Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39023.t1 | ABN08552.1 | 96.6 | 551 | 17 | 1 | 1 | 551 | 1 | 549 | 4.90E-303 | 1049.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39023.t1 | Q9FF61 | 57.0 | 586 | 201 | 8 | 1 | 551 | 42 | 611 | 1.0e-176 | 621.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39023.t1 | G7L5V8 | 96.6 | 551 | 17 | 1 | 1 | 551 | 1 | 549 | 3.5e-303 | 1049.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene39023.t1 | TR | SNF2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene39023 | MS.gene56890 | PPI |
MS.gene045588 | MS.gene39023 | PPI |
MS.gene39023 | MS.gene033197 | PPI |
MS.gene39023 | MS.gene56938 | PPI |
MS.gene60321 | MS.gene39023 | PPI |
MS.gene43230 | MS.gene39023 | PPI |
MS.gene031700 | MS.gene39023 | PPI |
MS.gene006607 | MS.gene39023 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39023.t1 | MTR_7g089190 | 96.552 | 551 | 17 | 1 | 1 | 551 | 1 | 549 | 0.0 | 1108 |
MS.gene39023.t1 | MTR_1g044120 | 32.432 | 370 | 215 | 7 | 195 | 530 | 463 | 831 | 1.17e-56 | 205 |
MS.gene39023.t1 | MTR_2g084630 | 27.482 | 564 | 322 | 12 | 53 | 530 | 158 | 720 | 1.44e-56 | 205 |
MS.gene39023.t1 | MTR_2g084630 | 27.273 | 572 | 319 | 13 | 53 | 530 | 158 | 726 | 1.52e-56 | 205 |
MS.gene39023.t1 | MTR_2g012830 | 29.613 | 439 | 187 | 9 | 188 | 530 | 536 | 948 | 3.09e-51 | 189 |
MS.gene39023.t1 | MTR_1g115215 | 38.596 | 171 | 100 | 1 | 365 | 530 | 522 | 692 | 8.07e-33 | 134 |
MS.gene39023.t1 | MTR_4g118845 | 28.169 | 284 | 169 | 8 | 253 | 530 | 209 | 463 | 9.43e-24 | 106 |
MS.gene39023.t1 | MTR_4g035100 | 28.520 | 277 | 162 | 7 | 253 | 508 | 1471 | 1732 | 9.44e-24 | 107 |
MS.gene39023.t1 | MTR_4g035100 | 28.520 | 277 | 162 | 7 | 253 | 508 | 1471 | 1732 | 9.53e-24 | 106 |
MS.gene39023.t1 | MTR_4g118845 | 28.169 | 284 | 169 | 8 | 253 | 530 | 22 | 276 | 1.00e-23 | 106 |
MS.gene39023.t1 | MTR_2g020000 | 27.562 | 283 | 172 | 7 | 253 | 530 | 212 | 466 | 1.97e-22 | 102 |
MS.gene39023.t1 | MTR_1g053955 | 28.082 | 292 | 169 | 10 | 252 | 530 | 541 | 804 | 3.05e-21 | 99.0 |
MS.gene39023.t1 | MTR_7g090960 | 25.581 | 301 | 176 | 9 | 253 | 530 | 518 | 793 | 7.35e-21 | 97.8 |
MS.gene39023.t1 | MTR_7g090960 | 25.581 | 301 | 176 | 9 | 253 | 530 | 599 | 874 | 7.88e-21 | 97.4 |
MS.gene39023.t1 | MTR_5g067980 | 30.808 | 198 | 109 | 4 | 296 | 465 | 487 | 684 | 3.08e-20 | 95.9 |
MS.gene39023.t1 | MTR_4g078495 | 25.597 | 293 | 164 | 11 | 191 | 469 | 119 | 371 | 4.15e-18 | 88.6 |
MS.gene39023.t1 | MTR_4g078460 | 24.573 | 293 | 167 | 9 | 191 | 469 | 405 | 657 | 4.80e-18 | 88.6 |
MS.gene39023.t1 | MTR_4g078460 | 24.573 | 293 | 167 | 9 | 191 | 469 | 405 | 657 | 5.14e-18 | 88.6 |
MS.gene39023.t1 | MTR_4g049500 | 28.571 | 196 | 103 | 3 | 370 | 528 | 455 | 650 | 6.76e-18 | 88.2 |
MS.gene39023.t1 | MTR_4g049500 | 31.667 | 120 | 78 | 1 | 252 | 367 | 260 | 379 | 8.89e-15 | 78.2 |
MS.gene39023.t1 | MTR_1g035330 | 24.815 | 270 | 163 | 7 | 250 | 502 | 214 | 460 | 8.30e-18 | 87.4 |
MS.gene39023.t1 | MTR_5g090090 | 25.256 | 293 | 172 | 9 | 254 | 530 | 639 | 900 | 1.02e-17 | 87.8 |
MS.gene39023.t1 | MTR_5g090090 | 25.256 | 293 | 172 | 9 | 254 | 530 | 639 | 900 | 1.28e-17 | 87.4 |
MS.gene39023.t1 | MTR_1g013190 | 25.163 | 306 | 169 | 9 | 254 | 531 | 308 | 581 | 1.30e-17 | 87.4 |
MS.gene39023.t1 | MTR_3g053910 | 25.172 | 290 | 176 | 7 | 254 | 530 | 593 | 854 | 1.44e-17 | 87.4 |
MS.gene39023.t1 | MTR_3g053910 | 25.172 | 290 | 176 | 7 | 254 | 530 | 622 | 883 | 1.61e-17 | 87.0 |
MS.gene39023.t1 | MTR_3g106210 | 23.548 | 310 | 179 | 8 | 254 | 536 | 310 | 588 | 2.08e-16 | 83.6 |
MS.gene39023.t1 | MTR_3g106210 | 23.548 | 310 | 179 | 8 | 254 | 536 | 310 | 588 | 2.10e-16 | 83.6 |
MS.gene39023.t1 | MTR_3g106210 | 23.548 | 310 | 179 | 8 | 254 | 536 | 310 | 588 | 2.66e-16 | 83.2 |
MS.gene39023.t1 | MTR_3g106210 | 23.548 | 310 | 179 | 8 | 254 | 536 | 310 | 588 | 2.75e-16 | 83.2 |
MS.gene39023.t1 | MTR_5g020000 | 22.591 | 301 | 184 | 9 | 253 | 530 | 205 | 479 | 2.92e-16 | 82.8 |
MS.gene39023.t1 | MTR_4g118720 | 25.839 | 298 | 172 | 9 | 253 | 530 | 1026 | 1294 | 4.86e-16 | 82.4 |
MS.gene39023.t1 | MTR_5g005840 | 24.658 | 292 | 180 | 8 | 253 | 530 | 384 | 649 | 2.75e-14 | 76.6 |
MS.gene39023.t1 | MTR_5g004720 | 25.581 | 301 | 183 | 8 | 250 | 530 | 208 | 487 | 5.39e-14 | 75.5 |
MS.gene39023.t1 | MTR_8g030550 | 24.752 | 303 | 183 | 6 | 253 | 530 | 1008 | 1290 | 7.15e-14 | 75.5 |
MS.gene39023.t1 | MTR_8g030550 | 24.752 | 303 | 183 | 6 | 253 | 530 | 1008 | 1290 | 7.26e-14 | 75.5 |
MS.gene39023.t1 | MTR_7g078090 | 25.407 | 307 | 177 | 10 | 253 | 530 | 1015 | 1298 | 1.10e-13 | 75.1 |
MS.gene39023.t1 | MTR_8g030550 | 24.752 | 303 | 183 | 6 | 253 | 530 | 1008 | 1290 | 1.14e-13 | 74.7 |
MS.gene39023.t1 | MTR_4g096930 | 21.884 | 361 | 212 | 12 | 192 | 537 | 723 | 1028 | 4.02e-13 | 73.2 |
MS.gene39023.t1 | MTR_7g039320 | 26.939 | 245 | 101 | 11 | 199 | 421 | 35 | 223 | 2.00e-12 | 70.5 |
MS.gene39023.t1 | MTR_7g039320 | 26.939 | 245 | 101 | 11 | 199 | 421 | 35 | 223 | 2.12e-12 | 70.5 |
MS.gene39023.t1 | MTR_1g080420 | 26.394 | 269 | 156 | 8 | 252 | 492 | 612 | 866 | 2.61e-12 | 70.5 |
MS.gene39023.t1 | MTR_1g080420 | 26.394 | 269 | 156 | 8 | 252 | 492 | 743 | 997 | 3.06e-12 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39023.t1 | AT5G05130 | 56.143 | 586 | 206 | 8 | 1 | 551 | 42 | 611 | 0.0 | 639 |
MS.gene39023.t1 | AT5G22750 | 34.884 | 387 | 194 | 7 | 202 | 530 | 347 | 733 | 1.57e-58 | 211 |
MS.gene39023.t1 | AT5G43530 | 32.632 | 380 | 216 | 9 | 190 | 530 | 604 | 982 | 4.79e-56 | 204 |
MS.gene39023.t1 | AT1G11100 | 32.447 | 376 | 190 | 9 | 193 | 531 | 532 | 880 | 1.90e-52 | 193 |
MS.gene39023.t1 | AT1G11100 | 32.447 | 376 | 190 | 9 | 193 | 531 | 389 | 737 | 1.91e-52 | 193 |
MS.gene39023.t1 | AT1G61140 | 28.538 | 431 | 187 | 8 | 195 | 530 | 390 | 794 | 2.34e-49 | 184 |
MS.gene39023.t1 | AT1G61140 | 28.538 | 431 | 187 | 8 | 195 | 530 | 548 | 952 | 2.63e-49 | 184 |
MS.gene39023.t1 | AT1G61140 | 28.538 | 431 | 187 | 8 | 195 | 530 | 555 | 959 | 2.79e-49 | 184 |
MS.gene39023.t1 | AT3G16600 | 29.640 | 361 | 175 | 7 | 195 | 530 | 45 | 351 | 2.55e-45 | 169 |
MS.gene39023.t1 | AT1G02670 | 30.696 | 316 | 165 | 7 | 252 | 528 | 144 | 444 | 6.87e-37 | 144 |
MS.gene39023.t1 | AT1G02670 | 30.503 | 318 | 167 | 7 | 250 | 528 | 115 | 417 | 1.94e-36 | 144 |
MS.gene39023.t1 | AT1G02670 | 30.063 | 316 | 167 | 6 | 252 | 528 | 144 | 444 | 2.49e-36 | 144 |
MS.gene39023.t1 | AT1G02670 | 30.503 | 318 | 167 | 7 | 250 | 528 | 115 | 417 | 2.81e-36 | 144 |
MS.gene39023.t1 | AT1G02670 | 30.503 | 318 | 167 | 7 | 250 | 528 | 142 | 444 | 3.43e-36 | 144 |
MS.gene39023.t1 | AT1G50410 | 39.766 | 171 | 98 | 1 | 365 | 530 | 466 | 636 | 4.90e-33 | 135 |
MS.gene39023.t1 | AT1G50410 | 27.652 | 264 | 101 | 9 | 195 | 406 | 218 | 443 | 4.26e-16 | 82.4 |
MS.gene39023.t1 | AT1G50410 | 39.766 | 171 | 98 | 1 | 365 | 530 | 466 | 636 | 5.84e-33 | 134 |
MS.gene39023.t1 | AT1G50410 | 27.652 | 264 | 101 | 9 | 195 | 406 | 218 | 443 | 6.37e-16 | 82.0 |
MS.gene39023.t1 | AT1G50410 | 39.766 | 171 | 98 | 1 | 365 | 530 | 466 | 636 | 5.84e-33 | 134 |
MS.gene39023.t1 | AT1G50410 | 27.652 | 264 | 101 | 9 | 195 | 406 | 218 | 443 | 6.37e-16 | 82.0 |
MS.gene39023.t1 | AT1G50410 | 39.766 | 171 | 98 | 1 | 365 | 530 | 466 | 636 | 5.84e-33 | 134 |
MS.gene39023.t1 | AT1G50410 | 27.652 | 264 | 101 | 9 | 195 | 406 | 218 | 443 | 6.37e-16 | 82.0 |
MS.gene39023.t1 | AT1G11100 | 37.572 | 173 | 103 | 1 | 364 | 531 | 752 | 924 | 1.52e-30 | 127 |
MS.gene39023.t1 | AT1G11100 | 37.572 | 173 | 103 | 1 | 364 | 531 | 751 | 923 | 1.57e-30 | 127 |
MS.gene39023.t1 | AT3G20010 | 40.116 | 172 | 98 | 1 | 364 | 530 | 245 | 416 | 1.68e-30 | 127 |
MS.gene39023.t1 | AT1G11100 | 37.572 | 173 | 103 | 1 | 364 | 531 | 609 | 781 | 1.93e-30 | 127 |
MS.gene39023.t1 | AT3G20010 | 40.116 | 172 | 98 | 1 | 364 | 530 | 270 | 441 | 2.22e-30 | 126 |
MS.gene39023.t1 | AT3G20010 | 40.116 | 172 | 98 | 1 | 364 | 530 | 536 | 707 | 2.29e-30 | 127 |
MS.gene39023.t1 | AT3G20010 | 40.116 | 172 | 98 | 1 | 364 | 530 | 536 | 707 | 2.29e-30 | 127 |
MS.gene39023.t1 | AT3G20010 | 40.116 | 172 | 98 | 1 | 364 | 530 | 536 | 707 | 2.29e-30 | 127 |
MS.gene39023.t1 | AT3G20010 | 40.116 | 172 | 98 | 1 | 364 | 530 | 536 | 707 | 3.00e-30 | 126 |
MS.gene39023.t1 | AT3G20010 | 40.116 | 172 | 98 | 1 | 364 | 530 | 536 | 707 | 3.00e-30 | 126 |
MS.gene39023.t1 | AT3G20010 | 40.116 | 172 | 98 | 1 | 364 | 530 | 536 | 707 | 3.00e-30 | 126 |
MS.gene39023.t1 | AT1G02670 | 37.705 | 183 | 92 | 5 | 252 | 424 | 144 | 314 | 8.55e-30 | 124 |
MS.gene39023.t1 | AT1G02670 | 37.705 | 183 | 92 | 5 | 252 | 424 | 155 | 325 | 1.05e-29 | 124 |
MS.gene39023.t1 | AT3G54280 | 28.520 | 277 | 166 | 7 | 253 | 510 | 1503 | 1766 | 9.86e-26 | 113 |
MS.gene39023.t1 | AT3G54280 | 28.520 | 277 | 166 | 7 | 253 | 510 | 1472 | 1735 | 1.11e-25 | 112 |
MS.gene39023.t1 | AT2G40770 | 29.682 | 283 | 150 | 9 | 296 | 531 | 499 | 779 | 1.33e-25 | 112 |
MS.gene39023.t1 | AT2G40770 | 29.682 | 283 | 150 | 9 | 296 | 531 | 499 | 779 | 1.33e-25 | 112 |
MS.gene39023.t1 | AT2G40770 | 29.682 | 283 | 150 | 9 | 296 | 531 | 499 | 779 | 1.33e-25 | 112 |
MS.gene39023.t1 | AT5G18620 | 28.873 | 284 | 167 | 9 | 253 | 530 | 215 | 469 | 1.25e-22 | 103 |
MS.gene39023.t1 | AT5G18620 | 28.873 | 284 | 167 | 9 | 253 | 530 | 215 | 469 | 1.30e-22 | 103 |
MS.gene39023.t1 | AT3G06400 | 28.169 | 284 | 169 | 8 | 253 | 530 | 210 | 464 | 6.14e-22 | 100 |
MS.gene39023.t1 | AT3G06400 | 28.169 | 284 | 169 | 8 | 253 | 530 | 210 | 464 | 6.37e-22 | 100 |
MS.gene39023.t1 | AT3G06400 | 28.169 | 284 | 169 | 8 | 253 | 530 | 210 | 464 | 6.42e-22 | 100 |
MS.gene39023.t1 | AT3G12810 | 28.082 | 292 | 167 | 10 | 253 | 530 | 553 | 815 | 1.68e-20 | 96.7 |
MS.gene39023.t1 | AT3G12810 | 28.082 | 292 | 167 | 10 | 253 | 530 | 557 | 819 | 1.68e-20 | 96.7 |
MS.gene39023.t1 | AT2G02090 | 27.547 | 265 | 155 | 8 | 250 | 500 | 232 | 473 | 1.04e-19 | 93.6 |
MS.gene39023.t1 | AT1G03750 | 25.952 | 289 | 159 | 9 | 195 | 469 | 132 | 379 | 1.77e-19 | 93.2 |
MS.gene39023.t1 | AT4G31900 | 26.756 | 299 | 169 | 10 | 254 | 541 | 247 | 506 | 2.36e-18 | 89.7 |
MS.gene39023.t1 | AT4G31900 | 26.756 | 299 | 169 | 10 | 254 | 541 | 247 | 506 | 2.45e-18 | 89.7 |
MS.gene39023.t1 | AT4G31900 | 26.756 | 299 | 169 | 10 | 254 | 541 | 206 | 465 | 2.48e-18 | 89.7 |
MS.gene39023.t1 | AT3G57300 | 23.920 | 301 | 181 | 9 | 253 | 530 | 607 | 882 | 3.23e-18 | 89.4 |
MS.gene39023.t1 | AT3G57300 | 23.920 | 301 | 181 | 9 | 253 | 530 | 607 | 882 | 3.26e-18 | 89.4 |
MS.gene39023.t1 | AT3G57300 | 23.920 | 301 | 181 | 9 | 253 | 530 | 607 | 882 | 3.26e-18 | 89.4 |
MS.gene39023.t1 | AT1G05120 | 30.769 | 182 | 82 | 5 | 187 | 366 | 167 | 306 | 3.56e-18 | 89.0 |
MS.gene39023.t1 | AT1G05120 | 28.061 | 196 | 104 | 3 | 370 | 528 | 397 | 592 | 1.61e-16 | 83.6 |
MS.gene39023.t1 | AT1G05120 | 30.769 | 182 | 82 | 5 | 187 | 366 | 124 | 263 | 3.57e-18 | 89.0 |
MS.gene39023.t1 | AT1G05120 | 28.061 | 196 | 104 | 3 | 370 | 528 | 354 | 549 | 1.44e-16 | 84.0 |
MS.gene39023.t1 | AT3G54460 | 26.786 | 224 | 153 | 6 | 296 | 510 | 456 | 677 | 3.96e-17 | 85.9 |
MS.gene39023.t1 | AT3G54460 | 26.786 | 224 | 153 | 6 | 296 | 510 | 753 | 974 | 4.22e-17 | 85.9 |
MS.gene39023.t1 | AT2G44980 | 25.914 | 301 | 176 | 12 | 257 | 537 | 77 | 350 | 6.27e-17 | 85.1 |
MS.gene39023.t1 | AT2G28290 | 25.843 | 356 | 186 | 12 | 195 | 530 | 746 | 1043 | 6.81e-17 | 85.5 |
MS.gene39023.t1 | AT2G28290 | 25.843 | 356 | 186 | 12 | 195 | 530 | 746 | 1043 | 7.43e-17 | 85.1 |
MS.gene39023.t1 | AT2G28290 | 25.843 | 356 | 186 | 12 | 195 | 530 | 746 | 1043 | 7.43e-17 | 85.1 |
MS.gene39023.t1 | AT2G28290 | 25.843 | 356 | 186 | 12 | 195 | 530 | 747 | 1044 | 7.50e-17 | 85.1 |
MS.gene39023.t1 | AT2G28290 | 26.124 | 356 | 185 | 12 | 195 | 530 | 746 | 1043 | 7.70e-17 | 85.1 |
MS.gene39023.t1 | AT2G28290 | 26.124 | 356 | 185 | 12 | 195 | 530 | 747 | 1044 | 7.90e-17 | 85.1 |
MS.gene39023.t1 | AT2G13370 | 24.232 | 293 | 175 | 8 | 254 | 530 | 647 | 908 | 8.24e-17 | 85.1 |
MS.gene39023.t1 | AT2G13370 | 24.232 | 293 | 175 | 8 | 254 | 530 | 647 | 908 | 8.24e-17 | 85.1 |
MS.gene39023.t1 | AT2G13370 | 24.232 | 293 | 175 | 8 | 254 | 530 | 647 | 908 | 8.24e-17 | 85.1 |
MS.gene39023.t1 | AT2G44980 | 25.559 | 313 | 177 | 13 | 254 | 537 | 73 | 358 | 1.44e-16 | 84.0 |
MS.gene39023.t1 | AT2G44980 | 25.806 | 310 | 174 | 13 | 257 | 537 | 77 | 359 | 3.92e-16 | 82.4 |
MS.gene39023.t1 | AT3G06010 | 24.090 | 357 | 192 | 11 | 161 | 495 | 361 | 660 | 1.69e-14 | 77.4 |
MS.gene39023.t1 | AT3G57300 | 22.024 | 336 | 177 | 9 | 253 | 530 | 607 | 915 | 2.79e-14 | 76.6 |
MS.gene39023.t1 | AT2G25170 | 23.985 | 271 | 150 | 7 | 254 | 495 | 312 | 555 | 3.21e-14 | 76.6 |
MS.gene39023.t1 | AT2G25170 | 23.985 | 271 | 150 | 7 | 254 | 495 | 321 | 564 | 3.53e-14 | 76.6 |
MS.gene39023.t1 | AT2G25170 | 23.985 | 271 | 150 | 7 | 254 | 495 | 295 | 538 | 3.87e-14 | 76.3 |
MS.gene39023.t1 | AT2G25170 | 23.985 | 271 | 150 | 7 | 254 | 495 | 295 | 538 | 3.87e-14 | 76.3 |
MS.gene39023.t1 | AT5G19310 | 23.453 | 307 | 191 | 11 | 253 | 543 | 143 | 421 | 2.70e-13 | 73.2 |
MS.gene39023.t1 | AT5G19310 | 23.453 | 307 | 191 | 11 | 253 | 543 | 407 | 685 | 3.52e-13 | 73.2 |
MS.gene39023.t1 | AT5G66750 | 25.203 | 246 | 136 | 8 | 253 | 475 | 223 | 443 | 5.22e-13 | 72.4 |
MS.gene39023.t1 | AT5G44800 | 22.346 | 358 | 208 | 12 | 195 | 537 | 681 | 983 | 3.17e-12 | 70.5 |
MS.gene39023.t1 | AT2G46020 | 23.954 | 263 | 160 | 8 | 253 | 496 | 1002 | 1243 | 1.41e-11 | 68.2 |
MS.gene39023.t1 | AT2G46020 | 23.954 | 263 | 160 | 8 | 253 | 496 | 1002 | 1243 | 1.41e-11 | 68.2 |
MS.gene39023.t1 | AT2G46020 | 23.954 | 263 | 160 | 8 | 253 | 496 | 1002 | 1243 | 1.41e-11 | 68.2 |
MS.gene39023.t1 | AT2G46020 | 24.242 | 264 | 159 | 9 | 253 | 496 | 1002 | 1244 | 7.60e-11 | 65.9 |
MS.gene39023.t1 | AT2G46020 | 24.242 | 264 | 159 | 9 | 253 | 496 | 1002 | 1244 | 7.60e-11 | 65.9 |
MS.gene39023.t1 | AT2G46020 | 24.242 | 264 | 159 | 9 | 253 | 496 | 1002 | 1244 | 7.60e-11 | 65.9 |
Find 0 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAATGAAAATGAAAAGT+GGG | - | 50868:2326-2345 | MS.gene39023:CDS | 15.0% |
!!! | GTTTTTACTATTATTATTAC+CGG | + | 50868:1996-2015 | MS.gene39023:intergenic | 15.0% |
!! | AAACCAAAAAACAGAATAAT+TGG | + | 50868:2995-3014 | MS.gene39023:intergenic | 20.0% |
!! | CAATAACTCTTAATAGAAAA+CGG | + | 50868:2784-2803 | MS.gene39023:intergenic | 20.0% |
!! | GATAAAATGAAAATGAAAAG+TGG | - | 50868:2325-2344 | MS.gene39023:CDS | 20.0% |
!! | TTGAAGGTTTATATGTATTA+TGG | - | 50868:2475-2494 | MS.gene39023:CDS | 20.0% |
!! | TTTATATGTATTATGGTGAT+AGG | - | 50868:2482-2501 | MS.gene39023:CDS | 20.0% |
!!! | AATTATTCTGTTTTTTGGTT+TGG | - | 50868:2994-3013 | MS.gene39023:CDS | 20.0% |
! | AATTCAATTCATTGAGCAAA+AGG | + | 50868:2946-2965 | MS.gene39023:intergenic | 25.0% |
! | ATACGAAATGAAATGAACAT+TGG | + | 50868:1891-1910 | MS.gene39023:intergenic | 25.0% |
! | ATTTAATAATGCTAGAAGGA+GGG | + | 50868:2087-2106 | MS.gene39023:intergenic | 25.0% |
! | TAGAATCATACTTAGTATAG+TGG | + | 50868:3268-3287 | MS.gene39023:intergenic | 25.0% |
! | TCTGATTTAATAATGCTAGA+AGG | + | 50868:2091-2110 | MS.gene39023:intergenic | 25.0% |
!! | CGTTTTCTATTAAGAGTTAT+TGG | - | 50868:2782-2801 | MS.gene39023:CDS | 25.0% |
!! | GGTTTTACTTACTCTTTTTT+GGG | - | 50868:3049-3068 | MS.gene39023:CDS | 25.0% |
!!! | ATTTTTTACTTGCATGTGTA+GGG | - | 50868:2895-2914 | MS.gene39023:CDS | 25.0% |
!!! | TGACCAATTATTCTGTTTTT+TGG | - | 50868:2989-3008 | MS.gene39023:CDS | 25.0% |
!!! | TGGTTTTACTTACTCTTTTT+TGG | - | 50868:3048-3067 | MS.gene39023:CDS | 25.0% |
!!! | TTATGACTTGTTTTCTCTTA+TGG | - | 50868:2741-2760 | MS.gene39023:CDS | 25.0% |
ATATGTATTATGGTGATAGG+AGG | - | 50868:2485-2504 | MS.gene39023:CDS | 30.0% | |
CGAGTTTGAAAATTTGATCT+AGG | + | 50868:2018-2037 | MS.gene39023:intergenic | 30.0% | |
GATTTAATAATGCTAGAAGG+AGG | + | 50868:2088-2107 | MS.gene39023:intergenic | 30.0% | |
TAAGCGCTTGTTTGTTTATA+TGG | - | 50868:3028-3047 | MS.gene39023:CDS | 30.0% | |
TACGATCAAGAATGTTAATG+CGG | - | 50868:2642-2661 | MS.gene39023:CDS | 30.0% | |
TCATAAGAACCATTCTGAAT+AGG | + | 50868:2727-2746 | MS.gene39023:intergenic | 30.0% | |
TTGACTACTTATGCTACATT+GGG | - | 50868:2547-2566 | MS.gene39023:CDS | 30.0% | |
!!! | CATTTTTTACTTGCATGTGT+AGG | - | 50868:2894-2913 | MS.gene39023:CDS | 30.0% |
!!! | TTACTTACTCTTTTTTGGGT+AGG | - | 50868:3053-3072 | MS.gene39023:CDS | 30.0% |
!!! | TTTTTTACTTGCATGTGTAG+GGG | - | 50868:2896-2915 | MS.gene39023:CDS | 30.0% |
ACGATCAAGAATGTTAATGC+GGG | - | 50868:2643-2662 | MS.gene39023:CDS | 35.0% | |
ACTGTATGATGAGGTTAAAG+AGG | - | 50868:3185-3204 | MS.gene39023:CDS | 35.0% | |
AGAACGTAAACTGTATGATG+AGG | - | 50868:3176-3195 | MS.gene39023:CDS | 35.0% | |
ATACTCCTGTGAAGAAATTG+GGG | - | 50868:2590-2609 | MS.gene39023:CDS | 35.0% | |
ATGAAAAGTGGGAAGAAAAG+AGG | - | 50868:2337-2356 | MS.gene39023:CDS | 35.0% | |
CGAAGATATGAATCTGACAA+GGG | + | 50868:1823-1842 | MS.gene39023:intergenic | 35.0% | |
CGAATTATCAAACTAATGCG+CGG | - | 50868:2221-2240 | MS.gene39023:CDS | 35.0% | |
CTTAATCAAGGAAAACAGAC+CGG | - | 50868:2826-2845 | MS.gene39023:CDS | 35.0% | |
GAATGAGAAAGAGTAAACGA+AGG | + | 50868:1920-1939 | MS.gene39023:intergenic | 35.0% | |
GATACTCCTGTGAAGAAATT+GGG | - | 50868:2589-2608 | MS.gene39023:CDS | 35.0% | |
GTTGACTACTTATGCTACAT+TGG | - | 50868:2546-2565 | MS.gene39023:CDS | 35.0% | |
GTTTAACGGTTCAGAAACTA+GGG | + | 50868:2065-2084 | MS.gene39023:intergenic | 35.0% | |
TAAGAGTTATTGGCAAAGCT+TGG | - | 50868:2792-2811 | MS.gene39023:CDS | 35.0% | |
TATGAATCTGACAAGGGATA+CGG | + | 50868:1817-1836 | MS.gene39023:intergenic | 35.0% | |
TGACAAGTCTCAACAATCTT+AGG | + | 50868:3138-3157 | MS.gene39023:intergenic | 35.0% | |
TTAACGTTGCTATCGTTGAT+TGG | - | 50868:2298-2317 | MS.gene39023:CDS | 35.0% | |
TTAATCAAGGAAAACAGACC+GGG | - | 50868:2827-2846 | MS.gene39023:CDS | 35.0% | |
TTCGACATGGATAACTCAAT+TGG | - | 50868:2429-2448 | MS.gene39023:CDS | 35.0% | |
! | GTCTGTTTTCCTTGATTAAG+AGG | + | 50868:2826-2845 | MS.gene39023:intergenic | 35.0% |
!! | TGATTTTTCGATGGTTCCTT+TGG | - | 50868:3308-3327 | MS.gene39023:CDS | 35.0% |
!! | TTTTGGGTAGGTTTTGATGT+CGG | - | 50868:3065-3084 | MS.gene39023:CDS | 35.0% |
AAAGTGGGAAGAAAAGAGGT+AGG | - | 50868:2341-2360 | MS.gene39023:CDS | 40.0% | |
AACACTCAAACACTCCAAGT+CGG | - | 50868:1683-1702 | MS.gene39023:CDS | 40.0% | |
AAGAACCAAAGACACTGCAT+TGG | - | 50868:3101-3120 | MS.gene39023:CDS | 40.0% | |
AAGTGGGAAGAAAAGAGGTA+GGG | - | 50868:2342-2361 | MS.gene39023:CDS | 40.0% | |
AGACACGACTTGAAATCCAA+AGG | + | 50868:3327-3346 | MS.gene39023:intergenic | 40.0% | |
ATCCATGTCGAAATCACAGA+AGG | + | 50868:2421-2440 | MS.gene39023:intergenic | 40.0% | |
ATGCTAGAAGGAGGGTTTAA+CGG | + | 50868:2079-2098 | MS.gene39023:intergenic | 40.0% | |
CAAGTCTCAACAATCTTAGG+TGG | + | 50868:3135-3154 | MS.gene39023:intergenic | 40.0% | |
GACATGGATAACTCAATTGG+AGG | - | 50868:2432-2451 | MS.gene39023:CDS | 40.0% | |
GCGAAGATATGAATCTGACA+AGG | + | 50868:1824-1843 | MS.gene39023:intergenic | 40.0% | |
GGATACTCCTGTGAAGAAAT+TGG | - | 50868:2588-2607 | MS.gene39023:CDS | 40.0% | |
GGTTTAACGGTTCAGAAACT+AGG | + | 50868:2066-2085 | MS.gene39023:intergenic | 40.0% | |
GTTATTGTTAGAGCGAGTGT+TGG | + | 50868:1789-1808 | MS.gene39023:intergenic | 40.0% | |
TATAAACCTTCAACGTGCCA+CGG | + | 50868:2468-2487 | MS.gene39023:intergenic | 40.0% | |
TTGGAGTCGTATGGGTTTAA+AGG | + | 50868:1647-1666 | MS.gene39023:intergenic | 40.0% | |
TTTGAATGCGAAGAGGAGAT+GGG | - | 50868:2687-2706 | MS.gene39023:CDS | 40.0% | |
! | GCTGTTCATGACGCTTTTAA+CGG | - | 50868:1863-1882 | MS.gene39023:intron | 40.0% |
! | TGATTGCTTTGAATGCGAAG+AGG | - | 50868:2680-2699 | MS.gene39023:CDS | 40.0% |
!! | ACCAAAAAGAAGCACTAGGA+TGG | - | 50868:2122-2141 | MS.gene39023:CDS | 40.0% |
!! | TGATGATTTACCGCCGTTTT+GGG | - | 50868:2165-2184 | MS.gene39023:CDS | 40.0% |
!! | TTGAGTGTTGAGGACTTTGA+TGG | + | 50868:1672-1691 | MS.gene39023:intergenic | 40.0% |
!!! | AAACTAGGGTTTTGGAAGCT+AGG | + | 50868:2051-2070 | MS.gene39023:intergenic | 40.0% |
!!! | GATCTGTGCTGATTTTTCGA+TGG | - | 50868:3299-3318 | MS.gene39023:CDS | 40.0% |
AACCAAAGACACTGCATTGG+TGG | - | 50868:3104-3123 | MS.gene39023:CDS | 45.0% | |
AGTGGGAAGAAAAGAGGTAG+GGG | - | 50868:2343-2362 | MS.gene39023:CDS | 45.0% | |
CATGTCGAAATCACAGAAGG+AGG | + | 50868:2418-2437 | MS.gene39023:intergenic | 45.0% | |
CGTATGGGTTTAAAGGTTCG+CGG | + | 50868:1640-1659 | MS.gene39023:intergenic | 45.0% | |
CTCCTTCTGTGATTTCGACA+TGG | - | 50868:2416-2435 | MS.gene39023:CDS | 45.0% | |
CTTTGAATGCGAAGAGGAGA+TGG | - | 50868:2686-2705 | MS.gene39023:CDS | 45.0% | |
GATGTTGGCCATTACGAAAC+CGG | + | 50868:1561-1580 | MS.gene39023:intergenic | 45.0% | |
GTCAGCGCGTGTTTCTTTAA+CGG | + | 50868:1948-1967 | MS.gene39023:intergenic | 45.0% | |
GTCGGCATTAAACACTACTC+CGG | - | 50868:1581-1600 | MS.gene39023:CDS | 45.0% | |
GTGTTTAATGCCGACGATGT+TGG | + | 50868:1576-1595 | MS.gene39023:intergenic | 45.0% | |
GTTCAGCGACCTCTTAATCA+AGG | - | 50868:2814-2833 | MS.gene39023:CDS | 45.0% | |
TTATCAAACTAATGCGCGGC+CGG | - | 50868:2225-2244 | MS.gene39023:CDS | 45.0% | |
TTCGTAATGGCCAACATCGT+CGG | - | 50868:1563-1582 | MS.gene39023:CDS | 45.0% | |
TTGGAGGAACATACTAACCG+TGG | - | 50868:2448-2467 | MS.gene39023:CDS | 45.0% | |
! | ACCAAAGACACTGCATTGGT+GGG | - | 50868:3105-3124 | MS.gene39023:CDS | 45.0% |
! | CGGTTCAGAAACTAGGGTTT+TGG | + | 50868:2059-2078 | MS.gene39023:intergenic | 45.0% |
! | CTGATGATTTACCGCCGTTT+TGG | - | 50868:2164-2183 | MS.gene39023:CDS | 45.0% |
! | CTTGGAGTGTTTGAGTGTTG+AGG | + | 50868:1682-1701 | MS.gene39023:intergenic | 45.0% |
! | GCCATCCTAGTGCTTCTTTT+TGG | + | 50868:2126-2145 | MS.gene39023:intergenic | 45.0% |
! | GTAGGTTTCGGATTGGGATT+GGG | + | 50868:1534-1553 | MS.gene39023:intergenic | 45.0% |
! | TGTTACAGAATCAGCGCTGA+CGG | + | 50868:1972-1991 | MS.gene39023:intergenic | 45.0% |
!! | AGCGCTGATTCTGTAACAAC+CGG | - | 50868:1974-1993 | MS.gene39023:intron | 45.0% |
!! | CAGCACCAAAAAGAAGCACT+AGG | - | 50868:2118-2137 | MS.gene39023:CDS | 45.0% |
!!! | GAGGAGGATTGTTTTGGATG+AGG | - | 50868:2615-2634 | MS.gene39023:CDS | 45.0% |
AGCGCGTGTTTCTTTAACGG+CGG | + | 50868:1945-1964 | MS.gene39023:intergenic | 50.0% | |
AGGGTGGAGAGTGAGACAAA+TGG | - | 50868:2376-2395 | MS.gene39023:CDS | 50.0% | |
AGGTAGGGGTAGTGTAGAGA+GGG | - | 50868:2357-2376 | MS.gene39023:CDS | 50.0% | |
CCCTCTTTCTCCTCCCAAAA+CGG | + | 50868:2181-2200 | MS.gene39023:intergenic | 50.0% | |
CTACATTGGGAGCTGAGTTG+CGG | - | 50868:2560-2579 | MS.gene39023:CDS | 50.0% | |
CTCAAGATGCTGAGGAGTTG+AGG | - | 50868:2509-2528 | MS.gene39023:CDS | 50.0% | |
CTCCACCCCAATTTCTTCAC+AGG | + | 50868:2598-2617 | MS.gene39023:intergenic | 50.0% | |
CTCCTGTGAAGAAATTGGGG+TGG | - | 50868:2593-2612 | MS.gene39023:CDS | 50.0% | |
CTGTGAAGAAATTGGGGTGG+AGG | - | 50868:2596-2615 | MS.gene39023:CDS | 50.0% | |
GGATTAAGCCGAGGATTTCG+CGG | + | 50868:1619-1638 | MS.gene39023:intergenic | 50.0% | |
TACTAACCGTGGCACGTTGA+AGG | - | 50868:2459-2478 | MS.gene39023:CDS | 50.0% | |
TAGGAGGACTCAAGATGCTG+AGG | - | 50868:2501-2520 | MS.gene39023:CDS | 50.0% | |
TCTCTCGGGAGGGATATTTG+CGG | - | 50868:2252-2271 | MS.gene39023:CDS | 50.0% | |
TCTTTCTCCTCCCAAAACGG+CGG | + | 50868:2178-2197 | MS.gene39023:intergenic | 50.0% | |
TGAAGAAATTGGGGTGGAGG+AGG | - | 50868:2599-2618 | MS.gene39023:CDS | 50.0% | |
TGTTAATGCGGGACAGAGTC+AGG | - | 50868:2654-2673 | MS.gene39023:CDS | 50.0% | |
TTTGAACGATGGCTTCGACG+TGG | + | 50868:1766-1785 | MS.gene39023:intergenic | 50.0% | |
! | CCAAAGACACTGCATTGGTG+GGG | - | 50868:3106-3125 | MS.gene39023:CDS | 50.0% |
! | GGTAGGTTTCGGATTGGGAT+TGG | + | 50868:1535-1554 | MS.gene39023:intergenic | 50.0% |
! | TACCTGCAATCGACTCATCC+CGG | + | 50868:2848-2867 | MS.gene39023:intergenic | 50.0% |
! | TCGGATTGGGATTGGGAGAA+GGG | + | 50868:1527-1546 | MS.gene39023:intergenic | 50.0% |
! | TGATGGCGTTGGAGTCGTAT+GGG | + | 50868:1655-1674 | MS.gene39023:intergenic | 50.0% |
! | TTCGGATTGGGATTGGGAGA+AGG | + | 50868:1528-1547 | MS.gene39023:intergenic | 50.0% |
!! | AAGAGGAGATGGGCTGTTAC+GGG | - | 50868:2697-2716 | MS.gene39023:CDS | 50.0% |
!! | ATGATATGAGCGTCGAGGAG+AGG | + | 50868:1743-1762 | MS.gene39023:intergenic | 50.0% |
!! | GAAGAGGAGATGGGCTGTTA+CGG | - | 50868:2696-2715 | MS.gene39023:CDS | 50.0% |
!! | GCGAGTGTTGGTTTGAACGA+TGG | + | 50868:1777-1796 | MS.gene39023:intergenic | 50.0% |
!! | GTTGAGGACTTTGATGGCGT+TGG | + | 50868:1666-1685 | MS.gene39023:intergenic | 50.0% |
!! | TGATTTACCGCCGTTTTGGG+AGG | - | 50868:2168-2187 | MS.gene39023:CDS | 50.0% |
!! | TTGATGGCGTTGGAGTCGTA+TGG | + | 50868:1656-1675 | MS.gene39023:intergenic | 50.0% |
!!! | CCGTTTTGGGAGGAGAAAGA+GGG | - | 50868:2178-2197 | MS.gene39023:CDS | 50.0% |
!!! | CGTTTTGGGAGGAGAAAGAG+GGG | - | 50868:2179-2198 | MS.gene39023:CDS | 50.0% |
ACGGGGACGCCTATTCAGAA+TGG | - | 50868:2715-2734 | MS.gene39023:CDS | 55.0% | |
AGGGATATTTGCGGACGGGA+TGG | - | 50868:2261-2280 | MS.gene39023:CDS | 55.0% | |
CAATCCGAAACCTACCTCGC+CGG | - | 50868:1539-1558 | MS.gene39023:CDS | 55.0% | |
CATTACGAAACCGGCGAGGT+AGG | + | 50868:1552-1571 | MS.gene39023:intergenic | 55.0% | |
CCCCACCAATGCAGTGTCTT+TGG | + | 50868:3109-3128 | MS.gene39023:intergenic | 55.0% | |
CGCGTTCGATGTAACCGACT+TGG | + | 50868:1700-1719 | MS.gene39023:intergenic | 55.0% | |
GAAACCGGCGAGGTAGGTTT+CGG | + | 50868:1546-1565 | MS.gene39023:intergenic | 55.0% | |
GAGGTAGGGGTAGTGTAGAG+AGG | - | 50868:2356-2375 | MS.gene39023:CDS | 55.0% | |
GCAAATATCCCTCCCGAGAG+AGG | + | 50868:2253-2272 | MS.gene39023:intergenic | 55.0% | |
GCGTGTTTCTTTAACGGCGG+CGG | + | 50868:1942-1961 | MS.gene39023:intergenic | 55.0% | |
GGCGAGGTAGGTTTCGGATT+GGG | + | 50868:1540-1559 | MS.gene39023:intergenic | 55.0% | |
GGGATATTTGCGGACGGGAT+GGG | - | 50868:2262-2281 | MS.gene39023:CDS | 55.0% | |
TAGGGGTAGTGTAGAGAGGG+TGG | - | 50868:2360-2379 | MS.gene39023:CDS | 55.0% | |
TCGGGAGGGATATTTGCGGA+CGG | - | 50868:2256-2275 | MS.gene39023:CDS | 55.0% | |
TTGCGGACGGGATGGGATTA+GGG | - | 50868:2269-2288 | MS.gene39023:CDS | 55.0% | |
TTTGCGGACGGGATGGGATT+AGG | - | 50868:2268-2287 | MS.gene39023:CDS | 55.0% | |
! | AAGGTTCGCGGATTAAGCCG+AGG | + | 50868:1628-1647 | MS.gene39023:intergenic | 55.0% |
! | CGTGGATGATATGAGCGTCG+AGG | + | 50868:1748-1767 | MS.gene39023:intergenic | 55.0% |
! | GGGGTGGAGGAGGATTGTTT+TGG | - | 50868:2609-2628 | MS.gene39023:CDS | 55.0% |
!! | AGAGGAGATGGGCTGTTACG+GGG | - | 50868:2698-2717 | MS.gene39023:CDS | 55.0% |
!! | CTACCTCGCCGGTTTCGTAA+TGG | - | 50868:1550-1569 | MS.gene39023:CDS | 55.0% |
!!! | GCCGTTTTGGGAGGAGAAAG+AGG | - | 50868:2177-2196 | MS.gene39023:CDS | 55.0% |
ATCACCGGCCGCGAAATCCT+CGG | - | 50868:1608-1627 | MS.gene39023:CDS | 60.0% | |
CACTACTCCGGCACCATCAC+CGG | - | 50868:1593-1612 | MS.gene39023:CDS | 60.0% | |
CGGCGAGGTAGGTTTCGGAT+TGG | + | 50868:1541-1560 | MS.gene39023:intergenic | 60.0% | |
CGGGAGGGATATTTGCGGAC+GGG | - | 50868:2257-2276 | MS.gene39023:CDS | 60.0% | |
GACCGGGATGAGTCGATTGC+AGG | - | 50868:2843-2862 | MS.gene39023:CDS | 60.0% | |
GGGAGCTGAGTTGCGGTGTT+CGG | - | 50868:2567-2586 | MS.gene39023:CDS | 60.0% | |
TAAGCCGAGGATTTCGCGGC+CGG | + | 50868:1615-1634 | MS.gene39023:intergenic | 60.0% | |
TGGCCATTACGAAACCGGCG+AGG | + | 50868:1556-1575 | MS.gene39023:intergenic | 60.0% | |
ATCCCTCCCGAGAGAGGCTC+CGG | + | 50868:2247-2266 | MS.gene39023:intergenic | 65.0% | |
GAGGATTTCGCGGCCGGTGA+TGG | + | 50868:1609-1628 | MS.gene39023:intergenic | 65.0% | |
GTCGAGGAGAGGAGCGAGAG+CGG | + | 50868:1732-1751 | MS.gene39023:intergenic | 65.0% | |
GAGGAGAGGAGCGAGAGCGG+CGG | + | 50868:1729-1748 | MS.gene39023:intergenic | 70.0% | |
! | TTCGCGGCCGGTGATGGTGC+CGG | + | 50868:1603-1622 | MS.gene39023:intergenic | 70.0% |
GGCCGGAGCCTCTCTCGGGA+GGG | - | 50868:2242-2261 | MS.gene39023:CDS | 75.0% | |
TGCGCGGCCGGAGCCTCTCT+CGG | - | 50868:2237-2256 | MS.gene39023:CDS | 75.0% | |
! | CGGCCGGAGCCTCTCTCGGG+AGG | - | 50868:2241-2260 | MS.gene39023:CDS | 80.0% |
! | GCGCGGCCGGAGCCTCTCTC+GGG | - | 50868:2238-2257 | MS.gene39023:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
50868 | gene | 1506 | 3369 | 1506 | ID=MS.gene39023 |
50868 | mRNA | 1506 | 3369 | 1506 | ID=MS.gene39023.t1;Parent=MS.gene39023 |
50868 | exon | 2011 | 3369 | 2011 | ID=MS.gene39023.t1.exon1;Parent=MS.gene39023.t1 |
50868 | CDS | 2011 | 3369 | 2011 | ID=cds.MS.gene39023.t1;Parent=MS.gene39023.t1 |
50868 | exon | 1506 | 1800 | 1506 | ID=MS.gene39023.t1.exon2;Parent=MS.gene39023.t1 |
50868 | CDS | 1506 | 1800 | 1506 | ID=cds.MS.gene39023.t1;Parent=MS.gene39023.t1 |
Gene Sequence |
Protein sequence |