Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38389.t1 | XP_024635249.1 | 84.8 | 499 | 49 | 3 | 1 | 473 | 1 | 498 | 3.10E-237 | 830.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38389.t1 | Q4F883 | 34.9 | 484 | 255 | 17 | 10 | 467 | 9 | 458 | 5.1e-63 | 243.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38389.t1 | A0A072V8I6 | 84.3 | 502 | 49 | 3 | 1 | 473 | 1 | 501 | 5.0e-237 | 829.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050645 | MS.gene38389 | 0.804687 | 1.92E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38389.t1 | MTR_3g467360 | 84.263 | 502 | 49 | 3 | 1 | 473 | 1 | 501 | 0.0 | 858 |
| MS.gene38389.t1 | MTR_3g467360 | 84.073 | 496 | 49 | 3 | 7 | 473 | 13 | 507 | 0.0 | 846 |
| MS.gene38389.t1 | MTR_6g007975 | 62.624 | 503 | 148 | 9 | 5 | 473 | 7 | 503 | 0.0 | 594 |
| MS.gene38389.t1 | MTR_6g008015 | 59.406 | 505 | 162 | 9 | 5 | 473 | 7 | 504 | 0.0 | 563 |
| MS.gene38389.t1 | MTR_6g008055 | 57.364 | 516 | 162 | 12 | 1 | 473 | 1 | 501 | 0.0 | 535 |
| MS.gene38389.t1 | MTR_3g467350 | 62.410 | 415 | 90 | 6 | 1 | 376 | 1 | 388 | 1.89e-172 | 494 |
| MS.gene38389.t1 | MTR_6g007980 | 54.400 | 500 | 187 | 9 | 1 | 467 | 1 | 492 | 2.73e-172 | 497 |
| MS.gene38389.t1 | MTR_6g007980 | 54.291 | 501 | 187 | 9 | 1 | 467 | 1 | 493 | 5.42e-172 | 496 |
| MS.gene38389.t1 | MTR_6g007980 | 54.183 | 502 | 187 | 9 | 1 | 467 | 1 | 494 | 7.93e-172 | 496 |
| MS.gene38389.t1 | MTR_6g007985 | 59.791 | 383 | 121 | 5 | 116 | 471 | 49 | 425 | 1.88e-154 | 449 |
| MS.gene38389.t1 | MTR_0286s0040 | 49.482 | 386 | 93 | 8 | 116 | 473 | 2 | 313 | 1.32e-109 | 330 |
| MS.gene38389.t1 | MTR_0286s0050 | 58.678 | 121 | 40 | 4 | 5 | 116 | 7 | 126 | 9.12e-32 | 120 |
| MS.gene38389.t1 | MTR_3g079340 | 26.014 | 296 | 161 | 12 | 205 | 464 | 277 | 550 | 1.04e-15 | 80.1 |
| MS.gene38389.t1 | MTR_3g078633 | 25.559 | 313 | 146 | 15 | 205 | 464 | 276 | 554 | 2.76e-14 | 75.9 |
| MS.gene38389.t1 | MTR_3g078633 | 25.559 | 313 | 146 | 15 | 205 | 464 | 204 | 482 | 3.96e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38389.t1 | AT5G14930 | 34.331 | 501 | 262 | 17 | 10 | 480 | 9 | 472 | 1.20e-75 | 247 |
| MS.gene38389.t1 | AT5G14930 | 36.726 | 226 | 118 | 7 | 10 | 219 | 9 | 225 | 1.46e-31 | 122 |
| MS.gene38389.t1 | AT3G52430 | 24.444 | 360 | 234 | 9 | 126 | 460 | 112 | 458 | 1.14e-27 | 116 |
Find 88 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATGTCATTCAATTTCT+TGG | 0.175279 | 3.4:+64287892 | None:intergenic |
| ACCACCTTCACTATAGTATT+TGG | 0.184967 | 3.4:+64287616 | None:intergenic |
| CCATATCACGTAGTTCTATT+TGG | 0.224477 | 3.4:-64288625 | MS.gene38389:CDS |
| TGACTATAGATTCTTGCTTT+TGG | 0.226808 | 3.4:-64287466 | MS.gene38389:CDS |
| CAGACTCCATTGATTGTTAC+TGG | 0.274178 | 3.4:-64288779 | MS.gene38389:CDS |
| TTCCAGTGTTCAAGCTGATT+TGG | 0.274780 | 3.4:-64290196 | MS.gene38389:CDS |
| GAACTCGAATCTGTTGATTA+TGG | 0.275822 | 3.4:-64288416 | MS.gene38389:CDS |
| ACAGTTGGAGGAGTGGTTAT+TGG | 0.276000 | 3.4:-64287555 | MS.gene38389:CDS |
| AAAGAAATTGTTAGAATTTG+AGG | 0.296622 | 3.4:-64287377 | None:intergenic |
| TGGAAATTTGATAAAGAAAC+TGG | 0.298464 | 3.4:-64290252 | MS.gene38389:CDS |
| ACCAGTACCTACATGCCTTT+TGG | 0.310304 | 3.4:-64288536 | MS.gene38389:CDS |
| CTGATATTAGTTTGCAGTTA+GGG | 0.318624 | 3.4:-64288304 | MS.gene38389:CDS |
| ATATCAGTTGCTAGTGAATC+TGG | 0.321829 | 3.4:+64288320 | None:intergenic |
| TTTCGTACCCGTTGGTTATA+TGG | 0.328618 | 3.4:-64287680 | MS.gene38389:CDS |
| CGCCCGCTCTGCATTACCTT+TGG | 0.333826 | 3.4:-64288683 | MS.gene38389:CDS |
| AAAATTTCAAAGATAGAATC+TGG | 0.334535 | 3.4:+64288473 | None:intergenic |
| CCAAATAGAACTACGTGATA+TGG | 0.336582 | 3.4:+64288625 | None:intergenic |
| GGTTTCTTCTGCTGAACTTA+AGG | 0.337315 | 3.4:-64290175 | MS.gene38389:CDS |
| TATTCACCTACCTTCATATA+TGG | 0.354625 | 3.4:+64288266 | None:intergenic |
| AAAGCTGAACCTTCTCTTTG+TGG | 0.372221 | 3.4:+64287701 | None:intergenic |
| ACTGATATTAGTTTGCAGTT+AGG | 0.380142 | 3.4:-64288305 | MS.gene38389:CDS |
| AAGATGGTGTTGGACTTTCT+TGG | 0.386462 | 3.4:-64290272 | MS.gene38389:CDS |
| ACCTTTGGTTCACCCCTTGT+TGG | 0.402209 | 3.4:-64288668 | MS.gene38389:CDS |
| CCACCATCCTTTGCAAATCA+TGG | 0.413072 | 3.4:-64290320 | MS.gene38389:CDS |
| ATGTCATTCAATTTCTTGGA+TGG | 0.433231 | 3.4:+64287896 | None:intergenic |
| CCAACAGCATCATGGTCAAT+TGG | 0.440770 | 3.4:+64287782 | None:intergenic |
| AAAATCACCAGGAGCTTGAT+AGG | 0.441346 | 3.4:-64290065 | MS.gene38389:CDS |
| GTCCGATCATTTCAAACAGT+TGG | 0.446282 | 3.4:-64287570 | MS.gene38389:CDS |
| TCATCTGATAATTATGAAGA+TGG | 0.446459 | 3.4:-64290288 | MS.gene38389:CDS |
| GAATGACATGAAGGTACATA+TGG | 0.447625 | 3.4:-64287882 | MS.gene38389:CDS |
| GTTCACCCCTTGTTGGTGAC+AGG | 0.448574 | 3.4:-64288661 | MS.gene38389:CDS |
| CACGATTTACTGGGAAAAGA+TGG | 0.470346 | 3.4:-64287744 | MS.gene38389:CDS |
| AAGACTATGTTAATAACAAA+TGG | 0.476833 | 3.4:-64287592 | MS.gene38389:CDS |
| AGAAGCCTTAAAAGCTAGAA+TGG | 0.491774 | 3.4:+64290218 | None:intergenic |
| CCATTGATTGTTACTGGACA+TGG | 0.493087 | 3.4:-64288773 | MS.gene38389:CDS |
| CCATGTCCAGTAACAATCAA+TGG | 0.494003 | 3.4:+64288773 | None:intergenic |
| AACCAAATCAGCTTGAACAC+TGG | 0.498868 | 3.4:+64290194 | None:intergenic |
| ATTGTTACTGGACATGGCCT+CGG | 0.505250 | 3.4:-64288767 | MS.gene38389:CDS |
| AAAACTAAGAATGAAAATGC+AGG | 0.513971 | 3.4:-64287836 | MS.gene38389:CDS |
| TACATATGGCCCAACTTGAA+TGG | 0.515555 | 3.4:-64287868 | MS.gene38389:CDS |
| CGATCATTTCAAACAGTTGG+AGG | 0.516765 | 3.4:-64287567 | MS.gene38389:CDS |
| TCCAAAAGGCATGTAGGTAC+TGG | 0.521347 | 3.4:+64288535 | None:intergenic |
| GATAATTATGAAGATGGTGT+TGG | 0.522657 | 3.4:-64290282 | MS.gene38389:CDS |
| ATATCACTATTACATAGCAT+TGG | 0.523245 | 3.4:-64288719 | MS.gene38389:CDS |
| AACCAAAGGTAATGCAGAGC+GGG | 0.525547 | 3.4:+64288681 | None:intergenic |
| ACTCTTTCGCGAAAATCACC+AGG | 0.525563 | 3.4:-64290076 | MS.gene38389:CDS |
| CGTACCCGTTGGTTATATGG+AGG | 0.529527 | 3.4:-64287677 | MS.gene38389:CDS |
| CAGCATCATGGTCAATTGGT+TGG | 0.530941 | 3.4:+64287786 | None:intergenic |
| CAATTGACCATGATGCTGTT+GGG | 0.534264 | 3.4:-64287781 | MS.gene38389:CDS |
| CACAGGATGAATGTTCCAAA+AGG | 0.534955 | 3.4:+64288521 | None:intergenic |
| TATGGAACCCAACAGCATCA+TGG | 0.536170 | 3.4:+64287774 | None:intergenic |
| CAATTTCCTGTCACCAACAA+GGG | 0.536290 | 3.4:+64288655 | None:intergenic |
| TTCTTCTGCTGAACTTAAGG+AGG | 0.536537 | 3.4:-64290172 | MS.gene38389:CDS |
| CTCCAACTGTTTGAAATGAT+CGG | 0.540425 | 3.4:+64287568 | None:intergenic |
| CAAGAAATTGAATGACATGA+AGG | 0.541822 | 3.4:-64287891 | MS.gene38389:CDS |
| AGTCCCTCCATATAACCAAC+GGG | 0.547594 | 3.4:+64287673 | None:intergenic |
| GCAATTTCCTGTCACCAACA+AGG | 0.547893 | 3.4:+64288654 | None:intergenic |
| CGATCTGTAATGAAGAGCCT+TGG | 0.549347 | 3.4:+64288560 | None:intergenic |
| GCCAAATACTATAGTGAAGG+TGG | 0.562312 | 3.4:-64287617 | MS.gene38389:CDS |
| CTATCCATGTTGCTTTACCA+TGG | 0.563422 | 3.4:+64288375 | None:intergenic |
| ATTTCAAACAGTTGGAGGAG+TGG | 0.563978 | 3.4:-64287562 | MS.gene38389:CDS |
| CCATGATTTGCAAAGGATGG+TGG | 0.572173 | 3.4:+64290320 | None:intergenic |
| CCAATTGACCATGATGCTGT+TGG | 0.574111 | 3.4:-64287782 | MS.gene38389:CDS |
| GTAATGAAGAGCCTTGGAAG+TGG | 0.574422 | 3.4:+64288566 | None:intergenic |
| ACCAACAAGGGGTGAACCAA+AGG | 0.576532 | 3.4:+64288667 | None:intergenic |
| AGGGACTACTTACAGAAGAA+TGG | 0.577212 | 3.4:-64287657 | MS.gene38389:CDS |
| GTACCCGTTGGTTATATGGA+GGG | 0.577415 | 3.4:-64287676 | MS.gene38389:CDS |
| AAGTTTGACACCATATATGA+AGG | 0.582254 | 3.4:-64288276 | MS.gene38389:intron |
| ATCTCCATGGTAAAGCAACA+TGG | 0.588280 | 3.4:-64288379 | MS.gene38389:CDS |
| AGTCCATGATTTGCAAAGGA+TGG | 0.589663 | 3.4:+64290317 | None:intergenic |
| GAATGTTCCAAAAGGCATGT+AGG | 0.591885 | 3.4:+64288529 | None:intergenic |
| TGATATTAGTTTGCAGTTAG+GGG | 0.592603 | 3.4:-64288303 | MS.gene38389:CDS |
| CACACAAAGACCCACTTCCA+AGG | 0.594406 | 3.4:-64288577 | MS.gene38389:CDS |
| GTAACAATCAATGGAGTCTG+TGG | 0.595066 | 3.4:+64288782 | None:intergenic |
| TAGTATTTGGCAATAGCTAG+TGG | 0.602435 | 3.4:+64287629 | None:intergenic |
| TAGTACACATAGCAAGAATG+TGG | 0.602705 | 3.4:-64287498 | MS.gene38389:CDS |
| GAGATGAAGCCACAAAGAGA+AGG | 0.605391 | 3.4:-64287710 | MS.gene38389:CDS |
| TAGTAGTCCATGATTTGCAA+AGG | 0.607664 | 3.4:+64290313 | None:intergenic |
| AAACTAAGAATGAAAATGCA+GGG | 0.608258 | 3.4:-64287835 | MS.gene38389:CDS |
| TAGTCCCTCCATATAACCAA+CGG | 0.612991 | 3.4:+64287672 | None:intergenic |
| ATTGCCAAATACTATAGTGA+AGG | 0.613573 | 3.4:-64287620 | MS.gene38389:CDS |
| AAGAAGTTGCATCAGAACAC+AGG | 0.614949 | 3.4:+64288504 | None:intergenic |
| TAATGAAGAGCCTTGGAAGT+GGG | 0.621720 | 3.4:+64288567 | None:intergenic |
| AATTTCCTGTCACCAACAAG+GGG | 0.653500 | 3.4:+64288656 | None:intergenic |
| GTTACTGGACATGGCCTCGG+AGG | 0.668073 | 3.4:-64288764 | MS.gene38389:CDS |
| GCTTGATAGGTTGAAAACTG+AGG | 0.693692 | 3.4:-64290052 | MS.gene38389:intron |
| GAGAAGCAATTGATCCTCCG+AGG | 0.698135 | 3.4:+64288750 | None:intergenic |
| GAACCAAAGGTAATGCAGAG+CGG | 0.710727 | 3.4:+64288680 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAATCAAGTAAA+TGG | - | chr3.4:64288365-64288384 | MS.gene38389:CDS | 10.0% |
| !! | AAAAATAAAATCAAGTAAAT+GGG | - | chr3.4:64288366-64288385 | MS.gene38389:CDS | 10.0% |
| !!! | AAGAATTTTTAAAATAATCA+CGG | + | chr3.4:64288972-64288991 | None:intergenic | 10.0% |
| !! | AATCAGAAAAATAATCAAAA+AGG | + | chr3.4:64287880-64287899 | None:intergenic | 15.0% |
| !! | AATTATTTAACCTTTCTATT+TGG | - | chr3.4:64287926-64287945 | MS.gene38389:intron | 15.0% |
| !! | GTTAATTTCATTTATATATG+AGG | + | chr3.4:64287484-64287503 | None:intergenic | 15.0% |
| !! | TAAATGAAATTATAAAGCTA+AGG | + | chr3.4:64288346-64288365 | None:intergenic | 15.0% |
| !!! | GTTTTATTAAATGAGAAAAT+TGG | + | chr3.4:64287785-64287804 | None:intergenic | 15.0% |
| !! | AAAAATAATCAAAAAGGTCA+AGG | + | chr3.4:64287874-64287893 | None:intergenic | 20.0% |
| !! | AAAATTTCAAAGATAGAATC+TGG | + | chr3.4:64289420-64289439 | None:intergenic | 20.0% |
| !! | AACACCATTCTTAAAATATA+AGG | + | chr3.4:64288585-64288604 | None:intergenic | 20.0% |
| !! | AAGACTATGTTAATAACAAA+TGG | - | chr3.4:64290298-64290317 | MS.gene38389:CDS | 20.0% |
| !! | AATATAGTAAAAAATCTCCA+TGG | - | chr3.4:64289498-64289517 | MS.gene38389:intron | 20.0% |
| !! | ACAAGTAAATGTTAGAAATA+AGG | + | chr3.4:64289949-64289968 | None:intergenic | 20.0% |
| !! | AGTGTATTATAAAAAAAGAG+AGG | - | chr3.4:64289846-64289865 | MS.gene38389:intron | 20.0% |
| !!! | TAAAGTTTTATGTGTAGATT+TGG | - | chr3.4:64287961-64287980 | MS.gene38389:intron | 20.0% |
| !!! | TATGCCTTATATTTTAAGAA+TGG | - | chr3.4:64288578-64288597 | MS.gene38389:CDS | 20.0% |
| !!! | TTTTTTTTAGCCAAATAGAA+AGG | + | chr3.4:64287939-64287958 | None:intergenic | 20.0% |
| ! | AAAACTAAGAATGAAAATGC+AGG | - | chr3.4:64290054-64290073 | MS.gene38389:CDS | 25.0% |
| ! | AAAATAATCACGGTAAAGTA+CGG | + | chr3.4:64288962-64288981 | None:intergenic | 25.0% |
| ! | AAACTAAGAATGAAAATGCA+GGG | - | chr3.4:64290055-64290074 | MS.gene38389:CDS | 25.0% |
| ! | ATAAAAAACTCACGATTTAC+TGG | - | chr3.4:64290136-64290155 | MS.gene38389:CDS | 25.0% |
| ! | ATAAGCTGTTTATCCAAATA+TGG | - | chr3.4:64288166-64288185 | MS.gene38389:intron | 25.0% |
| ! | ATAATCATCTAATACTGAAC+AGG | - | chr3.4:64289674-64289693 | MS.gene38389:intron | 25.0% |
| ! | ATATCACTATTACATAGCAT+TGG | - | chr3.4:64289171-64289190 | MS.gene38389:intron | 25.0% |
| ! | ATTGAAGGGAAAATGAAATA+CGG | + | chr3.4:64289048-64289067 | None:intergenic | 25.0% |
| ! | CTAATACATACTTAATAGCT+CGG | + | chr3.4:64287996-64288015 | None:intergenic | 25.0% |
| ! | GAAATAAGGTCATGAAAAAT+TGG | + | chr3.4:64289935-64289954 | None:intergenic | 25.0% |
| ! | GAGCTATTAAGTATGTATTA+GGG | - | chr3.4:64287995-64288014 | MS.gene38389:intron | 25.0% |
| ! | TAAAAAACTCACGATTTACT+GGG | - | chr3.4:64290137-64290156 | MS.gene38389:CDS | 25.0% |
| ! | TAGCATATGAAAACAACTTA+TGG | - | chr3.4:64288124-64288143 | MS.gene38389:intron | 25.0% |
| ! | TCACTTATAAACACATCTAA+TGG | + | chr3.4:64288546-64288565 | None:intergenic | 25.0% |
| ! | TCATCTGATAATTATGAAGA+TGG | - | chr3.4:64287602-64287621 | MS.gene38389:CDS | 25.0% |
| ! | TGGAAATTTGATAAAGAAAC+TGG | - | chr3.4:64287638-64287657 | MS.gene38389:CDS | 25.0% |
| !! | AATATGTTGTTTATCCAAAC+AGG | + | chr3.4:64288224-64288243 | None:intergenic | 25.0% |
| !! | ATATGTTGTTTATCCAAACA+GGG | + | chr3.4:64288223-64288242 | None:intergenic | 25.0% |
| !! | TTGAAAAAAGATTCCTTTTG+TGG | - | chr3.4:64288398-64288417 | MS.gene38389:CDS | 25.0% |
| !!! | ACAAAAGGAATCTTTTTTCA+AGG | + | chr3.4:64288399-64288418 | None:intergenic | 25.0% |
| !!! | AGTAAATCGTGAGTTTTTTA+TGG | + | chr3.4:64290137-64290156 | None:intergenic | 25.0% |
| !!! | TTCTATCTTTGAAATTTTCG+TGG | - | chr3.4:64289422-64289441 | MS.gene38389:intron | 25.0% |
| !!! | TTTTACCATTCTAGCTTTTA+AGG | - | chr3.4:64287667-64287686 | MS.gene38389:CDS | 25.0% |
| AAGGATTAAAACAAGTTGTG+AGG | + | chr3.4:64288327-64288346 | None:intergenic | 30.0% | |
| AAGTTTGACACCATATATGA+AGG | - | chr3.4:64289614-64289633 | MS.gene38389:intron | 30.0% | |
| AGAAATGAAAAAGTCATGCA+TGG | + | chr3.4:64287431-64287450 | None:intergenic | 30.0% | |
| ATGTCATTCAATTTCTTGGA+TGG | + | chr3.4:64289997-64290016 | None:intergenic | 30.0% | |
| ATTGCCAAATACTATAGTGA+AGG | - | chr3.4:64290270-64290289 | MS.gene38389:CDS | 30.0% | |
| ATTGCTACATAAGTGATTGA+AGG | + | chr3.4:64289063-64289082 | None:intergenic | 30.0% | |
| CAAGAAATTGAATGACATGA+AGG | - | chr3.4:64289999-64290018 | MS.gene38389:intron | 30.0% | |
| CATGAAAAATTGGAGTTTAC+AGG | + | chr3.4:64289925-64289944 | None:intergenic | 30.0% | |
| CGAGCTATTAAGTATGTATT+AGG | - | chr3.4:64287994-64288013 | MS.gene38389:intron | 30.0% | |
| CTTCATGTCATTCAATTTCT+TGG | + | chr3.4:64290001-64290020 | None:intergenic | 30.0% | |
| GATAATTATGAAGATGGTGT+TGG | - | chr3.4:64287608-64287627 | MS.gene38389:CDS | 30.0% | |
| TATTCACCTACCTTCATATA+TGG | + | chr3.4:64289627-64289646 | None:intergenic | 30.0% | |
| TGGATAAACAACATATTCTC+TGG | - | chr3.4:64288227-64288246 | MS.gene38389:intron | 30.0% | |
| TTGCTACATAAGTGATTGAA+GGG | + | chr3.4:64289062-64289081 | None:intergenic | 30.0% | |
| TTTAAGAATGGTGTTTGTGA+TGG | - | chr3.4:64288590-64288609 | MS.gene38389:CDS | 30.0% | |
| ! | ACTCTTTATAAACGCTTTTC+AGG | - | chr3.4:64288263-64288282 | MS.gene38389:intron | 30.0% |
| ! | ATTTGTTTCATTAGTCTGGT+TGG | - | chr3.4:64288691-64288710 | MS.gene38389:CDS | 30.0% |
| ! | CGAGTTCTTGATTTTTATCA+TGG | + | chr3.4:64289461-64289480 | None:intergenic | 30.0% |
| ! | TCTTTTTGTACCATTCAAGT+TGG | + | chr3.4:64290035-64290054 | None:intergenic | 30.0% |
| ! | TGACTATAGATTCTTGCTTT+TGG | - | chr3.4:64290424-64290443 | MS.gene38389:intron | 30.0% |
| !! | AAGCACTTGTTAGACTTTTT+AGG | - | chr3.4:64288032-64288051 | MS.gene38389:intron | 30.0% |
| !! | ACTGATATTAGTTTGCAGTT+AGG | - | chr3.4:64289585-64289604 | MS.gene38389:intron | 30.0% |
| !! | AGCACTTGTTAGACTTTTTA+GGG | - | chr3.4:64288033-64288052 | MS.gene38389:intron | 30.0% |
| !! | CTGATATTAGTTTGCAGTTA+GGG | - | chr3.4:64289586-64289605 | MS.gene38389:intron | 30.0% |
| !! | CTTTTTGTACCATTCAAGTT+GGG | + | chr3.4:64290034-64290053 | None:intergenic | 30.0% |
| !! | GACTATAGATTCTTGCTTTT+GGG | - | chr3.4:64290425-64290444 | MS.gene38389:intron | 30.0% |
| !! | GTTGTTTTCATATGCTATCT+AGG | + | chr3.4:64288121-64288140 | None:intergenic | 30.0% |
| !! | TGATATTAGTTTGCAGTTAG+GGG | - | chr3.4:64289587-64289606 | MS.gene38389:intron | 30.0% |
| !! | TTGATTTTTATCATGGACTG+AGG | + | chr3.4:64289454-64289473 | None:intergenic | 30.0% |
| !! | TTTTAGGGAGCTTATGAAAA+CGG | - | chr3.4:64288048-64288067 | MS.gene38389:intron | 30.0% |
| AAACAGCAAGATACCACAAA+AGG | + | chr3.4:64288414-64288433 | None:intergenic | 35.0% | |
| AACGAGTATGGTAGAATACA+GGG | + | chr3.4:64288999-64289018 | None:intergenic | 35.0% | |
| ACAACATATTCTCTGGCAAA+AGG | - | chr3.4:64288234-64288253 | MS.gene38389:intron | 35.0% | |
| ACAAGCAGGCAAAGTAAAAA+TGG | + | chr3.4:64288634-64288653 | None:intergenic | 35.0% | |
| ACCACCTTCACTATAGTATT+TGG | + | chr3.4:64290277-64290296 | None:intergenic | 35.0% | |
| AGAAGCCTTAAAAGCTAGAA+TGG | + | chr3.4:64287675-64287694 | None:intergenic | 35.0% | |
| AGTTCTTCACCCTTATCAAA+AGG | + | chr3.4:64289772-64289791 | None:intergenic | 35.0% | |
| ATATCAGTTGCTAGTGAATC+TGG | + | chr3.4:64289573-64289592 | None:intergenic | 35.0% | |
| CCAAATAGAACTACGTGATA+TGG | + | chr3.4:64289268-64289287 | None:intergenic | 35.0% | |
| GAGCATTTGTTTCATTAGTC+TGG | - | chr3.4:64288687-64288706 | MS.gene38389:CDS | 35.0% | |
| GTCTGATGTCATACCATATT+TGG | + | chr3.4:64288182-64288201 | None:intergenic | 35.0% | |
| GTTCTTCACCCTTATCAAAA+GGG | + | chr3.4:64289771-64289790 | None:intergenic | 35.0% | |
| TAGAGCAAGAAAGGAGATTA+GGG | + | chr3.4:64288856-64288875 | None:intergenic | 35.0% | |
| TAGTACACATAGCAAGAATG+TGG | - | chr3.4:64290392-64290411 | MS.gene38389:intron | 35.0% | |
| TAGTATTTGGCAATAGCTAG+TGG | + | chr3.4:64290264-64290283 | None:intergenic | 35.0% | |
| TGATGGAAATCCTCATTTCT+GGG | - | chr3.4:64288607-64288626 | MS.gene38389:CDS | 35.0% | |
| TTGACACCATATATGAAGGT+AGG | - | chr3.4:64289618-64289637 | MS.gene38389:intron | 35.0% | |
| TTTCTTCAAGGTCGTTGTTT+AGG | + | chr3.4:64288449-64288468 | None:intergenic | 35.0% | |
| ! | ACAGAACAACCCTTTTGATA+AGG | - | chr3.4:64289759-64289778 | MS.gene38389:intron | 35.0% |
| ! | AGCAACATGGATAGATTTTC+CGG | - | chr3.4:64289524-64289543 | MS.gene38389:intron | 35.0% |
| ! | CACATCTCTTTTCAAATGTC+TGG | - | chr3.4:64288884-64288903 | MS.gene38389:intron | 35.0% |
| ! | CAGAACAACCCTTTTGATAA+GGG | - | chr3.4:64289760-64289779 | MS.gene38389:intron | 35.0% |
| ! | CCATATCACGTAGTTCTATT+TGG | - | chr3.4:64289265-64289284 | MS.gene38389:intron | 35.0% |
| ! | CTCCAACTGTTTGAAATGAT+CGG | + | chr3.4:64290325-64290344 | None:intergenic | 35.0% |
| ! | CTTTTATGTGGAGAGTTGAA+GGG | - | chr3.4:64290468-64290487 | MS.gene38389:intron | 35.0% |
| ! | GAACTCGAATCTGTTGATTA+TGG | - | chr3.4:64289474-64289493 | MS.gene38389:intron | 35.0% |
| ! | GAATGACATGAAGGTACATA+TGG | - | chr3.4:64290008-64290027 | MS.gene38389:intron | 35.0% |
| ! | TAGTAGTCCATGATTTGCAA+AGG | + | chr3.4:64287580-64287599 | None:intergenic | 35.0% |
| ! | TCTTTTATGTGGAGAGTTGA+AGG | - | chr3.4:64290467-64290486 | MS.gene38389:intron | 35.0% |
| ! | TGATGAGTTGCTGTTGTATT+TGG | - | chr3.4:64288665-64288684 | MS.gene38389:CDS | 35.0% |
| ! | TTTTGTTGCAGATTTAGCAG+TGG | - | chr3.4:64287518-64287537 | MS.gene38389:CDS | 35.0% |
| !! | CATGACTAAGTTCTGAAATG+AGG | - | chr3.4:64289797-64289816 | MS.gene38389:intron | 35.0% |
| !!! | CTTTGAAATTTTCGTGGCAT+TGG | - | chr3.4:64289428-64289447 | MS.gene38389:intron | 35.0% |
| !!! | GGATAAACAGCTTATTTTGC+AGG | + | chr3.4:64288161-64288180 | None:intergenic | 35.0% |
| AAAATCACCAGGAGCTTGAT+AGG | - | chr3.4:64287825-64287844 | MS.gene38389:CDS | 40.0% | |
| AAAGCTGAACCTTCTCTTTG+TGG | + | chr3.4:64290192-64290211 | None:intergenic | 40.0% | |
| AACCAAATCAGCTTGAACAC+TGG | + | chr3.4:64287699-64287718 | None:intergenic | 40.0% | |
| AACCGTTCCACTTACAAGTT+CGG | + | chr3.4:64289725-64289744 | None:intergenic | 40.0% | |
| AAGAAGTTGCATCAGAACAC+AGG | + | chr3.4:64289389-64289408 | None:intergenic | 40.0% | |
| AATTTCCTGTCACCAACAAG+GGG | + | chr3.4:64289237-64289256 | None:intergenic | 40.0% | |
| ACTTGTAAGTGGAACGGTTA+AGG | - | chr3.4:64289726-64289745 | MS.gene38389:intron | 40.0% | |
| AGGGACTACTTACAGAAGAA+TGG | - | chr3.4:64290233-64290252 | MS.gene38389:CDS | 40.0% | |
| ATACGAGCTAGATATGAGCT+TGG | + | chr3.4:64288753-64288772 | None:intergenic | 40.0% | |
| ATCAAAAGGGTTGTTCTGTG+AGG | + | chr3.4:64289758-64289777 | None:intergenic | 40.0% | |
| ATCTCCATGGTAAAGCAACA+TGG | - | chr3.4:64289511-64289530 | MS.gene38389:intron | 40.0% | |
| ATTTCAAACAGTTGGAGGAG+TGG | - | chr3.4:64290328-64290347 | MS.gene38389:CDS | 40.0% | |
| CAACAGCAACTCATCAACAA+AGG | + | chr3.4:64288661-64288680 | None:intergenic | 40.0% | |
| CAATTGACCATGATGCTGTT+GGG | - | chr3.4:64290109-64290128 | MS.gene38389:CDS | 40.0% | |
| CAATTTCCTGTCACCAACAA+GGG | + | chr3.4:64289238-64289257 | None:intergenic | 40.0% | |
| CACAGGATGAATGTTCCAAA+AGG | + | chr3.4:64289372-64289391 | None:intergenic | 40.0% | |
| CACGATTTACTGGGAAAAGA+TGG | - | chr3.4:64290146-64290165 | MS.gene38389:CDS | 40.0% | |
| CATCTAATACTGAACAGGTG+TGG | - | chr3.4:64289679-64289698 | MS.gene38389:intron | 40.0% | |
| CCAACTTGGATCGATAGTTT+GGG | - | chr3.4:64288473-64288492 | MS.gene38389:CDS | 40.0% | |
| CCATGTCCAGTAACAATCAA+TGG | + | chr3.4:64289120-64289139 | None:intergenic | 40.0% | |
| CGATCATTTCAAACAGTTGG+AGG | - | chr3.4:64290323-64290342 | MS.gene38389:CDS | 40.0% | |
| CTAGAGCAAGAAAGGAGATT+AGG | + | chr3.4:64288857-64288876 | None:intergenic | 40.0% | |
| CTAGATGCATAGAACGAGTA+TGG | + | chr3.4:64289011-64289030 | None:intergenic | 40.0% | |
| GAACGAGTATGGTAGAATAC+AGG | + | chr3.4:64289000-64289019 | None:intergenic | 40.0% | |
| GATGGAAATCCTCATTTCTG+GGG | - | chr3.4:64288608-64288627 | MS.gene38389:CDS | 40.0% | |
| GCCAAATACTATAGTGAAGG+TGG | - | chr3.4:64290273-64290292 | MS.gene38389:CDS | 40.0% | |
| GGTTTCTTCTGCTGAACTTA+AGG | - | chr3.4:64287715-64287734 | MS.gene38389:CDS | 40.0% | |
| GTAACAATCAATGGAGTCTG+TGG | + | chr3.4:64289111-64289130 | None:intergenic | 40.0% | |
| GTCCGATCATTTCAAACAGT+TGG | - | chr3.4:64290320-64290339 | MS.gene38389:CDS | 40.0% | |
| TAAAAATGGCCCCAGAAATG+AGG | + | chr3.4:64288620-64288639 | None:intergenic | 40.0% | |
| TAATGAAGAGCCTTGGAAGT+GGG | + | chr3.4:64289326-64289345 | None:intergenic | 40.0% | |
| TACATATGGCCCAACTTGAA+TGG | - | chr3.4:64290022-64290041 | MS.gene38389:intron | 40.0% | |
| TACGAGCTAGATATGAGCTT+GGG | + | chr3.4:64288752-64288771 | None:intergenic | 40.0% | |
| TAGTCCCTCCATATAACCAA+CGG | + | chr3.4:64290221-64290240 | None:intergenic | 40.0% | |
| TCAACAAAGGATACACAAGC+AGG | + | chr3.4:64288648-64288667 | None:intergenic | 40.0% | |
| TGAAAAAGTCATGCATGGCA+TGG | + | chr3.4:64287426-64287445 | None:intergenic | 40.0% | |
| TGTGAGGTTAAACAAGCTCA+AGG | + | chr3.4:64288311-64288330 | None:intergenic | 40.0% | |
| TTCCAGTGTTCAAGCTGATT+TGG | - | chr3.4:64287694-64287713 | MS.gene38389:CDS | 40.0% | |
| TTCTTCTGCTGAACTTAAGG+AGG | - | chr3.4:64287718-64287737 | MS.gene38389:CDS | 40.0% | |
| ! | AAGATGGTGTTGGACTTTCT+TGG | - | chr3.4:64287618-64287637 | MS.gene38389:CDS | 40.0% |
| ! | AGTCCATGATTTGCAAAGGA+TGG | + | chr3.4:64287576-64287595 | None:intergenic | 40.0% |
| ! | CAGACTCCATTGATTGTTAC+TGG | - | chr3.4:64289111-64289130 | MS.gene38389:intron | 40.0% |
| ! | CCATTGATTGTTACTGGACA+TGG | - | chr3.4:64289117-64289136 | MS.gene38389:intron | 40.0% |
| ! | GAATGTTCCAAAAGGCATGT+AGG | + | chr3.4:64289364-64289383 | None:intergenic | 40.0% |
| ! | GCTTGATAGGTTGAAAACTG+AGG | - | chr3.4:64287838-64287857 | MS.gene38389:CDS | 40.0% |
| ! | GTGATGGAAATCCTCATTTC+TGG | - | chr3.4:64288606-64288625 | MS.gene38389:CDS | 40.0% |
| ! | TTTCGTACCCGTTGGTTATA+TGG | - | chr3.4:64290210-64290229 | MS.gene38389:CDS | 40.0% |
| ! | TTTTCAACCTATCAAGCTCC+TGG | + | chr3.4:64287835-64287854 | None:intergenic | 40.0% |
| !! | CAAGTTGGCACTTTTCTTCA+AGG | + | chr3.4:64288461-64288480 | None:intergenic | 40.0% |
| !! | CTATCCATGTTGCTTTACCA+TGG | + | chr3.4:64289518-64289537 | None:intergenic | 40.0% |
| !! | CTTGAAGAAAAGTGCCAACT+TGG | - | chr3.4:64288459-64288478 | MS.gene38389:CDS | 40.0% |
| AACCAAAGGTAATGCAGAGC+GGG | + | chr3.4:64289212-64289231 | None:intergenic | 45.0% | |
| ACAGACACCGAACTTGTAAG+TGG | - | chr3.4:64289715-64289734 | MS.gene38389:intron | 45.0% | |
| ACAGTTGGAGGAGTGGTTAT+TGG | - | chr3.4:64290335-64290354 | MS.gene38389:CDS | 45.0% | |
| ACTCTTTCGCGAAAATCACC+AGG | - | chr3.4:64287814-64287833 | MS.gene38389:CDS | 45.0% | |
| AGTCCCTCCATATAACCAAC+GGG | + | chr3.4:64290220-64290239 | None:intergenic | 45.0% | |
| ATGAGCTTGGGTGGCAAATT+AGG | + | chr3.4:64288740-64288759 | None:intergenic | 45.0% | |
| ATTGTTACTGGACATGGCCT+CGG | - | chr3.4:64289123-64289142 | MS.gene38389:intron | 45.0% | |
| CACCGAACTTGTAAGTGGAA+CGG | - | chr3.4:64289720-64289739 | MS.gene38389:intron | 45.0% | |
| CAGCATCATGGTCAATTGGT+TGG | + | chr3.4:64290107-64290126 | None:intergenic | 45.0% | |
| CCAACAGCATCATGGTCAAT+TGG | + | chr3.4:64290111-64290130 | None:intergenic | 45.0% | |
| CCAATTGACCATGATGCTGT+TGG | - | chr3.4:64290108-64290127 | MS.gene38389:CDS | 45.0% | |
| CCACCATCCTTTGCAAATCA+TGG | - | chr3.4:64287570-64287589 | MS.gene38389:CDS | 45.0% | |
| CCCAAACTATCGATCCAAGT+TGG | + | chr3.4:64288476-64288495 | None:intergenic | 45.0% | |
| CGATCTGTAATGAAGAGCCT+TGG | + | chr3.4:64289333-64289352 | None:intergenic | 45.0% | |
| GAACCAAAGGTAATGCAGAG+CGG | + | chr3.4:64289213-64289232 | None:intergenic | 45.0% | |
| GAAGCAGATGCACAGAATTC+AGG | + | chr3.4:64288784-64288803 | None:intergenic | 45.0% | |
| GAGATGAAGCCACAAAGAGA+AGG | - | chr3.4:64290180-64290199 | MS.gene38389:CDS | 45.0% | |
| GCAATTTCCTGTCACCAACA+AGG | + | chr3.4:64289239-64289258 | None:intergenic | 45.0% | |
| GCAGAAGACTAGAGCAAGAA+AGG | + | chr3.4:64288865-64288884 | None:intergenic | 45.0% | |
| GCCAACTTGGATCGATAGTT+TGG | - | chr3.4:64288472-64288491 | MS.gene38389:CDS | 45.0% | |
| GCTCGCGTCAAAAAGAGATA+AGG | + | chr3.4:64288289-64288308 | None:intergenic | 45.0% | |
| GTAATGAAGAGCCTTGGAAG+TGG | + | chr3.4:64289327-64289346 | None:intergenic | 45.0% | |
| GTGCATCTGCTTCATTGCTT+TGG | - | chr3.4:64288791-64288810 | MS.gene38389:CDS | 45.0% | |
| TATGGAACCCAACAGCATCA+TGG | + | chr3.4:64290119-64290138 | None:intergenic | 45.0% | |
| ! | ACCAGTACCTACATGCCTTT+TGG | - | chr3.4:64289354-64289373 | MS.gene38389:intron | 45.0% |
| ! | CCATGATTTGCAAAGGATGG+TGG | + | chr3.4:64287573-64287592 | None:intergenic | 45.0% |
| ! | GAGGAGGCTCTTCTTTTATG+TGG | - | chr3.4:64290456-64290475 | MS.gene38389:intron | 45.0% |
| ! | GTACCCGTTGGTTATATGGA+GGG | - | chr3.4:64290214-64290233 | MS.gene38389:CDS | 45.0% |
| ! | GTCAAGTTTTCAGCTTGAGC+CGG | + | chr3.4:64289546-64289565 | None:intergenic | 45.0% |
| ! | TCCAAAAGGCATGTAGGTAC+TGG | + | chr3.4:64289358-64289377 | None:intergenic | 45.0% |
| !! | AGTTCGGTGTCTGTTGTCAA+TGG | + | chr3.4:64289709-64289728 | None:intergenic | 45.0% |
| !! | TTGCTTTTGGGCACATGTTG+AGG | - | chr3.4:64290437-64290456 | MS.gene38389:intron | 45.0% |
| ACCAACAAGGGGTGAACCAA+AGG | + | chr3.4:64289226-64289245 | None:intergenic | 50.0% | |
| CACACAAAGACCCACTTCCA+AGG | - | chr3.4:64289313-64289332 | MS.gene38389:intron | 50.0% | |
| CAGACTCTGTCCACACACTA+AGG | - | chr3.4:64288197-64288216 | MS.gene38389:intron | 50.0% | |
| CGGTGTCTGTTGTCAATGGA+GGG | + | chr3.4:64289705-64289724 | None:intergenic | 50.0% | |
| GAGAAGCAATTGATCCTCCG+AGG | + | chr3.4:64289143-64289162 | None:intergenic | 50.0% | |
| GAGCTAGATATGAGCTTGGG+TGG | + | chr3.4:64288749-64288768 | None:intergenic | 50.0% | |
| TGGGTGGCAAATTAGGAACG+CGG | + | chr3.4:64288733-64288752 | None:intergenic | 50.0% | |
| ! | ACCTTTGGTTCACCCCTTGT+TGG | - | chr3.4:64289222-64289241 | MS.gene38389:intron | 50.0% |
| ! | CGTACCCGTTGGTTATATGG+AGG | - | chr3.4:64290213-64290232 | MS.gene38389:CDS | 50.0% |
| ! | CTTTTGGGCACATGTTGAGG+AGG | - | chr3.4:64290440-64290459 | MS.gene38389:intron | 50.0% |
| ! | GTTCAGCTTTTCGTACCCGT+TGG | - | chr3.4:64290202-64290221 | MS.gene38389:CDS | 50.0% |
| ! | TCGGTGTCTGTTGTCAATGG+AGG | + | chr3.4:64289706-64289725 | None:intergenic | 50.0% |
| CCAAACAGGGCCTTAGTGTG+TGG | + | chr3.4:64288210-64288229 | None:intergenic | 55.0% | |
| CCACACACTAAGGCCCTGTT+TGG | - | chr3.4:64288207-64288226 | MS.gene38389:intron | 55.0% | |
| !! | GTTCACCCCTTGTTGGTGAC+AGG | - | chr3.4:64289229-64289248 | MS.gene38389:intron | 55.0% |
| CGCCCGCTCTGCATTACCTT+TGG | - | chr3.4:64289207-64289226 | MS.gene38389:intron | 60.0% | |
| GTTACTGGACATGGCCTCGG+AGG | - | chr3.4:64289126-64289145 | MS.gene38389:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 64287379 | 64290533 | 64287379 | ID=MS.gene38389 |
| chr3.4 | mRNA | 64287379 | 64290533 | 64287379 | ID=MS.gene38389.t1;Parent=MS.gene38389 |
| chr3.4 | exon | 64290517 | 64290533 | 64290517 | ID=MS.gene38389.t1.exon1;Parent=MS.gene38389.t1 |
| chr3.4 | CDS | 64290517 | 64290533 | 64290517 | ID=cds.MS.gene38389.t1;Parent=MS.gene38389.t1 |
| chr3.4 | exon | 64290053 | 64290383 | 64290053 | ID=MS.gene38389.t1.exon2;Parent=MS.gene38389.t1 |
| chr3.4 | CDS | 64290053 | 64290383 | 64290053 | ID=cds.MS.gene38389.t1;Parent=MS.gene38389.t1 |
| chr3.4 | exon | 64288277 | 64288819 | 64288277 | ID=MS.gene38389.t1.exon3;Parent=MS.gene38389.t1 |
| chr3.4 | CDS | 64288277 | 64288819 | 64288277 | ID=cds.MS.gene38389.t1;Parent=MS.gene38389.t1 |
| chr3.4 | exon | 64287379 | 64287936 | 64287379 | ID=MS.gene38389.t1.exon4;Parent=MS.gene38389.t1 |
| chr3.4 | CDS | 64287379 | 64287936 | 64287379 | ID=cds.MS.gene38389.t1;Parent=MS.gene38389.t1 |
| Gene Sequence |
| Protein sequence |
