Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38609.t1 | TKY75106.1 | 70.7 | 393 | 111 | 3 | 1 | 393 | 1 | 389 | 3.40E-149 | 538.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38609.t1 | Q9S7T8 | 53.6 | 392 | 177 | 4 | 1 | 390 | 1 | 389 | 2.8e-112 | 406.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38609.t1 | A0A2K3MMT8 | 69.1 | 392 | 116 | 1 | 1 | 392 | 1 | 387 | 2.4e-149 | 538.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene38609 | PPI |
| MS.gene38609 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene38609 | PPI |
| MS.gene38609 | MS.gene065944 | PPI |
| MS.gene031697 | MS.gene38609 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38609.t1 | MTR_3g101190 | 73.028 | 393 | 25 | 3 | 1 | 393 | 1 | 312 | 0.0 | 540 |
| MS.gene38609.t1 | MTR_3g018740 | 68.193 | 393 | 116 | 4 | 1 | 391 | 1 | 386 | 0.0 | 524 |
| MS.gene38609.t1 | MTR_3g101010 | 66.921 | 393 | 126 | 2 | 1 | 393 | 1 | 389 | 0.0 | 520 |
| MS.gene38609.t1 | MTR_7g451890 | 63.427 | 391 | 143 | 0 | 3 | 393 | 12 | 402 | 5.27e-180 | 506 |
| MS.gene38609.t1 | MTR_4g045707 | 64.103 | 390 | 134 | 2 | 4 | 393 | 5 | 388 | 2.19e-179 | 504 |
| MS.gene38609.t1 | MTR_8g461160 | 66.667 | 387 | 129 | 0 | 5 | 391 | 6 | 392 | 3.92e-178 | 501 |
| MS.gene38609.t1 | MTR_3g101180 | 64.411 | 399 | 135 | 3 | 1 | 392 | 1 | 399 | 4.74e-178 | 501 |
| MS.gene38609.t1 | MTR_7g047780 | 63.776 | 392 | 140 | 2 | 3 | 393 | 12 | 402 | 7.97e-178 | 501 |
| MS.gene38609.t1 | MTR_7g050750 | 63.265 | 392 | 142 | 2 | 3 | 393 | 6 | 396 | 2.34e-177 | 499 |
| MS.gene38609.t1 | MTR_8g027395 | 64.450 | 391 | 131 | 3 | 3 | 393 | 15 | 397 | 1.01e-174 | 493 |
| MS.gene38609.t1 | MTR_7g050810 | 63.427 | 391 | 143 | 0 | 3 | 393 | 14 | 404 | 2.05e-174 | 492 |
| MS.gene38609.t1 | MTR_3g101130 | 63.198 | 394 | 139 | 3 | 1 | 393 | 1 | 389 | 1.68e-170 | 482 |
| MS.gene38609.t1 | MTR_3g101030 | 59.701 | 402 | 142 | 4 | 8 | 393 | 32 | 429 | 2.04e-165 | 470 |
| MS.gene38609.t1 | MTR_3g048000 | 61.598 | 388 | 124 | 5 | 6 | 392 | 28 | 391 | 3.20e-163 | 463 |
| MS.gene38609.t1 | MTR_2g046030 | 60.000 | 395 | 145 | 5 | 1 | 391 | 1 | 386 | 2.86e-161 | 458 |
| MS.gene38609.t1 | MTR_8g027420 | 61.735 | 392 | 129 | 5 | 3 | 393 | 4 | 375 | 4.18e-160 | 455 |
| MS.gene38609.t1 | MTR_4g088525 | 63.536 | 362 | 126 | 1 | 29 | 390 | 11 | 366 | 3.46e-159 | 452 |
| MS.gene38609.t1 | MTR_2g045980 | 59.747 | 395 | 146 | 5 | 1 | 391 | 1 | 386 | 3.70e-159 | 453 |
| MS.gene38609.t1 | MTR_3g015620 | 61.440 | 389 | 122 | 5 | 5 | 391 | 16 | 378 | 3.18e-155 | 442 |
| MS.gene38609.t1 | MTR_3g101050 | 60.622 | 386 | 129 | 6 | 8 | 391 | 32 | 396 | 6.50e-150 | 430 |
| MS.gene38609.t1 | MTR_4g088535 | 59.794 | 388 | 132 | 5 | 5 | 392 | 7 | 370 | 1.88e-149 | 428 |
| MS.gene38609.t1 | MTR_3g102920 | 56.510 | 384 | 123 | 6 | 13 | 392 | 66 | 409 | 1.13e-141 | 409 |
| MS.gene38609.t1 | MTR_3g101200 | 53.964 | 391 | 151 | 5 | 3 | 392 | 29 | 391 | 5.91e-127 | 371 |
| MS.gene38609.t1 | MTR_7g050830 | 57.278 | 316 | 104 | 2 | 3 | 298 | 14 | 318 | 1.28e-120 | 353 |
| MS.gene38609.t1 | MTR_3g100995 | 62.934 | 259 | 91 | 2 | 135 | 393 | 11 | 264 | 1.35e-112 | 330 |
| MS.gene38609.t1 | MTR_3g100010 | 53.918 | 319 | 99 | 2 | 27 | 312 | 37 | 340 | 1.07e-109 | 325 |
| MS.gene38609.t1 | MTR_3g015760 | 58.696 | 276 | 102 | 4 | 120 | 391 | 12 | 279 | 5.99e-104 | 308 |
| MS.gene38609.t1 | MTR_3g018747 | 62.069 | 261 | 81 | 4 | 131 | 390 | 9 | 252 | 9.99e-104 | 307 |
| MS.gene38609.t1 | MTR_3g114310 | 41.542 | 402 | 210 | 13 | 6 | 393 | 20 | 410 | 5.02e-86 | 267 |
| MS.gene38609.t1 | MTR_3g100520 | 60.714 | 224 | 71 | 3 | 172 | 393 | 1 | 209 | 4.86e-84 | 255 |
| MS.gene38609.t1 | MTR_3g111160 | 62.736 | 212 | 74 | 3 | 183 | 393 | 13 | 220 | 7.40e-83 | 252 |
| MS.gene38609.t1 | MTR_3g101110 | 58.051 | 236 | 71 | 3 | 134 | 367 | 71 | 280 | 5.88e-79 | 245 |
| MS.gene38609.t1 | MTR_2g046410 | 59.512 | 205 | 75 | 3 | 191 | 391 | 147 | 347 | 1.75e-77 | 243 |
| MS.gene38609.t1 | MTR_3g099970 | 62.245 | 196 | 57 | 2 | 131 | 326 | 20 | 198 | 4.22e-77 | 237 |
| MS.gene38609.t1 | MTR_3g101150 | 67.089 | 158 | 50 | 1 | 237 | 392 | 1 | 158 | 2.00e-66 | 208 |
| MS.gene38609.t1 | MTR_3g101020 | 53.968 | 189 | 58 | 2 | 205 | 393 | 1 | 160 | 6.02e-59 | 189 |
| MS.gene38609.t1 | MTR_3g111150 | 57.714 | 175 | 48 | 3 | 10 | 184 | 4 | 152 | 1.05e-58 | 189 |
| MS.gene38609.t1 | MTR_3g102870 | 58.385 | 161 | 66 | 1 | 194 | 353 | 1 | 161 | 1.38e-55 | 181 |
| MS.gene38609.t1 | MTR_3g100990 | 64.885 | 131 | 44 | 1 | 1 | 131 | 1 | 129 | 3.07e-47 | 168 |
| MS.gene38609.t1 | MTR_4g093550 | 58.140 | 86 | 34 | 1 | 5 | 90 | 6 | 89 | 5.19e-22 | 90.1 |
| MS.gene38609.t1 | MTR_3g101140 | 60.000 | 70 | 27 | 1 | 324 | 393 | 48 | 116 | 1.24e-19 | 84.3 |
| MS.gene38609.t1 | MTR_6g046890 | 66.667 | 60 | 20 | 0 | 29 | 88 | 21 | 80 | 2.52e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38609.t1 | AT1G47710 | 53.435 | 393 | 178 | 4 | 1 | 391 | 1 | 390 | 3.57e-144 | 415 |
| MS.gene38609.t1 | AT1G47710 | 53.435 | 393 | 178 | 4 | 1 | 391 | 28 | 417 | 2.60e-143 | 414 |
| MS.gene38609.t1 | AT2G25240 | 48.477 | 394 | 187 | 8 | 1 | 390 | 1 | 382 | 1.39e-117 | 347 |
| MS.gene38609.t1 | AT3G45220 | 45.050 | 404 | 194 | 6 | 1 | 390 | 1 | 390 | 5.03e-116 | 343 |
| MS.gene38609.t1 | AT2G26390 | 46.231 | 398 | 194 | 8 | 1 | 390 | 1 | 386 | 3.16e-114 | 338 |
| MS.gene38609.t1 | AT1G64030 | 41.878 | 394 | 202 | 6 | 1 | 390 | 1 | 371 | 5.26e-102 | 307 |
| MS.gene38609.t1 | AT1G62170 | 40.554 | 397 | 202 | 7 | 1 | 390 | 62 | 431 | 1.30e-100 | 305 |
| MS.gene38609.t1 | AT2G35580 | 43.467 | 398 | 176 | 11 | 1 | 390 | 15 | 371 | 9.21e-99 | 299 |
| MS.gene38609.t1 | AT2G14540 | 40.712 | 393 | 206 | 6 | 1 | 390 | 29 | 397 | 7.75e-98 | 297 |
| MS.gene38609.t1 | AT1G62170 | 37.442 | 430 | 202 | 8 | 1 | 390 | 62 | 464 | 2.01e-93 | 288 |
| MS.gene38609.t1 | AT1G64010 | 47.273 | 220 | 90 | 5 | 172 | 390 | 1 | 195 | 7.70e-64 | 203 |
| MS.gene38609.t1 | AT1G64010 | 46.569 | 204 | 83 | 5 | 188 | 390 | 3 | 181 | 4.45e-56 | 182 |
| MS.gene38609.t1 | AT1G62160 | 43.169 | 183 | 75 | 5 | 211 | 390 | 62 | 218 | 5.84e-35 | 129 |
| MS.gene38609.t1 | AT1G63280 | 50.000 | 118 | 55 | 2 | 128 | 243 | 5 | 120 | 2.57e-32 | 118 |
| MS.gene38609.t1 | AT1G51330 | 49.541 | 109 | 52 | 3 | 132 | 237 | 32 | 140 | 4.47e-26 | 104 |
| MS.gene38609.t1 | AT1G64020 | 32.787 | 122 | 79 | 3 | 1 | 121 | 1 | 120 | 5.33e-15 | 71.6 |
Find 73 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGAACTATACTCTTTAT+TGG | 0.166831 | 3.2:-84246426 | MS.gene38609:CDS |
| GAAATGATGGTGGGGTGTTC+AGG | 0.220765 | 3.2:-84246522 | MS.gene38609:CDS |
| GTTCTCCAAACAAGAATTTC+AGG | 0.221673 | 3.2:-84248069 | MS.gene38609:CDS |
| AGTCCATAAATTCACTTCTT+TGG | 0.232769 | 3.2:+84247151 | None:intergenic |
| TGGCCAAAGAAGTGAATTTA+TGG | 0.253715 | 3.2:-84247154 | MS.gene38609:CDS |
| AATTGTGGCTACTGATTATA+AGG | 0.260864 | 3.2:-84247793 | MS.gene38609:CDS |
| GGCTTCTGAATCAGAGTTCT+TGG | 0.266325 | 3.2:-84246793 | MS.gene38609:CDS |
| ATGATCAAAGAAGATTCTTC+TGG | 0.286141 | 3.2:-84246444 | MS.gene38609:CDS |
| CTTGTCCTGAAATTCTTGTT+TGG | 0.301922 | 3.2:+84248064 | None:intergenic |
| TCAGCTACAAAGTCTATTTC+AGG | 0.302912 | 3.2:+84246483 | None:intergenic |
| ATTAAGATGATCCGTGGATT+TGG | 0.324605 | 3.2:+84247941 | None:intergenic |
| CCTTGCCTCTCTTTCGTCAA+TGG | 0.325177 | 3.2:-84247861 | MS.gene38609:CDS |
| GGATGAAAAGTTCAATACTA+TGG | 0.335215 | 3.2:-84247024 | MS.gene38609:CDS |
| CTCATCTTTGATTGAGAAAG+TGG | 0.343131 | 3.2:-84246814 | MS.gene38609:CDS |
| TTCAGTTGATTTCAAAACTA+AGG | 0.359442 | 3.2:-84247760 | MS.gene38609:intron |
| AAGTGAAAGTAAACGACTTC+AGG | 0.375260 | 3.2:-84246749 | MS.gene38609:CDS |
| AGAAACAAGTTGAGAGGATA+AGG | 0.393608 | 3.2:+84247917 | None:intergenic |
| TCTGATGCTGCTCCCCTTGG+CGG | 0.402450 | 3.2:-84247885 | MS.gene38609:CDS |
| CAAAGGAAGGTTGAAGAGGA+AGG | 0.407458 | 3.2:+84247820 | None:intergenic |
| TTCTCTGATGCTGCTCCCCT+TGG | 0.414206 | 3.2:-84247888 | MS.gene38609:CDS |
| AGCACATGATGCAGCAGCTT+CGG | 0.414718 | 3.2:+84246548 | None:intergenic |
| AAATGATGGTGGGGTGTTCA+GGG | 0.419727 | 3.2:-84246521 | MS.gene38609:CDS |
| TACTGATTATAAGGCCACTT+TGG | 0.440391 | 3.2:-84247784 | MS.gene38609:CDS |
| TTTCTTCCAGATACAAAAGA+TGG | 0.444491 | 3.2:-84246840 | MS.gene38609:CDS |
| CTGATGCTGCTCCCCTTGGC+GGG | 0.446804 | 3.2:-84247884 | MS.gene38609:CDS |
| GTCAAACCACCAGGATAGAA+AGG | 0.456529 | 3.2:+84246657 | None:intergenic |
| TTCATTGAAGTAAAAGAAGA+AGG | 0.457204 | 3.2:-84246573 | MS.gene38609:CDS |
| GCAAATGCATTGTACTTCAA+AGG | 0.467497 | 3.2:-84247053 | MS.gene38609:CDS |
| GTTGATCTACCTTTCTATCC+TGG | 0.472853 | 3.2:-84246666 | MS.gene38609:CDS |
| CTTTGCCTTCCTTATAAACA+AGG | 0.477658 | 3.2:-84246894 | MS.gene38609:CDS |
| TCAAATGTGCTCAAGGAACT+AGG | 0.489223 | 3.2:-84246690 | MS.gene38609:CDS |
| TGATGTTGAGCACAACTTGA+AGG | 0.493358 | 3.2:+84248018 | None:intergenic |
| AAGAGAGGCAAGGCCCGCCA+AGG | 0.494015 | 3.2:+84247871 | None:intergenic |
| AAAGGAAGGTTGAAGAGGAA+GGG | 0.495469 | 3.2:+84247821 | None:intergenic |
| TCTCTTTCGTCAATGGTGCA+TGG | 0.506157 | 3.2:-84247854 | MS.gene38609:CDS |
| ATGTATGATCACCCAACAAA+AGG | 0.506228 | 3.2:+84246390 | None:intergenic |
| ATCATAGCTGCTGGCTCCGA+CGG | 0.531432 | 3.2:-84247999 | MS.gene38609:CDS |
| GTGCTCAACATCATAGCTGC+TGG | 0.532004 | 3.2:-84248008 | MS.gene38609:CDS |
| TCTCAATGGCAGCTCGGTCA+AGG | 0.533918 | 3.2:-84246976 | MS.gene38609:CDS |
| ATCATTCGTGCTGGTTACGA+AGG | 0.544379 | 3.2:+84246950 | None:intergenic |
| GATGTTGAGCACAACTTGAA+GGG | 0.546596 | 3.2:+84248019 | None:intergenic |
| TGAAACTTCAAATGTGCTCA+AGG | 0.549268 | 3.2:-84246697 | MS.gene38609:CDS |
| AGAGAGGCAAGGCCCGCCAA+GGG | 0.554030 | 3.2:+84247872 | None:intergenic |
| ATCATGTGCTTTAGAAATGA+TGG | 0.556106 | 3.2:-84246535 | MS.gene38609:CDS |
| TCACCTTCTCAATGGCAGCT+CGG | 0.558670 | 3.2:-84246982 | MS.gene38609:CDS |
| GAAATCAACTGAAGCCAAAG+TGG | 0.562346 | 3.2:+84247770 | None:intergenic |
| TGATCATAAACATGAAAGGA+TGG | 0.563748 | 3.2:+84246460 | None:intergenic |
| CATTGTACTTCAAAGGAGCA+TGG | 0.565962 | 3.2:-84247046 | MS.gene38609:CDS |
| ATTAAAACAATTCTTCCACC+CGG | 0.573606 | 3.2:-84247107 | MS.gene38609:CDS |
| GAGCACAACTTGAAGGGACA+AGG | 0.579072 | 3.2:+84248025 | None:intergenic |
| GATCTACCTTTCTATCCTGG+TGG | 0.579838 | 3.2:-84246663 | MS.gene38609:CDS |
| TCTTTGATCATAAACATGAA+AGG | 0.580563 | 3.2:+84246456 | None:intergenic |
| GATAAACTGATCATTCGTGC+TGG | 0.581522 | 3.2:+84246941 | None:intergenic |
| GATGATCCGTGGATTTGGAT+CGG | 0.583074 | 3.2:+84247946 | None:intergenic |
| AGTTGAGTCATCTATCGACC+CGG | 0.598161 | 3.2:+84247088 | None:intergenic |
| TGACCGAGCTGCCATTGAGA+AGG | 0.601435 | 3.2:+84246979 | None:intergenic |
| ATTGTACTTCAAAGGAGCAT+GGG | 0.603172 | 3.2:-84247045 | MS.gene38609:CDS |
| CACAGAAGAAACAAGTTGAG+AGG | 0.605430 | 3.2:+84247911 | None:intergenic |
| TAAGGAATTAAGATGATCCG+TGG | 0.630614 | 3.2:+84247935 | None:intergenic |
| GCTACAAAGTCTATTTCAGG+TGG | 0.631861 | 3.2:+84246486 | None:intergenic |
| ATGCACCATTGACGAAAGAG+AGG | 0.636350 | 3.2:+84247856 | None:intergenic |
| TCATTCGTGCTGGTTACGAA+GGG | 0.636600 | 3.2:+84246951 | None:intergenic |
| GAGAGGCAAGGCCCGCCAAG+GGG | 0.636835 | 3.2:+84247873 | None:intergenic |
| TTAAAACAATTCTTCCACCC+GGG | 0.646309 | 3.2:-84247106 | MS.gene38609:CDS |
| TTTCCTCCGATCCAAATCCA+CGG | 0.646951 | 3.2:-84247952 | MS.gene38609:CDS |
| TGTGCTTTAGAAATGATGGT+GGG | 0.662254 | 3.2:-84246531 | MS.gene38609:CDS |
| GTTGAGTCATCTATCGACCC+GGG | 0.669094 | 3.2:+84247089 | None:intergenic |
| AGCACAACTTGAAGGGACAA+GGG | 0.672805 | 3.2:+84248026 | None:intergenic |
| GATCCGTGGATTTGGATCGG+AGG | 0.683754 | 3.2:+84247949 | None:intergenic |
| ATGTGCTTTAGAAATGATGG+TGG | 0.710043 | 3.2:-84246532 | MS.gene38609:CDS |
| GTGCTTTAGAAATGATGGTG+GGG | 0.715918 | 3.2:-84246530 | MS.gene38609:CDS |
| CCATTGACGAAAGAGAGGCA+AGG | 0.723051 | 3.2:+84247861 | None:intergenic |
| GAGTCATCTATCGACCCGGG+TGG | 0.731376 | 3.2:+84247092 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAATTATTATTTTAT+TGG | + | chr3.2:84246834-84246853 | None:intergenic | 0.0% |
| !!! | ATTTTTCTTACTTTTTTTAA+CGG | + | chr3.2:84246928-84246947 | None:intergenic | 10.0% |
| !!! | CTTATATTTGATATTTTTAA+AGG | - | chr3.2:84247343-84247362 | MS.gene38609:intron | 10.0% |
| !! | AAAAAGTAAGAAAAATTCTT+TGG | - | chr3.2:84246932-84246951 | MS.gene38609:CDS | 15.0% |
| !!! | GAAATATTTTAGAAACATAA+AGG | + | chr3.2:84247928-84247947 | None:intergenic | 15.0% |
| !!! | ACAAATATTTTGTGATTTTG+AGG | + | chr3.2:84246442-84246461 | None:intergenic | 20.0% |
| !!! | CAAATATTTTGTGATTTTGA+GGG | + | chr3.2:84246441-84246460 | None:intergenic | 20.0% |
| !!! | TCAAATGATATTTTGAATCT+TGG | + | chr3.2:84247809-84247828 | None:intergenic | 20.0% |
| !!! | TTATCTTTTCCTTGTTTATA+AGG | + | chr3.2:84247647-84247666 | None:intergenic | 20.0% |
| !!! | TTTACTTTCACTTTTTTGTT+AGG | + | chr3.2:84247773-84247792 | None:intergenic | 20.0% |
| ! | TCTTTGATCATAAACATGAA+AGG | + | chr3.2:84248076-84248095 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAAAGAAGA+AGG | - | chr3.2:84247956-84247975 | MS.gene38609:CDS | 25.0% |
| !! | TATTTTATTGGAAATAGACC+AGG | + | chr3.2:84246822-84246841 | None:intergenic | 25.0% |
| !! | TTCAGTTGATTTCAAAACTA+AGG | - | chr3.2:84246769-84246788 | MS.gene38609:CDS | 25.0% |
| !!! | TCAATCATTTTTTGACATCA+AGG | + | chr3.2:84246883-84246902 | None:intergenic | 25.0% |
| AGTCCATAAATTCACTTCTT+TGG | + | chr3.2:84247381-84247400 | None:intergenic | 30.0% | |
| ATGATCAAAGAAGATTCTTC+TGG | - | chr3.2:84248085-84248104 | MS.gene38609:CDS | 30.0% | |
| ATTAAAACAATTCTTCCACC+CGG | - | chr3.2:84247422-84247441 | MS.gene38609:intron | 30.0% | |
| ATTATACCTGATAACAGAGA+AGG | + | chr3.2:84247229-84247248 | None:intergenic | 30.0% | |
| GGATGAAAAGTTCAATACTA+TGG | - | chr3.2:84247505-84247524 | MS.gene38609:intron | 30.0% | |
| GTATTCAACAAATTGATGAG+CGG | - | chr3.2:84247272-84247291 | MS.gene38609:intron | 30.0% | |
| TGATCATAAACATGAAAGGA+TGG | + | chr3.2:84248072-84248091 | None:intergenic | 30.0% | |
| TTTCTTCCAGATACAAAAGA+TGG | - | chr3.2:84247689-84247708 | MS.gene38609:intron | 30.0% | |
| ! | AATTGTGGCTACTGATTATA+AGG | - | chr3.2:84246736-84246755 | MS.gene38609:CDS | 30.0% |
| ! | ACCTTCCTTTGAAAAAATTG+TGG | - | chr3.2:84246721-84246740 | MS.gene38609:CDS | 30.0% |
| ! | TATGATTTTCACCTTCTCAA+TGG | - | chr3.2:84247539-84247558 | MS.gene38609:intron | 30.0% |
| ! | TCTGGAACTATACTCTTTAT+TGG | - | chr3.2:84248103-84248122 | MS.gene38609:CDS | 30.0% |
| ! | TGATGTTTTGCCAAAATAGA+TGG | - | chr3.2:84247175-84247194 | MS.gene38609:intron | 30.0% |
| ! | TTCTAACTTTGAAGAACCAA+AGG | + | chr3.2:84247054-84247073 | None:intergenic | 30.0% |
| ! | TTTTGTATCTGGAAGAAAGA+AGG | + | chr3.2:84247687-84247706 | None:intergenic | 30.0% |
| !! | ATCATGTGCTTTAGAAATGA+TGG | - | chr3.2:84247994-84248013 | MS.gene38609:CDS | 30.0% |
| !! | ATTTTTAAAGGCAAGTGAAG+TGG | - | chr3.2:84247355-84247374 | MS.gene38609:intron | 30.0% |
| !! | CAGTTTATCAGTGTTTTTGA+TGG | - | chr3.2:84247602-84247621 | MS.gene38609:intron | 30.0% |
| !! | CTTTTCCTTGTTTATAAGGA+AGG | + | chr3.2:84247643-84247662 | None:intergenic | 30.0% |
| !!! | AGTAGCCACAATTTTTTCAA+AGG | + | chr3.2:84246729-84246748 | None:intergenic | 30.0% |
| AAGTGAAAGTAAACGACTTC+AGG | - | chr3.2:84247780-84247799 | MS.gene38609:CDS | 35.0% | |
| ATTAAGATGATCCGTGGATT+TGG | + | chr3.2:84246591-84246610 | None:intergenic | 35.0% | |
| CTCATCTTTGATTGAGAAAG+TGG | - | chr3.2:84247715-84247734 | MS.gene38609:intron | 35.0% | |
| CTTGTCCTGAAATTCTTGTT+TGG | + | chr3.2:84246468-84246487 | None:intergenic | 35.0% | |
| CTTTGCCTTCCTTATAAACA+AGG | - | chr3.2:84247635-84247654 | MS.gene38609:intron | 35.0% | |
| GCAAATGCATTGTACTTCAA+AGG | - | chr3.2:84247476-84247495 | MS.gene38609:intron | 35.0% | |
| GTTCTCCAAACAAGAATTTC+AGG | - | chr3.2:84246460-84246479 | MS.gene38609:CDS | 35.0% | |
| TAAGGAATTAAGATGATCCG+TGG | + | chr3.2:84246597-84246616 | None:intergenic | 35.0% | |
| TATTGGAAATAGACCAGGAT+TGG | + | chr3.2:84246817-84246836 | None:intergenic | 35.0% | |
| TCAGCTACAAAGTCTATTTC+AGG | + | chr3.2:84248049-84248068 | None:intergenic | 35.0% | |
| TGAAACTTCAAATGTGCTCA+AGG | - | chr3.2:84247832-84247851 | MS.gene38609:CDS | 35.0% | |
| TGGACTGAAAAAGAGACAAA+TGG | - | chr3.2:84247395-84247414 | MS.gene38609:intron | 35.0% | |
| TGGCCAAAGAAGTGAATTTA+TGG | - | chr3.2:84247375-84247394 | MS.gene38609:intron | 35.0% | |
| TGTGTTATCGAGCAAAAAAG+AGG | - | chr3.2:84246979-84246998 | MS.gene38609:CDS | 35.0% | |
| TTAAAACAATTCTTCCACCC+GGG | - | chr3.2:84247423-84247442 | MS.gene38609:intron | 35.0% | |
| ! | AAGTGCTCAATCCTTTTGTT+GGG | - | chr3.2:84248128-84248147 | MS.gene38609:CDS | 35.0% |
| ! | AGAAACAAGTTGAGAGGATA+AGG | + | chr3.2:84246615-84246634 | None:intergenic | 35.0% |
| ! | ATTGTACTTCAAAGGAGCAT+GGG | - | chr3.2:84247484-84247503 | MS.gene38609:intron | 35.0% |
| ! | CTTTTCCTATAAACCAATCC+TGG | - | chr3.2:84246801-84246820 | MS.gene38609:CDS | 35.0% |
| ! | GCAAGACATACCATCTATTT+TGG | + | chr3.2:84247188-84247207 | None:intergenic | 35.0% |
| ! | TACTGATTATAAGGCCACTT+TGG | - | chr3.2:84246745-84246764 | MS.gene38609:CDS | 35.0% |
| ! | TTTTCAAAGGAAGGTTGAAG+AGG | + | chr3.2:84246716-84246735 | None:intergenic | 35.0% |
| !! | ATAGACCAGGATTGGTTTAT+AGG | + | chr3.2:84246809-84246828 | None:intergenic | 35.0% |
| !! | ATGTGCTTTAGAAATGATGG+TGG | - | chr3.2:84247997-84248016 | MS.gene38609:CDS | 35.0% |
| !! | TGTGCTTTAGAAATGATGGT+GGG | - | chr3.2:84247998-84248017 | MS.gene38609:CDS | 35.0% |
| !!! | GACAGAAGTTGTTGTTTTGT+AGG | + | chr3.2:84246557-84246576 | None:intergenic | 35.0% |
| !!! | GCCACAATTTTTTCAAAGGA+AGG | + | chr3.2:84246725-84246744 | None:intergenic | 35.0% |
| AAAGGAAGGTTGAAGAGGAA+GGG | + | chr3.2:84246711-84246730 | None:intergenic | 40.0% | |
| ACCTGATAACAGAGAAGGTA+AGG | + | chr3.2:84247224-84247243 | None:intergenic | 40.0% | |
| ACCTTACCTTCTCTGTTATC+AGG | - | chr3.2:84247220-84247239 | MS.gene38609:intron | 40.0% | |
| CATTGTACTTCAAAGGAGCA+TGG | - | chr3.2:84247483-84247502 | MS.gene38609:intron | 40.0% | |
| GAAATCAACTGAAGCCAAAG+TGG | + | chr3.2:84246762-84246781 | None:intergenic | 40.0% | |
| GATAAACTGATCATTCGTGC+TGG | + | chr3.2:84247591-84247610 | None:intergenic | 40.0% | |
| GATGTTGAGCACAACTTGAA+GGG | + | chr3.2:84246513-84246532 | None:intergenic | 40.0% | |
| GCTACAAAGTCTATTTCAGG+TGG | + | chr3.2:84248046-84248065 | None:intergenic | 40.0% | |
| GTTGATCTACCTTTCTATCC+TGG | - | chr3.2:84247863-84247882 | MS.gene38609:CDS | 40.0% | |
| TCAAATGTGCTCAAGGAACT+AGG | - | chr3.2:84247839-84247858 | MS.gene38609:CDS | 40.0% | |
| TCCTGGTGGTTTGACAAAAA+TGG | - | chr3.2:84247880-84247899 | MS.gene38609:CDS | 40.0% | |
| TGATGTTGAGCACAACTTGA+AGG | + | chr3.2:84246514-84246533 | None:intergenic | 40.0% | |
| ! | CAAGTGCTCAATCCTTTTGT+TGG | - | chr3.2:84248127-84248146 | MS.gene38609:CDS | 40.0% |
| ! | CACAGAAGAAACAAGTTGAG+AGG | + | chr3.2:84246621-84246640 | None:intergenic | 40.0% |
| ! | GAGAGTCCATCTTTTGTATC+TGG | + | chr3.2:84247698-84247717 | None:intergenic | 40.0% |
| !! | ACCATTTTTGTCAAACCACC+AGG | + | chr3.2:84247884-84247903 | None:intergenic | 40.0% |
| !! | GTGCTTTAGAAATGATGGTG+GGG | - | chr3.2:84247999-84248018 | MS.gene38609:CDS | 40.0% |
| !!! | TTGTTGTTTTGTAGGACCGT+CGG | + | chr3.2:84246549-84246568 | None:intergenic | 40.0% |
| AGCACAACTTGAAGGGACAA+GGG | + | chr3.2:84246506-84246525 | None:intergenic | 45.0% | |
| AGTTGAGTCATCTATCGACC+CGG | + | chr3.2:84247444-84247463 | None:intergenic | 45.0% | |
| ATGCACCATTGACGAAAGAG+AGG | + | chr3.2:84246676-84246695 | None:intergenic | 45.0% | |
| CAAAGGAAGGTTGAAGAGGA+AGG | + | chr3.2:84246712-84246731 | None:intergenic | 45.0% | |
| GAAGAACCAAAGGTTCTGTG+CGG | + | chr3.2:84247044-84247063 | None:intergenic | 45.0% | |
| GATCTACCTTTCTATCCTGG+TGG | - | chr3.2:84247866-84247885 | MS.gene38609:CDS | 45.0% | |
| GATGATCCGTGGATTTGGAT+CGG | + | chr3.2:84246586-84246605 | None:intergenic | 45.0% | |
| GGCTTCTGAATCAGAGTTCT+TGG | - | chr3.2:84247736-84247755 | MS.gene38609:intron | 45.0% | |
| GTCAAACCACCAGGATAGAA+AGG | + | chr3.2:84247875-84247894 | None:intergenic | 45.0% | |
| TCTCTTTCGTCAATGGTGCA+TGG | - | chr3.2:84246675-84246694 | MS.gene38609:CDS | 45.0% | |
| TTTCCTCCGATCCAAATCCA+CGG | - | chr3.2:84246577-84246596 | MS.gene38609:CDS | 45.0% | |
| !! | AAATGATGGTGGGGTGTTCA+GGG | - | chr3.2:84248008-84248027 | MS.gene38609:CDS | 45.0% |
| !! | ATCATTCGTGCTGGTTACGA+AGG | + | chr3.2:84247582-84247601 | None:intergenic | 45.0% |
| !! | TCATTCGTGCTGGTTACGAA+GGG | + | chr3.2:84247581-84247600 | None:intergenic | 45.0% |
| AGCACATGATGCAGCAGCTT+CGG | + | chr3.2:84247984-84248003 | None:intergenic | 50.0% | |
| CCATTGACGAAAGAGAGGCA+AGG | + | chr3.2:84246671-84246690 | None:intergenic | 50.0% | |
| CCTTGCCTCTCTTTCGTCAA+TGG | - | chr3.2:84246668-84246687 | MS.gene38609:CDS | 50.0% | |
| GAGCACAACTTGAAGGGACA+AGG | + | chr3.2:84246507-84246526 | None:intergenic | 50.0% | |
| GTGCTCAACATCATAGCTGC+TGG | - | chr3.2:84246521-84246540 | MS.gene38609:CDS | 50.0% | |
| GTTGAGTCATCTATCGACCC+GGG | + | chr3.2:84247443-84247462 | None:intergenic | 50.0% | |
| TCACCTTCTCAATGGCAGCT+CGG | - | chr3.2:84247547-84247566 | MS.gene38609:intron | 50.0% | |
| !! | GAAATGATGGTGGGGTGTTC+AGG | - | chr3.2:84248007-84248026 | MS.gene38609:CDS | 50.0% |
| AACCAAAGGTTCTGTGCGGC+AGG | + | chr3.2:84247040-84247059 | None:intergenic | 55.0% | |
| GATCCGTGGATTTGGATCGG+AGG | + | chr3.2:84246583-84246602 | None:intergenic | 55.0% | |
| TCTCAATGGCAGCTCGGTCA+AGG | - | chr3.2:84247553-84247572 | MS.gene38609:intron | 55.0% | |
| TGACCGAGCTGCCATTGAGA+AGG | + | chr3.2:84247553-84247572 | None:intergenic | 55.0% | |
| TTCCTGCCGCACAGAACCTT+TGG | - | chr3.2:84247035-84247054 | MS.gene38609:CDS | 55.0% | |
| TTCTCTGATGCTGCTCCCCT+TGG | - | chr3.2:84246641-84246660 | MS.gene38609:CDS | 55.0% | |
| !! | ATCATAGCTGCTGGCTCCGA+CGG | - | chr3.2:84246530-84246549 | MS.gene38609:CDS | 55.0% |
| GAGTCATCTATCGACCCGGG+TGG | + | chr3.2:84247440-84247459 | None:intergenic | 60.0% | |
| TCTGATGCTGCTCCCCTTGG+CGG | - | chr3.2:84246644-84246663 | MS.gene38609:CDS | 60.0% | |
| AAGAGAGGCAAGGCCCGCCA+AGG | + | chr3.2:84246661-84246680 | None:intergenic | 65.0% | |
| AGAGAGGCAAGGCCCGCCAA+GGG | + | chr3.2:84246660-84246679 | None:intergenic | 65.0% | |
| CTGATGCTGCTCCCCTTGGC+GGG | - | chr3.2:84246645-84246664 | MS.gene38609:CDS | 65.0% | |
| GAGAGGCAAGGCCCGCCAAG+GGG | + | chr3.2:84246659-84246678 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 84246398 | 84248153 | 84246398 | ID=MS.gene38609 |
| chr3.2 | mRNA | 84246398 | 84248153 | 84246398 | ID=MS.gene38609.t1;Parent=MS.gene38609 |
| chr3.2 | exon | 84247761 | 84248153 | 84247761 | ID=MS.gene38609.t1.exon1;Parent=MS.gene38609.t1 |
| chr3.2 | CDS | 84247761 | 84248153 | 84247761 | ID=cds.MS.gene38609.t1;Parent=MS.gene38609.t1 |
| chr3.2 | exon | 84246398 | 84247186 | 84246398 | ID=MS.gene38609.t1.exon2;Parent=MS.gene38609.t1 |
| chr3.2 | CDS | 84246398 | 84247186 | 84246398 | ID=cds.MS.gene38609.t1;Parent=MS.gene38609.t1 |
| Gene Sequence |
| Protein sequence |
