+AGG | - | chr5.1:76831696-76831715 | MS.gene37984:intron | 25.0% |
| !!! | TTTGACCTTTTTTGAAGAAA+TGG | + | chr5.1:76831050-76831069 | None:intergenic | 25.0% |
| AAAATTATCAGGTAAAGCAC+TGG | - | chr5.1:76829982-76830001 | MS.gene37984:intron | 30.0% | |
| AAATCTTACTTGACCATTCA+AGG | + | chr5.1:76830766-76830785 | None:intergenic | 30.0% | |
| AACATACATGCAATATGAGA+AGG | + | chr5.1:76830161-76830180 | None:intergenic | 30.0% | |
| AACATGTTAGAGCAAAAACA+TGG | + | chr5.1:76830473-76830492 | None:intergenic | 30.0% | |
| AACCTAATTGAAACTTAAGC+TGG | - | chr5.1:76830888-76830907 | MS.gene37984:intron | 30.0% | |
| AGTAGAATTCTGTGTCAAAA+AGG | + | chr5.1:76831668-76831687 | None:intergenic | 30.0% | |
| AGTGCAAATATAGAAGAGAA+TGG | + | chr5.1:76830391-76830410 | None:intergenic | 30.0% | |
| GAACAAATGTGAGGAAAATT+GGG | + | chr5.1:76830288-76830307 | None:intergenic | 30.0% | |
| GTAGAATTCTGTGTCAAAAA+GGG | + | chr5.1:76831667-76831686 | None:intergenic | 30.0% | |
| GTGCTATAGTTGCAATTATA+TGG | - | chr5.1:76831269-76831288 | MS.gene37984:CDS | 30.0% | |
| TCAGACAACAATGTTATTGT+TGG | + | chr5.1:76832025-76832044 | None:intergenic | 30.0% | |
| TGAACAAATGTGAGGAAAAT+TGG | + | chr5.1:76830289-76830308 | None:intergenic | 30.0% | |
| TTCTCTTCTATATTTGCACT+TGG | - | chr5.1:76830391-76830410 | MS.gene37984:CDS | 30.0% | |
| TTTCTCATTGTAGATTGATG+TGG | - | chr5.1:76831433-76831452 | MS.gene37984:intron | 30.0% | |
| TTTGCTCTAACATGTTTATC+AGG | - | chr5.1:76830477-76830496 | MS.gene37984:intron | 30.0% | |
| ! | ACTTTATTGTTGATAGGTGA+TGG | - | chr5.1:76830243-76830262 | MS.gene37984:intron | 30.0% |
| ! | CTTTATTGTTGATAGGTGAT+GGG | - | chr5.1:76830244-76830263 | MS.gene37984:intron | 30.0% |
| ! | GAATGGTCAAGTAAGATTTT+TGG | - | chr5.1:76830767-76830786 | MS.gene37984:intron | 30.0% |
| AAAAGAAAAGACAGTGATGC+AGG | - | chr5.1:76829414-76829433 | MS.gene37984:CDS | 35.0% | |
| AATAGAGAGTCAGGAATACA+TGG | + | chr5.1:76829539-76829558 | None:intergenic | 35.0% | |
| CACCAGCTTAAGTTTCAATT+AGG | + | chr5.1:76830893-76830912 | None:intergenic | 35.0% | |
| CCTAGAAAGAAAACTGTGAT+AGG | + | chr5.1:76831468-76831487 | None:intergenic | 35.0% | |
| GATCATCATGGCAAACAAAT+TGG | - | chr5.1:76830123-76830142 | MS.gene37984:CDS | 35.0% | |
| TAACAGCAATCTTAGCCATT+TGG | + | chr5.1:76830985-76831004 | None:intergenic | 35.0% | |
| TAATTGGAATGCAATGATCC+AGG | - | chr5.1:76831174-76831193 | MS.gene37984:intron | 35.0% | |
| TCCTGACTCTCTATTATGAT+TGG | - | chr5.1:76829544-76829563 | MS.gene37984:CDS | 35.0% | |
| TGATGTAGTGAACAAATGTG+AGG | + | chr5.1:76830297-76830316 | None:intergenic | 35.0% | |
| TGTTACTCCAACAATTGTTC+TGG | - | chr5.1:76831000-76831019 | MS.gene37984:CDS | 35.0% | |
| TTACATCCCACTTGAATGAT+AGG | + | chr5.1:76831524-76831543 | None:intergenic | 35.0% | |
| ! | AAAGTGCCTTGAAAATTGCA+AGG | + | chr5.1:76830333-76830352 | None:intergenic | 35.0% |
| ! | AAGACCTGTGTTATTCTGTT+GGG | - | chr5.1:76831796-76831815 | MS.gene37984:intron | 35.0% |
| ! | CCTATCACAGTTTTCTTTCT+AGG | - | chr5.1:76831465-76831484 | MS.gene37984:intron | 35.0% |
| ! | GATTCTCCTTGCAATTTTCA+AGG | - | chr5.1:76830324-76830343 | MS.gene37984:intron | 35.0% |
| ! | TAAGACCTGTGTTATTCTGT+TGG | - | chr5.1:76831795-76831814 | MS.gene37984:intron | 35.0% |
| !! | ATTTTGATATCTGCTCTCCT+CGG | - | chr5.1:76831558-76831577 | MS.gene37984:intron | 35.0% |
| !! | TGACTTTGTTGTTGTCAACA+TGG | + | chr5.1:76830694-76830713 | None:intergenic | 35.0% |
| !! | TGCAATTTTCAAGGCACTTT+CGG | - | chr5.1:76830333-76830352 | MS.gene37984:intron | 35.0% |
| !! | TGGTGAAGTTTTGTCTAGTT+TGG | - | chr5.1:76830908-76830927 | MS.gene37984:intron | 35.0% |
| !!! | AATGGAGTTGTTTTAGATGG+AGG | + | chr5.1:76830373-76830392 | None:intergenic | 35.0% |
| !!! | CTTTTTTCCCCTACTTTCAT+TGG | - | chr5.1:76829862-76829881 | MS.gene37984:CDS | 35.0% |
| !!! | GAGAATGGAGTTGTTTTAGA+TGG | + | chr5.1:76830376-76830395 | None:intergenic | 35.0% |
| !!! | GCTACAACTCATGTTGTTTT+AGG | - | chr5.1:76831766-76831785 | MS.gene37984:intron | 35.0% |
| AACAGCAACCATGAAGTTGA+AGG | + | chr5.1:76830101-76830120 | None:intergenic | 40.0% | |
| AACTCTGCCAGAACAATTGT+TGG | + | chr5.1:76831010-76831029 | None:intergenic | 40.0% | |
| ACATGGACCTGTTATACTTG+AGG | + | chr5.1:76830456-76830475 | None:intergenic | 40.0% | |
| AGGAGTCCTATCATTCAAGT+GGG | - | chr5.1:76831515-76831534 | MS.gene37984:intron | 40.0% | |
| ATTTACAGCAGCAAGGAAAC+TGG | - | chr5.1:76831329-76831348 | MS.gene37984:CDS | 40.0% | |
| CGCATTATCCTTCAACTTCA+TGG | - | chr5.1:76830090-76830109 | MS.gene37984:CDS | 40.0% | |
| CGCCAACAACAAAGATATTG+CGG | - | chr5.1:76830058-76830077 | MS.gene37984:CDS | 40.0% | |
| CTAATGCAGTGTTCTCATCA+TGG | - | chr5.1:76829957-76829976 | MS.gene37984:intron | 40.0% | |
| GAACTGAACTGTCAGCAAAA+AGG | + | chr5.1:76830944-76830963 | None:intergenic | 40.0% | |
| GAACTGTCAGCAAAAAGGAA+AGG | + | chr5.1:76830939-76830958 | None:intergenic | 40.0% | |
| GCCAATCATAATAGAGAGTC+AGG | + | chr5.1:76829548-76829567 | None:intergenic | 40.0% | |
| GTAGAAGGCAAACTATGCTT+CGG | + | chr5.1:76831952-76831971 | None:intergenic | 40.0% | |
| TCTGTTATTCGACTCAGATC+CGG | - | chr5.1:76831825-76831844 | MS.gene37984:intron | 40.0% | |
| TGGTCTAATTTACAGCAGCA+AGG | - | chr5.1:76831322-76831341 | MS.gene37984:CDS | 40.0% | |
| TTCAACTTCATGGTTGCTGT+TGG | - | chr5.1:76830100-76830119 | MS.gene37984:CDS | 40.0% | |
| TTGTTCACTACATCACTGCA+TGG | - | chr5.1:76830302-76830321 | MS.gene37984:intron | 40.0% | |
| ! | GAATGCAATGATCCAGGTTT+TGG | - | chr5.1:76831180-76831199 | MS.gene37984:intron | 40.0% |
| ! | GTCCGCAATATCTTTGTTGT+TGG | + | chr5.1:76830063-76830082 | None:intergenic | 40.0% |
| ! | TCAACTTCATGGTTGCTGTT+GGG | - | chr5.1:76830101-76830120 | MS.gene37984:CDS | 40.0% |
| ! | TCTTTGTTGTCTTCACTAGC+TGG | + | chr5.1:76831985-76832004 | None:intergenic | 40.0% |
| !! | ATATCTTTGTTGTTGGCGCT+TGG | + | chr5.1:76830056-76830075 | None:intergenic | 40.0% |
| !! | ATTTGCACTTGGTGCTGTTA+TGG | - | chr5.1:76830402-76830421 | MS.gene37984:CDS | 40.0% |
| !! | CAGTGTTGGTTTCTACCAAA+TGG | - | chr5.1:76830967-76830986 | MS.gene37984:CDS | 40.0% |
| !!! | AATGATCCAGGTTTTGGCTT+TGG | - | chr5.1:76831186-76831205 | MS.gene37984:intron | 40.0% |
| ACAAAGATATTGCGGACCAG+TGG | - | chr5.1:76830066-76830085 | MS.gene37984:CDS | 45.0% | |
| ACACCAGCCTCAAGTATAAC+AGG | - | chr5.1:76830446-76830465 | MS.gene37984:intron | 45.0% | |
| ACCACTGTAAGAGAAAACCG+AGG | + | chr5.1:76831578-76831597 | None:intergenic | 45.0% | |
| AGTCAGGAATACATGGAAGG+AGG | + | chr5.1:76829532-76829551 | None:intergenic | 45.0% | |
| CACTTGAATGATAGGACTCC+TGG | + | chr5.1:76831516-76831535 | None:intergenic | 45.0% | |
| CAGGAGTCCTATCATTCAAG+TGG | - | chr5.1:76831514-76831533 | MS.gene37984:intron | 45.0% | |
| CAGTTCAGTTCATGCAGTGT+TGG | - | chr5.1:76830953-76830972 | MS.gene37984:CDS | 45.0% | |
| CTGTTATTCGACTCAGATCC+GGG | - | chr5.1:76831826-76831845 | MS.gene37984:intron | 45.0% | |
| GAGAGTCAGGAATACATGGA+AGG | + | chr5.1:76829535-76829554 | None:intergenic | 45.0% | |
| GGGTTGTTGGATTCACTGTT+GGG | - | chr5.1:76829372-76829391 | MS.gene37984:CDS | 45.0% | |
| TGTAGCAGTTGCAACTGTGT+CGG | - | chr5.1:76831225-76831244 | MS.gene37984:intron | 45.0% | |
| TGTTATTCGACTCAGATCCG+GGG | - | chr5.1:76831827-76831846 | MS.gene37984:intron | 45.0% | |
| TGTTGCTCTCACTGGAATGT+CGG | - | chr5.1:76831873-76831892 | MS.gene37984:intron | 45.0% | |
| TTGAAGGATAATGCGACCAC+TGG | + | chr5.1:76830085-76830104 | None:intergenic | 45.0% | |
| TTGAATGATAGGACTCCTGG+TGG | + | chr5.1:76831513-76831532 | None:intergenic | 45.0% | |
| TTGGATTCACTGTTGGGAGA+TGG | - | chr5.1:76829378-76829397 | MS.gene37984:CDS | 45.0% | |
| ! | ACCTGTGTTATTCTGTTGGG+AGG | - | chr5.1:76831799-76831818 | MS.gene37984:intron | 45.0% |
| ! | GCTGTTATGGCTTTTGCATC+TGG | - | chr5.1:76830415-76830434 | MS.gene37984:CDS | 45.0% |
| ! | GGTTTTCTCTTACAGTGGTC+AGG | - | chr5.1:76831579-76831598 | MS.gene37984:intron | 45.0% |
| ! | GTAGTCTTACCCTAATGCCA+AGG | + | chr5.1:76831607-76831626 | None:intergenic | 45.0% |
| ! | TCCTCGGTTTTCTCTTACAG+TGG | - | chr5.1:76831574-76831593 | MS.gene37984:intron | 45.0% |
| ! | TTCTAGGAGCTTTGATGCCT+TGG | - | chr5.1:76831481-76831500 | MS.gene37984:intron | 45.0% |
| !! | GTTTTAGATGGAGGAGACAC+AGG | + | chr5.1:76830364-76830383 | None:intergenic | 45.0% |
| !! | TGATAGGTGATGGGAAGAGT+TGG | - | chr5.1:76830253-76830272 | MS.gene37984:intron | 45.0% |
| !!! | GCTGGTTTTTGCTGTGTAGA+AGG | + | chr5.1:76831967-76831986 | None:intergenic | 45.0% |
| !!! | TTTGATTTATATAAAAAAAT+TGG | - | chr5.1:76829500-76829519 | MS.gene37984:CDS | 5.0% |
| ATGCCTTGGATTGATCCACC+AGG | - | chr5.1:76831495-76831514 | MS.gene37984:intron | 50.0% | |
| CTACAATGAGCTCCGAACCT+CGG | - | chr5.1:76830024-76830043 | MS.gene37984:intron | 50.0% | |
| GACAGTGATGCAGGAGAAAC+AGG | - | chr5.1:76829423-76829442 | MS.gene37984:CDS | 50.0% | |
| GCAAGGAAACTGGACAGCTT+TGG | - | chr5.1:76831339-76831358 | MS.gene37984:CDS | 50.0% | |
| GCCTCCCAACAGAATAACAC+AGG | + | chr5.1:76831803-76831822 | None:intergenic | 50.0% | |
| GGACCTGTTATACTTGAGGC+TGG | + | chr5.1:76830452-76830471 | None:intergenic | 50.0% | |
| GGGGTTGTTGGATTCACTGT+TGG | - | chr5.1:76829371-76829390 | MS.gene37984:CDS | 50.0% | |
| ! | ACTCCTGGTGGATCAATCCA+AGG | + | chr5.1:76831501-76831520 | None:intergenic | 50.0% |
| ! | GGTTGCTGTTGGGATCATCA+TGG | - | chr5.1:76830111-76830130 | MS.gene37984:CDS | 50.0% |
| !! | GATTGTGAGCATTGGTGGAG+CGG | - | chr5.1:76831849-76831868 | MS.gene37984:intron | 50.0% |
| AATGAGCTCCGAACCTCGGA+AGG | - | chr5.1:76830028-76830047 | MS.gene37984:intron | 55.0% | |
| CAGCAGCCAAAGCCAAAACC+TGG | + | chr5.1:76831195-76831214 | None:intergenic | 55.0% | |
| CCACCAATGCTCACAATCCC+CGG | + | chr5.1:76831847-76831866 | None:intergenic | 55.0% | |
| CTTACAGTGGTCAGGTGCCT+TGG | - | chr5.1:76831587-76831606 | MS.gene37984:intron | 55.0% | |
| GATCCGGGGATTGTGAGCAT+TGG | - | chr5.1:76831841-76831860 | MS.gene37984:intron | 55.0% | |
| GCTTTGGCTGCTGTATCAGC+TGG | - | chr5.1:76831202-76831221 | MS.gene37984:intron | 55.0% | |
| GGTCAGGTGCCTTGGCATTA+GGG | - | chr5.1:76831595-76831614 | MS.gene37984:intron | 55.0% | |
| TGGTCAGGTGCCTTGGCATT+AGG | - | chr5.1:76831594-76831613 | MS.gene37984:intron | 55.0% | |
| GCTTGGCTCCTTCCGAGGTT+CGG | + | chr5.1:76830039-76830058 | None:intergenic | 60.0% | |
| GGAGCGGTTGTTGCTCTCAC+TGG | - | chr5.1:76831865-76831884 | MS.gene37984:intron | 60.0% | |
| !! | CCGGGGATTGTGAGCATTGG+TGG | - | chr5.1:76831844-76831863 | MS.gene37984:intron | 60.0% |
| TTGGCGCTTGGCTCCTTCCG+AGG | + | chr5.1:76830044-76830063 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 76829369 | 76832044 | 76829369 | ID=MS.gene37984 |
| chr5.1 | mRNA | 76829369 | 76832044 | 76829369 | ID=MS.gene37984.t1;Parent=MS.gene37984 |
| chr5.1 | exon | 76831969 | 76832044 | 76831969 | ID=MS.gene37984.t1.exon1;Parent=MS.gene37984.t1 |
| chr5.1 | CDS | 76831969 | 76832044 | 76831969 | ID=cds.MS.gene37984.t1;Parent=MS.gene37984.t1 |
| chr5.1 | exon | 76831269 | 76831420 | 76831269 | ID=MS.gene37984.t1.exon2;Parent=MS.gene37984.t1 |
| chr5.1 | CDS | 76831269 | 76831420 | 76831269 | ID=cds.MS.gene37984.t1;Parent=MS.gene37984.t1 |
| chr5.1 | exon | 76830946 | 76831154 | 76830946 | ID=MS.gene37984.t1.exon3;Parent=MS.gene37984.t1 |
| chr5.1 | CDS | 76830946 | 76831154 | 76830946 | ID=cds.MS.gene37984.t1;Parent=MS.gene37984.t1 |
| chr5.1 | exon | 76830350 | 76830443 | 76830350 | ID=MS.gene37984.t1.exon4;Parent=MS.gene37984.t1 |
| chr5.1 | CDS | 76830350 | 76830443 | 76830350 | ID=cds.MS.gene37984.t1;Parent=MS.gene37984.t1 |
| chr5.1 | exon | 76830051 | 76830217 | 76830051 | ID=MS.gene37984.t1.exon5;Parent=MS.gene37984.t1 |
| chr5.1 | CDS | 76830051 | 76830217 | 76830051 | ID=cds.MS.gene37984.t1;Parent=MS.gene37984.t1 |
| chr5.1 | exon | 76829797 | 76829967 | 76829797 | ID=MS.gene37984.t1.exon6;Parent=MS.gene37984.t1 |
| chr5.1 | CDS | 76829797 | 76829967 | 76829797 | ID=cds.MS.gene37984.t1;Parent=MS.gene37984.t1 |
| chr5.1 | exon | 76829369 | 76829657 | 76829369 | ID=MS.gene37984.t1.exon7;Parent=MS.gene37984.t1 |
| chr5.1 | CDS | 76829369 | 76829657 | 76829369 | ID=cds.MS.gene37984.t1;Parent=MS.gene37984.t1 |
| Gene Sequence |
| Protein sequence |
