Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38390.t1 | KEH34494.1 | 71.2 | 572 | 45 | 3 | 1 | 542 | 1 | 482 | 1.30E-212 | 749.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38390.t1 | Q4F883 | 32.7 | 550 | 320 | 14 | 10 | 534 | 9 | 533 | 7.5e-63 | 243.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38390.t1 | A0A072UXG4 | 71.2 | 572 | 45 | 3 | 1 | 542 | 1 | 482 | 9.6e-213 | 749.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049566 | MS.gene38390 | 0.815674 | 8.19E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38390.t1 | MTR_3g467360 | 67.785 | 596 | 117 | 6 | 1 | 542 | 1 | 575 | 0.0 | 780 |
| MS.gene38390.t1 | MTR_3g467360 | 67.227 | 595 | 120 | 6 | 2 | 542 | 8 | 581 | 0.0 | 769 |
| MS.gene38390.t1 | MTR_3g467350 | 62.609 | 575 | 89 | 13 | 1 | 542 | 1 | 482 | 0.0 | 637 |
| MS.gene38390.t1 | MTR_6g007975 | 57.530 | 591 | 178 | 10 | 5 | 542 | 7 | 577 | 0.0 | 623 |
| MS.gene38390.t1 | MTR_6g008015 | 55.593 | 590 | 192 | 6 | 5 | 542 | 7 | 578 | 0.0 | 622 |
| MS.gene38390.t1 | MTR_6g008055 | 56.500 | 600 | 178 | 10 | 1 | 542 | 1 | 575 | 0.0 | 608 |
| MS.gene38390.t1 | MTR_6g007985 | 56.710 | 462 | 149 | 4 | 130 | 542 | 42 | 501 | 4.01e-177 | 509 |
| MS.gene38390.t1 | MTR_6g007980 | 47.833 | 600 | 229 | 10 | 1 | 541 | 1 | 575 | 4.58e-173 | 501 |
| MS.gene38390.t1 | MTR_6g007980 | 47.667 | 600 | 231 | 9 | 1 | 541 | 1 | 576 | 3.36e-170 | 494 |
| MS.gene38390.t1 | MTR_6g007980 | 47.587 | 601 | 231 | 10 | 1 | 541 | 1 | 577 | 2.25e-168 | 489 |
| MS.gene38390.t1 | MTR_0286s0040 | 48.667 | 450 | 106 | 10 | 146 | 542 | 10 | 387 | 1.68e-121 | 363 |
| MS.gene38390.t1 | MTR_0286s0050 | 59.836 | 122 | 46 | 2 | 5 | 123 | 7 | 128 | 8.93e-37 | 134 |
| MS.gene38390.t1 | MTR_8g494200 | 26.347 | 334 | 210 | 11 | 199 | 513 | 295 | 611 | 4.16e-23 | 103 |
| MS.gene38390.t1 | MTR_3g078633 | 25.000 | 336 | 183 | 12 | 200 | 506 | 304 | 599 | 5.69e-16 | 81.3 |
| MS.gene38390.t1 | MTR_3g078633 | 25.000 | 336 | 183 | 12 | 200 | 506 | 232 | 527 | 9.37e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38390.t1 | AT5G14930 | 31.607 | 560 | 315 | 15 | 10 | 535 | 9 | 534 | 7.65e-77 | 252 |
| MS.gene38390.t1 | AT3G52430 | 24.413 | 426 | 245 | 14 | 148 | 513 | 112 | 520 | 3.60e-24 | 106 |
| MS.gene38390.t1 | AT5G14930 | 31.841 | 201 | 112 | 4 | 10 | 201 | 9 | 193 | 1.65e-18 | 85.5 |
Find 84 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACGTCATTCAATTTCT+TGG | 0.211999 | 3.4:+64282933 | None:intergenic |
| GAACGAGTATAAAGCAATTA+AGG | 0.216540 | 3.4:-64282323 | MS.gene38390:CDS |
| TATCTTGAAGCAGAATATTT+AGG | 0.216706 | 3.4:-64283479 | MS.gene38390:CDS |
| GAACTTGAATCTGTTGATTA+TGG | 0.222882 | 3.4:-64283521 | MS.gene38390:CDS |
| CTAGTATCCTTTGTAAATCT+TGG | 0.263323 | 3.4:-64285478 | MS.gene38390:CDS |
| TTTCGTACCCGTTGGTTATA+TGG | 0.263482 | 3.4:-64282721 | MS.gene38390:CDS |
| TGACTACAGATTCTTGCTTT+TGG | 0.265156 | 3.4:-64282516 | MS.gene38390:CDS |
| AAGACTATGTTCATAATAAA+AGG | 0.271277 | 3.4:-64282633 | MS.gene38390:CDS |
| CACCATTTACTGGGAGAAAA+TGG | 0.274895 | 3.4:-64282785 | MS.gene38390:CDS |
| TTCCAAATTTCTCTGTTAAC+AGG | 0.278809 | 3.4:-64285253 | MS.gene38390:CDS |
| GTCCTGTTAACAGAGAAATT+TGG | 0.290860 | 3.4:+64285251 | None:intergenic |
| ACGATGGTATTGATCTTTCT+TGG | 0.307765 | 3.4:-64285418 | MS.gene38390:CDS |
| GGCTGAAAACATGACTAATA+AGG | 0.316954 | 3.4:-64283444 | MS.gene38390:CDS |
| AAAGAAATTATTTGAATTTG+AGG | 0.327326 | 3.4:-64282425 | MS.gene38390:CDS |
| TAGTATCCTTTGTAAATCTT+GGG | 0.330876 | 3.4:-64285477 | MS.gene38390:CDS |
| TGGTATTAGTTTGCAGTTGC+GGG | 0.335752 | 3.4:-64283408 | MS.gene38390:CDS |
| CCAAATAGAACTACGTGATA+TGG | 0.336582 | 3.4:+64283732 | None:intergenic |
| TGCATTAACATTGTTACATA+AGG | 0.340623 | 3.4:+64283931 | None:intergenic |
| GATAAAATGATATCTTCTTC+TGG | 0.362165 | 3.4:+64282959 | None:intergenic |
| CCAACTTGAATGGTTCAAAA+AGG | 0.363314 | 3.4:-64282899 | MS.gene38390:CDS |
| TATATGGCGGGACTACTTAC+AGG | 0.369439 | 3.4:-64282705 | MS.gene38390:CDS |
| CGTCCACTCTGCATCACATT+TGG | 0.376947 | 3.4:-64283790 | MS.gene38390:CDS |
| AGTTTCTTCAACTGAACTTA+AGG | 0.383974 | 3.4:-64285318 | MS.gene38390:CDS |
| TTCAGTTGAAGAAACTAAAT+CGG | 0.395067 | 3.4:+64285325 | None:intergenic |
| CTATTACAAAATGTTGGTTC+AGG | 0.398260 | 3.4:-64283820 | MS.gene38390:CDS |
| GCATTAACATTGTTACATAA+GGG | 0.401068 | 3.4:+64283932 | None:intergenic |
| GCAACTAAGAATCAACAGAT+AGG | 0.402036 | 3.4:-64282877 | MS.gene38390:CDS |
| CTGATAATGAAGACATCGTT+TGG | 0.405667 | 3.4:-64285442 | MS.gene38390:CDS |
| ATTGTTACATAAGGGATTGC+AGG | 0.410033 | 3.4:+64283940 | None:intergenic |
| GTTCACCCCTTGTTGGTGAT+AGG | 0.416099 | 3.4:-64283768 | MS.gene38390:CDS |
| AGTTTGCAGTTGCGGGAACT+AGG | 0.421150 | 3.4:-64283401 | MS.gene38390:CDS |
| GTATTGTTTGTATCACTTGT+TGG | 0.422070 | 3.4:+64282565 | None:intergenic |
| TGAGAACACAGATTCTATCT+TGG | 0.423952 | 3.4:-64283585 | MS.gene38390:intron |
| AACTAAATCGGCTTGAACAT+TGG | 0.429796 | 3.4:+64285337 | None:intergenic |
| ACTCTTTCGTGATAATCATC+AGG | 0.438549 | 3.4:-64285219 | MS.gene38390:CDS |
| AAGATTGAGCAATATGCTAT+AGG | 0.443681 | 3.4:-64282253 | MS.gene38390:CDS |
| ATTGACTTGGCAGCAGCAAC+AGG | 0.449441 | 3.4:-64283043 | MS.gene38390:intron |
| AACGAGTATAAAGCAATTAA+GGG | 0.451013 | 3.4:-64282322 | MS.gene38390:CDS |
| ACGTCATTCAATTTCTTGGA+TGG | 0.457785 | 3.4:+64282937 | None:intergenic |
| ACAGTTGGAGGAATGGTTGA+TGG | 0.465873 | 3.4:-64282596 | MS.gene38390:CDS |
| AATAAGGACTCACTGGCAAC+TGG | 0.477282 | 3.4:-64283428 | MS.gene38390:CDS |
| AATCAACGGAGTCGATAGAT+TGG | 0.480720 | 3.4:+64283894 | None:intergenic |
| GTCTAAACACTTCAAACAGT+TGG | 0.484439 | 3.4:-64282611 | MS.gene38390:CDS |
| ACATTTGGTTCACCCCTTGT+TGG | 0.489434 | 3.4:-64283775 | MS.gene38390:CDS |
| CTTGGAAATTCTCGTGGCGT+TGG | 0.490276 | 3.4:-64283567 | MS.gene38390:CDS |
| ATTGCTGAATACTATAGAAA+AGG | 0.495339 | 3.4:-64282661 | MS.gene38390:CDS |
| GAATGACGTGAAGGTACATA+TGG | 0.498676 | 3.4:-64282923 | MS.gene38390:CDS |
| TACATATGGCCCAACTTGAA+TGG | 0.501655 | 3.4:-64282909 | MS.gene38390:CDS |
| AGGGTTGACGCCACATATGC+AGG | 0.504580 | 3.4:-64283381 | MS.gene38390:intron |
| ACTTCAAACAGTTGGAGGAA+TGG | 0.506869 | 3.4:-64282603 | MS.gene38390:CDS |
| CGCAAAGCAGCTATATTCGT+TGG | 0.515903 | 3.4:-64282348 | MS.gene38390:CDS |
| CTGGTATTAGTTTGCAGTTG+CGG | 0.516244 | 3.4:-64283409 | MS.gene38390:CDS |
| TATTCACTTACCTGCATATG+TGG | 0.529136 | 3.4:+64283371 | None:intergenic |
| GTTTGCAGTTGCGGGAACTA+GGG | 0.530111 | 3.4:-64283400 | MS.gene38390:CDS |
| ATATCACTATTACAAAATGT+TGG | 0.532409 | 3.4:-64283826 | MS.gene38390:CDS |
| GGCTTGAACATTGGAAGAAG+TGG | 0.545668 | 3.4:+64285346 | None:intergenic |
| CATGACTAATAAGGACTCAC+TGG | 0.550112 | 3.4:-64283435 | MS.gene38390:CDS |
| CGGGACTACTTACAGGAGAA+TGG | 0.550383 | 3.4:-64282698 | MS.gene38390:CDS |
| GTACCCGTTGGTTATATGGC+GGG | 0.551660 | 3.4:-64282717 | MS.gene38390:CDS |
| TAAACACTTCAAACAGTTGG+AGG | 0.552501 | 3.4:-64282608 | MS.gene38390:CDS |
| ACTAGAGAAGTTGAAAATTG+AGG | 0.555998 | 3.4:-64285195 | MS.gene38390:intron |
| AGTCCCGCCATATAACCAAC+GGG | 0.560290 | 3.4:+64282714 | None:intergenic |
| CAACTAAGAATCAACAGATA+GGG | 0.567321 | 3.4:-64282876 | MS.gene38390:CDS |
| TTCTATCTTGGAAATTCTCG+TGG | 0.570429 | 3.4:-64283573 | MS.gene38390:CDS |
| CAGTTGGAGGAATGGTTGAT+GGG | 0.574475 | 3.4:-64282595 | MS.gene38390:CDS |
| TTGTTACATAAGGGATTGCA+GGG | 0.580874 | 3.4:+64283941 | None:intergenic |
| GTATGTTTATAAGTTGCTCA+AGG | 0.585546 | 3.4:-64282401 | MS.gene38390:CDS |
| CAAGAAATTGAATGACGTGA+AGG | 0.598467 | 3.4:-64282932 | MS.gene38390:CDS |
| CAATACACGTAGAAAGAATG+TGG | 0.608038 | 3.4:-64282548 | MS.gene38390:CDS |
| GCAATCTCCTATCACCAACA+AGG | 0.608291 | 3.4:+64283761 | None:intergenic |
| CGTACCCGTTGGTTATATGG+CGG | 0.608775 | 3.4:-64282718 | MS.gene38390:CDS |
| AAAATGATATCTTCTTCTGG+TGG | 0.609974 | 3.4:+64282962 | None:intergenic |
| CAATCTCCTATCACCAACAA+GGG | 0.614885 | 3.4:+64283762 | None:intergenic |
| GAAGACATCGTTTGGAACGA+TGG | 0.618499 | 3.4:-64285434 | MS.gene38390:CDS |
| TAGTCCCGCCATATAACCAA+CGG | 0.621326 | 3.4:+64282713 | None:intergenic |
| TATGGAACTCAGCAACATCA+CGG | 0.627880 | 3.4:+64282815 | None:intergenic |
| TAGCAGCCCAAGATTTACAA+AGG | 0.631961 | 3.4:+64285471 | None:intergenic |
| AAAGCAGCTATATTCGTTGG+TGG | 0.633457 | 3.4:-64282345 | MS.gene38390:CDS |
| GCTGAATACTATAGAAAAGG+CGG | 0.641083 | 3.4:-64282658 | MS.gene38390:CDS |
| TTTACTGGAAATGGTCTCGG+AGG | 0.644468 | 3.4:-64283871 | MS.gene38390:CDS |
| TAGTATTCAGCAATAGCTAG+AGG | 0.652060 | 3.4:+64282670 | None:intergenic |
| GAACCAAATGTGATGCAGAG+TGG | 0.684884 | 3.4:+64283787 | None:intergenic |
| TACACGTAGAAAGAATGTGG+AGG | 0.709499 | 3.4:-64282545 | MS.gene38390:CDS |
| AATCTCCTATCACCAACAAG+GGG | 0.735230 | 3.4:+64283763 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTTATACTATTTATATT+AGG | - | chr3.4:64283102-64283121 | MS.gene38390:intron | 10.0% |
| !! | AAAGAAATTATTTGAATTTG+AGG | - | chr3.4:64285477-64285496 | MS.gene38390:CDS | 15.0% |
| !! | AAATAGTATAAATTGTGATA+GGG | + | chr3.4:64283097-64283116 | None:intergenic | 15.0% |
| !! | ATTCTATATAAACTCTTATT+AGG | - | chr3.4:64283162-64283181 | MS.gene38390:intron | 15.0% |
| !! | TAAATAGTATAAATTGTGAT+AGG | + | chr3.4:64283098-64283117 | None:intergenic | 15.0% |
| !! | TCTATTACAATAAAGAAAAA+GGG | + | chr3.4:64282749-64282768 | None:intergenic | 15.0% |
| !! | TTCTATTACAATAAAGAAAA+AGG | + | chr3.4:64282750-64282769 | None:intergenic | 15.0% |
| !!! | ATTTTCTGATGAAATTATAA+AGG | + | chr3.4:64283222-64283241 | None:intergenic | 15.0% |
| !! | AAAATAAGAAATCATGAACT+CGG | + | chr3.4:64283750-64283769 | None:intergenic | 20.0% |
| !! | AAGACTATGTTCATAATAAA+AGG | - | chr3.4:64285269-64285288 | MS.gene38390:CDS | 20.0% |
| !! | AGAAATATCTAATACTCAAT+AGG | - | chr3.4:64284581-64284600 | MS.gene38390:intron | 20.0% |
| !! | ATATCACTATTACAAAATGT+TGG | - | chr3.4:64284076-64284095 | MS.gene38390:intron | 20.0% |
| !! | ATGATAATAAATGTTCCAAA+AGG | + | chr3.4:64284276-64284295 | None:intergenic | 20.0% |
| !! | TATACTATTTATATTAGGCT+TGG | - | chr3.4:64283107-64283126 | MS.gene38390:intron | 20.0% |
| !!! | ATTTATAACTTCAAGTTTTC+AGG | + | chr3.4:64282322-64282341 | None:intergenic | 20.0% |
| !!! | TTTTACAATTATAGCGTTTA+AGG | - | chr3.4:64282533-64282552 | MS.gene38390:CDS | 20.0% |
| ! | AACACCATCGTTAAAATATA+AGG | + | chr3.4:64283537-64283556 | None:intergenic | 25.0% |
| ! | AACGAGTATAAAGCAATTAA+GGG | - | chr3.4:64285580-64285599 | MS.gene38390:intron | 25.0% |
| ! | AATATTTCAAATCACAAGTG+AGG | + | chr3.4:64283508-64283527 | None:intergenic | 25.0% |
| ! | ATTATGGTACAATACAATCT+AGG | + | chr3.4:64283870-64283889 | None:intergenic | 25.0% |
| ! | ATTGCTGAATACTATAGAAA+AGG | - | chr3.4:64285241-64285260 | MS.gene38390:CDS | 25.0% |
| ! | CTGATGAAATTATAAAGGTT+AGG | + | chr3.4:64283217-64283236 | None:intergenic | 25.0% |
| ! | CTTTAAATTTGACTAAGTTC+TGG | - | chr3.4:64284636-64284655 | MS.gene38390:intron | 25.0% |
| ! | GAAATAAGGTCATGAAAATT+TGG | + | chr3.4:64284835-64284854 | None:intergenic | 25.0% |
| ! | GATAAAATGATATCTTCTTC+TGG | + | chr3.4:64284946-64284965 | None:intergenic | 25.0% |
| ! | GCATTAACATTGTTACATAA+GGG | + | chr3.4:64283973-64283992 | None:intergenic | 25.0% |
| ! | TAGTATCCTTTGTAAATCTT+GGG | - | chr3.4:64282425-64282444 | MS.gene38390:CDS | 25.0% |
| ! | TATCTTGAAGCAGAATATTT+AGG | - | chr3.4:64284423-64284442 | MS.gene38390:intron | 25.0% |
| ! | TGCATTAACATTGTTACATA+AGG | + | chr3.4:64283974-64283993 | None:intergenic | 25.0% |
| ! | TTCAGTTGAAGAAACTAAAT+CGG | + | chr3.4:64282580-64282599 | None:intergenic | 25.0% |
| !! | ACACTTCAATATGTTTTTCT+CGG | - | chr3.4:64283067-64283086 | MS.gene38390:intron | 25.0% |
| !! | GAATTTTGAACTGAACTATT+AGG | - | chr3.4:64282767-64282786 | MS.gene38390:CDS | 25.0% |
| !!! | CAAGTTCTTCATTTTTATCA+TGG | + | chr3.4:64284368-64284387 | None:intergenic | 25.0% |
| !!! | TATGCCTTATATTTTAACGA+TGG | - | chr3.4:64283530-64283549 | MS.gene38390:CDS | 25.0% |
| !!! | TTTGTTGTTGTAAACATATG+AGG | - | chr3.4:64283578-64283597 | MS.gene38390:intron | 25.0% |
| AAAATGATATCTTCTTCTGG+TGG | + | chr3.4:64284943-64284962 | None:intergenic | 30.0% | |
| AACTATGCAAACCAAAGAAA+TGG | + | chr3.4:64283726-64283745 | None:intergenic | 30.0% | |
| AAGATTGAGCAATATGCTAT+AGG | - | chr3.4:64285649-64285668 | MS.gene38390:intron | 30.0% | |
| ACAAATGAAGAAGTAATGCA+TGG | + | chr3.4:64282277-64282296 | None:intergenic | 30.0% | |
| ACATATTGAAGTGTGATAAG+TGG | + | chr3.4:64283061-64283080 | None:intergenic | 30.0% | |
| ACTAGAGAAGTTGAAAATTG+AGG | - | chr3.4:64282707-64282726 | MS.gene38390:CDS | 30.0% | |
| AGTTTCTTCAACTGAACTTA+AGG | - | chr3.4:64282584-64282603 | MS.gene38390:CDS | 30.0% | |
| ATAAAAAGCTCACCATTTAC+TGG | - | chr3.4:64285107-64285126 | MS.gene38390:intron | 30.0% | |
| ATATTGAAGTGTGATAAGTG+GGG | + | chr3.4:64283059-64283078 | None:intergenic | 30.0% | |
| CAACTAAGAATCAACAGATA+GGG | - | chr3.4:64285026-64285045 | MS.gene38390:intron | 30.0% | |
| CATATTGAAGTGTGATAAGT+GGG | + | chr3.4:64283060-64283079 | None:intergenic | 30.0% | |
| CATGAATATGGTATAATACG+AGG | + | chr3.4:64283913-64283932 | None:intergenic | 30.0% | |
| CCAAGTCAATGTTAGAAATA+AGG | + | chr3.4:64284849-64284868 | None:intergenic | 30.0% | |
| CCATTTCCAGTAAAAATCAA+CGG | + | chr3.4:64284025-64284044 | None:intergenic | 30.0% | |
| CTAGTATCCTTTGTAAATCT+TGG | - | chr3.4:64282424-64282443 | MS.gene38390:CDS | 30.0% | |
| CTCGTATTATACCATATTCA+TGG | - | chr3.4:64283911-64283930 | MS.gene38390:CDS | 30.0% | |
| CTTAAAGAAAAGTGACAACT+TGG | - | chr3.4:64283357-64283376 | MS.gene38390:intron | 30.0% | |
| GAACGAGTATAAAGCAATTA+AGG | - | chr3.4:64285579-64285598 | MS.gene38390:intron | 30.0% | |
| GAACTATTAGGTAGAATTTC+TGG | - | chr3.4:64282779-64282798 | MS.gene38390:CDS | 30.0% | |
| GTATGTTTATAAGTTGCTCA+AGG | - | chr3.4:64285501-64285520 | MS.gene38390:CDS | 30.0% | |
| GTATTGTTTGTATCACTTGT+TGG | + | chr3.4:64285340-64285359 | None:intergenic | 30.0% | |
| TAAAAAGCTCACCATTTACT+GGG | - | chr3.4:64285108-64285127 | MS.gene38390:intron | 30.0% | |
| TATCTAATACTCAATAGGTG+TGG | - | chr3.4:64284586-64284605 | MS.gene38390:intron | 30.0% | |
| TGATACCATCTTAAAAATCG+TGG | - | chr3.4:64282989-64283008 | MS.gene38390:CDS | 30.0% | |
| TTCCAAATTTCTCTGTTAAC+AGG | - | chr3.4:64282649-64282668 | MS.gene38390:CDS | 30.0% | |
| ! | ACAACTTGGATTGATAGTTT+GGG | - | chr3.4:64283371-64283390 | MS.gene38390:intron | 30.0% |
| ! | ACTTTTATGCAGAGAGTTAA+AGG | - | chr3.4:64285429-64285448 | MS.gene38390:CDS | 30.0% |
| ! | AGTAAATGGTGAGCTTTTTA+TGG | + | chr3.4:64285108-64285127 | None:intergenic | 30.0% |
| ! | ATTTTTACTGGAAATGGTCT+CGG | - | chr3.4:64284028-64284047 | MS.gene38390:intron | 30.0% |
| ! | CATATCACGTAGTTCTATTT+GGG | - | chr3.4:64284171-64284190 | MS.gene38390:intron | 30.0% |
| ! | CATGAAAATTTGGAGTTTAC+AGG | + | chr3.4:64284825-64284844 | None:intergenic | 30.0% |
| ! | GAACTTGAATCTGTTGATTA+TGG | - | chr3.4:64284381-64284400 | MS.gene38390:intron | 30.0% |
| !! | ATATTTAGGTTTTTCCACTC+AGG | - | chr3.4:64284437-64284456 | MS.gene38390:intron | 30.0% |
| !! | ATTAGGTAGAATTTCTGGTT+GGG | - | chr3.4:64282784-64282803 | MS.gene38390:CDS | 30.0% |
| !! | CCTTATTTCTAACATTGACT+TGG | - | chr3.4:64284846-64284865 | MS.gene38390:intron | 30.0% |
| !! | CTATTACAAAATGTTGGTTC+AGG | - | chr3.4:64284082-64284101 | MS.gene38390:intron | 30.0% |
| !! | CTTTTTGAACCATTCAAGTT+GGG | + | chr3.4:64285005-64285024 | None:intergenic | 30.0% |
| !! | GATTCTTTTTCATGCAGATT+TGG | - | chr3.4:64282366-64282385 | MS.gene38390:CDS | 30.0% |
| !! | TATTAGGTAGAATTTCTGGT+TGG | - | chr3.4:64282783-64282802 | MS.gene38390:CDS | 30.0% |
| !! | TTCATTTTTATCATGGACTG+AGG | + | chr3.4:64284361-64284380 | None:intergenic | 30.0% |
| !!! | CAAGTTGTCACTTTTCTTTA+AGG | + | chr3.4:64283359-64283378 | None:intergenic | 30.0% |
| AACAGCAACACACAAAGAAA+AGG | + | chr3.4:64283296-64283315 | None:intergenic | 35.0% | |
| AAGCGCAATTAGACAATCTT+AGG | + | chr3.4:64284766-64284785 | None:intergenic | 35.0% | |
| AATCATGTGAACAAAGCAAC+AGG | + | chr3.4:64283415-64283434 | None:intergenic | 35.0% | |
| ACAGCAACACACAAAGAAAA+GGG | + | chr3.4:64283295-64283314 | None:intergenic | 35.0% | |
| ACCATCTTAAAAATCGTGGT+TGG | - | chr3.4:64282993-64283012 | MS.gene38390:CDS | 35.0% | |
| ACGTCATTCAATTTCTTGGA+TGG | + | chr3.4:64284968-64284987 | None:intergenic | 35.0% | |
| ACTCTTTCGTGATAATCATC+AGG | - | chr3.4:64282683-64282702 | MS.gene38390:CDS | 35.0% | |
| AGAAAGAGAAGCCATGAATA+TGG | + | chr3.4:64283925-64283944 | None:intergenic | 35.0% | |
| ATTGTTACATAAGGGATTGC+AGG | + | chr3.4:64283965-64283984 | None:intergenic | 35.0% | |
| CAAGAAATTGAATGACGTGA+AGG | - | chr3.4:64284970-64284989 | MS.gene38390:intron | 35.0% | |
| CAATACACGTAGAAAGAATG+TGG | - | chr3.4:64285354-64285373 | MS.gene38390:CDS | 35.0% | |
| CAGATGAAACCTCAAAAAGA+AGG | - | chr3.4:64285151-64285170 | MS.gene38390:intron | 35.0% | |
| CCAAATAGAACTACGTGATA+TGG | + | chr3.4:64284173-64284192 | None:intergenic | 35.0% | |
| CCAACTTGAATGGTTCAAAA+AGG | - | chr3.4:64285003-64285022 | MS.gene38390:intron | 35.0% | |
| CCATCTTAAAAATCGTGGTT+GGG | - | chr3.4:64282994-64283013 | MS.gene38390:CDS | 35.0% | |
| CTTCACGTCATTCAATTTCT+TGG | + | chr3.4:64284972-64284991 | None:intergenic | 35.0% | |
| CTTTGCGCTAGAAAAATATC+TGG | + | chr3.4:64285541-64285560 | None:intergenic | 35.0% | |
| GCAACTAAGAATCAACAGAT+AGG | - | chr3.4:64285025-64285044 | MS.gene38390:intron | 35.0% | |
| GCTGAATACTATAGAAAAGG+CGG | - | chr3.4:64285244-64285263 | MS.gene38390:CDS | 35.0% | |
| GGCTGAAAACATGACTAATA+AGG | - | chr3.4:64284458-64284477 | MS.gene38390:intron | 35.0% | |
| GTCCTGTTAACAGAGAAATT+TGG | + | chr3.4:64282654-64282673 | None:intergenic | 35.0% | |
| GTCTAAACACTTCAAACAGT+TGG | - | chr3.4:64285291-64285310 | MS.gene38390:CDS | 35.0% | |
| TAAACACTTCAAACAGTTGG+AGG | - | chr3.4:64285294-64285313 | MS.gene38390:CDS | 35.0% | |
| TAGGATCAAAACAAGTTGCA+AGG | + | chr3.4:64283198-64283217 | None:intergenic | 35.0% | |
| TAGTATTCAGCAATAGCTAG+AGG | + | chr3.4:64285235-64285254 | None:intergenic | 35.0% | |
| TATTCACTTACCTGCATATG+TGG | + | chr3.4:64284534-64284553 | None:intergenic | 35.0% | |
| TATTCATGGCTTCTCTTTCT+AGG | - | chr3.4:64283925-64283944 | MS.gene38390:CDS | 35.0% | |
| TATTGAAGTGTGATAAGTGG+GGG | + | chr3.4:64283058-64283077 | None:intergenic | 35.0% | |
| TCGAAGCTTGTAGGATAATT+GGG | - | chr3.4:64284692-64284711 | MS.gene38390:intron | 35.0% | |
| TCTAAACACATCTGATAGTC+TGG | + | chr3.4:64283471-64283490 | None:intergenic | 35.0% | |
| TGAATTGCTTCATCGATCAT+TGG | + | chr3.4:64283444-64283463 | None:intergenic | 35.0% | |
| TGAGAACACAGATTCTATCT+TGG | - | chr3.4:64284317-64284336 | MS.gene38390:intron | 35.0% | |
| TGATAGTTTGGGAAGTAACA+TGG | - | chr3.4:64283382-64283401 | MS.gene38390:CDS | 35.0% | |
| TTCTATCTTGGAAATTCTCG+TGG | - | chr3.4:64284329-64284348 | MS.gene38390:intron | 35.0% | |
| TTGTTACATAAGGGATTGCA+GGG | + | chr3.4:64283964-64283983 | None:intergenic | 35.0% | |
| ! | AACCATTTTCTCCCAGTAAA+TGG | + | chr3.4:64285122-64285141 | None:intergenic | 35.0% |
| ! | ACCAGTAATTACATGCCTTT+TGG | - | chr3.4:64284258-64284277 | MS.gene38390:intron | 35.0% |
| ! | CCATATCACGTAGTTCTATT+TGG | - | chr3.4:64284170-64284189 | MS.gene38390:intron | 35.0% |
| ! | CCTTTTTGAACCATTCAAGT+TGG | + | chr3.4:64285006-64285025 | None:intergenic | 35.0% |
| ! | CTGATAATGAAGACATCGTT+TGG | - | chr3.4:64282460-64282479 | MS.gene38390:CDS | 35.0% |
| ! | GACAACTTGGATTGATAGTT+TGG | - | chr3.4:64283370-64283389 | MS.gene38390:intron | 35.0% |
| ! | TCCAAAAGGCATGTAATTAC+TGG | + | chr3.4:64284262-64284281 | None:intergenic | 35.0% |
| ! | TGACTACAGATTCTTGCTTT+TGG | - | chr3.4:64285386-64285405 | MS.gene38390:CDS | 35.0% |
| !! | AACTAAATCGGCTTGAACAT+TGG | + | chr3.4:64282568-64282587 | None:intergenic | 35.0% |
| !! | ACGATGGTATTGATCTTTCT+TGG | - | chr3.4:64282484-64282503 | MS.gene38390:CDS | 35.0% |
| !! | CTTCACTAAGTCAGTTTTGA+CGG | + | chr3.4:64283031-64283050 | None:intergenic | 35.0% |
| !! | GACTACAGATTCTTGCTTTT+GGG | - | chr3.4:64285387-64285406 | MS.gene38390:CDS | 35.0% |
| !! | TTCACTAAGTCAGTTTTGAC+GGG | + | chr3.4:64283030-64283049 | None:intergenic | 35.0% |
| !!! | CCGTTGATTTTTACTGGAAA+TGG | - | chr3.4:64284022-64284041 | MS.gene38390:intron | 35.0% |
| AAAGCAGCTATATTCGTTGG+TGG | - | chr3.4:64285557-64285576 | MS.gene38390:intron | 40.0% | |
| AAGACTATAGCAAGAAGGTC+AGG | + | chr3.4:64283777-64283796 | None:intergenic | 40.0% | |
| AATCAACGGAGTCGATAGAT+TGG | + | chr3.4:64284011-64284030 | None:intergenic | 40.0% | |
| AATCTCCTATCACCAACAAG+GGG | + | chr3.4:64284142-64284161 | None:intergenic | 40.0% | |
| ACTTCAAACAGTTGGAGGAA+TGG | - | chr3.4:64285299-64285318 | MS.gene38390:CDS | 40.0% | |
| AGACTATAGCAAGAAGGTCA+GGG | + | chr3.4:64283776-64283795 | None:intergenic | 40.0% | |
| AGGTCATTGTTCATGCTAGA+AGG | + | chr3.4:64283339-64283358 | None:intergenic | 40.0% | |
| CAATCTCCTATCACCAACAA+GGG | + | chr3.4:64284143-64284162 | None:intergenic | 40.0% | |
| CACCATTTACTGGGAGAAAA+TGG | - | chr3.4:64285117-64285136 | MS.gene38390:intron | 40.0% | |
| CATGACTAATAAGGACTCAC+TGG | - | chr3.4:64284467-64284486 | MS.gene38390:intron | 40.0% | |
| CGAAGCTTGTAGGATAATTG+GGG | - | chr3.4:64284693-64284712 | MS.gene38390:intron | 40.0% | |
| CTACAAAAACATGAGCTCAC+TGG | - | chr3.4:64285060-64285079 | MS.gene38390:intron | 40.0% | |
| GGTGCTTGGATATAAATCGT+GGG | - | chr3.4:64282910-64282929 | MS.gene38390:CDS | 40.0% | |
| GTCGAAGCTTGTAGGATAAT+TGG | - | chr3.4:64284691-64284710 | MS.gene38390:intron | 40.0% | |
| TAATGAAGAGCCTTGGAAGT+GGG | + | chr3.4:64284230-64284249 | None:intergenic | 40.0% | |
| TACACGTAGAAAGAATGTGG+AGG | - | chr3.4:64285357-64285376 | MS.gene38390:CDS | 40.0% | |
| TACATATGGCCCAACTTGAA+TGG | - | chr3.4:64284993-64285012 | MS.gene38390:intron | 40.0% | |
| TAGCAGCCCAAGATTTACAA+AGG | + | chr3.4:64282434-64282453 | None:intergenic | 40.0% | |
| TATGGAACTCAGCAACATCA+CGG | + | chr3.4:64285090-64285109 | None:intergenic | 40.0% | |
| TGCAGAAGACTATAGCAAGA+AGG | + | chr3.4:64283782-64283801 | None:intergenic | 40.0% | |
| TGCTATCAGGTTTCCGTTAT+CGG | + | chr3.4:64282940-64282959 | None:intergenic | 40.0% | |
| TGGTGCTTGGATATAAATCG+TGG | - | chr3.4:64282909-64282928 | MS.gene38390:CDS | 40.0% | |
| ! | AAAGCTGCACCTTCTTTTTG+AGG | + | chr3.4:64285163-64285182 | None:intergenic | 40.0% |
| ! | GAATGACGTGAAGGTACATA+TGG | - | chr3.4:64284979-64284998 | MS.gene38390:intron | 40.0% |
| ! | GTGTTTGAGATAGTCATGAG+AGG | - | chr3.4:64283552-64283571 | MS.gene38390:CDS | 40.0% |
| ! | TCTTGTTATCGCTCTAGTTG+TGG | - | chr3.4:64283643-64283662 | MS.gene38390:intron | 40.0% |
| ! | TTTCGTACCCGTTGGTTATA+TGG | - | chr3.4:64285181-64285200 | MS.gene38390:intron | 40.0% |
| ! | TTTTCATGCAGATTTGGCAG+TGG | - | chr3.4:64282372-64282391 | MS.gene38390:CDS | 40.0% |
| !! | CCCAACCACGATTTTTAAGA+TGG | + | chr3.4:64282997-64283016 | None:intergenic | 40.0% |
| !! | CTGGTATTAGTTTGCAGTTG+CGG | - | chr3.4:64284493-64284512 | MS.gene38390:intron | 40.0% |
| !! | TGGTATTAGTTTGCAGTTGC+GGG | - | chr3.4:64284494-64284513 | MS.gene38390:intron | 40.0% |
| !!! | TCGACTCCGTTGATTTTTAC+TGG | - | chr3.4:64284016-64284035 | MS.gene38390:intron | 40.0% |
| AACGGAAACCTGATAGCAGA+TGG | - | chr3.4:64282942-64282961 | MS.gene38390:CDS | 45.0% | |
| AATAAGGACTCACTGGCAAC+TGG | - | chr3.4:64284474-64284493 | MS.gene38390:intron | 45.0% | |
| ACAGTTGGAGGAATGGTTGA+TGG | - | chr3.4:64285306-64285325 | MS.gene38390:CDS | 45.0% | |
| CACACAATGTCGAAGCTTGT+AGG | - | chr3.4:64284683-64284702 | MS.gene38390:intron | 45.0% | |
| CAGTTGGAGGAATGGTTGAT+GGG | - | chr3.4:64285307-64285326 | MS.gene38390:CDS | 45.0% | |
| CGATCTGTAATGAAGAGCCT+TGG | + | chr3.4:64284237-64284256 | None:intergenic | 45.0% | |
| CGCAAAGCAGCTATATTCGT+TGG | - | chr3.4:64285554-64285573 | MS.gene38390:intron | 45.0% | |
| CTACAAGCTTCGACATTGTG+TGG | + | chr3.4:64284685-64284704 | None:intergenic | 45.0% | |
| GAACCAAATGTGATGCAGAG+TGG | + | chr3.4:64284118-64284137 | None:intergenic | 45.0% | |
| GCAATCTCCTATCACCAACA+AGG | + | chr3.4:64284144-64284163 | None:intergenic | 45.0% | |
| GCTTGGATATAAATCGTGGG+TGG | - | chr3.4:64282913-64282932 | MS.gene38390:CDS | 45.0% | |
| GGCTTGAACATTGGAAGAAG+TGG | + | chr3.4:64282559-64282578 | None:intergenic | 45.0% | |
| GTAATGAAGAGCCTTGGAAG+TGG | + | chr3.4:64284231-64284250 | None:intergenic | 45.0% | |
| GTGCATCTGCTCCATTTCTT+TGG | - | chr3.4:64283712-64283731 | MS.gene38390:intron | 45.0% | |
| TAGTCCCGCCATATAACCAA+CGG | + | chr3.4:64285192-64285211 | None:intergenic | 45.0% | |
| TCACACAAAACCCACTTCCA+AGG | - | chr3.4:64284217-64284236 | MS.gene38390:intron | 45.0% | |
| TTTACTGGAAATGGTCTCGG+AGG | - | chr3.4:64284031-64284050 | MS.gene38390:intron | 45.0% | |
| ! | ACATTTGGTTCACCCCTTGT+TGG | - | chr3.4:64284127-64284146 | MS.gene38390:intron | 45.0% |
| ! | AGTCATGTTTTCAGCCTGAG+TGG | + | chr3.4:64284454-64284473 | None:intergenic | 45.0% |
| ! | CTTTTGGGCACATGTTGAAG+AGG | - | chr3.4:64285402-64285421 | MS.gene38390:CDS | 45.0% |
| ! | GAAGACATCGTTTGGAACGA+TGG | - | chr3.4:64282468-64282487 | MS.gene38390:CDS | 45.0% |
| ! | TATATGGCGGGACTACTTAC+AGG | - | chr3.4:64285197-64285216 | MS.gene38390:CDS | 45.0% |
| ! | TGCGTTAAAGTGTCCCTCAT+CGG | + | chr3.4:64282862-64282881 | None:intergenic | 45.0% |
| !! | CTCACCTCACAAGGTTTTGT+GGG | + | chr3.4:64282821-64282840 | None:intergenic | 45.0% |
| !! | AAAAAAAAACAAAAAATTAA+AGG | - | chr3.4:64283247-64283266 | MS.gene38390:intron | 5.0% |
| !!! | AAGAATTTTTTAAATAATTA+TGG | + | chr3.4:64283886-64283905 | None:intergenic | 5.0% |
| AAGTCTCCACCAAGATCCGT+TGG | + | chr3.4:64282969-64282988 | None:intergenic | 50.0% | |
| AATCGTGGGTGGTCCGATAA+CGG | - | chr3.4:64282924-64282943 | MS.gene38390:CDS | 50.0% | |
| AGTCCCGCCATATAACCAAC+GGG | + | chr3.4:64285191-64285210 | None:intergenic | 50.0% | |
| AGTCTCCACCAAGATCCGTT+GGG | + | chr3.4:64282968-64282987 | None:intergenic | 50.0% | |
| AGTTTGCAGTTGCGGGAACT+AGG | - | chr3.4:64284501-64284520 | MS.gene38390:intron | 50.0% | |
| CAAGCCCACAAAACCTTGTG+AGG | - | chr3.4:64282814-64282833 | MS.gene38390:CDS | 50.0% | |
| CCACAAAACCTTGTGAGGTG+AGG | - | chr3.4:64282819-64282838 | MS.gene38390:CDS | 50.0% | |
| CGGGACTACTTACAGGAGAA+TGG | - | chr3.4:64285204-64285223 | MS.gene38390:CDS | 50.0% | |
| CGTCCACTCTGCATCACATT+TGG | - | chr3.4:64284112-64284131 | MS.gene38390:intron | 50.0% | |
| CTTGGAAATTCTCGTGGCGT+TGG | - | chr3.4:64284335-64284354 | MS.gene38390:intron | 50.0% | |
| GTTTGCAGTTGCGGGAACTA+GGG | - | chr3.4:64284502-64284521 | MS.gene38390:intron | 50.0% | |
| TCCCCACTATCAACCGATGA+GGG | - | chr3.4:64282846-64282865 | MS.gene38390:CDS | 50.0% | |
| TCCTCACACCCAACACTACT+GGG | - | chr3.4:64282884-64282903 | MS.gene38390:CDS | 50.0% | |
| TCGACATTGTGTGGCAGCTA+TGG | + | chr3.4:64284676-64284695 | None:intergenic | 50.0% | |
| ! | CCTCACCTCACAAGGTTTTG+TGG | + | chr3.4:64282822-64282841 | None:intergenic | 50.0% |
| ! | CGTACCCGTTGGTTATATGG+CGG | - | chr3.4:64285184-64285203 | MS.gene38390:intron | 50.0% |
| ! | GTACCCGTTGGTTATATGGC+GGG | - | chr3.4:64285185-64285204 | MS.gene38390:intron | 50.0% |
| !! | ATTGACTTGGCAGCAGCAAC+AGG | - | chr3.4:64284859-64284878 | MS.gene38390:intron | 50.0% |
| !! | GTCCCTCATCGGTTGATAGT+GGG | + | chr3.4:64282851-64282870 | None:intergenic | 50.0% |
| !! | GTTCACCCCTTGTTGGTGAT+AGG | - | chr3.4:64284134-64284153 | MS.gene38390:intron | 50.0% |
| !! | TCCCTCATCGGTTGATAGTG+GGG | + | chr3.4:64282850-64282869 | None:intergenic | 50.0% |
| !! | TGTCCCTCATCGGTTGATAG+TGG | + | chr3.4:64282852-64282871 | None:intergenic | 50.0% |
| ACACCCAACACTACTGGGCT+TGG | - | chr3.4:64282889-64282908 | MS.gene38390:CDS | 55.0% | |
| AGCACCAAGCCCAGTAGTGT+TGG | + | chr3.4:64282896-64282915 | None:intergenic | 55.0% | |
| AGGGTTGACGCCACATATGC+AGG | - | chr3.4:64284521-64284540 | MS.gene38390:intron | 55.0% | |
| CCTGATAGCAGATGGCCCAA+CGG | - | chr3.4:64282950-64282969 | MS.gene38390:CDS | 55.0% | |
| CTCCTCACACCCAACACTAC+TGG | - | chr3.4:64282883-64282902 | MS.gene38390:CDS | 55.0% | |
| GCACCAAGCCCAGTAGTGTT+GGG | + | chr3.4:64282895-64282914 | None:intergenic | 55.0% | |
| GGGACAATCCTCACCTCACA+AGG | + | chr3.4:64282830-64282849 | None:intergenic | 55.0% | |
| GTCCCCACTATCAACCGATG+AGG | - | chr3.4:64282845-64282864 | MS.gene38390:CDS | 55.0% | |
| ! | CAGTAGTGTTGGGTGTGAGG+AGG | + | chr3.4:64282885-64282904 | None:intergenic | 55.0% |
| ! | GTGCAGCTTTTCGTACCCGT+TGG | - | chr3.4:64285173-64285192 | MS.gene38390:intron | 55.0% |
| !! | ACACTACTGGGCTTGGTGCT+TGG | - | chr3.4:64282896-64282915 | MS.gene38390:CDS | 55.0% |
| CCGTTGGGCCATCTGCTATC+AGG | + | chr3.4:64282953-64282972 | None:intergenic | 60.0% | |
| GATGGCCCAACGGATCTTGG+TGG | - | chr3.4:64282960-64282979 | MS.gene38390:CDS | 60.0% | |
| GCAGATGGCCCAACGGATCT+TGG | - | chr3.4:64282957-64282976 | MS.gene38390:CDS | 60.0% | |
| ! | GCCCAGTAGTGTTGGGTGTG+AGG | + | chr3.4:64282888-64282907 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 64282234 | 64285690 | 64282234 | ID=MS.gene38390 |
| chr3.4 | mRNA | 64282234 | 64285690 | 64282234 | ID=MS.gene38390.t1;Parent=MS.gene38390 |
| chr3.4 | exon | 64285674 | 64285690 | 64285674 | ID=MS.gene38390.t1.exon1;Parent=MS.gene38390.t1 |
| chr3.4 | CDS | 64285674 | 64285690 | 64285674 | ID=cds.MS.gene38390.t1;Parent=MS.gene38390.t1 |
| chr3.4 | exon | 64285196 | 64285541 | 64285196 | ID=MS.gene38390.t1.exon2;Parent=MS.gene38390.t1 |
| chr3.4 | CDS | 64285196 | 64285541 | 64285196 | ID=cds.MS.gene38390.t1;Parent=MS.gene38390.t1 |
| chr3.4 | exon | 64283746 | 64283977 | 64283746 | ID=MS.gene38390.t1.exon3;Parent=MS.gene38390.t1 |
| chr3.4 | CDS | 64283746 | 64283977 | 64283746 | ID=cds.MS.gene38390.t1;Parent=MS.gene38390.t1 |
| chr3.4 | exon | 64283382 | 64283596 | 64283382 | ID=MS.gene38390.t1.exon4;Parent=MS.gene38390.t1 |
| chr3.4 | CDS | 64283382 | 64283596 | 64283382 | ID=cds.MS.gene38390.t1;Parent=MS.gene38390.t1 |
| chr3.4 | exon | 64282234 | 64283052 | 64282234 | ID=MS.gene38390.t1.exon5;Parent=MS.gene38390.t1 |
| chr3.4 | CDS | 64282234 | 64283052 | 64282234 | ID=cds.MS.gene38390.t1;Parent=MS.gene38390.t1 |
| Gene Sequence |
| Protein sequence |
