Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38955.t1 | XP_013445455.1 | 92.1 | 394 | 31 | 0 | 1 | 394 | 1 | 394 | 3.70E-204 | 720.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38955.t1 | Q9S7T8 | 50.9 | 389 | 186 | 4 | 6 | 392 | 5 | 390 | 3.0e-106 | 386.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38955.t1 | A0A072TQK6 | 92.1 | 394 | 31 | 0 | 1 | 394 | 1 | 394 | 2.7e-204 | 720.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38955 | MS.gene045585 | PPI |
| MS.gene38955 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene38955 | PPI |
| MS.gene065945 | MS.gene38955 | PPI |
| MS.gene031697 | MS.gene38955 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38955.t1 | MTR_8g461160 | 92.132 | 394 | 31 | 0 | 1 | 394 | 1 | 394 | 0.0 | 723 |
| MS.gene38955.t1 | MTR_3g101180 | 70.250 | 400 | 113 | 2 | 1 | 394 | 1 | 400 | 0.0 | 562 |
| MS.gene38955.t1 | MTR_3g101010 | 67.700 | 387 | 121 | 2 | 6 | 392 | 5 | 387 | 0.0 | 518 |
| MS.gene38955.t1 | MTR_7g451890 | 66.071 | 392 | 133 | 0 | 2 | 393 | 10 | 401 | 0.0 | 514 |
| MS.gene38955.t1 | MTR_7g047780 | 65.561 | 392 | 135 | 0 | 2 | 393 | 10 | 401 | 0.0 | 513 |
| MS.gene38955.t1 | MTR_7g050750 | 65.561 | 392 | 135 | 0 | 2 | 393 | 4 | 395 | 0.0 | 509 |
| MS.gene38955.t1 | MTR_3g018740 | 66.154 | 390 | 125 | 3 | 6 | 394 | 5 | 388 | 1.61e-179 | 504 |
| MS.gene38955.t1 | MTR_4g045707 | 64.194 | 391 | 134 | 2 | 1 | 391 | 1 | 385 | 4.39e-179 | 503 |
| MS.gene38955.t1 | MTR_7g050810 | 64.541 | 392 | 139 | 0 | 2 | 393 | 12 | 403 | 4.82e-175 | 494 |
| MS.gene38955.t1 | MTR_3g101130 | 61.735 | 392 | 145 | 2 | 1 | 392 | 1 | 387 | 1.24e-173 | 490 |
| MS.gene38955.t1 | MTR_3g101030 | 61.461 | 397 | 133 | 4 | 12 | 392 | 35 | 427 | 7.85e-170 | 481 |
| MS.gene38955.t1 | MTR_8g027395 | 62.694 | 386 | 136 | 2 | 7 | 392 | 18 | 395 | 3.49e-169 | 479 |
| MS.gene38955.t1 | MTR_3g048000 | 61.224 | 392 | 123 | 5 | 4 | 392 | 25 | 390 | 5.50e-163 | 463 |
| MS.gene38955.t1 | MTR_8g027420 | 59.184 | 392 | 141 | 3 | 1 | 392 | 1 | 373 | 5.42e-158 | 449 |
| MS.gene38955.t1 | MTR_4g088525 | 60.606 | 363 | 137 | 1 | 30 | 392 | 11 | 367 | 8.08e-158 | 449 |
| MS.gene38955.t1 | MTR_3g015620 | 60.914 | 394 | 118 | 6 | 6 | 393 | 16 | 379 | 3.73e-153 | 437 |
| MS.gene38955.t1 | MTR_2g046030 | 57.761 | 393 | 153 | 4 | 6 | 394 | 5 | 388 | 5.68e-152 | 435 |
| MS.gene38955.t1 | MTR_2g045980 | 57.761 | 393 | 153 | 4 | 6 | 394 | 5 | 388 | 1.07e-150 | 431 |
| MS.gene38955.t1 | MTR_3g101050 | 60.104 | 386 | 133 | 7 | 10 | 394 | 33 | 398 | 5.30e-150 | 430 |
| MS.gene38955.t1 | MTR_4g088535 | 57.254 | 386 | 141 | 4 | 4 | 389 | 5 | 366 | 1.85e-147 | 423 |
| MS.gene38955.t1 | MTR_3g101200 | 55.190 | 395 | 148 | 5 | 1 | 394 | 26 | 392 | 1.16e-136 | 396 |
| MS.gene38955.t1 | MTR_3g102920 | 53.535 | 396 | 134 | 6 | 4 | 392 | 56 | 408 | 4.70e-131 | 382 |
| MS.gene38955.t1 | MTR_3g101190 | 55.616 | 365 | 93 | 3 | 30 | 392 | 13 | 310 | 1.19e-130 | 378 |
| MS.gene38955.t1 | MTR_7g050830 | 57.547 | 318 | 104 | 2 | 2 | 299 | 12 | 318 | 2.93e-122 | 357 |
| MS.gene38955.t1 | MTR_3g100995 | 63.953 | 258 | 88 | 2 | 136 | 393 | 11 | 263 | 2.96e-114 | 334 |
| MS.gene38955.t1 | MTR_3g015760 | 66.038 | 265 | 80 | 4 | 132 | 393 | 23 | 280 | 1.44e-108 | 320 |
| MS.gene38955.t1 | MTR_3g018747 | 62.030 | 266 | 79 | 6 | 132 | 394 | 9 | 255 | 1.06e-103 | 307 |
| MS.gene38955.t1 | MTR_3g100010 | 51.935 | 310 | 101 | 3 | 33 | 309 | 42 | 336 | 2.26e-102 | 307 |
| MS.gene38955.t1 | MTR_3g100520 | 59.910 | 222 | 72 | 4 | 173 | 392 | 1 | 207 | 2.95e-85 | 258 |
| MS.gene38955.t1 | MTR_3g111160 | 59.910 | 222 | 83 | 3 | 173 | 392 | 1 | 218 | 4.72e-82 | 250 |
| MS.gene38955.t1 | MTR_3g114310 | 41.013 | 395 | 206 | 11 | 12 | 391 | 25 | 407 | 9.41e-82 | 256 |
| MS.gene38955.t1 | MTR_3g101110 | 56.485 | 239 | 76 | 3 | 132 | 368 | 68 | 280 | 2.32e-78 | 243 |
| MS.gene38955.t1 | MTR_3g099970 | 61.735 | 196 | 58 | 2 | 132 | 327 | 20 | 198 | 9.75e-78 | 238 |
| MS.gene38955.t1 | MTR_2g046410 | 57.619 | 210 | 81 | 2 | 189 | 394 | 144 | 349 | 2.06e-75 | 238 |
| MS.gene38955.t1 | MTR_3g101150 | 67.702 | 161 | 42 | 2 | 238 | 392 | 1 | 157 | 2.13e-68 | 213 |
| MS.gene38955.t1 | MTR_3g101020 | 55.319 | 188 | 55 | 2 | 206 | 393 | 1 | 159 | 1.01e-59 | 191 |
| MS.gene38955.t1 | MTR_3g111150 | 53.631 | 179 | 57 | 2 | 8 | 186 | 1 | 153 | 1.50e-56 | 183 |
| MS.gene38955.t1 | MTR_3g102870 | 58.710 | 155 | 64 | 0 | 197 | 351 | 3 | 157 | 2.55e-55 | 180 |
| MS.gene38955.t1 | MTR_3g100990 | 55.405 | 148 | 64 | 1 | 4 | 151 | 3 | 148 | 2.27e-43 | 158 |
| MS.gene38955.t1 | MTR_4g093550 | 60.215 | 93 | 33 | 2 | 5 | 97 | 5 | 93 | 8.36e-25 | 97.4 |
| MS.gene38955.t1 | MTR_3g101140 | 63.235 | 68 | 24 | 1 | 325 | 392 | 48 | 114 | 7.73e-19 | 82.0 |
| MS.gene38955.t1 | MTR_6g046890 | 59.155 | 71 | 26 | 1 | 29 | 99 | 20 | 87 | 1.71e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38955.t1 | AT1G47710 | 50.900 | 389 | 186 | 4 | 6 | 392 | 5 | 390 | 1.59e-135 | 393 |
| MS.gene38955.t1 | AT1G47710 | 50.900 | 389 | 186 | 4 | 6 | 392 | 32 | 417 | 7.31e-135 | 392 |
| MS.gene38955.t1 | AT3G45220 | 45.178 | 394 | 198 | 5 | 7 | 391 | 6 | 390 | 1.87e-118 | 350 |
| MS.gene38955.t1 | AT2G25240 | 46.015 | 389 | 194 | 8 | 7 | 391 | 6 | 382 | 8.17e-113 | 335 |
| MS.gene38955.t1 | AT2G26390 | 45.363 | 399 | 186 | 8 | 7 | 391 | 6 | 386 | 1.12e-110 | 330 |
| MS.gene38955.t1 | AT1G64030 | 43.445 | 389 | 195 | 4 | 6 | 391 | 5 | 371 | 5.59e-101 | 305 |
| MS.gene38955.t1 | AT1G62170 | 42.781 | 374 | 173 | 5 | 29 | 391 | 88 | 431 | 6.59e-99 | 301 |
| MS.gene38955.t1 | AT2G14540 | 42.416 | 389 | 197 | 5 | 6 | 391 | 33 | 397 | 4.38e-97 | 295 |
| MS.gene38955.t1 | AT2G35580 | 42.424 | 363 | 178 | 8 | 36 | 391 | 33 | 371 | 2.24e-93 | 285 |
| MS.gene38955.t1 | AT1G62170 | 39.312 | 407 | 173 | 6 | 29 | 391 | 88 | 464 | 7.93e-92 | 284 |
| MS.gene38955.t1 | AT1G64010 | 43.891 | 221 | 96 | 5 | 173 | 391 | 1 | 195 | 4.22e-57 | 186 |
| MS.gene38955.t1 | AT1G64010 | 43.204 | 206 | 89 | 5 | 188 | 391 | 2 | 181 | 3.79e-50 | 167 |
| MS.gene38955.t1 | AT1G62160 | 40.816 | 196 | 88 | 6 | 198 | 391 | 49 | 218 | 3.04e-37 | 134 |
| MS.gene38955.t1 | AT1G63280 | 56.780 | 118 | 47 | 2 | 129 | 244 | 5 | 120 | 6.62e-37 | 130 |
| MS.gene38955.t1 | AT1G51330 | 49.107 | 112 | 54 | 1 | 130 | 238 | 29 | 140 | 1.06e-25 | 103 |
| MS.gene38955.t1 | AT1G64020 | 33.929 | 112 | 71 | 3 | 13 | 123 | 12 | 121 | 1.98e-13 | 67.0 |
Find 81 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATGCACTATACTTTAA+AGG | 0.146562 | 8.4:+49351945 | MS.gene38955:CDS |
| CCGAAATTCAAGATTTCTTT+TGG | 0.171353 | 8.4:+49352275 | MS.gene38955:CDS |
| TCTGGAACCATACTCTTTAT+TGG | 0.177113 | 8.4:+49352572 | MS.gene38955:CDS |
| TAGTGGAAGTTGGTGCTTTC+AGG | 0.177468 | 8.4:+49352249 | MS.gene38955:CDS |
| CCTTCGTTGGCTTTCCTTAA+TGG | 0.196609 | 8.4:+49351474 | MS.gene38955:CDS |
| TGACAAAAGAAGCAAATTTA+TGG | 0.225380 | 8.4:+49351844 | MS.gene38955:CDS |
| TTGTCTTCACCTTGCGTATA+AGG | 0.282322 | 8.4:-49352113 | None:intergenic |
| AGCCTATGGGGAAAGCTATA+TGG | 0.293869 | 8.4:+49352454 | MS.gene38955:CDS |
| AGCTTCCGAATCGAAGTTCT+TGG | 0.295807 | 8.4:+49352205 | MS.gene38955:CDS |
| CTGGAACCATACTCTTTATT+GGG | 0.301041 | 8.4:+49352573 | MS.gene38955:CDS |
| GTTCAACCCACATACCATTA+AGG | 0.320214 | 8.4:-49351488 | None:intergenic |
| GGTTTCTTTGTATTCTTGTT+TGG | 0.323549 | 8.4:-49351271 | None:intergenic |
| GAAATATGTCGGACACATAA+AGG | 0.333781 | 8.4:-49352394 | None:intergenic |
| CCAAAAGAAATCTTGAATTT+CGG | 0.337465 | 8.4:-49352275 | None:intergenic |
| CAGTATATCAGCGTTCTTGA+TGG | 0.373429 | 8.4:+49352071 | MS.gene38955:CDS |
| CAAGCTTCCTCGCGAATTAG+TGG | 0.375298 | 8.4:+49352232 | MS.gene38955:CDS |
| CACTTGCCCAATAAAGAGTA+TGG | 0.383332 | 8.4:-49352579 | None:intergenic |
| AGCACGATGTGGAGCGATAA+TGG | 0.391927 | 8.4:-49351309 | None:intergenic |
| GCCTATGGGGAAAGCTATAT+GGG | 0.398940 | 8.4:+49352455 | MS.gene38955:CDS |
| TGGCTTTCCTTAATGGTATG+TGG | 0.399840 | 8.4:+49351481 | MS.gene38955:CDS |
| CTCTCCAATGCTGCTCCTGC+CGG | 0.400280 | 8.4:+49351447 | MS.gene38955:CDS |
| GTCAAAGCTCCTTCGGAGAA+AGG | 0.403461 | 8.4:-49352341 | None:intergenic |
| TTTCTTCCTGATGTAAAAGA+TGG | 0.415626 | 8.4:+49352158 | MS.gene38955:CDS |
| TTGTTTGGAGAACAAATGTT+TGG | 0.415802 | 8.4:-49351256 | None:intergenic |
| AGCAATATTAGCTTTGAAAT+CGG | 0.420013 | 8.4:-49351553 | None:intergenic |
| GACAAAAGAAGCAAATTTAT+GGG | 0.422156 | 8.4:+49351845 | MS.gene38955:CDS |
| TTGATCAGAGAAGATTTGTC+TGG | 0.431879 | 8.4:+49352554 | MS.gene38955:CDS |
| TCCTCCGGCAGGAGCAGCAT+TGG | 0.439334 | 8.4:-49351451 | None:intergenic |
| TTTATTGAAGTAAATGAAGA+AGG | 0.453378 | 8.4:+49352425 | MS.gene38955:CDS |
| GGTTAGTGATTGAATCGCTC+TGG | 0.456344 | 8.4:-49351209 | None:intergenic |
| ATAGCTTTCCCCATAGGCTT+CGG | 0.456657 | 8.4:-49352450 | None:intergenic |
| GTGCTGAGCATCATCGCTGC+TGG | 0.468288 | 8.4:+49351327 | MS.gene38955:CDS |
| TGATCAGCTACGAAGTTTAT+CGG | 0.470382 | 8.4:-49352518 | None:intergenic |
| GAAGAAGGTACCGAAGCCTA+TGG | 0.478272 | 8.4:+49352440 | MS.gene38955:CDS |
| GTCATGAAGGGAACCTTGAT+CGG | 0.480422 | 8.4:-49352035 | None:intergenic |
| GATATACTGCATCTCATAGC+TGG | 0.493150 | 8.4:-49352057 | None:intergenic |
| ATCATCGCTGCTGGCTCTGA+AGG | 0.496680 | 8.4:+49351336 | MS.gene38955:CDS |
| TTTCCGTGGATTTGGATTGA+AGG | 0.501160 | 8.4:-49351386 | None:intergenic |
| TGGTCAAAGAAACCTTGGTT+AGG | 0.504873 | 8.4:-49351230 | None:intergenic |
| AGGAGCAGCATTGGAGAGCA+CGG | 0.507039 | 8.4:-49351442 | None:intergenic |
| GGCTTTCCTTAATGGTATGT+GGG | 0.508630 | 8.4:+49351482 | MS.gene38955:CDS |
| TCCTGCCGGAGGACCTTCGT+TGG | 0.508638 | 8.4:+49351461 | MS.gene38955:CDS |
| AAGAAGGTACCGAAGCCTAT+GGG | 0.511565 | 8.4:+49352441 | MS.gene38955:CDS |
| TCTCAATGGTAGCCCGATCA+AGG | 0.512612 | 8.4:+49352022 | MS.gene38955:CDS |
| GAAAGCCAACGAAGGTCCTC+CGG | 0.516566 | 8.4:-49351466 | None:intergenic |
| GTGTTCCAAGAACTTCGATT+CGG | 0.523096 | 8.4:-49352210 | None:intergenic |
| GCCAACGAAGGTCCTCCGGC+AGG | 0.525135 | 8.4:-49351462 | None:intergenic |
| ATCGGTGGCGGAGTATCGTT+AGG | 0.526754 | 8.4:-49352500 | None:intergenic |
| CATCTCATAGCTGGTCATGA+AGG | 0.531770 | 8.4:-49352048 | None:intergenic |
| GGCGATGGTCAAAGAAACCT+TGG | 0.531986 | 8.4:-49351235 | None:intergenic |
| TGCATTTGCAAAGATGAGGT+TGG | 0.533879 | 8.4:-49351931 | None:intergenic |
| CCCCATATAGCTTTCCCCAT+AGG | 0.536633 | 8.4:-49352456 | None:intergenic |
| AAAAGACTTGTGAAATATGT+CGG | 0.536698 | 8.4:-49352405 | None:intergenic |
| CTTTAAAGGAGTGTGGAAAG+AGG | 0.539924 | 8.4:+49351959 | MS.gene38955:CDS |
| GTTAAACTATTAAATGACTC+AGG | 0.540790 | 8.4:-49351909 | None:intergenic |
| TCCAATGCTGCTCCTGCCGG+AGG | 0.541408 | 8.4:+49351450 | MS.gene38955:CDS |
| TCATGAAGGGAACCTTGATC+GGG | 0.545518 | 8.4:-49352034 | None:intergenic |
| ATTCCTTCAATCCAAATCCA+CGG | 0.547231 | 8.4:+49351383 | MS.gene38955:CDS |
| TAATGGTGAAAACACAACAT+TGG | 0.559392 | 8.4:-49351292 | None:intergenic |
| CTTCGTCTTCCTTATACGCA+AGG | 0.561814 | 8.4:+49352104 | MS.gene38955:CDS |
| TTCAGTTGATTTCGTTAACA+AGG | 0.566863 | 8.4:+49351575 | MS.gene38955:CDS |
| CACTATACTTTAAAGGAGTG+TGG | 0.566946 | 8.4:+49351952 | MS.gene38955:CDS |
| ACTGATATGCTAAAAGAGCT+AGG | 0.568471 | 8.4:+49352308 | MS.gene38955:CDS |
| CCTCGCGAATTAGTGGAAGT+TGG | 0.573383 | 8.4:+49352239 | MS.gene38955:CDS |
| GGAGAACAAATGTTTGGCGA+TGG | 0.575181 | 8.4:-49351250 | None:intergenic |
| GCTACGAAGTTTATCGGTGG+CGG | 0.590090 | 8.4:-49352512 | None:intergenic |
| CTACAAGATCACTTGTCTAG+AGG | 0.591761 | 8.4:-49352608 | None:intergenic |
| ATCTCATAGCTGGTCATGAA+GGG | 0.593119 | 8.4:-49352047 | None:intergenic |
| CGATGATGCTCAGCACGATG+TGG | 0.607651 | 8.4:-49351320 | None:intergenic |
| ATAGTGCATTTGCAAAGATG+AGG | 0.626715 | 8.4:-49351935 | None:intergenic |
| TTCAATCACTAACCTAACCA+AGG | 0.635592 | 8.4:+49351218 | MS.gene38955:CDS |
| AGAAGGTACCGAAGCCTATG+GGG | 0.663955 | 8.4:+49352442 | MS.gene38955:CDS |
| CACGGAGGAAACAAGCTGAG+AGG | 0.674325 | 8.4:-49351424 | None:intergenic |
| GGTGGCGGAGTATCGTTAGG+AGG | 0.683876 | 8.4:-49352497 | None:intergenic |
| CCATTAAGGAAAGCCAACGA+AGG | 0.699382 | 8.4:-49351474 | None:intergenic |
| CCAACTTCCACTAATTCGCG+AGG | 0.703336 | 8.4:-49352239 | None:intergenic |
| CCTATGGGGAAAGCTATATG+GGG | 0.708108 | 8.4:+49352456 | MS.gene38955:CDS |
| AGCAGCATTGGAGAGCACGG+AGG | 0.716416 | 8.4:-49351439 | None:intergenic |
| TCAGCTACGAAGTTTATCGG+TGG | 0.717176 | 8.4:-49352515 | None:intergenic |
| CTTGCGTATAAGGAAGACGA+AGG | 0.726910 | 8.4:-49352103 | None:intergenic |
| TATGCTAAAAGAGCTAGGCG+TGG | 0.728186 | 8.4:+49352313 | MS.gene38955:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATCAAACATAAAATTAA+TGG | - | chr8.4:49351805-49351824 | None:intergenic | 10.0% |
| !!! | TTTTATTTGGTATTTTATTT+TGG | + | chr8.4:49351656-49351675 | MS.gene38955:intron | 10.0% |
| !! | ATTATTTGATAAAAGACTTA+GGG | + | chr8.4:49351695-49351714 | MS.gene38955:intron | 15.0% |
| !! | TATTATTTGATAAAAGACTT+AGG | + | chr8.4:49351694-49351713 | MS.gene38955:intron | 15.0% |
| !!! | TATGTTTGATATTGTTTTAA+AGG | + | chr8.4:49351812-49351831 | MS.gene38955:intron | 15.0% |
| !! | CTTCAAGATAAATAAAAAGA+AGG | - | chr8.4:49351617-49351636 | None:intergenic | 20.0% |
| !! | TTTATTGAAGTAAATGAAGA+AGG | + | chr8.4:49352425-49352444 | MS.gene38955:CDS | 20.0% |
| !!! | AAAATAATAAAAGCACGATA+TGG | - | chr8.4:49351640-49351659 | None:intergenic | 20.0% |
| !!! | CGTGCTTTTATTATTTTATT+TGG | + | chr8.4:49351643-49351662 | MS.gene38955:intron | 20.0% |
| ! | AAAAGACTTGTGAAATATGT+CGG | - | chr8.4:49352408-49352427 | None:intergenic | 25.0% |
| ! | AAGAACAAAGATCGATATTT+AGG | - | chr8.4:49351731-49351750 | None:intergenic | 25.0% |
| ! | CCAAAAGAAATCTTGAATTT+CGG | - | chr8.4:49352278-49352297 | None:intergenic | 25.0% |
| ! | GACAAAAGAAGCAAATTTAT+GGG | + | chr8.4:49351845-49351864 | MS.gene38955:CDS | 25.0% |
| ! | GTTAAACTATTAAATGACTC+AGG | - | chr8.4:49351912-49351931 | None:intergenic | 25.0% |
| ! | TGACAAAAGAAGCAAATTTA+TGG | + | chr8.4:49351844-49351863 | MS.gene38955:CDS | 25.0% |
| !! | CGAAATTCAAGATTTCTTTT+GGG | + | chr8.4:49352276-49352295 | MS.gene38955:CDS | 25.0% |
| !! | TATGATTTTCACATTCTCAA+TGG | + | chr8.4:49352008-49352027 | MS.gene38955:CDS | 25.0% |
| !!! | AGCAATATTAGCTTTGAAAT+CGG | - | chr8.4:49351556-49351575 | None:intergenic | 25.0% |
| CTCTGATCAAAAACAAGAAA+GGG | - | chr8.4:49352544-49352563 | None:intergenic | 30.0% | |
| GCAAATGCACTATACTTTAA+AGG | + | chr8.4:49351945-49351964 | MS.gene38955:CDS | 30.0% | |
| GGTTTCTTTGTATTCTTGTT+TGG | - | chr8.4:49351274-49351293 | None:intergenic | 30.0% | |
| TAATGGTGAAAACACAACAT+TGG | - | chr8.4:49351295-49351314 | None:intergenic | 30.0% | |
| TCTCTGATCAAAAACAAGAA+AGG | - | chr8.4:49352545-49352564 | None:intergenic | 30.0% | |
| TTGTTTGGAGAACAAATGTT+TGG | - | chr8.4:49351259-49351278 | None:intergenic | 30.0% | |
| TTTCTTCCTGATGTAAAAGA+TGG | + | chr8.4:49352158-49352177 | MS.gene38955:CDS | 30.0% | |
| ! | AAAGTTGTTTAGATTTTCCG+TGG | - | chr8.4:49351403-49351422 | None:intergenic | 30.0% |
| ! | AACAATCCATCTTTTACATC+AGG | - | chr8.4:49352167-49352186 | None:intergenic | 30.0% |
| ! | CCGAAATTCAAGATTTCTTT+TGG | + | chr8.4:49352275-49352294 | MS.gene38955:CDS | 30.0% |
| ! | TTCAGTTGATTTCGTTAACA+AGG | + | chr8.4:49351575-49351594 | MS.gene38955:CDS | 30.0% |
| !!! | GAAAGAACTTGTTTTTGTGT+AGG | - | chr8.4:49351363-49351382 | None:intergenic | 30.0% |
| ACTGATATGCTAAAAGAGCT+AGG | + | chr8.4:49352308-49352327 | MS.gene38955:CDS | 35.0% | |
| ATAGTGCATTTGCAAAGATG+AGG | - | chr8.4:49351938-49351957 | None:intergenic | 35.0% | |
| ATTCCTTCAATCCAAATCCA+CGG | + | chr8.4:49351383-49351402 | MS.gene38955:CDS | 35.0% | |
| CTGGAACCATACTCTTTATT+GGG | + | chr8.4:49352573-49352592 | MS.gene38955:CDS | 35.0% | |
| GAAATATGTCGGACACATAA+AGG | - | chr8.4:49352397-49352416 | None:intergenic | 35.0% | |
| TGATCAGCTACGAAGTTTAT+CGG | - | chr8.4:49352521-49352540 | None:intergenic | 35.0% | |
| TTCAATCACTAACCTAACCA+AGG | + | chr8.4:49351218-49351237 | MS.gene38955:CDS | 35.0% | |
| TTGATCAGAGAAGATTTGTC+TGG | + | chr8.4:49352554-49352573 | MS.gene38955:CDS | 35.0% | |
| ! | AATCGGTAGCCACAATTTTT+CGG | - | chr8.4:49351539-49351558 | None:intergenic | 35.0% |
| ! | CACTATACTTTAAAGGAGTG+TGG | + | chr8.4:49351952-49351971 | MS.gene38955:CDS | 35.0% |
| ! | CATTTTTGTCAAAGCTCCTT+CGG | - | chr8.4:49352351-49352370 | None:intergenic | 35.0% |
| ! | GTTTAGATTTTCCGTGGATT+TGG | - | chr8.4:49351397-49351416 | None:intergenic | 35.0% |
| ! | TCTGGAACCATACTCTTTAT+TGG | + | chr8.4:49352572-49352591 | MS.gene38955:CDS | 35.0% |
| ACCTTCCTTCCGAAAAATTG+TGG | + | chr8.4:49351527-49351546 | MS.gene38955:CDS | 40.0% | |
| AGATCGATATTTAGGCCACT+TGG | - | chr8.4:49351723-49351742 | None:intergenic | 40.0% | |
| ATCTCATAGCTGGTCATGAA+GGG | - | chr8.4:49352050-49352069 | None:intergenic | 40.0% | |
| CACTTGCCCAATAAAGAGTA+TGG | - | chr8.4:49352582-49352601 | None:intergenic | 40.0% | |
| CAGTATATCAGCGTTCTTGA+TGG | + | chr8.4:49352071-49352090 | MS.gene38955:CDS | 40.0% | |
| GATATACTGCATCTCATAGC+TGG | - | chr8.4:49352060-49352079 | None:intergenic | 40.0% | |
| GGCTTTCCTTAATGGTATGT+GGG | + | chr8.4:49351482-49351501 | MS.gene38955:CDS | 40.0% | |
| GTGTTCCAAGAACTTCGATT+CGG | - | chr8.4:49352213-49352232 | None:intergenic | 40.0% | |
| GTTCAACCCACATACCATTA+AGG | - | chr8.4:49351491-49351510 | None:intergenic | 40.0% | |
| TGCATTTGCAAAGATGAGGT+TGG | - | chr8.4:49351934-49351953 | None:intergenic | 40.0% | |
| TGGCTTTCCTTAATGGTATG+TGG | + | chr8.4:49351481-49351500 | MS.gene38955:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr8.4:49351864-49351883 | MS.gene38955:CDS | 40.0% | |
| TGGTCAAAGAAACCTTGGTT+AGG | - | chr8.4:49351233-49351252 | None:intergenic | 40.0% | |
| TTGTCTTCACCTTGCGTATA+AGG | - | chr8.4:49352116-49352135 | None:intergenic | 40.0% | |
| TTTCCGTGGATTTGGATTGA+AGG | - | chr8.4:49351389-49351408 | None:intergenic | 40.0% | |
| ! | AAAAGACTTAGGGTACCAAG+TGG | + | chr8.4:49351705-49351724 | MS.gene38955:intron | 40.0% |
| ! | AGGAGCTTTGACAAAAATGG+TGG | + | chr8.4:49352352-49352371 | MS.gene38955:CDS | 40.0% |
| ! | CGAAGGAGCTTTGACAAAAA+TGG | + | chr8.4:49352349-49352368 | MS.gene38955:CDS | 40.0% |
| ! | CTTTAAAGGAGTGTGGAAAG+AGG | + | chr8.4:49351959-49351978 | MS.gene38955:CDS | 40.0% |
| AGCCTATGGGGAAAGCTATA+TGG | + | chr8.4:49352454-49352473 | MS.gene38955:CDS | 45.0% | |
| AGCTTCCGAATCGAAGTTCT+TGG | + | chr8.4:49352205-49352224 | MS.gene38955:CDS | 45.0% | |
| ATAGCTTTCCCCATAGGCTT+CGG | - | chr8.4:49352453-49352472 | None:intergenic | 45.0% | |
| CATCTCATAGCTGGTCATGA+AGG | - | chr8.4:49352051-49352070 | None:intergenic | 45.0% | |
| CCATTAAGGAAAGCCAACGA+AGG | - | chr8.4:49351477-49351496 | None:intergenic | 45.0% | |
| CCTATGGGGAAAGCTATATG+GGG | + | chr8.4:49352456-49352475 | MS.gene38955:CDS | 45.0% | |
| CTTCGTCTTCCTTATACGCA+AGG | + | chr8.4:49352104-49352123 | MS.gene38955:CDS | 45.0% | |
| CTTGCGTATAAGGAAGACGA+AGG | - | chr8.4:49352106-49352125 | None:intergenic | 45.0% | |
| GCCTATGGGGAAAGCTATAT+GGG | + | chr8.4:49352455-49352474 | MS.gene38955:CDS | 45.0% | |
| GGAGAACAAATGTTTGGCGA+TGG | - | chr8.4:49351253-49351272 | None:intergenic | 45.0% | |
| GGTTAGTGATTGAATCGCTC+TGG | - | chr8.4:49351212-49351231 | None:intergenic | 45.0% | |
| GTCATGAAGGGAACCTTGAT+CGG | - | chr8.4:49352038-49352057 | None:intergenic | 45.0% | |
| TATGCTAAAAGAGCTAGGCG+TGG | + | chr8.4:49352313-49352332 | MS.gene38955:CDS | 45.0% | |
| TCAGCTACGAAGTTTATCGG+TGG | - | chr8.4:49352518-49352537 | None:intergenic | 45.0% | |
| TCATGAAGGGAACCTTGATC+GGG | - | chr8.4:49352037-49352056 | None:intergenic | 45.0% | |
| !! | AAGAAGGTACCGAAGCCTAT+GGG | + | chr8.4:49352441-49352460 | MS.gene38955:CDS | 45.0% |
| !! | CCTTCGTTGGCTTTCCTTAA+TGG | + | chr8.4:49351474-49351493 | MS.gene38955:CDS | 45.0% |
| !! | GCCACAATTTTTCGGAAGGA+AGG | - | chr8.4:49351531-49351550 | None:intergenic | 45.0% |
| !! | GGTAGCCACAATTTTTCGGA+AGG | - | chr8.4:49351535-49351554 | None:intergenic | 45.0% |
| !! | GTGGTTTTACCTTTCTCCGA+AGG | + | chr8.4:49352332-49352351 | MS.gene38955:CDS | 45.0% |
| !! | TAGTGGAAGTTGGTGCTTTC+AGG | + | chr8.4:49352249-49352268 | MS.gene38955:CDS | 45.0% |
| AGCACGATGTGGAGCGATAA+TGG | - | chr8.4:49351312-49351331 | None:intergenic | 50.0% | |
| CAAGCTTCCTCGCGAATTAG+TGG | + | chr8.4:49352232-49352251 | MS.gene38955:CDS | 50.0% | |
| CCAACTTCCACTAATTCGCG+AGG | - | chr8.4:49352242-49352261 | None:intergenic | 50.0% | |
| CCCCATATAGCTTTCCCCAT+AGG | - | chr8.4:49352459-49352478 | None:intergenic | 50.0% | |
| CCTCGCGAATTAGTGGAAGT+TGG | + | chr8.4:49352239-49352258 | MS.gene38955:CDS | 50.0% | |
| GCTACGAAGTTTATCGGTGG+CGG | - | chr8.4:49352515-49352534 | None:intergenic | 50.0% | |
| GGCGATGGTCAAAGAAACCT+TGG | - | chr8.4:49351238-49351257 | None:intergenic | 50.0% | |
| GTCAAAGCTCCTTCGGAGAA+AGG | - | chr8.4:49352344-49352363 | None:intergenic | 50.0% | |
| TCTCAATGGTAGCCCGATCA+AGG | + | chr8.4:49352022-49352041 | MS.gene38955:CDS | 50.0% | |
| !! | AGAAGGTACCGAAGCCTATG+GGG | + | chr8.4:49352442-49352461 | MS.gene38955:CDS | 50.0% |
| !! | GAAGAAGGTACCGAAGCCTA+TGG | + | chr8.4:49352440-49352459 | MS.gene38955:CDS | 50.0% |
| CACGGAGGAAACAAGCTGAG+AGG | - | chr8.4:49351427-49351446 | None:intergenic | 55.0% | |
| CGATGATGCTCAGCACGATG+TGG | - | chr8.4:49351323-49351342 | None:intergenic | 55.0% | |
| GAAAGCCAACGAAGGTCCTC+CGG | - | chr8.4:49351469-49351488 | None:intergenic | 55.0% | |
| ! | AGGAGCAGCATTGGAGAGCA+CGG | - | chr8.4:49351445-49351464 | None:intergenic | 55.0% |
| !! | ATCATCGCTGCTGGCTCTGA+AGG | + | chr8.4:49351336-49351355 | MS.gene38955:CDS | 55.0% |
| !! | ATCGGTGGCGGAGTATCGTT+AGG | - | chr8.4:49352503-49352522 | None:intergenic | 55.0% |
| CTCTCCAATGCTGCTCCTGC+CGG | + | chr8.4:49351447-49351466 | MS.gene38955:CDS | 60.0% | |
| GTGCTGAGCATCATCGCTGC+TGG | + | chr8.4:49351327-49351346 | MS.gene38955:CDS | 60.0% | |
| ! | AGCAGCATTGGAGAGCACGG+AGG | - | chr8.4:49351442-49351461 | None:intergenic | 60.0% |
| !! | GGTGGCGGAGTATCGTTAGG+AGG | - | chr8.4:49352500-49352519 | None:intergenic | 60.0% |
| TCCAATGCTGCTCCTGCCGG+AGG | + | chr8.4:49351450-49351469 | MS.gene38955:CDS | 65.0% | |
| TCCTCCGGCAGGAGCAGCAT+TGG | - | chr8.4:49351454-49351473 | None:intergenic | 65.0% | |
| TCCTGCCGGAGGACCTTCGT+TGG | + | chr8.4:49351461-49351480 | MS.gene38955:CDS | 65.0% | |
| GCCAACGAAGGTCCTCCGGC+AGG | - | chr8.4:49351465-49351484 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 49351201 | 49352622 | 49351201 | ID=MS.gene38955 |
| chr8.4 | mRNA | 49351201 | 49352622 | 49351201 | ID=MS.gene38955.t1;Parent=MS.gene38955 |
| chr8.4 | exon | 49351201 | 49351596 | 49351201 | ID=MS.gene38955.t1.exon1;Parent=MS.gene38955.t1 |
| chr8.4 | CDS | 49351201 | 49351596 | 49351201 | ID=cds.MS.gene38955.t1;Parent=MS.gene38955.t1 |
| chr8.4 | exon | 49351834 | 49352622 | 49351834 | ID=MS.gene38955.t1.exon2;Parent=MS.gene38955.t1 |
| chr8.4 | CDS | 49351834 | 49352622 | 49351834 | ID=cds.MS.gene38955.t1;Parent=MS.gene38955.t1 |
| Gene Sequence |
| Protein sequence |
