Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38242.t1 | XP_024639978.1 | 96.7 | 760 | 25 | 0 | 1 | 760 | 1 | 760 | 0.00E+00 | 1543.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38242.t1 | Q84VX0 | 71.2 | 760 | 210 | 4 | 1 | 758 | 1 | 753 | 0.0e+00 | 1157.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38242.t1 | G7K4U6 | 96.7 | 760 | 25 | 0 | 1 | 760 | 1 | 760 | 0.0e+00 | 1543.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059517 | MS.gene38242 | -0.80094 | 1.14E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04882 | MS.gene38242 | PPI |
| MS.gene072324 | MS.gene38242 | PPI |
| MS.gene014136 | MS.gene38242 | PPI |
| MS.gene017914 | MS.gene38242 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38242.t1 | MTR_5g096820 | 96.711 | 760 | 25 | 0 | 1 | 760 | 1 | 760 | 0.0 | 1531 |
| MS.gene38242.t1 | MTR_5g096820 | 97.327 | 636 | 17 | 0 | 1 | 636 | 1 | 636 | 0.0 | 1299 |
| MS.gene38242.t1 | MTR_7g091880 | 58.291 | 784 | 289 | 6 | 1 | 760 | 1 | 770 | 0.0 | 943 |
| MS.gene38242.t1 | MTR_1g052515 | 58.816 | 760 | 293 | 2 | 1 | 760 | 1 | 740 | 0.0 | 937 |
| MS.gene38242.t1 | MTR_4g115330 | 52.225 | 764 | 317 | 9 | 1 | 760 | 76 | 795 | 0.0 | 805 |
| MS.gene38242.t1 | MTR_4g115330 | 54.885 | 696 | 284 | 8 | 69 | 760 | 1 | 670 | 0.0 | 788 |
| MS.gene38242.t1 | MTR_3g075510 | 47.530 | 749 | 377 | 6 | 1 | 744 | 1 | 738 | 0.0 | 723 |
| MS.gene38242.t1 | MTR_3g075510 | 47.806 | 638 | 321 | 4 | 1 | 636 | 1 | 628 | 0.0 | 633 |
| MS.gene38242.t1 | MTR_6g004880 | 39.733 | 750 | 412 | 13 | 7 | 735 | 35 | 765 | 0.0 | 545 |
| MS.gene38242.t1 | MTR_4g105250 | 39.351 | 770 | 391 | 15 | 7 | 735 | 22 | 756 | 1.45e-180 | 536 |
| MS.gene38242.t1 | MTR_3g077280 | 38.693 | 765 | 419 | 12 | 7 | 742 | 28 | 771 | 2.14e-179 | 533 |
| MS.gene38242.t1 | MTR_5g065520 | 76.349 | 241 | 19 | 3 | 513 | 753 | 214 | 416 | 1.70e-109 | 340 |
| MS.gene38242.t1 | MTR_8g088020 | 38.710 | 465 | 258 | 9 | 296 | 749 | 380 | 828 | 1.04e-96 | 319 |
| MS.gene38242.t1 | MTR_8g088020 | 35.366 | 246 | 137 | 4 | 42 | 282 | 70 | 298 | 1.87e-41 | 163 |
| MS.gene38242.t1 | MTR_1g097450 | 38.217 | 471 | 270 | 9 | 284 | 739 | 370 | 834 | 1.48e-96 | 319 |
| MS.gene38242.t1 | MTR_1g097450 | 34.263 | 251 | 133 | 4 | 42 | 282 | 75 | 303 | 1.59e-39 | 157 |
| MS.gene38242.t1 | MTR_7g106910 | 37.684 | 475 | 264 | 8 | 291 | 747 | 384 | 844 | 3.31e-95 | 315 |
| MS.gene38242.t1 | MTR_7g106910 | 35.223 | 247 | 136 | 3 | 42 | 282 | 71 | 299 | 4.78e-41 | 162 |
| MS.gene38242.t1 | MTR_7g109790 | 36.416 | 346 | 199 | 6 | 412 | 747 | 9 | 343 | 2.56e-61 | 210 |
| MS.gene38242.t1 | MTR_7g055620 | 85.915 | 71 | 7 | 1 | 119 | 189 | 262 | 329 | 4.57e-32 | 129 |
| MS.gene38242.t1 | MTR_3g110050 | 76.812 | 69 | 16 | 0 | 681 | 749 | 1 | 69 | 9.00e-16 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38242.t1 | AT1G55740 | 71.184 | 760 | 210 | 4 | 1 | 758 | 1 | 753 | 0.0 | 1113 |
| MS.gene38242.t1 | AT3G57520 | 58.951 | 782 | 286 | 3 | 1 | 758 | 1 | 771 | 0.0 | 984 |
| MS.gene38242.t1 | AT3G57520 | 62.519 | 667 | 239 | 2 | 1 | 667 | 1 | 656 | 0.0 | 905 |
| MS.gene38242.t1 | AT5G20250 | 54.606 | 749 | 318 | 7 | 1 | 744 | 96 | 827 | 0.0 | 849 |
| MS.gene38242.t1 | AT5G20250 | 54.558 | 746 | 323 | 6 | 1 | 744 | 1 | 732 | 0.0 | 848 |
| MS.gene38242.t1 | AT5G20250 | 54.558 | 746 | 323 | 6 | 1 | 744 | 1 | 732 | 0.0 | 848 |
| MS.gene38242.t1 | AT5G20250 | 54.558 | 746 | 323 | 6 | 1 | 744 | 1 | 732 | 0.0 | 848 |
| MS.gene38242.t1 | AT3G57520 | 62.500 | 568 | 199 | 3 | 1 | 568 | 1 | 554 | 0.0 | 771 |
| MS.gene38242.t1 | AT5G40390 | 38.521 | 771 | 423 | 15 | 9 | 748 | 24 | 774 | 4.71e-178 | 530 |
| MS.gene38242.t1 | AT4G01970 | 38.065 | 465 | 266 | 10 | 296 | 742 | 398 | 858 | 6.80e-98 | 323 |
| MS.gene38242.t1 | AT4G01970 | 32.595 | 316 | 163 | 7 | 21 | 305 | 49 | 345 | 3.26e-41 | 162 |
| MS.gene38242.t1 | AT4G01970 | 38.065 | 465 | 266 | 10 | 296 | 742 | 445 | 905 | 1.69e-97 | 323 |
| MS.gene38242.t1 | AT4G01970 | 32.595 | 316 | 163 | 7 | 21 | 305 | 96 | 392 | 4.39e-41 | 162 |
Find 207 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCTTCCTTGCCGTCTTTC+TGG | 0.066893 | 5.3:-78241378 | None:intergenic |
| TTAGAGCTTCAGATGATTTC+TGG | 0.146587 | 5.3:+78242094 | MS.gene38242:CDS |
| TCTCGGGATTTCATGGTAAT+TGG | 0.169806 | 5.3:-78243165 | None:intergenic |
| GGGACTCATTTGGTGTTTAT+TGG | 0.178805 | 5.3:+78240457 | MS.gene38242:CDS |
| GGACTCATTTGGTGTTTATT+GGG | 0.187135 | 5.3:+78240458 | MS.gene38242:CDS |
| TTAGATACCATTGCAATTAA+TGG | 0.192004 | 5.3:+78241702 | MS.gene38242:CDS |
| CAATCCTTGGTTGGTCTTCC+TGG | 0.200624 | 5.3:-78242670 | None:intergenic |
| GAACATTTCTATTGATTTAT+AGG | 0.201885 | 5.3:+78243485 | MS.gene38242:CDS |
| CATTCATGTTCCATATCTTT+AGG | 0.258825 | 5.3:-78242822 | None:intergenic |
| GTTCTTGTTACTCCTGCTTC+TGG | 0.263308 | 5.3:+78233656 | MS.gene38242:CDS |
| TTGATCAATGGTGCATTTCT+TGG | 0.278920 | 5.3:+78233686 | MS.gene38242:CDS |
| TATCATTACCTGACATAAAT+AGG | 0.281912 | 5.3:-78242369 | None:intergenic |
| CGACAGTGGCAGATGATAAA+TGG | 0.300808 | 5.3:+78242980 | MS.gene38242:CDS |
| CAACAAATGATTCCGTTATC+AGG | 0.308551 | 5.3:-78241921 | None:intergenic |
| GCACGCAATAACAGGATATT+GGG | 0.318440 | 5.3:+78241578 | MS.gene38242:CDS |
| TTCATATTCTCGGGATTTCA+TGG | 0.321029 | 5.3:-78243172 | None:intergenic |
| GCACAGTCACTGACATCATT+AGG | 0.326937 | 5.3:+78242935 | MS.gene38242:CDS |
| GGTGTCAAATTTGCTCCTAT+TGG | 0.331292 | 5.3:+78243231 | MS.gene38242:CDS |
| TTAATCAAGATGTTCAATTC+AGG | 0.335147 | 5.3:+78243255 | MS.gene38242:CDS |
| CCAAACCAGTTCAACATATC+TGG | 0.338607 | 5.3:-78240930 | None:intergenic |
| TCTGGTGGTTCTTTGATCAA+TGG | 0.352616 | 5.3:+78233674 | MS.gene38242:CDS |
| CATCTGCCACTGTCGATAAA+TGG | 0.356356 | 5.3:-78242972 | None:intergenic |
| GGAGCAAATTTGACACCATT+TGG | 0.358099 | 5.3:-78243225 | None:intergenic |
| GGCACGCAATAACAGGATAT+TGG | 0.359380 | 5.3:+78241577 | MS.gene38242:CDS |
| CAGAATATCCTTGAAACTCT+TGG | 0.359438 | 5.3:+78241822 | MS.gene38242:CDS |
| ATATTAAGAGCTAAACTTCC+AGG | 0.366671 | 5.3:+78242652 | MS.gene38242:CDS |
| TTTGCTTATTGAAGCACATA+AGG | 0.367083 | 5.3:+78234206 | MS.gene38242:CDS |
| GCAGTCAAAGAGTTCAGTTC+TGG | 0.368353 | 5.3:+78243282 | MS.gene38242:CDS |
| CATTTGGTGTTTATTGGGGC+TGG | 0.372723 | 5.3:+78240463 | MS.gene38242:CDS |
| TGGAACATGAATGACTATTC+TGG | 0.373902 | 5.3:+78242832 | MS.gene38242:CDS |
| TGGTGTTTCTTCTGATCAAA+AGG | 0.383403 | 5.3:+78233706 | MS.gene38242:CDS |
| CTGGATTCTCGTCGTGGATA+AGG | 0.394790 | 5.3:-78242912 | None:intergenic |
| GCCACACCCGCGCACTTTCA+TGG | 0.396420 | 5.3:-78243328 | None:intergenic |
| CTAGCATCCGCTGGTATTGA+TGG | 0.397699 | 5.3:+78241783 | MS.gene38242:CDS |
| CTTGATGGTGTTAGGGAAGA+AGG | 0.410849 | 5.3:+78233610 | MS.gene38242:CDS |
| ATTGCAGTCTCCTAAAGATA+TGG | 0.412765 | 5.3:+78242812 | MS.gene38242:intron |
| TTGACTCCAGGAGATGAGAT+AGG | 0.414473 | 5.3:-78241657 | None:intergenic |
| TGTTTCCATTCAACACCATT+GGG | 0.415542 | 5.3:-78241192 | None:intergenic |
| AAGATTGAAGTCGTGGTGTC+CGG | 0.416723 | 5.3:-78242599 | None:intergenic |
| GTGAATTTATGCAGCCAGAT+TGG | 0.418742 | 5.3:+78242181 | MS.gene38242:CDS |
| TGAATTTATGCAGCCAGATT+GGG | 0.419847 | 5.3:+78242182 | MS.gene38242:CDS |
| AAAGTTGATTACTGCTGATT+CGG | 0.420766 | 5.3:+78243380 | MS.gene38242:CDS |
| GCATTTGTTATGATTTCATA+AGG | 0.421253 | 5.3:-78240493 | None:intergenic |
| CCAGATATGTTGAACTGGTT+TGG | 0.421533 | 5.3:+78240930 | MS.gene38242:CDS |
| GCTTTCCCTATCTCATCTCC+TGG | 0.423799 | 5.3:+78241651 | MS.gene38242:CDS |
| ATTGGAATAGAAACATCCTT+TGG | 0.425085 | 5.3:-78243147 | None:intergenic |
| ATTCAGTTACGAGGAAGAAT+CGG | 0.425977 | 5.3:+78243413 | MS.gene38242:CDS |
| GATGGAAACTTGATGGTGTT+AGG | 0.426147 | 5.3:+78233602 | MS.gene38242:CDS |
| TAATTCCGTCACAGGGACTA+TGG | 0.429944 | 5.3:-78243202 | None:intergenic |
| GGAATTTGATGGGACTCATT+TGG | 0.432327 | 5.3:+78240447 | MS.gene38242:CDS |
| TAATGCTTCATCTGGTTGGT+TGG | 0.433017 | 5.3:-78241682 | None:intergenic |
| CTTTGATATAACTCTTTCTC+CGG | 0.434638 | 5.3:-78243462 | None:intergenic |
| AGGGAAGAAGGTTCTGAGTC+AGG | 0.435038 | 5.3:+78233622 | MS.gene38242:CDS |
| GATTTCAGGTCTGTTCTTCA+AGG | 0.435154 | 5.3:+78234315 | MS.gene38242:CDS |
| TTGATGCAGTTCAAAGCGTT+CGG | 0.437922 | 5.3:+78242065 | MS.gene38242:intron |
| TCCATGAAAGTGCGCGGGTG+TGG | 0.441350 | 5.3:+78243327 | MS.gene38242:CDS |
| CACAGTCACTGACATCATTA+GGG | 0.443981 | 5.3:+78242936 | MS.gene38242:CDS |
| TACCTCTTTCCATCTCTAGC+AGG | 0.444123 | 5.3:-78242706 | None:intergenic |
| AATGACTATTCTGGAGTTGT+TGG | 0.457081 | 5.3:+78242841 | MS.gene38242:CDS |
| AACATCTTGATTAAACCAAT+AGG | 0.457563 | 5.3:-78243246 | None:intergenic |
| TATGTGTGGCACGCAATAAC+AGG | 0.457665 | 5.3:+78241570 | MS.gene38242:CDS |
| ATGACTATTCTGGAGTTGTT+GGG | 0.459794 | 5.3:+78242842 | MS.gene38242:CDS |
| CTTAAAACATACCACAAAGA+TGG | 0.460266 | 5.3:-78243026 | None:intergenic |
| CTGAAATCTCCTTCCAAAAG+AGG | 0.460283 | 5.3:-78234300 | None:intergenic |
| AGATGCCAGATATGTTGAAC+TGG | 0.461398 | 5.3:+78240925 | MS.gene38242:intron |
| ATGTGAATTGTGTGAGATGC+AGG | 0.463395 | 5.3:-78242126 | None:intergenic |
| GGTGTTAAACCTGGGATTAG+TGG | 0.464175 | 5.3:+78241603 | MS.gene38242:CDS |
| GGTTGGTTGGACTTGACTCC+AGG | 0.465627 | 5.3:-78241669 | None:intergenic |
| TGTTGCTGATGGAAACTTGA+TGG | 0.470783 | 5.3:+78233595 | MS.gene38242:CDS |
| ATGTTTCCATTCAACACCAT+TGG | 0.474051 | 5.3:-78241193 | None:intergenic |
| CTTATCCACGACGAGAATCC+AGG | 0.474066 | 5.3:+78242913 | MS.gene38242:CDS |
| AGTCGCAGAGTCTTTCCTAT+TGG | 0.476411 | 5.3:+78233731 | MS.gene38242:CDS |
| TTCAGTTACGAGGAAGAATC+GGG | 0.479971 | 5.3:+78243414 | MS.gene38242:CDS |
| ATGATGTCAGTGACTGTGCC+TGG | 0.481533 | 5.3:-78242931 | None:intergenic |
| CCATCAAATTCCTCCACATC+AGG | 0.481977 | 5.3:-78240436 | None:intergenic |
| ACAATACAGACGGATTGTAT+AGG | 0.482731 | 5.3:+78241952 | MS.gene38242:CDS |
| ACATGAAACATATCCCAATC+TGG | 0.482945 | 5.3:-78242195 | None:intergenic |
| ATGGTATCTAATGCTTCATC+TGG | 0.485206 | 5.3:-78241690 | None:intergenic |
| ACATACTCAAGCTTGCCAAT+AGG | 0.485952 | 5.3:-78233746 | None:intergenic |
| GGAGCTGGTTGGTGCAAAGT+TGG | 0.487373 | 5.3:+78242880 | MS.gene38242:CDS |
| ATCAGAAAATAAGCAATCCT+TGG | 0.487411 | 5.3:-78242683 | None:intergenic |
| CATGCTGCTGCAAGAGCAGT+TGG | 0.488415 | 5.3:+78242339 | MS.gene38242:CDS |
| GAGGATGTCCTATTTATGTC+AGG | 0.491039 | 5.3:+78242361 | MS.gene38242:CDS |
| TTTCAAGGAAAGATGACTGT+AGG | 0.497121 | 5.3:+78233560 | None:intergenic |
| AGATTGAAGTCGTGGTGTCC+GGG | 0.497726 | 5.3:-78242598 | None:intergenic |
| CCTGATGTGGAGGAATTTGA+TGG | 0.498094 | 5.3:+78240436 | MS.gene38242:CDS |
| TATCTAATGCTTCATCTGGT+TGG | 0.499999 | 5.3:-78241686 | None:intergenic |
| CATTGGAGGCATCGATCTCT+AGG | 0.501698 | 5.3:+78241892 | MS.gene38242:CDS |
| AAGTTTGTCATAATTGATGA+TGG | 0.501793 | 5.3:+78241147 | MS.gene38242:CDS |
| TCTAGGAACTTTCCTGATAA+CGG | 0.503841 | 5.3:+78241909 | MS.gene38242:CDS |
| ATCCTTGAAACTCTTGGAGC+AGG | 0.507848 | 5.3:+78241828 | MS.gene38242:CDS |
| CCGCGTAGGTAGAACCATCT+TGG | 0.508362 | 5.3:-78234269 | None:intergenic |
| CCATTTGGTAATTCCGTCAC+AGG | 0.508864 | 5.3:-78243210 | None:intergenic |
| ACTGGTTTGGATGGTGTACA+TGG | 0.510270 | 5.3:+78240943 | MS.gene38242:CDS |
| TTCAAGGAAAGATGACTGTA+GGG | 0.510895 | 5.3:+78233561 | None:intergenic |
| GACTCATTTGGTGTTTATTG+GGG | 0.511611 | 5.3:+78240459 | MS.gene38242:CDS |
| GTGTGAGATGCAGGGTCTCT+TGG | 0.512827 | 5.3:-78242117 | None:intergenic |
| GAATCAGCAGTAATCAACTT+TGG | 0.513800 | 5.3:-78243378 | None:intergenic |
| GCTCTTAATATAGAACCGTC+AGG | 0.513998 | 5.3:-78242640 | None:intergenic |
| ATCAAAGAACCACCAGAAGC+AGG | 0.518612 | 5.3:-78233668 | None:intergenic |
| ATATGATGAATTCCCATGGC+AGG | 0.519402 | 5.3:-78241415 | None:intergenic |
| ACTTGCAAGGAAATATCATC+AGG | 0.521049 | 5.3:+78241869 | MS.gene38242:CDS |
| TTCCAGAAAGACGGCAAGGA+AGG | 0.521640 | 5.3:+78241376 | MS.gene38242:CDS |
| TCAATTATGACAAACTTAGC+AGG | 0.522019 | 5.3:-78241141 | None:intergenic |
| ACAAAGATGGGAAAATATGA+TGG | 0.522183 | 5.3:-78243013 | None:intergenic |
| ACCATTGCAATTAATGGACT+CGG | 0.524368 | 5.3:+78241708 | MS.gene38242:CDS |
| GTATTCAATTGTCAAGGAGC+TGG | 0.525702 | 5.3:+78242865 | MS.gene38242:CDS |
| CTTGTTACTCCTGCTTCTGG+TGG | 0.525865 | 5.3:+78233659 | MS.gene38242:CDS |
| CTGATGAATAAGCACCGAAA+AGG | 0.528725 | 5.3:-78243350 | None:intergenic |
| GAAAATAAGCAATCCTTGGT+TGG | 0.534266 | 5.3:-78242679 | None:intergenic |
| TTAAAACATACCACAAAGAT+GGG | 0.534469 | 5.3:-78243025 | None:intergenic |
| TTGTCATCGCGAGAGAAAGA+AGG | 0.535948 | 5.3:+78240795 | MS.gene38242:CDS |
| ATGGAAACTTGATGGTGTTA+GGG | 0.536276 | 5.3:+78233603 | MS.gene38242:CDS |
| TATTGGGGTGGTGTTAAACC+TGG | 0.537243 | 5.3:+78241594 | MS.gene38242:CDS |
| GATTACTGCTGATTCGGAAG+AGG | 0.537885 | 5.3:+78243386 | MS.gene38242:CDS |
| CACTCATATCTAGCATCCGC+TGG | 0.540430 | 5.3:+78241774 | MS.gene38242:CDS |
| ATCAAGATGTTCAATTCAGG+AGG | 0.543626 | 5.3:+78243258 | MS.gene38242:CDS |
| CAAGGAAGGTCATCGGATAG+AGG | 0.543698 | 5.3:+78241390 | MS.gene38242:CDS |
| ATTTCAGGTCTGTTCTTCAA+GGG | 0.543811 | 5.3:+78234316 | MS.gene38242:CDS |
| TGTTCCATGCCACTAATCCC+AGG | 0.544946 | 5.3:-78241612 | None:intergenic |
| TACTGCTGATTCGGAAGAGG+TGG | 0.546336 | 5.3:+78243389 | MS.gene38242:CDS |
| CACATTCTCTGAAGTGACGT+TGG | 0.546510 | 5.3:-78240979 | None:intergenic |
| GTCCTGCTCCAAGAGTTTCA+AGG | 0.548641 | 5.3:-78241830 | None:intergenic |
| GAAACTCTTGGAGCAGGACA+TGG | 0.552642 | 5.3:+78241834 | MS.gene38242:CDS |
| TTGCTTATTGAAGCACATAA+GGG | 0.552730 | 5.3:+78234207 | MS.gene38242:CDS |
| GTGGCAGATGATAAATGGAC+AGG | 0.554459 | 5.3:+78242985 | MS.gene38242:CDS |
| TCGGATAGAGGACCCTGCCA+TGG | 0.557137 | 5.3:+78241402 | MS.gene38242:CDS |
| TGGAGCAGGACATGGTGGGA+GGG | 0.557166 | 5.3:+78241842 | MS.gene38242:CDS |
| TGGACCCCAATGGTGTTGAA+TGG | 0.557644 | 5.3:+78241187 | MS.gene38242:CDS |
| GGTGTTTCTTCTGATCAAAA+GGG | 0.558333 | 5.3:+78233707 | MS.gene38242:CDS |
| GAAATATCATCAGGCATTGG+AGG | 0.559741 | 5.3:+78241878 | MS.gene38242:CDS |
| GGAAAGATGACTGTAGGGGC+AGG | 0.561229 | 5.3:+78233566 | None:intergenic |
| CGGATAGAGGACCCTGCCAT+GGG | 0.562030 | 5.3:+78241403 | MS.gene38242:CDS |
| TTGGAGCAGGACATGGTGGG+AGG | 0.562696 | 5.3:+78241841 | MS.gene38242:CDS |
| GTGGTGGATGACTCAGAGAA+TGG | 0.563083 | 5.3:+78234146 | MS.gene38242:CDS |
| GCCGAGTCCATTAATTGCAA+TGG | 0.564685 | 5.3:-78241709 | None:intergenic |
| ACTTCAGAGAATGTGAAAGA+AGG | 0.566901 | 5.3:+78240987 | MS.gene38242:CDS |
| GCAGGAATATCTGTTGCTGA+TGG | 0.567325 | 5.3:+78233584 | MS.gene38242:CDS |
| AAGAAGCTTGTACTTCCTGA+CGG | 0.570895 | 5.3:+78242625 | MS.gene38242:CDS |
| GTTGGGGTATTCAATTGTCA+AGG | 0.578349 | 5.3:+78242859 | MS.gene38242:CDS |
| TGACTCCAGGAGATGAGATA+GGG | 0.578809 | 5.3:-78241656 | None:intergenic |
| TTTATAGGCATGTGTATGTG+TGG | 0.579591 | 5.3:+78241556 | MS.gene38242:intron |
| GGAACATTATGAGTCAAAGA+TGG | 0.580896 | 5.3:+78241629 | MS.gene38242:CDS |
| CCTGTGACGGAATTACCAAA+TGG | 0.582381 | 5.3:+78243210 | MS.gene38242:CDS |
| ATTTCAGAGTCTTCATCCGA+TGG | 0.583061 | 5.3:+78242308 | MS.gene38242:intron |
| ATATGTTGAACTGGTTTGGA+TGG | 0.583851 | 5.3:+78240934 | MS.gene38242:CDS |
| ATTGAGATTTGTGTCGAAAG+TGG | 0.584978 | 5.3:+78234354 | MS.gene38242:CDS |
| TTACGAGGAAGAATCGGGAT+TGG | 0.588683 | 5.3:+78243419 | MS.gene38242:CDS |
| TTGTCATAATTGATGATGGA+TGG | 0.588951 | 5.3:+78241151 | MS.gene38242:CDS |
| GCAGCATGATATTCAGCCAT+CGG | 0.591613 | 5.3:-78242324 | None:intergenic |
| GACTATCAATTTGAGTGTGC+CGG | 0.594245 | 5.3:+78243443 | MS.gene38242:CDS |
| CATAAGGGTCGTGATATTGA+CGG | 0.598066 | 5.3:+78234222 | MS.gene38242:CDS |
| TCTTCAAAAGATTGAAGTCG+TGG | 0.598479 | 5.3:-78242606 | None:intergenic |
| ATGTTTCCATGAAAGTGCGC+GGG | 0.602450 | 5.3:+78243322 | MS.gene38242:CDS |
| TCAATTGTCAAGGAGCTGGT+TGG | 0.603577 | 5.3:+78242869 | MS.gene38242:CDS |
| AATCACAAATTCCAGAAAGA+CGG | 0.606328 | 5.3:+78241367 | MS.gene38242:CDS |
| TCACACAATTCACATTGCAT+CGG | 0.606593 | 5.3:+78242134 | MS.gene38242:CDS |
| TAAACCTGGGATTAGTGGCA+TGG | 0.606597 | 5.3:+78241608 | MS.gene38242:CDS |
| CGGAGAAAGAGTTATATCAA+AGG | 0.607877 | 5.3:+78243463 | MS.gene38242:CDS |
| TGACTATTCTGGAGTTGTTG+GGG | 0.608376 | 5.3:+78242843 | MS.gene38242:CDS |
| CTGTGCCTGGATTCTCGTCG+TGG | 0.608941 | 5.3:-78242918 | None:intergenic |
| ATCCTGCTAGAGATGGAAAG+AGG | 0.609009 | 5.3:+78242704 | MS.gene38242:CDS |
| GGTAATATGATGAATTCCCA+TGG | 0.612655 | 5.3:-78241419 | None:intergenic |
| ATTGGGGTGGTGTTAAACCT+GGG | 0.617867 | 5.3:+78241595 | MS.gene38242:CDS |
| TGCATGAGTCACAATACAGA+CGG | 0.618170 | 5.3:+78241942 | MS.gene38242:CDS |
| TCAAGATGTTCAATTCAGGA+GGG | 0.618888 | 5.3:+78243259 | MS.gene38242:CDS |
| ACTCTTGGAGCAGGACATGG+TGG | 0.623127 | 5.3:+78241837 | MS.gene38242:CDS |
| GCTGCTGCAAGAGCAGTTGG+AGG | 0.623143 | 5.3:+78242342 | MS.gene38242:CDS |
| TGGTGGATGACTCAGAGAAT+GGG | 0.624213 | 5.3:+78234147 | MS.gene38242:CDS |
| CAAGATGTTCAATTCAGGAG+GGG | 0.626666 | 5.3:+78243260 | MS.gene38242:CDS |
| TGAATTAGTCTATCTTCCAA+AGG | 0.628210 | 5.3:+78243131 | MS.gene38242:CDS |
| TCTGTTAGCATGGACCCCAA+TGG | 0.628808 | 5.3:+78241177 | MS.gene38242:CDS |
| TGGATGGCAATCTGTTAGCA+TGG | 0.629189 | 5.3:+78241167 | MS.gene38242:CDS |
| AGGGTCGTGATATTGACGGA+GGG | 0.630237 | 5.3:+78234226 | MS.gene38242:CDS |
| AAGACGGCAAGGAAGGTCAT+CGG | 0.630476 | 5.3:+78241383 | MS.gene38242:CDS |
| TATGATGAATTCCCATGGCA+GGG | 0.631193 | 5.3:-78241414 | None:intergenic |
| CTCTTGGAGCAGGACATGGT+GGG | 0.631869 | 5.3:+78241838 | MS.gene38242:CDS |
| AAGGAAATATCATCAGGCAT+TGG | 0.632296 | 5.3:+78241875 | MS.gene38242:CDS |
| GTGGGAGGGTGAAACTTGCA+AGG | 0.634046 | 5.3:+78241856 | MS.gene38242:CDS |
| GTTTCCATTCAACACCATTG+GGG | 0.635207 | 5.3:-78241191 | None:intergenic |
| ATGTTGTGTAGCGACAAGCC+CGG | 0.639558 | 5.3:+78242580 | MS.gene38242:intron |
| CAGCGGATGCTAGATATGAG+TGG | 0.644150 | 5.3:-78241773 | None:intergenic |
| CTGATGTGGAGGAATTTGAT+GGG | 0.644921 | 5.3:+78240437 | MS.gene38242:CDS |
| ATGTGAAAGAAGGATTACAA+AGG | 0.646563 | 5.3:+78240997 | MS.gene38242:CDS |
| AAACTTTCTCAGGATTCACA+AGG | 0.647279 | 5.3:-78241731 | None:intergenic |
| CATTTGGTAATTCCGTCACA+GGG | 0.654139 | 5.3:-78243209 | None:intergenic |
| ATTGACGGAGGGGTTGACAG+TGG | 0.659836 | 5.3:+78234237 | MS.gene38242:CDS |
| TCAAGGAAAGATGACTGTAG+GGG | 0.662013 | 5.3:+78233562 | None:intergenic |
| AGTGGAGAAGAAGACCAAGA+TGG | 0.664699 | 5.3:+78234255 | MS.gene38242:CDS |
| ACTCAGAGAATGGGTAACTG+TGG | 0.666426 | 5.3:+78234156 | MS.gene38242:CDS |
| GATTGTAGGATGTCCTGATG+TGG | 0.668084 | 5.3:+78240423 | MS.gene38242:intron |
| CACGCAATAACAGGATATTG+GGG | 0.669516 | 5.3:+78241579 | MS.gene38242:CDS |
| CAAATTCCAGAAAGACGGCA+AGG | 0.669689 | 5.3:+78241372 | MS.gene38242:CDS |
| AAGAGGTAACAAAACCGCGT+AGG | 0.674435 | 5.3:-78234283 | None:intergenic |
| GGGTCGTGATATTGACGGAG+GGG | 0.674757 | 5.3:+78234227 | MS.gene38242:CDS |
| CCAAGATGGTTCTACCTACG+CGG | 0.679355 | 5.3:+78234269 | MS.gene38242:CDS |
| ACTTCCAGGAAGACCAACCA+AGG | 0.682213 | 5.3:+78242666 | MS.gene38242:CDS |
| CTGGTTTGGATGGTGTACAT+GGG | 0.686671 | 5.3:+78240944 | MS.gene38242:CDS |
| TGTAGGATGTCCTGATGTGG+AGG | 0.686980 | 5.3:+78240426 | MS.gene38242:intron |
| AAGGGTCGTGATATTGACGG+AGG | 0.687446 | 5.3:+78234225 | MS.gene38242:CDS |
| TGTGAATTGTGTGAGATGCA+GGG | 0.690378 | 5.3:-78242125 | None:intergenic |
| AATGTTTCCATGAAAGTGCG+CGG | 0.690958 | 5.3:+78243321 | MS.gene38242:CDS |
| TATCGACCATTTATCGACAG+TGG | 0.693571 | 5.3:+78242966 | MS.gene38242:CDS |
| CTGGCTGCATAAATTCACCA+AGG | 0.700322 | 5.3:-78242176 | None:intergenic |
| GCAATAACAGGATATTGGGG+TGG | 0.700706 | 5.3:+78241582 | MS.gene38242:CDS |
| AGAGGTGGAATTCAGTTACG+AGG | 0.721190 | 5.3:+78243404 | MS.gene38242:CDS |
| TTTGACACCATCAATACCAG+CGG | 0.721207 | 5.3:-78241790 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 78233572 | 78243506 | 78233572 | ID=MS.gene38242 |
| chr5.3 | mRNA | 78233572 | 78243506 | 78233572 | ID=MS.gene38242.t1;Parent=MS.gene38242 |
| chr5.3 | exon | 78233572 | 78233762 | 78233572 | ID=MS.gene38242.t1.exon1;Parent=MS.gene38242.t1 |
| chr5.3 | CDS | 78233572 | 78233762 | 78233572 | ID=cds.MS.gene38242.t1;Parent=MS.gene38242.t1 |
| chr5.3 | exon | 78234110 | 78234375 | 78234110 | ID=MS.gene38242.t1.exon2;Parent=MS.gene38242.t1 |
| chr5.3 | CDS | 78234110 | 78234375 | 78234110 | ID=cds.MS.gene38242.t1;Parent=MS.gene38242.t1 |
| chr5.3 | exon | 78240431 | 78240521 | 78240431 | ID=MS.gene38242.t1.exon3;Parent=MS.gene38242.t1 |
| chr5.3 | CDS | 78240431 | 78240521 | 78240431 | ID=cds.MS.gene38242.t1;Parent=MS.gene38242.t1 |
| chr5.3 | exon | 78240768 | 78240816 | 78240768 | ID=MS.gene38242.t1.exon4;Parent=MS.gene38242.t1 |
| chr5.3 | CDS | 78240768 | 78240816 | 78240768 | ID=cds.MS.gene38242.t1;Parent=MS.gene38242.t1 |
| chr5.3 | exon | 78240927 | 78241018 | 78240927 | ID=MS.gene38242.t1.exon5;Parent=MS.gene38242.t1 |
| chr5.3 | CDS | 78240927 | 78241018 | 78240927 | ID=cds.MS.gene38242.t1;Parent=MS.gene38242.t1 |
| chr5.3 | exon | 78241122 | 78241229 | 78241122 | ID=MS.gene38242.t1.exon6;Parent=MS.gene38242.t1 |
| chr5.3 | CDS | 78241122 | 78241229 | 78241122 | ID=cds.MS.gene38242.t1;Parent=MS.gene38242.t1 |
| chr5.3 | exon | 78241336 | 78241470 | 78241336 | ID=MS.gene38242.t1.exon7;Parent=MS.gene38242.t1 |
| chr5.3 | CDS | 78241336 | 78241470 | 78241336 | ID=cds.MS.gene38242.t1;Parent=MS.gene38242.t1 |
| chr5.3 | exon | 78241563 | 78241973 | 78241563 | ID=MS.gene38242.t1.exon8;Parent=MS.gene38242.t1 |
| chr5.3 | CDS | 78241563 | 78241973 | 78241563 | ID=cds.MS.gene38242.t1;Parent=MS.gene38242.t1 |
| chr5.3 | exon | 78242074 | 78242215 | 78242074 | ID=MS.gene38242.t1.exon9;Parent=MS.gene38242.t1 |
| chr5.3 | CDS | 78242074 | 78242215 | 78242074 | ID=cds.MS.gene38242.t1;Parent=MS.gene38242.t1 |
| chr5.3 | exon | 78242315 | 78242382 | 78242315 | ID=MS.gene38242.t1.exon10;Parent=MS.gene38242.t1 |
| chr5.3 | CDS | 78242315 | 78242382 | 78242315 | ID=cds.MS.gene38242.t1;Parent=MS.gene38242.t1 |
| chr5.3 | exon | 78242591 | 78242725 | 78242591 | ID=MS.gene38242.t1.exon11;Parent=MS.gene38242.t1 |
| chr5.3 | CDS | 78242591 | 78242725 | 78242591 | ID=cds.MS.gene38242.t1;Parent=MS.gene38242.t1 |
| chr5.3 | exon | 78242819 | 78243036 | 78242819 | ID=MS.gene38242.t1.exon12;Parent=MS.gene38242.t1 |
| chr5.3 | CDS | 78242819 | 78243036 | 78242819 | ID=cds.MS.gene38242.t1;Parent=MS.gene38242.t1 |
| chr5.3 | exon | 78243130 | 78243506 | 78243130 | ID=MS.gene38242.t1.exon13;Parent=MS.gene38242.t1 |
| chr5.3 | CDS | 78243130 | 78243506 | 78243130 | ID=cds.MS.gene38242.t1;Parent=MS.gene38242.t1 |
| Gene Sequence |
| Protein sequence |
