AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38652

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38652.t1 MTR_0019s0120 98.614 505 7 0 1 505 132 636 0.0 1046
MS.gene38652.t1 MTR_1g101370 78.643 501 101 3 1 496 119 618 0.0 843
MS.gene38652.t1 MTR_0019s0120 98.511 403 6 0 1 403 132 534 0.0 842
MS.gene38652.t1 MTR_8g432680 69.428 507 151 1 1 503 132 638 0.0 790
MS.gene38652.t1 MTR_7g076170 69.625 507 149 2 1 503 128 633 0.0 782
MS.gene38652.t1 MTR_8g100075 64.286 504 175 2 3 503 127 628 0.0 718
MS.gene38652.t1 MTR_4g098890 64.228 492 172 4 1 492 113 600 0.0 690
MS.gene38652.t1 MTR_8g055840 61.736 507 183 4 1 504 111 609 0.0 669
MS.gene38652.t1 MTR_5g040360 60.750 507 187 4 1 504 111 608 0.0 659
MS.gene38652.t1 MTR_3g040370 57.937 504 200 3 1 504 112 603 0.0 616
MS.gene38652.t1 MTR_7g006060 56.276 478 201 4 4 475 73 548 0.0 584
MS.gene38652.t1 MTR_8g071280 51.394 502 231 9 1 497 97 590 6.62e-177 510
MS.gene38652.t1 MTR_5g026930 50.202 496 234 8 5 495 103 590 1.57e-169 491
MS.gene38652.t1 MTR_8g432620 45.238 504 247 9 3 496 117 601 3.40e-162 473
MS.gene38652.t1 MTR_7g076150 45.328 503 246 9 3 495 104 587 2.49e-157 460
MS.gene38652.t1 MTR_5g080720 44.064 497 252 9 5 492 158 637 2.22e-150 444
MS.gene38652.t1 MTR_1g442840 45.021 482 238 9 1 471 10 475 5.00e-146 429
MS.gene38652.t1 MTR_1g442840 45.021 482 238 9 1 471 123 588 1.03e-144 429
MS.gene38652.t1 MTR_3g068990 43.662 497 254 10 5 492 186 665 1.51e-142 425
MS.gene38652.t1 MTR_1g075900 43.629 518 262 11 1 504 122 623 6.84e-142 422
MS.gene38652.t1 MTR_1g069785 42.607 514 265 10 1 500 93 590 1.27e-141 420
MS.gene38652.t1 MTR_7g076150 44.924 463 226 9 43 495 1 444 1.48e-141 415
MS.gene38652.t1 MTR_5g026930 50.990 404 186 7 5 403 103 499 1.39e-136 404
MS.gene38652.t1 MTR_1g029730 41.916 501 263 11 5 494 175 658 1.71e-136 409
MS.gene38652.t1 MTR_3g096480 43.418 509 250 15 3 495 290 776 1.72e-135 410
MS.gene38652.t1 MTR_5g080720 44.851 437 215 9 5 432 158 577 8.53e-133 397
MS.gene38652.t1 MTR_8g093880 43.030 495 244 17 3 479 320 794 3.04e-131 400
MS.gene38652.t1 MTR_5g021100 41.339 508 258 14 3 495 351 833 9.18e-129 395
MS.gene38652.t1 MTR_5g083150 41.373 510 252 14 1 495 121 598 1.49e-128 387
MS.gene38652.t1 MTR_3g088790 41.245 514 255 14 3 495 255 742 1.22e-127 389
MS.gene38652.t1 MTR_1g051055 41.420 507 259 12 5 496 121 604 3.86e-125 378
MS.gene38652.t1 MTR_8g076650 40.650 492 264 11 3 482 408 883 1.89e-124 385
MS.gene38652.t1 MTR_3g071530 42.227 476 238 14 8 471 180 630 1.50e-123 375
MS.gene38652.t1 MTR_1g022255 37.475 507 269 15 3 495 227 699 5.24e-104 327
MS.gene38652.t1 MTR_5g064080 33.966 527 295 16 5 499 169 674 1.08e-91 293
MS.gene38652.t1 MTR_3g074780 33.145 531 298 14 5 500 185 693 3.85e-91 293
MS.gene38652.t1 MTR_4g083030 33.533 501 290 15 5 484 117 595 2.20e-87 280
MS.gene38652.t1 MTR_1g022255 32.891 377 211 12 3 366 227 574 2.05e-56 198
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38652.t1 AT4G00750 67.188 512 157 4 1 504 123 631 0.0 765
MS.gene38652.t1 AT2G45750 67.913 508 156 2 3 503 116 623 0.0 764
MS.gene38652.t1 AT1G33170 62.302 504 185 2 1 500 137 639 0.0 708
MS.gene38652.t1 AT4G10440 64.158 505 175 4 1 501 120 622 0.0 707
MS.gene38652.t1 AT1G26850 62.103 504 186 3 1 501 113 614 0.0 674
MS.gene38652.t1 AT1G26850 62.103 504 186 3 1 501 113 614 0.0 674
MS.gene38652.t1 AT4G18030 61.167 497 190 3 1 497 112 605 0.0 654
MS.gene38652.t1 AT2G43200 53.564 491 219 5 4 490 121 606 0.0 557
MS.gene38652.t1 AT2G43200 53.564 491 219 5 4 490 121 606 0.0 557
MS.gene38652.t1 AT1G31850 49.802 506 235 11 1 497 103 598 1.04e-177 513
MS.gene38652.t1 AT1G31850 49.802 506 235 11 1 497 103 598 1.04e-177 513
MS.gene38652.t1 AT1G31850 49.802 506 235 11 1 497 103 598 1.04e-177 513
MS.gene38652.t1 AT1G31850 49.802 506 235 11 1 497 103 598 1.04e-177 513
MS.gene38652.t1 AT1G26850 60.459 392 150 3 1 389 113 502 3.15e-176 505
MS.gene38652.t1 AT4G19120 48.532 511 248 8 1 504 97 599 8.63e-173 500
MS.gene38652.t1 AT4G19120 48.532 511 248 8 1 504 97 599 8.63e-173 500
MS.gene38652.t1 AT4G00740 45.383 509 251 7 2 501 109 599 3.00e-161 471
MS.gene38652.t1 AT4G00740 45.383 509 251 7 2 501 109 599 3.00e-161 471
MS.gene38652.t1 AT2G39750 44.511 501 246 11 5 493 210 690 3.50e-150 446
MS.gene38652.t1 AT1G04430 43.678 522 254 11 1 500 115 618 4.25e-145 430
MS.gene38652.t1 AT1G04430 43.678 522 254 11 1 500 115 618 4.25e-145 430
MS.gene38652.t1 AT1G04430 43.678 522 254 11 1 500 115 618 4.25e-145 430
MS.gene38652.t1 AT5G06050 42.545 503 261 10 5 497 182 666 2.43e-143 427
MS.gene38652.t1 AT4G14360 45.021 482 238 9 1 471 107 572 2.71e-142 422
MS.gene38652.t1 AT4G14360 45.021 482 238 9 1 471 107 572 2.71e-142 422
MS.gene38652.t1 AT4G19120 50.000 410 191 7 1 403 97 499 1.05e-141 417
MS.gene38652.t1 AT5G14430 43.969 514 257 11 1 499 111 608 5.21e-141 419
MS.gene38652.t1 AT3G23300 42.300 513 267 10 1 500 110 606 1.37e-138 413
MS.gene38652.t1 AT3G23300 42.300 513 267 10 1 500 110 606 1.37e-138 413
MS.gene38652.t1 AT5G14430 43.385 514 260 11 1 499 111 608 1.49e-138 413
MS.gene38652.t1 AT1G77260 41.884 499 260 11 5 493 176 654 1.46e-137 412
MS.gene38652.t1 AT3G10200 41.420 507 258 11 5 496 107 589 3.34e-131 393
MS.gene38652.t1 AT5G04060 40.557 503 266 7 5 496 118 598 9.52e-131 392
MS.gene38652.t1 AT2G34300 41.426 519 258 14 3 502 272 763 2.44e-129 394
MS.gene38652.t1 AT2G34300 41.426 519 258 14 3 502 272 763 2.44e-129 394
MS.gene38652.t1 AT2G34300 41.426 519 258 14 3 502 272 763 2.44e-129 394
MS.gene38652.t1 AT5G64030 41.339 508 262 13 3 495 330 816 6.01e-129 395
MS.gene38652.t1 AT3G56080 40.354 508 257 13 1 495 134 608 3.98e-128 386
MS.gene38652.t1 AT1G29470 40.784 510 268 14 3 499 272 760 6.48e-128 390
MS.gene38652.t1 AT1G29470 40.784 510 268 14 3 499 272 760 6.48e-128 390
MS.gene38652.t1 AT3G51070 42.074 511 254 17 3 495 403 889 8.68e-128 394
MS.gene38652.t1 AT2G40280 40.514 506 256 15 1 495 110 581 2.36e-126 381
MS.gene38652.t1 AT3G10200 41.458 480 241 11 5 468 107 562 1.94e-122 371
MS.gene38652.t1 AT3G56080 41.176 442 222 12 1 429 134 550 3.17e-112 343
MS.gene38652.t1 AT3G51070 43.792 443 215 15 3 429 403 827 1.10e-111 350
MS.gene38652.t1 AT1G19430 38.067 507 266 15 3 495 250 722 1.10e-103 326
MS.gene38652.t1 AT1G19430 38.067 507 266 15 3 495 250 722 1.10e-103 326
MS.gene38652.t1 AT1G13860 31.836 512 297 11 5 484 101 592 1.69e-90 288
MS.gene38652.t1 AT1G13860 31.836 512 297 11 5 484 101 592 1.69e-90 288
MS.gene38652.t1 AT1G13860 31.836 512 297 11 5 484 101 592 1.69e-90 288
MS.gene38652.t1 AT1G13860 31.836 512 297 11 5 484 101 592 1.69e-90 288
MS.gene38652.t1 AT1G78240 33.786 515 282 15 16 494 187 678 5.18e-89 287
MS.gene38652.t1 AT1G78240 33.786 515 282 15 16 494 187 678 5.18e-89 287
MS.gene38652.t1 AT2G03480 31.041 509 281 11 5 484 117 584 5.21e-84 271
MS.gene38652.t1 AT2G03480 31.737 501 299 12 5 484 117 595 1.91e-83 270
MS.gene38652.t1 AT1G13860 32.898 459 252 12 55 484 5 436 2.14e-82 263
MS.gene38652.t1 AT1G19430 33.867 375 206 12 3 364 250 595 7.39e-57 199
MS.gene38652.t1 AT2G03480 33.466 251 153 3 5 246 117 362 1.26e-45 165

Find 132 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGACATGAATGCTTATT+TGG 0.073772 6.2:-55782593 MS.gene38652:CDS
CACTTGTTAAATATCCTATT+TGG 0.102129 6.2:-55782555 MS.gene38652:CDS
TTTAGCTACATTCTCAATTT+TGG 0.149493 6.2:+55784700 None:intergenic
CTTCTTTGTTGGACACTTTA+GGG 0.225235 6.2:+55782806 None:intergenic
AGAGGTGTTCCTGCAATTAT+TGG 0.248757 6.2:-55785436 MS.gene38652:CDS
TGATTGGAATGTATCATAAT+TGG 0.257260 6.2:-55782468 MS.gene38652:intron
TTTAAGATTTCATGTTTCTT+AGG 0.258970 6.2:+55790392 None:intergenic
ATTTCAAAGGGGACCATTAA+AGG 0.260047 6.2:-55782724 MS.gene38652:CDS
TCTTCTTTGTTGGACACTTT+AGG 0.260669 6.2:+55782805 None:intergenic
TATTTGCTGTGAAGAAATAT+TGG 0.264293 6.2:-55781807 MS.gene38652:CDS
ATTGCAAATTCACTCAAAAT+AGG 0.265035 6.2:-55784607 MS.gene38652:CDS
CTTATTCCATGGCCTGAATA+TGG 0.267383 6.2:-55785346 MS.gene38652:intron
AGCACATACCATGCTTTATC+AGG 0.274972 6.2:+55784560 None:intergenic
ACCTGAAATTTCTTCTTTGT+TGG 0.284477 6.2:+55782795 None:intergenic
TTATTCTGCTCTTGGCAAAA+AGG 0.302945 6.2:+55784584 None:intergenic
CAATTCGCTGGAAGAAATAT+TGG 0.311579 6.2:-55784766 MS.gene38652:CDS
CTCAAATGACAATACTATTT+AGG 0.311881 6.2:-55781773 None:intergenic
TTGAGGTGTGACACCTTTAA+TGG 0.321435 6.2:+55782711 None:intergenic
GATAAGTATATTGATGATAT+TGG 0.322381 6.2:-55790182 MS.gene38652:CDS
AATAAGCATTCATGTCTAAT+AGG 0.333573 6.2:+55782596 None:intergenic
GAGGTGTTCCTGCAATTATT+GGG 0.334013 6.2:-55785435 MS.gene38652:CDS
GTTCGAACTGCTGTTGATAC+TGG 0.335844 6.2:-55790131 MS.gene38652:CDS
CTAATTATTACACTTCCTTC+TGG 0.339638 6.2:+55781937 None:intergenic
TTTCAAGAGGCCCATCTTCA+TGG 0.344644 6.2:+55781842 None:intergenic
AGAAAGGTGATATTGCTATT+TGG 0.345270 6.2:-55784652 MS.gene38652:CDS
TCCAACAAAGAAGAAATTTC+AGG 0.345485 6.2:-55782796 MS.gene38652:CDS
CAATATTTCTTCCAGCGAAT+TGG 0.347489 6.2:+55784767 None:intergenic
ACTTGTTAAATATCCTATTT+GGG 0.348847 6.2:-55782554 MS.gene38652:CDS
ATGTATACCTGTCATTATAA+AGG 0.354957 6.2:+55782287 None:intergenic
ATGTATGCAGGTTGCTAGTT+GGG 0.358547 6.2:-55785545 MS.gene38652:intron
TAGAGATGATGTAGATATAT+TGG 0.374420 6.2:-55781917 MS.gene38652:CDS
TTAGACATGAATGCTTATTT+GGG 0.377741 6.2:-55782592 MS.gene38652:CDS
AATAGTACTATACCATATTC+AGG 0.377937 6.2:+55785334 None:intergenic
ACACAGAATCAGCATGAATT+AGG 0.382074 6.2:+55782314 None:intergenic
ACCACATTCATAACCCAAAT+AGG 0.383835 6.2:+55782541 None:intergenic
TCTCAAAAGACAATCAACTA+TGG 0.388474 6.2:-55782684 MS.gene38652:CDS
TTCTGCGTCCTGGTGGGTAT+TGG 0.388580 6.2:-55784805 MS.gene38652:CDS
TATCAGGATTATTCTGCTCT+TGG 0.402241 6.2:+55784576 None:intergenic
GGTGGGTATTGGATTCTATC+TGG 0.410013 6.2:-55784794 MS.gene38652:CDS
ATAAGTATATTGATGATATT+GGG 0.413613 6.2:-55790181 MS.gene38652:CDS
GTATCAACTTTAGCTTGAAT+AGG 0.420482 6.2:+55782517 None:intergenic
TTCTTGTAACCGTTTGGTGC+TGG 0.420744 6.2:+55790359 None:intergenic
TGAATTAGGTCATAAGTTCT+AGG 0.424421 6.2:+55782328 None:intergenic
AAAGGATTCTTGTAACCGTT+TGG 0.425376 6.2:+55790353 None:intergenic
TGTACCTTACCGTCATTTAA+CGG 0.426177 6.2:-55790291 MS.gene38652:CDS
GTTCAATTTGCTCTTGAAAG+AGG 0.426870 6.2:-55785454 MS.gene38652:CDS
TCTGCTTTGTAGATGTGAAT+TGG 0.430180 6.2:-55781995 MS.gene38652:intron
AACAATCAACTTGGAAAAGC+TGG 0.441002 6.2:-55782631 MS.gene38652:CDS
ATGTAGCTAAAAGCCTTTGT+TGG 0.443086 6.2:-55784688 MS.gene38652:CDS
TTGTTGGACACTTTAGGGAG+TGG 0.452460 6.2:+55782811 None:intergenic
GTTCTCGTTGTCTTATTCCA+TGG 0.453451 6.2:-55785357 MS.gene38652:CDS
ATATATGAAAGAGGGTTGAT+TGG 0.453552 6.2:-55782484 MS.gene38652:CDS
GGAAGAAATATTGGAAAGGA+TGG 0.455736 6.2:-55784757 MS.gene38652:CDS
TGTTTAGCCTTTATAATGAC+AGG 0.459506 6.2:-55782294 MS.gene38652:intron
ATGTCTCTACTTGTGGGCCA+TGG 0.459713 6.2:+55790329 None:intergenic
GCCATGTCAAAGGCTCTAGA+AGG 0.463079 6.2:+55785385 None:intergenic
GCAAAGACCCCAATAATTGC+AGG 0.463464 6.2:+55785427 None:intergenic
ATGGTCCCCTTTGAAATCCT+AGG 0.473543 6.2:+55782730 None:intergenic
GGTGGTACTATGTTTCCTAA+TGG 0.474022 6.2:-55790209 MS.gene38652:CDS
GGAACTTATCACCGTCAAAA+CGG 0.476216 6.2:+55790243 None:intergenic
CAAATTGTGGACCATGAAGA+TGG 0.476768 6.2:-55781853 MS.gene38652:CDS
TTGGAAAAGCTGGTAGATAC+AGG 0.480976 6.2:-55782621 MS.gene38652:CDS
AAAGAGCATAATCAATGGCT+TGG 0.481691 6.2:-55781887 MS.gene38652:CDS
CATAATCAATGGCTTGGAAT+GGG 0.484368 6.2:-55781881 MS.gene38652:CDS
ATATACTTATCAGCACCATT+AGG 0.486668 6.2:+55790194 None:intergenic
CCTTTGTTGGAATAAAATAG+TGG 0.487141 6.2:-55784675 MS.gene38652:CDS
TATTTCTTCCAGCGAATTGG+TGG 0.489851 6.2:+55784770 None:intergenic
CTACTTGTGGGCCATGGGAA+AGG 0.490397 6.2:+55790335 None:intergenic
CAAGCTAAAGTTGATACACT+TGG 0.491094 6.2:-55782511 MS.gene38652:CDS
TAGTACCACCACCAGGAAAA+CGG 0.493127 6.2:+55790222 None:intergenic
AAGTTGATTAATCTTGAAGA+TGG 0.495272 6.2:-55790158 MS.gene38652:CDS
TATCTGGTCCACCAATTCGC+TGG 0.497419 6.2:-55784778 MS.gene38652:CDS
CCAAGCCATGTCTCTACTTG+TGG 0.501584 6.2:+55790322 None:intergenic
TCCTATTTGGGTTATGAATG+TGG 0.505514 6.2:-55782542 MS.gene38652:CDS
TATGTATGCAGGTTGCTAGT+TGG 0.506720 6.2:-55785546 MS.gene38652:intron
AAAAGTTTCTCTCTTTCAAG+AGG 0.510531 6.2:+55781829 None:intergenic
ACCCCACCTAGGATTTCAAA+GGG 0.515316 6.2:-55782736 MS.gene38652:CDS
AACAGTGTCAATTGCACCAA+GGG 0.515618 6.2:-55785494 MS.gene38652:CDS
CTAAATAGTATTGTCATTTG+AGG 0.516055 6.2:+55781774 None:intergenic
CCCCTTTGAAATCCTAGGTG+GGG 0.516176 6.2:+55782735 None:intergenic
TGTCTCTACTTGTGGGCCAT+GGG 0.516352 6.2:+55790330 None:intergenic
TGGAATAAAATAGTGGAGAA+AGG 0.516837 6.2:-55784668 MS.gene38652:CDS
GCATAATCAATGGCTTGGAA+TGG 0.517234 6.2:-55781882 MS.gene38652:CDS
TCAAAGGCTCTAGAAGGAAA+AGG 0.519034 6.2:+55785391 None:intergenic
ACTGCTGTTGATACTGGCTG+TGG 0.520180 6.2:-55790125 MS.gene38652:CDS
CAGGTGGGGAATTAAACAAA+TGG 0.520250 6.2:-55782777 MS.gene38652:CDS
ACATATTGCTAGAGATGGAT+AGG 0.520899 6.2:-55781969 MS.gene38652:CDS
CAAGCCATGTCTCTACTTGT+GGG 0.523142 6.2:+55790323 None:intergenic
TCTTAGGACAGTGTCGTTCG+CGG 0.526064 6.2:+55790408 None:intergenic
GACATGAATGCTTATTTGGG+TGG 0.530858 6.2:-55782589 MS.gene38652:CDS
GGAAGACATATTGCTAGAGA+TGG 0.531377 6.2:-55781974 MS.gene38652:CDS
ATAGTATTGTCATTTGAGGC+AGG 0.531671 6.2:+55781778 None:intergenic
TCCCCTTTGAAATCCTAGGT+GGG 0.532337 6.2:+55782734 None:intergenic
TCCACCGTTAAATGACGGTA+AGG 0.535817 6.2:+55790287 None:intergenic
TATGTCACGTGATAGTAGAT+AGG 0.536542 6.2:+55785519 None:intergenic
AGGAAAAGGTAATCTCTTTG+AGG 0.553368 6.2:+55785405 None:intergenic
TGTATGCAGGTTGCTAGTTG+GGG 0.554334 6.2:-55785544 MS.gene38652:intron
ACTATACCATATTCAGGCCA+TGG 0.555807 6.2:+55785340 None:intergenic
TGTGCTTCATGAGTATCCCT+TGG 0.555852 6.2:+55785478 None:intergenic
AAAGTAAAGAGCATAATCAA+TGG 0.558091 6.2:-55781892 MS.gene38652:CDS
CTTGGAGCAATATATGAAAG+AGG 0.559920 6.2:-55782493 MS.gene38652:CDS
CTGCTGTTGATACTGGCTGT+GGG 0.566827 6.2:-55790124 MS.gene38652:CDS
TCCTTCTAGAGCCTTTGACA+TGG 0.567002 6.2:-55785386 MS.gene38652:CDS
CGCTGGAAGAAATATTGGAA+AGG 0.570543 6.2:-55784761 MS.gene38652:CDS
AGAACAATGTGCCATGTCAA+AGG 0.573579 6.2:+55785375 None:intergenic
CCACAAGTAGAGACATGGCT+TGG 0.575701 6.2:-55790322 MS.gene38652:CDS
CAAAGAAGAAATTTCAGGTG+GGG 0.578360 6.2:-55782791 MS.gene38652:CDS
AACCCCACCTAGGATTTCAA+AGG 0.579195 6.2:-55782737 MS.gene38652:CDS
GAAGAAATATTGGAAAGGAT+GGG 0.586262 6.2:-55784756 MS.gene38652:CDS
AACAAAGAAGAAATTTCAGG+TGG 0.587726 6.2:-55782793 MS.gene38652:CDS
ATAGAATTCTGCGTCCTGGT+GGG 0.592491 6.2:-55784811 MS.gene38652:CDS
GATAGAATTCTGCGTCCTGG+TGG 0.593564 6.2:-55784812 MS.gene38652:CDS
AGAATAATCCTGATAAAGCA+TGG 0.595250 6.2:-55784568 MS.gene38652:intron
TGTCGTGTTCCAGCACCAAA+CGG 0.596625 6.2:-55790368 MS.gene38652:CDS
GGAATGGGAGAGTCAAATTG+TGG 0.598742 6.2:-55781866 MS.gene38652:CDS
ATTGTCATTTGAGGCAGGAG+AGG 0.601191 6.2:+55781783 None:intergenic
AAATTGTGGACCATGAAGAT+GGG 0.601433 6.2:-55781852 MS.gene38652:CDS
GATAGGATTCTTAGACCAGA+AGG 0.608500 6.2:-55781952 MS.gene38652:CDS
GTTACAAGAATCCTTTCCCA+TGG 0.609267 6.2:-55790346 MS.gene38652:CDS
GTTGATAGAATTCTGCGTCC+TGG 0.611474 6.2:-55784815 MS.gene38652:CDS
AGGTGTTCCTGCAATTATTG+GGG 0.614069 6.2:-55785434 MS.gene38652:CDS
GTCCCCTTTGAAATCCTAGG+TGG 0.627138 6.2:+55782733 None:intergenic
ACAAAGAAGAAATTTCAGGT+GGG 0.634673 6.2:-55782792 MS.gene38652:CDS
TTGGAGCAATATATGAAAGA+GGG 0.636053 6.2:-55782492 MS.gene38652:CDS
TGCTGTTGATACTGGCTGTG+GGG 0.658528 6.2:-55790123 MS.gene38652:intron
GACTAAAATCAACCCCACCT+AGG 0.665392 6.2:-55782747 MS.gene38652:CDS
ACCTTACCGTCATTTAACGG+TGG 0.667967 6.2:-55790288 MS.gene38652:CDS
GGAAACATAGTACCACCACC+AGG 0.673211 6.2:+55790215 None:intergenic
ATGGCCCACAAGTAGAGACA+TGG 0.675055 6.2:-55790327 MS.gene38652:CDS
GATAGAATCCAATACCCACC+AGG 0.684534 6.2:+55784797 None:intergenic
TAACAGTGTCAATTGCACCA+AGG 0.686736 6.2:-55785495 MS.gene38652:CDS
CCCCACCTAGGATTTCAAAG+GGG 0.775769 6.2:-55782735 MS.gene38652:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr6.2 gene 55781774 55790438 55781774 ID=MS.gene38652
chr6.2 mRNA 55781774 55790438 55781774 ID=MS.gene38652.t1;Parent=MS.gene38652
chr6.2 exon 55790124 55790438 55790124 ID=MS.gene38652.t1.exon1;Parent=MS.gene38652.t1
chr6.2 CDS 55790124 55790438 55790124 ID=cds.MS.gene38652.t1;Parent=MS.gene38652.t1
chr6.2 exon 55785347 55785557 55785347 ID=MS.gene38652.t1.exon2;Parent=MS.gene38652.t1
chr6.2 CDS 55785347 55785557 55785347 ID=cds.MS.gene38652.t1;Parent=MS.gene38652.t1
chr6.2 exon 55784569 55784857 55784569 ID=MS.gene38652.t1.exon3;Parent=MS.gene38652.t1
chr6.2 CDS 55784569 55784857 55784569 ID=cds.MS.gene38652.t1;Parent=MS.gene38652.t1
chr6.2 exon 55782469 55782861 55782469 ID=MS.gene38652.t1.exon4;Parent=MS.gene38652.t1
chr6.2 CDS 55782469 55782861 55782469 ID=cds.MS.gene38652.t1;Parent=MS.gene38652.t1
chr6.2 exon 55782295 55782372 55782295 ID=MS.gene38652.t1.exon5;Parent=MS.gene38652.t1
chr6.2 CDS 55782295 55782372 55782295 ID=cds.MS.gene38652.t1;Parent=MS.gene38652.t1
chr6.2 exon 55781774 55782005 55781774 ID=MS.gene38652.t1.exon6;Parent=MS.gene38652.t1
chr6.2 CDS 55781774 55782005 55781774 ID=cds.MS.gene38652.t1;Parent=MS.gene38652.t1
Gene Sequence

>MS.gene38652

ATGATATACCGCGAACGACACTGTCCTAAGAAACATGAAATCTTAAAGTGTCGTGTTCCAGCACCAAACGGTTACAAGAATCCTTTCCCATGGCCCACAAGTAGAGACATGGCTTGGTATGCAAATGTACCTTACCGTCATTTAACGGTGGAAAAAGCTGGTCAAAATTGGATCCGTTTTGACGGTGATAAGTTCCGTTTTCCTGGTGGTGGTACTATGTTTCCTAATGGTGCTGATAAGTATATTGATGATATTGGGAAGTTGATTAATCTTGAAGATGGTTCTGTTCGAACTGCTGTTGATACTGGCTGTGGGGTAAGCGTTTCTCTTTTCTATCTCTTTCTCTGTTTGTCACTATGAAACACTAAGGTACTTTGGTATGGACACTTAACATGACACGACACTACACGGACACGTCGACAATGTTAATGTAAAAAATATAGAACTCCGATATCAGTTTTTTTTTTTGAATATATATCAATTTTTTTATATACAGTCTAAAGTAAAATCAAAATACATACATAAGAATTTAACTTGAATAATTTATATAATTGAAAAAAGTTTTAAAATAAGATATAATAGTATTTGATCTTTATTTATTCATCTATTATAAAAAAAAAACTAAAATCGTAATCAACTTTAATTTCTACAACTCCCTAATTGATCAACAATTCTTAACATATATGTAACTCTTGTATCTAAGGTGTGTGGAATTAGGATAGAAAAAAATATTTATGTCATTTGAGTTGACCGATATAATTCGAATGAGCATTCTGAGGGTTGGACACCAATTTACAAATGTTGAAGTAAAGAAAAAAACAATTTTATTTAGGATATTGAATTTAGTTGTTCGACACGTGTCATACTAGTGTTATAGGAGTATTGGACACCAATGTATGTCTGACACCTCAACACACATAGCATCTCCAATGGGGGGTCCTTACTTAACAAGGACCACTCCCCGTTAAGGACCCTCCATTGGAGGAAGAAAAAATGAGTCCCCGTTAAGGAACGAGCAACTATATAAGGACCCTCTCTCTCCTGGGTAACTAACGGGTCCCACGTTTAAAAAAGTAATAAAATGTGTACTACTTGGTCCCACTTGCATAAAGGAATAATAAAATGTGTACTACTTGGTCCCACTTGTAAAAAGGAGTAATAGATAAATTATTTTTGTTTAATGATATAAAGATAGTGGGACATATTTAAGTACTTTTCATTGGAGTCCTTATTAATGTATTACCATTGGAGTCATTGAGTCCTTAATAGATACTTTTATTAAAAAATTATAAATAAGTGATGTGTCACGTGGGGTCCATTTAAGGAGTCCTTGTTAGGGAACTACCATTGTGGATGCTCTTGTAATTTTCTTGCAAAATAAGGTAGCAAGTAAATTGCCAACTCTATTATTTTGCAGCTCTTTTAATGGTAGACAGCCATTTTTTATATTTTAATTGAAAATGAGAGAGATTTCTCGAAACGTCCTTGTCCTTGTCTTTTTTATTTTAATAGGAGTTAATGTTTTAAGGGAATATAATAGAAGTTAATGAGATAGCCATTAAATTCTTTTTAATATCTTCACACCTAACCAATAACCATATGTGTTACTAGCTTCGTCCTTAAGCATTGTATCCCATTGAATGTGTGTTGATGGAGTATTGTTTGTAGTTGGTTGTTGTATTATCATAAGAGTATATAGATTATAGGAAAAGATATAACATATTAAGATATGTAAGTAAAACAATCTCGGTACAATTGAAAATTTGAAAAAGGGTCTTGTAAAAGATAAGAAAAAAAAAACGCAAGAGAATCTTAGTTAGTTACATACAAAATATTATATTTAGTTACAGATAAAATAGTAAAAAGTAATTTATTATCATAGTTTGATGTTGGAAGTAATTATATATGAAAGATTAGATCATAGTTAAAGTGATTTATAAAAAAGTCCAAACCGTAAGGATTTTAGATCTCTTAACCAATTGTTCATGAATTTGATCTCTAACTTTTGCATGTGTGAAAATTTGAGTTGAATGAGGGAAAATCTTTCTTGTATGTTTCACAAGTTTTCGACAAAGATGGAACAAAATTTAATGTGATGGAAACTTCATACTTATAAGATAACCAATTTTTTTTTTTTTTTTTTTACCGTTAGTTACTTTTAGTTGATGATGAAGCATAACCTGTTTTTACATGCATTGTGTTTCATTTTTGCTTTTTTATAAAAAAGTTTTTACATTCACTCTATCAATTTTTTTAACCGAATATCGTTGTGTGGTTAATTAATCAACGTCGGTTTCACAACATTGCTACCAGTTTTTTTAGGAAACAAAATTGAGGGAGATACGTTTTTGTCTTTGTCTTGTTTTGGTGAAATCTTTCTTGTCGTTTGTCTGTATTTATTTATTTTAATCGAGTGACACATTTTACTTTTTTAGGATAAGAATGATGCTGTTTATATTGTTTTGGGCTACAACTTTCAATTACTTTGCTTTCACATCCGTCTAAGGACAACATATAACTTTTGCATTTTTTTCATTCATCAAATAATTACGGAGTATTTCTTCAAAAAAAAAAAATTACGGAGTAATTTTGATGATTTATTATAAAAACTAGTCTAGTATCTTTAGAAGAATCATTTATTCAAACTTGTTTCACAACAATATAAGTGTAAATTTTCCTTAAACAAACGATATAAGTGTTAATTTATAGATATTTTTTTTTCTTCATGAAAGGGATCAATTAGATGTTGTAAACTAAATGTTCCCGTATCTAAGCAAGTTAATTTTATATAAACCTATTTTTCACAAATTTTTATATAAACCTAAGGAAGGTTTTTCTAGATTTTTTTTTTATAAGATGGATTTTCTTGATATGAACCTAAGGAAGGTTTTTATCATACGAACCTAACAAACAAGGTCTTTATCACTCTATAAATTACGAGTATGAACGTGACTGTCCTAAGGTTCAATAATTTGAAATTGAGAGGTCTTTTGTCTTGGTATGGGGTAAGATTTTGGGATATATTATTATAATGGGGTGTGTAATTTGTTCGTTTCTCTTCAATAATTTTCTACTAGTCAATTTATGTTACTTAAGGAATGGACCCATGACAAATCCCTAAAAAAAAAAAGGAATGGACCCATGACAAATGTAAATCGTTGTCTTACATTTTTTTTAGATGAGCCTGTCATTGTCTTACATAATAGGAGTGTACTACTAGCCAGTAATGATTCCTTTTTCATAAAGATTCTTTACGTTAATTAATTCTTGGGTGCTTTAAGTGGGGTTAACATAACATAAGGACATAGCATGAATATAGAGCATACTAGTATTCTTATTCACCAAATAGTCATCAACTGAAATTAGAGTTCAAATCTGCTCCAGTTCTTATATCCTAATAGTAAAAATTAATGGCTAAATGACTAGATTAATTAATGGTATTTTAAGATCTTATCATGATTTACATTAAAAAAAGTCGTATGAATATGATGCATGGTCTCTGTATATGCCCTTTGATTAACAGTTTGGGCCATCCATGAACAAAGTAACGTATCTTTTTGAAAGAAGGAACAAGTAACGTACACATTAATTGACAAAAAATATCAAATATTTCTGACACTATTATTTTGCATTTTAGCGGTGCCTAGAAATTCGCTAAGATCCATAATACCATAGTATAGAATTCCATAAAATACTTGACAAAAAAAGAAAAAGAATTCCATAAAATAATTATTCATTCATCATAGAAAATTAATTCCTTCATAAAAAAAGAAAAAGGAAATGAATTCCATCACGACAATTTGTCCTTTTTCTTTATATTTTTTTCTCAAATTTATACATAAAGTTAGAAGAAATTTCAAAAGATATCTGATATTTGGTACAAGTGCATCTACAGTAGGAATGGACCTGGCTAGGTATGCTTTTTCCGGGTAATGTGGACATATATATACATTGACTATATCTGGGTTATACTAGAGAAATGATATTTTGACAACCACTTTTTGACAACTTTTAGACAACTTTCTCTCTCATACTCACATGATGTTATTATCCTTTCTCTTCCTTTTTCTCTCTCCATTGTTTTTGACCAATAAGAAGTGGGAAAAACAAGGTTGTCAACAAAGTTGTCATCAAATGGATGTCAAAATATCATTACTCGTTATATTATAAACTTATGACACTTCGTAAATAAATAAACTTTAGACATTTAAACAGTAACATAGTGTCCTTAAAAAAACAGTAACACAGATCCTTGAACATACTCAATTGTACTTTTTAGTGAATTAATAGATTAATAAATAACAACCTATAAATGGCATAACGCAACTTTATTTTATACTCTATCGAGACTTTTTCTTAAATCAGAGGCACTAACCATATTATATATTCAAATAATAACACTTAATTTTCTTGATACCTTCACAAATATTATATTCAACTCCCGTAAAAAAATTATATTTAATTAAATTGTTGTAATTCCCATATTATTTAATCTTCTTGATGTCCATACCATAGACTACATTACATGATTTATTAGAAAATTACATTAAAGTCATGTGCTGGTCACATGATTAAAGGGTTCCGTCAGAGATTCGATCCATCCCCTACAATGTTGCTCAACATGTAATACGAATGATGATGTTCATGATAAAAAGTATTCATATTTGTTAGGTTTAAATATAAAAAATAACTATCACAGAGTTGATTTTAACATAAGGGGTTAAACTCTCACAACATAACGAATCAAAGTTTGAATCCCAACTAAAAGAAATTTTAATAAAAGGGGTTAAACTTTCACAACATAACGAATCAAAGTTTGAATCCAGACTAGAGAAGTACGCATATTTAATGTGATTTCTAAAACATTGATTATGTATGCAGGTTGCTAGTTGGGGAGCCTATCTACTATCACGTGACATATTAACAGTGTCAATTGCACCAAGGGATACTCATGAAGCACAAGTTCAATTTGCTCTTGAAAGAGGTGTTCCTGCAATTATTGGGGTCTTTGCCTCAAAGAGATTACCTTTTCCTTCTAGAGCCTTTGACATGGCACATTGTTCTCGTTGTCTTATTCCATGGCCTGAATATGGTATAGTACTATTCTTACTCACCAAATATCATCAAAAGAAAAAATTAATTCCTTTTTAAAAATGTTTAAATACCTTTGTTGTCTATTATATACATACTTTTAAGCCTCTAAGAATATATGTAACATTATTTTGGTCCTTGAAATATGGATTATATAAAGATTAATTCTAACCTATGAAGCATGGACAGACACCAGACAAGACACAGACATTGACATAATTTAACATGTAATTACATGTGTCTGTGTTGTTTCACTGTCGAATATGAACACATATATCAGACATTGAAACACGTCTTTGATTAGAAGTGTCTGTGCTACAAAGATTCTAACATTGTTCATACATTAAAAGGACTGAAACTGAAACAACAATTACTTAAAATAACATTTCAAAGACTAGAATATTATTTTTCATAGAAATTAAAGTATGAAGCATTATGATTCAACTTTAACATGTATTTGATTATTTTTTTATTTACTTTGTTGAATTAGATGGACTTTATCTAAATGAAGTTGATAGAATTCTGCGTCCTGGTGGGTATTGGATTCTATCTGGTCCACCAATTCGCTGGAAGAAATATTGGAAAGGATGGGAAAGAACAAAAGAAGACTTGAATGAAGAGCAAACCAAAATTGAGAATGTAGCTAAAAGCCTTTGTTGGAATAAAATAGTGGAGAAAGGTGATATTGCTATTTGGCAGAAACCAAAAAATCATTTAGATTGCAAATTCACTCAAAATAGGCCTTTTTGCCAAGAGCAGAATAATCCTGATAAAGCATGGTATGTGCTTCATTTTTCTATCCTCTTGTGTTTGAATTTTTTATTTATGTTTATGCTTACATTTTATTGAAGTTTGGTTAAAAGATGTAAGGTTACATTAGATGCCATTTGTGGAGACTCCCTTCCAAATTATTGCATTTTTTTGTACATAGAATATTATCACATGTCTTGAATAGAATATTTGAGATGTGATAAAGGGTGAAGAGGTTAGTTATCATAAGTTACACTTTTTATTGTCATCCAATCAAATCATAATTTGTAGTATTAAAGTGGTTTGTTGACTTACAACCACTCATTTTCTAATGGGTCTGGGTGCGTTTGTTTTAGCTTTAAAAAAAATAGATTTTGAGTTAGAAGAATCTAGAGATTTTTTTTTACAGATTCTTAAAAAAATCTAAATCTATTTCTGTTTGTTTACTATCATAAAAATCATTTTTTTAAGATTTGAAACTCTTGCATTTAGGAAAAAAAAATAGATTTTGAAAAAGCTACTTGAAATAGATTTTCATTTTGAGACTAAAAATGGTTTTTTTAGCAAAATGGATTTTTTAAAAATCTAAAACAAACACAACAAAAATTAAAAAAGTGATTTTTTAGTTAAAAAAATAGATTTTTTTTCAAAAAAATCCAAAACAAACGGGCCCTAAGTAGCAACTTACATCTAAAAATTTGATAAATACCTCTTATGATATAACTTGTTAATTTACCTCTACTATCAAATGAGTGTGCAGATCTTACAAGGATTTTTTTAACTAGACTCACTCAATTTTCAACCAAGTGAAGAGTAAATTGTCAACCAAATGATTCTAGGTAACCGATAATTTTTAAAGGATATAAATTAATAAATTATAGCTGATAAATTGTCAAATGCTTCTAAAAGTGCAAGTTGCTAATTTACTCACTACTATAAATGTGTGGATGTAAATTAAGAAATCCCTGTACTAAATTATTTTGAAAAGTAACATAATGATGTTATTATAGTATGAATAATCAACTATAGTTAGTTGATAGGTTAACTGGAGTTAGTAGTTTGGTTAGAAGTTAGTTAGAGTTAGTTACTCCCACTAATCTCTATATATAAGAATATCATTGTACTCATTCATCATTTCACTATATGAATCTTTATGAGTATCTTCCTCATGGATGGTCTTATACTTGTTTTCTTGCTGATCAATATGACCTTATTCCCTATGATTCCATGATTTATAACAGATGTGGCCAAATAGTTGTATTTATTGGATGACAATATAAACATAAATTTGGTTTACATTTTTGGGCGTGTATCCATTAAAGTTTGGAGAAAATTCATATTGTATGAGATGATTCACTTTTTCTTATCCAATTATTTTTTATTCTTATGTTTTTCATTTAGTGTAAGGTCTACTTCTTTTATGCTGTTCTATCCGTAGTGATAAAGACATTACATCATTAATTTATTTTTTTTCCTTATGATTTCTTCAACTAAACAAATTGAGAGATTTATTTCAATTTTAAATACTCTTCCTCTATCCAAACAATATATATAATTCATTAATTATATATTTTTATCCATCTGTGTTATGTAATTTTCACTCCAATTTCAAACCAACTAACCAAGTATAACAAATCTAAGTCCCTTTCAACTAACAAATGTTGGTCCTCACACTTAATTTCTGCCAATTAAATATTTTTTTTCATGTTAGTAATTATTATTTTGGTCACTTTTAGGTACACAAACATGCAAACATGTTTAAATCCACTCCCTAAAGTGTCCAACAAAGAAGAAATTTCAGGTGGGGAATTAAACAAATGGCCTCAAAGACTAAAATCAACCCCACCTAGGATTTCAAAGGGGACCATTAAAGGTGTCACACCTCAAACATTCTCAAAAGACAATCAACTATGGAACAAAAGAGTATCATATTACAAAAAAGTTAACAATCAACTTGGAAAAGCTGGTAGATACAGGAACCTATTAGACATGAATGCTTATTTGGGTGGATTTGCAGCTTCACTTGTTAAATATCCTATTTGGGTTATGAATGTGGTTCCTATTCAAGCTAAAGTTGATACACTTGGAGCAATATATGAAAGAGGGTTGATTGGAATGTATCATAATTGGTTAGTCAAATTTTTTTTGTAGTTGCACTTTTTGTTTTGATGATGTTTTTTTTTTATTCTTTTTTTTAAAGGGTTTGGATTTTATTTGTTTTGCAGGTGTGAAGCTGTGTCTACTTATCCTAGAACTTATGACCTAATTCATGCTGATTCTGTGTTTAGCCTTTATAATGACAGGTATACATTTATTTTATGTTATAAATTGATTATTAATGATTTAAGTAACACTGATAGTCATTTTACAATTGTCTCTGAGATGTTTGAATTATATCCCTTCATATTATAAGGTCAAATTCTTACCCCTGAACTCATGAATGAACAAAAAAATTGTTATAGGATTTAGCTTTCAAGCTAATGTTTAACTCATGCGTAATTTTTATTTAAACATCCATTCAACCAAATCACAATATAAGAATTATGCCAGCAACACACACTCTAACAATTAATACATGATTCTGCTTTGTAGATGTGAATTGGAAGACATATTGCTAGAGATGGATAGGATTCTTAGACCAGAAGGAAGTGTAATAATTAGAGATGATGTAGATATATTGGTCAAAGTAAAGAGCATAATCAATGGCTTGGAATGGGAGAGTCAAATTGTGGACCATGAAGATGGGCCTCTTGAAAGAGAGAAACTTTTATTTGCTGTGAAGAAATATTGGACCTCTCCTGCCTCAAATGACAATACTATTTAG
Protein sequence

>MS.gene38652.t1

MIYRERHCPKKHEILKCRVPAPNGYKNPFPWPTSRDMAWYANVPYRHLTVEKAGQNWIRFDGDKFRFPGGGTMFPNGADKYIDDIGKLINLEDGSVRTAVDTGCGVASWGAYLLSRDILTVSIAPRDTHEAQVQFALERGVPAIIGVFASKRLPFPSRAFDMAHCSRCLIPWPEYDGLYLNEVDRILRPGGYWILSGPPIRWKKYWKGWERTKEDLNEEQTKIENVAKSLCWNKIVEKGDIAIWQKPKNHLDCKFTQNRPFCQEQNNPDKAWYTNMQTCLNPLPKVSNKEEISGGELNKWPQRLKSTPPRISKGTIKGVTPQTFSKDNQLWNKRVSYYKKVNNQLGKAGRYRNLLDMNAYLGGFAASLVKYPIWVMNVVPIQAKVDTLGAIYERGLIGMYHNWCEAVSTYPRTYDLIHADSVFSLYNDRCELEDILLEMDRILRPEGSVIIRDDVDILVKVKSIINGLEWESQIVDHEDGPLEREKLLFAVKKYWTSPASNDNTI