Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38217.t1 | XP_003617946.1 | 99.1 | 1308 | 12 | 0 | 1 | 1308 | 1 | 1308 | 0.00E+00 | 2583.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38217.t1 | F4IGA5 | 56.1 | 1330 | 517 | 16 | 1 | 1308 | 1 | 1285 | 0.0e+00 | 1381.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38217.t1 | G7KEN0 | 99.1 | 1308 | 12 | 0 | 1 | 1308 | 1 | 1308 | 0.0e+00 | 2583.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene38217 | 0.806454 | 8.16E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38217.t1 | MTR_5g097260 | 99.083 | 1308 | 12 | 0 | 1 | 1308 | 1 | 1308 | 0.0 | 2693 |
| MS.gene38217.t1 | MTR_5g097260 | 99.194 | 992 | 8 | 0 | 1 | 992 | 1 | 992 | 0.0 | 2052 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38217.t1 | AT2G05120 | 53.748 | 1334 | 477 | 18 | 1 | 1308 | 1 | 1220 | 0.0 | 1333 |
| MS.gene38217.t1 | AT2G05120 | 60.953 | 986 | 368 | 8 | 329 | 1308 | 1 | 975 | 0.0 | 1199 |
Find 303 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGCCTTGCAAATTATTT+TGG | 0.154538 | 5.3:+78565690 | MS.gene38217:CDS |
| TCATCTTCAACTCTAGCTTT+TGG | 0.192580 | 5.3:-78564028 | None:intergenic |
| CAAGAGTCACAGAAAACTTT+TGG | 0.217371 | 5.3:+78569559 | MS.gene38217:CDS |
| GTCAAAGCATGTTCTAATTA+TGG | 0.251677 | 5.3:-78566049 | None:intergenic |
| ATAAGAATGAGAACCATTTA+TGG | 0.257036 | 5.3:+78566073 | MS.gene38217:CDS |
| GCTTCAGAGCTAGCCCTTCT+TGG | 0.257823 | 5.3:-78564418 | None:intergenic |
| GAGTACAAATGAGAGGATTT+TGG | 0.262940 | 5.3:+78563976 | MS.gene38217:CDS |
| AATTGTGATAGCTCCTCTTT+TGG | 0.264898 | 5.3:+78563197 | MS.gene38217:CDS |
| CAACACCAGTTGAGCGGTTC+TGG | 0.274945 | 5.3:-78565771 | None:intergenic |
| GTGCCGGTGGGAGGACGGTT+AGG | 0.279164 | 5.3:-78561044 | None:intergenic |
| GTATGAATGTTTCAAGGCTT+TGG | 0.291904 | 5.3:+78563741 | MS.gene38217:CDS |
| TTTGAAGATTCTTAAATTGC+AGG | 0.295068 | 5.3:+78568260 | MS.gene38217:CDS |
| AGCTCTGAAGCATGGGGTTC+TGG | 0.295463 | 5.3:+78564430 | MS.gene38217:CDS |
| AAACATGGAGACTTCAACTT+TGG | 0.296898 | 5.3:+78569781 | MS.gene38217:CDS |
| TGGATGCTCCTTCACGAAAA+AGG | 0.302380 | 5.3:-78567432 | None:intergenic |
| CACAATTTAATCAAGTCTTC+TGG | 0.302486 | 5.3:-78569464 | None:intergenic |
| CTGTTGTCCGGAAGGGAATA+TGG | 0.302757 | 5.3:+78566136 | MS.gene38217:CDS |
| AGAATTTGAAGCTACCTATA+AGG | 0.305229 | 5.3:+78566386 | MS.gene38217:CDS |
| AGGAGCATCCAGATCTTCTT+TGG | 0.306981 | 5.3:+78567444 | MS.gene38217:CDS |
| TAACAGAGAAAGCAGGAATA+TGG | 0.307360 | 5.3:+78564263 | MS.gene38217:CDS |
| GTGATTGCTTCTGCAGTTCC+CGG | 0.312528 | 5.3:+78563443 | MS.gene38217:CDS |
| CCTCTCAAAGGCGGTGATTT+GGG | 0.312712 | 5.3:+78563581 | MS.gene38217:CDS |
| TTCTTCAAAAGTTTGACTTT+GGG | 0.313144 | 5.3:-78569726 | None:intergenic |
| CCCTCTCAAAGGCGGTGATT+TGG | 0.314354 | 5.3:+78563580 | MS.gene38217:CDS |
| GATTCCTTACTAGAATGATA+TGG | 0.321649 | 5.3:-78563653 | None:intergenic |
| TCTAAGATTGCAGCCTTTGC+AGG | 0.325094 | 5.3:+78567623 | MS.gene38217:CDS |
| CCAACTACCAGTATCGTAAT+TGG | 0.325316 | 5.3:-78563159 | None:intergenic |
| TTTGGGATTATAACTTCAAT+AGG | 0.325655 | 5.3:-78564010 | None:intergenic |
| GTGTAGCGTTTCTATGATAA+TGG | 0.328473 | 5.3:-78564141 | None:intergenic |
| TGTTTCAAGGCTTTGGTCTC+AGG | 0.336011 | 5.3:+78563748 | MS.gene38217:CDS |
| AAATTGAATAATAACCTTAT+AGG | 0.337834 | 5.3:-78566400 | None:intergenic |
| CTTCTTCAAAAGTTTGACTT+TGG | 0.338124 | 5.3:-78569727 | None:intergenic |
| AAGGTCTATTAAATGAATAT+TGG | 0.343308 | 5.3:+78566319 | MS.gene38217:CDS |
| TGTTCATCACAAACAACTTT+CGG | 0.346636 | 5.3:-78561266 | None:intergenic |
| CTTGAAAAGCTAGAAACTTC+TGG | 0.347194 | 5.3:+78564574 | MS.gene38217:CDS |
| TGCCATTAGCATCAGCTTGC+CGG | 0.347487 | 5.3:-78569861 | None:intergenic |
| TTGACCATGCAATATAAATC+AGG | 0.350558 | 5.3:+78563941 | MS.gene38217:CDS |
| GTGCTACTTGAGGCATATTC+TGG | 0.353169 | 5.3:+78566258 | MS.gene38217:CDS |
| GTTCGCAAGCCCTCTGGATC+TGG | 0.359933 | 5.3:-78566008 | None:intergenic |
| CATGAGAGTTCGGGATCTAC+TGG | 0.360042 | 5.3:+78567317 | MS.gene38217:CDS |
| TTTCCATGAGGCTTCGAATA+GGG | 0.361995 | 5.3:+78564062 | MS.gene38217:CDS |
| TTGTGTGCAGCATGAGAGTT+CGG | 0.362428 | 5.3:+78567307 | MS.gene38217:intron |
| AGCATCAGCTTGCCGGCAAC+TGG | 0.364080 | 5.3:-78569854 | None:intergenic |
| TTCAGAGTCGAGTTTAGTTC+TGG | 0.364127 | 5.3:+78563719 | MS.gene38217:CDS |
| AACAATTCTCTGAGTTGTTA+AGG | 0.369937 | 5.3:+78567381 | MS.gene38217:CDS |
| TTCAGATGTCAGGTGCCCTT+TGG | 0.371866 | 5.3:+78565818 | MS.gene38217:CDS |
| CTTTGGTCTCAGGAAATTGT+TGG | 0.374379 | 5.3:+78563758 | MS.gene38217:CDS |
| CCTGAGAAGGCTGTCGTACT+TGG | 0.374489 | 5.3:+78564292 | MS.gene38217:CDS |
| AACATGGAGACTTCAACTTT+GGG | 0.377183 | 5.3:+78569782 | MS.gene38217:CDS |
| AGGTCTATTAAATGAATATT+GGG | 0.377388 | 5.3:+78566320 | MS.gene38217:CDS |
| TCAGATGTCAGGTGCCCTTT+GGG | 0.378722 | 5.3:+78565819 | MS.gene38217:CDS |
| AATATCTACATTAGAATTTG+AGG | 0.379503 | 5.3:-78565797 | None:intergenic |
| GAAAGATCTGGCAGGTCAAA+AGG | 0.379750 | 5.3:+78563805 | MS.gene38217:CDS |
| CAGGAGGTGGATACCATAAA+TGG | 0.383739 | 5.3:-78566086 | None:intergenic |
| ACATAGCTCATCGTGGCATT+TGG | 0.385285 | 5.3:-78564779 | None:intergenic |
| GGATTGTTCTTCTTCTTCTT+CGG | 0.388009 | 5.3:-78560942 | None:intergenic |
| TTGCCGTGTCTGCCTCTTGA+AGG | 0.394115 | 5.3:-78563375 | None:intergenic |
| CCACCGGCACTCCCGCTCCT+TGG | 0.396476 | 5.3:+78561057 | MS.gene38217:CDS |
| TGGCAGGTCAAAAGGGAATC+TGG | 0.403669 | 5.3:+78563813 | MS.gene38217:CDS |
| TGTGTGCAGCATGAGAGTTC+GGG | 0.404164 | 5.3:+78567308 | MS.gene38217:intron |
| TTGGGATTATAACTTCAATA+GGG | 0.405007 | 5.3:-78564009 | None:intergenic |
| GGATCAACAGTCATAATATC+TGG | 0.405649 | 5.3:+78564097 | MS.gene38217:CDS |
| CAGTTCTTAAATGATACATC+AGG | 0.406053 | 5.3:+78566180 | MS.gene38217:CDS |
| CGTTGTTTCCACCCAACTCT+TGG | 0.407473 | 5.3:+78564711 | MS.gene38217:CDS |
| TACCAAGGTGTTAAACCTTC+AGG | 0.409467 | 5.3:-78566105 | None:intergenic |
| AATACATGCCAAGCTATAAC+CGG | 0.409711 | 5.3:-78563462 | None:intergenic |
| CTGGAAGAAGGCTGCCAGTC+AGG | 0.412342 | 5.3:+78569589 | MS.gene38217:CDS |
| GTTCCTCAAGTGAATAGAAA+TGG | 0.416961 | 5.3:+78561194 | MS.gene38217:CDS |
| AACTTCTGGTTCATTTGAAA+GGG | 0.417666 | 5.3:+78564588 | MS.gene38217:CDS |
| CCATCAGGAGGACAGTGTTC+CGG | 0.423188 | 5.3:-78565873 | None:intergenic |
| GTGGAAGCAAGGTCTTTGTT+TGG | 0.423730 | 5.3:+78563072 | MS.gene38217:CDS |
| AAACTTCTGGTTCATTTGAA+AGG | 0.425288 | 5.3:+78564587 | MS.gene38217:CDS |
| CATATTCCCTTCCGGACAAC+AGG | 0.427773 | 5.3:-78566135 | None:intergenic |
| TTGTCATCTGGGCAAGTTGA+CGG | 0.431286 | 5.3:+78564547 | MS.gene38217:CDS |
| CAATTTGAATGCAGTCCTAC+TGG | 0.434452 | 5.3:+78563518 | MS.gene38217:CDS |
| TCTCTTGCTTGGATCATTTG+TGG | 0.440008 | 5.3:+78563053 | MS.gene38217:CDS |
| AGGCTGCCAGTCAGGATGAT+TGG | 0.440039 | 5.3:+78569597 | MS.gene38217:CDS |
| CGCCGAAGTGTTCTACAGTA+AGG | 0.440525 | 5.3:+78565906 | MS.gene38217:CDS |
| TGTAGCTTGAACTGCTAATC+CGG | 0.441331 | 5.3:-78563904 | None:intergenic |
| TGCAGTTCCCGGTTATAGCT+TGG | 0.442640 | 5.3:+78563454 | MS.gene38217:CDS |
| GCCACGATGAGCTATGTTCC+AGG | 0.445094 | 5.3:+78564785 | MS.gene38217:CDS |
| CATAACACCTGCTTGAAGCC+TGG | 0.446107 | 5.3:-78569700 | None:intergenic |
| TTTGGAGGATTGCTGGAAGA+AGG | 0.446141 | 5.3:+78569577 | MS.gene38217:CDS |
| TCGTGAAGCCAAAGAAGATC+TGG | 0.446312 | 5.3:-78567452 | None:intergenic |
| TGTCATCTGGGCAAGTTGAC+GGG | 0.448348 | 5.3:+78564548 | MS.gene38217:CDS |
| CATGATTCATACTCGGTTGA+AGG | 0.448802 | 5.3:+78569629 | MS.gene38217:CDS |
| TTGAGAGTTCGCAAGCCCTC+TGG | 0.449165 | 5.3:-78566014 | None:intergenic |
| TGCCGGTGGGAGGACGGTTA+GGG | 0.450217 | 5.3:-78561043 | None:intergenic |
| ATTAGCCAGAACCGCTCAAC+TGG | 0.453084 | 5.3:+78565766 | MS.gene38217:CDS |
| GGTATTGTCAACCTGTTGTC+CGG | 0.455785 | 5.3:+78566124 | MS.gene38217:CDS |
| GTTCTGGTATGAATGTTTCA+AGG | 0.457355 | 5.3:+78563735 | MS.gene38217:CDS |
| AGACTTGATTAAATTGTGCT+TGG | 0.458678 | 5.3:+78569469 | MS.gene38217:CDS |
| CCCAAATCACCGCCTTTGAG+AGG | 0.458983 | 5.3:-78563581 | None:intergenic |
| TAGCTTCAAATTCTTTAACT+TGG | 0.459009 | 5.3:-78566377 | None:intergenic |
| CTCATCGTGGCATTTGGATA+AGG | 0.460876 | 5.3:-78564773 | None:intergenic |
| CGGCGTTATCTCTGTCCATC+AGG | 0.460893 | 5.3:-78565888 | None:intergenic |
| CCAAGTACGACAGCCTTCTC+AGG | 0.462348 | 5.3:-78564292 | None:intergenic |
| GGGAGGACGGTTAGGGATGG+CGG | 0.462467 | 5.3:-78561036 | None:intergenic |
| TCTTCAAAAGTTTGACTTTG+GGG | 0.462931 | 5.3:-78569725 | None:intergenic |
| AACAGAGAAAGCAGGAATAT+GGG | 0.469534 | 5.3:+78564264 | MS.gene38217:CDS |
| TGTAGCGTTTCTATGATAAT+GGG | 0.473278 | 5.3:-78564140 | None:intergenic |
| AATGTAGATATTCAGATGTC+AGG | 0.477301 | 5.3:+78565808 | MS.gene38217:CDS |
| GGACAAAATCTCTGCACCTC+TGG | 0.478166 | 5.3:-78564683 | None:intergenic |
| TGGCAAAGATGCTGGTACTC+AGG | 0.478574 | 5.3:+78568212 | MS.gene38217:CDS |
| CAACACTCCATATTCCCTTC+CGG | 0.479440 | 5.3:-78566143 | None:intergenic |
| TTGCGTGACAAGCTCCGCTC+AGG | 0.482147 | 5.3:-78564328 | None:intergenic |
| TGATAATGATCCGATTAAAC+CGG | 0.482281 | 5.3:+78561226 | MS.gene38217:CDS |
| AGACTCGGGCAGTTATATAC+TGG | 0.482516 | 5.3:+78563267 | MS.gene38217:CDS |
| GAGCGACGAGATGCACTACT+TGG | 0.483132 | 5.3:+78566342 | MS.gene38217:CDS |
| TGCGTCTTCTGATGAGTTGG+AGG | 0.483490 | 5.3:+78563334 | MS.gene38217:CDS |
| ACAAGAGTACATCTCTTGCT+TGG | 0.484583 | 5.3:+78563042 | MS.gene38217:CDS |
| CCAAGGAGCGGGAGTGCCGG+TGG | 0.485528 | 5.3:-78561057 | None:intergenic |
| TCTGGTTCATTTGAAAGGGA+TGG | 0.487105 | 5.3:+78564592 | MS.gene38217:CDS |
| GCAGACACGGCAAAGTAAGC+AGG | 0.487480 | 5.3:+78563385 | MS.gene38217:CDS |
| TCTGATGAGTTGGAGGCTGT+TGG | 0.488026 | 5.3:+78563341 | MS.gene38217:CDS |
| TGGATTGCAAGCAGATGCTC+TGG | 0.488573 | 5.3:-78565988 | None:intergenic |
| TCTCTGAGTTGTTAAGGCTA+GGG | 0.488987 | 5.3:+78567387 | MS.gene38217:CDS |
| GATGTTGCCAATTACGATAC+TGG | 0.489809 | 5.3:+78563152 | MS.gene38217:CDS |
| GTAGCTCAAGTGGTGAGCTT+TGG | 0.490479 | 5.3:+78563495 | MS.gene38217:CDS |
| TGCCGGCAAGCTGATGCTAA+TGG | 0.492102 | 5.3:+78569859 | MS.gene38217:CDS |
| TCTGTGACTCTTGCGAAATG+AGG | 0.494038 | 5.3:-78569549 | None:intergenic |
| ACTCTTGCGAAATGAGGAAC+TGG | 0.494741 | 5.3:-78569543 | None:intergenic |
| GTTGAAGACTGTGGCGGGTA+TGG | 0.496540 | 5.3:+78563011 | MS.gene38217:intron |
| ATGCTAATGGCAGTCATGTT+GGG | 0.496865 | 5.3:+78569872 | MS.gene38217:CDS |
| CCAATTACGATACTGGTAGT+TGG | 0.497318 | 5.3:+78563159 | MS.gene38217:CDS |
| AAGGGCTAGCTCTGAAGCAT+GGG | 0.498973 | 5.3:+78564423 | MS.gene38217:CDS |
| TTCAGAAACACTTCATGCAT+TGG | 0.499769 | 5.3:+78567502 | MS.gene38217:CDS |
| AAGCGAGGTGTCCAAGGAGC+GGG | 0.500560 | 5.3:-78561068 | None:intergenic |
| CTTGTCTCAAAGGCAATACC+TGG | 0.500995 | 5.3:-78569757 | None:intergenic |
| TGCCGTGTCTGCCTCTTGAA+GGG | 0.501392 | 5.3:-78563374 | None:intergenic |
| AGAGTTACTGAGAAATGTTA+TGG | 0.501943 | 5.3:+78566616 | MS.gene38217:CDS |
| AAAGATCTGGCAGGTCAAAA+GGG | 0.502682 | 5.3:+78563806 | MS.gene38217:CDS |
| GAAGGGCTAGCTCTGAAGCA+TGG | 0.503794 | 5.3:+78564422 | MS.gene38217:CDS |
| TTTCCATTTCTATTCACTTG+AGG | 0.504831 | 5.3:-78561197 | None:intergenic |
| GAGAAGGCTGTCGTACTTGG+AGG | 0.505027 | 5.3:+78564295 | MS.gene38217:CDS |
| TGAAGAAGGGCCTTCCCCTA+TGG | 0.506426 | 5.3:+78569922 | MS.gene38217:CDS |
| AATCTGGCCTCTTGATGTGC+AGG | 0.508011 | 5.3:+78563829 | MS.gene38217:CDS |
| AGCCTTATTTGATCCAAAAG+AGG | 0.510049 | 5.3:-78563210 | None:intergenic |
| CACCCTTCAAGAGGCAGACA+CGG | 0.511686 | 5.3:+78563372 | MS.gene38217:CDS |
| CACAAATTACATACTCTGCC+TGG | 0.511920 | 5.3:-78564803 | None:intergenic |
| AAACGCCATGTCAAAGACCT+TGG | 0.512278 | 5.3:-78563629 | None:intergenic |
| CTCGCTTATCCGTTCTCGCC+AGG | 0.512315 | 5.3:+78561084 | MS.gene38217:CDS |
| AGAAGGCTGTCGTACTTGGA+GGG | 0.512451 | 5.3:+78564296 | MS.gene38217:CDS |
| CTCGATTGAGAATAGATGTC+CGG | 0.512937 | 5.3:-78563290 | None:intergenic |
| CGGGAGTGCCGGTGGGAGGA+CGG | 0.513178 | 5.3:-78561049 | None:intergenic |
| TGTCCAAGGAGCGGGAGTGC+CGG | 0.513708 | 5.3:-78561060 | None:intergenic |
| GCTCGGCATTAAGAAAGATC+TGG | 0.513990 | 5.3:+78563793 | MS.gene38217:CDS |
| TGAAGGAGTTACCGGAGAAT+CGG | 0.514272 | 5.3:-78560985 | None:intergenic |
| GGTAAACTCGTGAGCAACAA+AGG | 0.516732 | 5.3:+78563602 | MS.gene38217:CDS |
| TGGTAGTTGGTTGGTTTCTG+TGG | 0.517230 | 5.3:+78563172 | MS.gene38217:CDS |
| TCAACAGCTGGCAAAGATGC+TGG | 0.517959 | 5.3:+78568204 | MS.gene38217:intron |
| TCTTGCGTCTTCTGATGAGT+TGG | 0.518235 | 5.3:+78563331 | MS.gene38217:CDS |
| TAATCCTGATTTATATTGCA+TGG | 0.518409 | 5.3:-78563945 | None:intergenic |
| TTCCATGAGGCTTCGAATAG+GGG | 0.518706 | 5.3:+78564063 | MS.gene38217:CDS |
| TGGGACATGATACAGTTAGT+TGG | 0.519549 | 5.3:+78565838 | MS.gene38217:CDS |
| AAGAGCCGGAGTTCTCGTTA+TGG | 0.519920 | 5.3:+78569498 | MS.gene38217:CDS |
| GCTAATCCGGTCCTTACAAA+AGG | 0.521429 | 5.3:-78563891 | None:intergenic |
| CTTCAACCACACTATTCCAT+AGG | 0.522639 | 5.3:-78569938 | None:intergenic |
| GGACCTTTGACGTGTTTGCA+TGG | 0.522851 | 5.3:+78569519 | MS.gene38217:CDS |
| GAGGTTCGTCGGAGCGGTGA+AGG | 0.523285 | 5.3:-78561002 | None:intergenic |
| CTCCTGAAGGTTTAACACCT+TGG | 0.524267 | 5.3:+78566103 | MS.gene38217:CDS |
| GGTGAAGTACCTGGCGAGAA+CGG | 0.524272 | 5.3:-78561093 | None:intergenic |
| GAAGACTGTGGCGGGTATGG+TGG | 0.525466 | 5.3:+78563014 | MS.gene38217:CDS |
| CGGAGCGGTGAAGGAGTTAC+CGG | 0.525820 | 5.3:-78560993 | None:intergenic |
| CTTCAACCGAGTATGAATCA+TGG | 0.526251 | 5.3:-78569628 | None:intergenic |
| TCCCACACTATCCGATTCTC+CGG | 0.526849 | 5.3:+78560974 | MS.gene38217:CDS |
| ACTTGAAGCTAAGGAACTTG+TGG | 0.527108 | 5.3:+78569424 | MS.gene38217:CDS |
| GGTGATAACAGAATTGAAGA+AGG | 0.527864 | 5.3:+78569908 | MS.gene38217:CDS |
| ACAAAAGGTTGCAACGAGAA+TGG | 0.530507 | 5.3:-78563876 | None:intergenic |
| TTCTCTGAGTTGTTAAGGCT+AGG | 0.532515 | 5.3:+78567386 | MS.gene38217:CDS |
| GGAGCGGGAGTGCCGGTGGG+AGG | 0.532916 | 5.3:-78561053 | None:intergenic |
| AACGCCATGTCAAAGACCTT+GGG | 0.533795 | 5.3:-78563628 | None:intergenic |
| CTCTGAGTTGTTAAGGCTAG+GGG | 0.533939 | 5.3:+78567388 | MS.gene38217:CDS |
| AAGACTGTGGCGGGTATGGT+GGG | 0.533980 | 5.3:+78563015 | MS.gene38217:CDS |
| CCGGAACACTGTCCTCCTGA+TGG | 0.535421 | 5.3:+78565873 | MS.gene38217:CDS |
| TTGATTAAATTGTGCTTGGA+AGG | 0.535554 | 5.3:+78569473 | MS.gene38217:CDS |
| TCTCACTTCACTTGAAGCTA+AGG | 0.537465 | 5.3:+78569415 | MS.gene38217:CDS |
| GGTGTTAAACCTTCAGGAGG+TGG | 0.537506 | 5.3:-78566099 | None:intergenic |
| ATGAGAGTTCGGGATCTACT+GGG | 0.537768 | 5.3:+78567318 | MS.gene38217:CDS |
| ATCCCTAACCGTCCTCCCAC+CGG | 0.540884 | 5.3:+78561041 | MS.gene38217:CDS |
| TGTTGTCCAATGTTTAGCTA+AGG | 0.541884 | 5.3:-78564659 | None:intergenic |
| TTCAACCACACTATTCCATA+GGG | 0.543155 | 5.3:-78569937 | None:intergenic |
| TTGACACCTTAGCTAAACAT+TGG | 0.543697 | 5.3:+78564653 | MS.gene38217:CDS |
| AGTGAATAGAAATGGAAAAG+AGG | 0.543855 | 5.3:+78561202 | MS.gene38217:CDS |
| GATGCTAATGGCAGTCATGT+TGG | 0.545635 | 5.3:+78569871 | MS.gene38217:CDS |
| CAAGGAGCGGGAGTGCCGGT+GGG | 0.545831 | 5.3:-78561056 | None:intergenic |
| GAGCGTGGAGAAGAACATAA+AGG | 0.548302 | 5.3:+78566300 | MS.gene38217:CDS |
| TTACTGTTCAGATGCAGAGT+TGG | 0.549327 | 5.3:+78565951 | MS.gene38217:CDS |
| TTGGATCATTTGTGGAAGCA+AGG | 0.550203 | 5.3:+78563061 | MS.gene38217:CDS |
| ACTTCTCATTTCCCTCTCAA+AGG | 0.551135 | 5.3:+78563569 | MS.gene38217:CDS |
| CGTGACAAGCTCCGCTCAGG+TGG | 0.552020 | 5.3:-78564325 | None:intergenic |
| GACAAAGGGCGGCTTTGAGT+GGG | 0.552893 | 5.3:+78564458 | MS.gene38217:CDS |
| TTGGGTGGAAACAACGGCCA+TGG | 0.554586 | 5.3:-78564704 | None:intergenic |
| CAGAACCGCTCAACTGGTGT+TGG | 0.555320 | 5.3:+78565772 | MS.gene38217:CDS |
| TCTGCAGACGATTATGAAGA+AGG | 0.556184 | 5.3:+78564226 | MS.gene38217:CDS |
| ACGGATAAGCGAGGTGTCCA+AGG | 0.561397 | 5.3:-78561074 | None:intergenic |
| CGATTATGAAGAAGGTGCGT+GGG | 0.561589 | 5.3:+78564234 | MS.gene38217:CDS |
| TTGTCAACCTGTTGTCCGGA+AGG | 0.562058 | 5.3:+78566128 | MS.gene38217:CDS |
| GTGCTTGGAAGGTGAAGAGC+CGG | 0.562964 | 5.3:+78569484 | MS.gene38217:CDS |
| TTACGATACTGGTAGTTGGT+TGG | 0.563110 | 5.3:+78563163 | MS.gene38217:CDS |
| TTATGGTATCCACCTCCTGA+AGG | 0.563692 | 5.3:+78566090 | MS.gene38217:CDS |
| ATCTGCAATGATTCAGCTGA+GGG | 0.564377 | 5.3:+78565729 | MS.gene38217:CDS |
| ATTCATACTCGGTTGAAGGA+TGG | 0.565033 | 5.3:+78569633 | MS.gene38217:CDS |
| GGTGGGAGGACGGTTAGGGA+TGG | 0.565949 | 5.3:-78561039 | None:intergenic |
| ACGGATGCTACAAAGTTATG+TGG | 0.567257 | 5.3:+78566567 | MS.gene38217:CDS |
| AGACAAAGGGCGGCTTTGAG+TGG | 0.567989 | 5.3:+78564457 | MS.gene38217:CDS |
| TACCGGAGAATCGGATAGTG+TGG | 0.570173 | 5.3:-78560976 | None:intergenic |
| CTATCAATCGCTAAACGACA+CGG | 0.571068 | 5.3:+78566548 | MS.gene38217:CDS |
| GTCCTACTGGCATTCGTCGA+AGG | 0.572596 | 5.3:+78563531 | MS.gene38217:CDS |
| AATATGGGTAATACCTGAGA+AGG | 0.574117 | 5.3:+78564279 | MS.gene38217:CDS |
| TCCATGAGGCTTCGAATAGG+GGG | 0.575458 | 5.3:+78564064 | MS.gene38217:CDS |
| CACAATAGCCATACCTGCAA+AGG | 0.576216 | 5.3:-78567636 | None:intergenic |
| TAACTGTATCATGTCCCAAA+GGG | 0.579314 | 5.3:-78565833 | None:intergenic |
| CCAAATCACCGCCTTTGAGA+GGG | 0.580277 | 5.3:-78563580 | None:intergenic |
| ATGTAGAGAGTACAAATGAG+AGG | 0.583873 | 5.3:+78563969 | MS.gene38217:CDS |
| ATGCTCCAAAATAATTTGCA+AGG | 0.584213 | 5.3:-78565695 | None:intergenic |
| CGGAAGGGAATATGGAGTGT+TGG | 0.585372 | 5.3:+78566144 | MS.gene38217:CDS |
| GTTGGAACAGATGCTGAGCT+CGG | 0.586515 | 5.3:+78563776 | MS.gene38217:CDS |
| ATTATGACTGTTGATCCTGA+TGG | 0.589296 | 5.3:-78564091 | None:intergenic |
| GCCCTTGCGTGTAGCTCAAG+TGG | 0.589363 | 5.3:+78563485 | MS.gene38217:CDS |
| CACCACTTGAGCTACACGCA+AGG | 0.590581 | 5.3:-78563487 | None:intergenic |
| AGTTCTTAAATGATACATCA+GGG | 0.591073 | 5.3:+78566181 | MS.gene38217:CDS |
| TCTTCATAATCGTCTGCAGA+AGG | 0.591747 | 5.3:-78564223 | None:intergenic |
| GTAAACTCGTGAGCAACAAA+GGG | 0.592305 | 5.3:+78563603 | MS.gene38217:CDS |
| GTTGTATTAACAGAGAAAGC+AGG | 0.593102 | 5.3:+78564256 | MS.gene38217:CDS |
| TATCGTTGAATGAGGTTCGT+CGG | 0.593403 | 5.3:-78561013 | None:intergenic |
| GAAGACGCAAGACTAGTGAC+AGG | 0.594711 | 5.3:-78563320 | None:intergenic |
| TTTACTCCAATCATCCTGAC+TGG | 0.598474 | 5.3:-78569603 | None:intergenic |
| GAGCGGAGCTTGTCACGCAA+AGG | 0.598862 | 5.3:+78564331 | MS.gene38217:CDS |
| ACCACTTGAGCTACACGCAA+GGG | 0.601339 | 5.3:-78563486 | None:intergenic |
| CATGGAGACTTCAACTTTGG+GGG | 0.602383 | 5.3:+78569784 | MS.gene38217:CDS |
| GGTCCATGCAAACACGTCAA+AGG | 0.602542 | 5.3:-78569522 | None:intergenic |
| AGTGATAGAAGAGATCGAGC+AGG | 0.602944 | 5.3:+78567553 | MS.gene38217:CDS |
| TTTGTGCAATAGAAAGACTC+GGG | 0.603848 | 5.3:+78563253 | MS.gene38217:CDS |
| TAATTGGCAACATCATTGAA+AGG | 0.604334 | 5.3:-78563143 | None:intergenic |
| TCATCTACCTGCACATCAAG+AGG | 0.606868 | 5.3:-78563836 | None:intergenic |
| ACATGGAGACTTCAACTTTG+GGG | 0.608204 | 5.3:+78569783 | MS.gene38217:CDS |
| GATAGAAGAGATCGAGCAGG+TGG | 0.608329 | 5.3:+78567556 | MS.gene38217:CDS |
| GAAGGCTGTCGTACTTGGAG+GGG | 0.609019 | 5.3:+78564297 | MS.gene38217:CDS |
| GGCATTAAGAAAGATCTGGC+AGG | 0.610080 | 5.3:+78563797 | MS.gene38217:CDS |
| TGCTTGCAATCCAGATCCAG+AGG | 0.611291 | 5.3:+78565998 | MS.gene38217:CDS |
| ACGATTATGAAGAAGGTGCG+TGG | 0.615753 | 5.3:+78564233 | MS.gene38217:CDS |
| GGGTTCTGGAGATAGACAAA+GGG | 0.615753 | 5.3:+78564444 | MS.gene38217:CDS |
| CAAGAGTTGGGTGGAAACAA+CGG | 0.616163 | 5.3:-78564710 | None:intergenic |
| CTAACTGTATCATGTCCCAA+AGG | 0.617397 | 5.3:-78565834 | None:intergenic |
| TGTCAACCTGTTGTCCGGAA+GGG | 0.618332 | 5.3:+78566129 | MS.gene38217:CDS |
| ATGCAGTTGAAGACTGTGGC+GGG | 0.619454 | 5.3:+78563006 | MS.gene38217:intron |
| GTGATAACAGAATTGAAGAA+GGG | 0.620813 | 5.3:+78569909 | MS.gene38217:CDS |
| AGATGCTGGTACTCAGGTGA+AGG | 0.622179 | 5.3:+78568218 | MS.gene38217:CDS |
| TAAGGCTGCGAAACATGTTG+TGG | 0.624502 | 5.3:+78563226 | MS.gene38217:CDS |
| ATGAAGTGTTTCTGAAGCAG+AGG | 0.625018 | 5.3:-78567495 | None:intergenic |
| GGGGTTCTGGAGATAGACAA+AGG | 0.625032 | 5.3:+78564443 | MS.gene38217:CDS |
| AACCTTACTGTAGAACACTT+CGG | 0.625661 | 5.3:-78565908 | None:intergenic |
| ACAGTCATAATATCTGGCGA+TGG | 0.627708 | 5.3:+78564103 | MS.gene38217:CDS |
| GTGAGAAAACACCCTTCAAG+AGG | 0.628086 | 5.3:+78563363 | MS.gene38217:CDS |
| TGGATAAGGCAAGAAAGTGA+AGG | 0.628675 | 5.3:-78564759 | None:intergenic |
| TTCTGGAGATAGACAAAGGG+CGG | 0.628979 | 5.3:+78564447 | MS.gene38217:CDS |
| AGGATCCAACACCAGTTGAG+CGG | 0.629719 | 5.3:-78565777 | None:intergenic |
| GATGGCGGTATCGTTGAATG+AGG | 0.630649 | 5.3:-78561021 | None:intergenic |
| TCTCATTTCCCTCTCAAAGG+CGG | 0.631329 | 5.3:+78563572 | MS.gene38217:CDS |
| TAAATTCCATGATTCATACT+CGG | 0.631634 | 5.3:+78569622 | MS.gene38217:CDS |
| TCGGGCAGTTATATACTGGC+CGG | 0.633339 | 5.3:+78563271 | MS.gene38217:CDS |
| CCACACTATTCCATAGGGGA+AGG | 0.633697 | 5.3:-78569932 | None:intergenic |
| GATAGTGTGGGAGGAGTGCG+AGG | 0.634233 | 5.3:-78560963 | None:intergenic |
| TGAGCAACAAAGGGTACCCA+AGG | 0.634289 | 5.3:+78563612 | MS.gene38217:CDS |
| TTTGATTTACCATATGACGC+TGG | 0.634704 | 5.3:+78564175 | MS.gene38217:CDS |
| ATGCGAAGTAATCTTCATAG+TGG | 0.635647 | 5.3:-78566522 | None:intergenic |
| CCATGAGGCTTCGAATAGGG+GGG | 0.635790 | 5.3:+78564065 | MS.gene38217:CDS |
| GCCTTTGAGACAAGAAAACA+TGG | 0.636118 | 5.3:+78569766 | MS.gene38217:CDS |
| ACCGGAGAATCGGATAGTGT+GGG | 0.637430 | 5.3:-78560975 | None:intergenic |
| AACACAATTCATAGAAGACG+CGG | 0.638213 | 5.3:-78563108 | None:intergenic |
| AAGGTCCATAACGAGAACTC+CGG | 0.643422 | 5.3:-78569503 | None:intergenic |
| TTGAATGAGGTTCGTCGGAG+CGG | 0.646153 | 5.3:-78561008 | None:intergenic |
| TATCTGCAATGATTCAGCTG+AGG | 0.646525 | 5.3:+78565728 | MS.gene38217:CDS |
| TAAGCGAGGTGTCCAAGGAG+CGG | 0.648275 | 5.3:-78561069 | None:intergenic |
| GATCTGCACAAGAAGAGACA+AGG | 0.649372 | 5.3:+78564368 | MS.gene38217:CDS |
| GGTGAAGGTTGATCGCATTG+AGG | 0.651251 | 5.3:+78568233 | MS.gene38217:CDS |
| GGAGAATCGGATAGTGTGGG+AGG | 0.652552 | 5.3:-78560972 | None:intergenic |
| GATGTGCAGGTAGATGATCA+TGG | 0.655285 | 5.3:+78563842 | MS.gene38217:CDS |
| TGAGAGTTCGGGATCTACTG+GGG | 0.656881 | 5.3:+78567319 | MS.gene38217:CDS |
| CGTTATCTCTGTCCATCAGG+AGG | 0.663434 | 5.3:-78565885 | None:intergenic |
| ATACATGCCAAGCTATAACC+GGG | 0.665882 | 5.3:-78563461 | None:intergenic |
| TTCCTTCGACGAATGCCAGT+AGG | 0.666897 | 5.3:-78563533 | None:intergenic |
| ATATGCCTCAAGTAGCACTT+CGG | 0.669536 | 5.3:-78566253 | None:intergenic |
| GAGAGTTCGGGATCTACTGG+GGG | 0.671738 | 5.3:+78567320 | MS.gene38217:CDS |
| GCTTGCAATCCAGATCCAGA+GGG | 0.673391 | 5.3:+78565999 | MS.gene38217:CDS |
| GGTACCCAAGGTCTTTGACA+TGG | 0.675599 | 5.3:+78563624 | MS.gene38217:CDS |
| GGTTGAAGGATGGAGTGATG+AGG | 0.678471 | 5.3:+78569643 | MS.gene38217:CDS |
| GTTACTGCTAAAATTGAGCG+TGG | 0.678682 | 5.3:+78566285 | MS.gene38217:CDS |
| TGTGATGCAGTTGAAGACTG+TGG | 0.686077 | 5.3:+78563002 | MS.gene38217:intron |
| GAGGGGTTGAACCACCTGAG+CGG | 0.691284 | 5.3:+78564314 | MS.gene38217:CDS |
| AGGGCTAGCTCTGAAGCATG+GGG | 0.701737 | 5.3:+78564424 | MS.gene38217:CDS |
| CAAGGTGTTAAACCTTCAGG+AGG | 0.702514 | 5.3:-78566102 | None:intergenic |
| CTGGCGAGAACGGATAAGCG+AGG | 0.710964 | 5.3:-78561083 | None:intergenic |
| GCCTGGAACATAGCTCATCG+TGG | 0.711754 | 5.3:-78564786 | None:intergenic |
| ACACAATTCATAGAAGACGC+GGG | 0.712550 | 5.3:-78563107 | None:intergenic |
| TAGTTGGTGAGAGAGCTCGC+CGG | 0.715308 | 5.3:+78565854 | MS.gene38217:CDS |
| GATGCAGTTGAAGACTGTGG+CGG | 0.716394 | 5.3:+78563005 | MS.gene38217:intron |
| AAACATTGGACAACAACCAG+AGG | 0.717936 | 5.3:+78564667 | MS.gene38217:CDS |
| TCAACCACACTATTCCATAG+GGG | 0.725834 | 5.3:-78569936 | None:intergenic |
| ACAACAGGTTGACAATACCA+AGG | 0.729327 | 5.3:-78566120 | None:intergenic |
| ACTGACCGAAGTGCTACTTG+AGG | 0.734375 | 5.3:+78566248 | MS.gene38217:CDS |
| ATGTTGGGTAGTGAGCATAG+TGG | 0.780865 | 5.3:+78569887 | MS.gene38217:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 78560927 | 78569949 | 78560927 | ID=MS.gene38217 |
| chr5.3 | mRNA | 78560927 | 78569949 | 78560927 | ID=MS.gene38217.t1;Parent=MS.gene38217 |
| chr5.3 | exon | 78560927 | 78561105 | 78560927 | ID=MS.gene38217.t1.exon1;Parent=MS.gene38217.t1 |
| chr5.3 | CDS | 78560927 | 78561105 | 78560927 | ID=cds.MS.gene38217.t1;Parent=MS.gene38217.t1 |
| chr5.3 | exon | 78561193 | 78561317 | 78561193 | ID=MS.gene38217.t1.exon2;Parent=MS.gene38217.t1 |
| chr5.3 | CDS | 78561193 | 78561317 | 78561193 | ID=cds.MS.gene38217.t1;Parent=MS.gene38217.t1 |
| chr5.3 | exon | 78563012 | 78564811 | 78563012 | ID=MS.gene38217.t1.exon3;Parent=MS.gene38217.t1 |
| chr5.3 | CDS | 78563012 | 78564811 | 78563012 | ID=cds.MS.gene38217.t1;Parent=MS.gene38217.t1 |
| chr5.3 | exon | 78565689 | 78566407 | 78565689 | ID=MS.gene38217.t1.exon4;Parent=MS.gene38217.t1 |
| chr5.3 | CDS | 78565689 | 78566407 | 78565689 | ID=cds.MS.gene38217.t1;Parent=MS.gene38217.t1 |
| chr5.3 | exon | 78566485 | 78566637 | 78566485 | ID=MS.gene38217.t1.exon5;Parent=MS.gene38217.t1 |
| chr5.3 | CDS | 78566485 | 78566637 | 78566485 | ID=cds.MS.gene38217.t1;Parent=MS.gene38217.t1 |
| chr5.3 | exon | 78567317 | 78567644 | 78567317 | ID=MS.gene38217.t1.exon6;Parent=MS.gene38217.t1 |
| chr5.3 | CDS | 78567317 | 78567644 | 78567317 | ID=cds.MS.gene38217.t1;Parent=MS.gene38217.t1 |
| chr5.3 | exon | 78568211 | 78568281 | 78568211 | ID=MS.gene38217.t1.exon7;Parent=MS.gene38217.t1 |
| chr5.3 | CDS | 78568211 | 78568281 | 78568211 | ID=cds.MS.gene38217.t1;Parent=MS.gene38217.t1 |
| chr5.3 | exon | 78569398 | 78569949 | 78569398 | ID=MS.gene38217.t1.exon8;Parent=MS.gene38217.t1 |
| chr5.3 | CDS | 78569398 | 78569949 | 78569398 | ID=cds.MS.gene38217.t1;Parent=MS.gene38217.t1 |
| Gene Sequence |
| Protein sequence |
