AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39023


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39023.t1 MTR_7g089190 96.552 551 17 1 1 551 1 549 0.0 1108
MS.gene39023.t1 MTR_1g044120 32.432 370 215 7 195 530 463 831 1.17e-56 205
MS.gene39023.t1 MTR_2g084630 27.482 564 322 12 53 530 158 720 1.44e-56 205
MS.gene39023.t1 MTR_2g084630 27.273 572 319 13 53 530 158 726 1.52e-56 205
MS.gene39023.t1 MTR_2g012830 29.613 439 187 9 188 530 536 948 3.09e-51 189
MS.gene39023.t1 MTR_1g115215 38.596 171 100 1 365 530 522 692 8.07e-33 134
MS.gene39023.t1 MTR_4g118845 28.169 284 169 8 253 530 209 463 9.43e-24 106
MS.gene39023.t1 MTR_4g035100 28.520 277 162 7 253 508 1471 1732 9.44e-24 107
MS.gene39023.t1 MTR_4g035100 28.520 277 162 7 253 508 1471 1732 9.53e-24 106
MS.gene39023.t1 MTR_4g118845 28.169 284 169 8 253 530 22 276 1.00e-23 106
MS.gene39023.t1 MTR_2g020000 27.562 283 172 7 253 530 212 466 1.97e-22 102
MS.gene39023.t1 MTR_1g053955 28.082 292 169 10 252 530 541 804 3.05e-21 99.0
MS.gene39023.t1 MTR_7g090960 25.581 301 176 9 253 530 518 793 7.35e-21 97.8
MS.gene39023.t1 MTR_7g090960 25.581 301 176 9 253 530 599 874 7.88e-21 97.4
MS.gene39023.t1 MTR_5g067980 30.808 198 109 4 296 465 487 684 3.08e-20 95.9
MS.gene39023.t1 MTR_4g078495 25.597 293 164 11 191 469 119 371 4.15e-18 88.6
MS.gene39023.t1 MTR_4g078460 24.573 293 167 9 191 469 405 657 4.80e-18 88.6
MS.gene39023.t1 MTR_4g078460 24.573 293 167 9 191 469 405 657 5.14e-18 88.6
MS.gene39023.t1 MTR_4g049500 28.571 196 103 3 370 528 455 650 6.76e-18 88.2
MS.gene39023.t1 MTR_4g049500 31.667 120 78 1 252 367 260 379 8.89e-15 78.2
MS.gene39023.t1 MTR_1g035330 24.815 270 163 7 250 502 214 460 8.30e-18 87.4
MS.gene39023.t1 MTR_5g090090 25.256 293 172 9 254 530 639 900 1.02e-17 87.8
MS.gene39023.t1 MTR_5g090090 25.256 293 172 9 254 530 639 900 1.28e-17 87.4
MS.gene39023.t1 MTR_1g013190 25.163 306 169 9 254 531 308 581 1.30e-17 87.4
MS.gene39023.t1 MTR_3g053910 25.172 290 176 7 254 530 593 854 1.44e-17 87.4
MS.gene39023.t1 MTR_3g053910 25.172 290 176 7 254 530 622 883 1.61e-17 87.0
MS.gene39023.t1 MTR_3g106210 23.548 310 179 8 254 536 310 588 2.08e-16 83.6
MS.gene39023.t1 MTR_3g106210 23.548 310 179 8 254 536 310 588 2.10e-16 83.6
MS.gene39023.t1 MTR_3g106210 23.548 310 179 8 254 536 310 588 2.66e-16 83.2
MS.gene39023.t1 MTR_3g106210 23.548 310 179 8 254 536 310 588 2.75e-16 83.2
MS.gene39023.t1 MTR_5g020000 22.591 301 184 9 253 530 205 479 2.92e-16 82.8
MS.gene39023.t1 MTR_4g118720 25.839 298 172 9 253 530 1026 1294 4.86e-16 82.4
MS.gene39023.t1 MTR_5g005840 24.658 292 180 8 253 530 384 649 2.75e-14 76.6
MS.gene39023.t1 MTR_5g004720 25.581 301 183 8 250 530 208 487 5.39e-14 75.5
MS.gene39023.t1 MTR_8g030550 24.752 303 183 6 253 530 1008 1290 7.15e-14 75.5
MS.gene39023.t1 MTR_8g030550 24.752 303 183 6 253 530 1008 1290 7.26e-14 75.5
MS.gene39023.t1 MTR_7g078090 25.407 307 177 10 253 530 1015 1298 1.10e-13 75.1
MS.gene39023.t1 MTR_8g030550 24.752 303 183 6 253 530 1008 1290 1.14e-13 74.7
MS.gene39023.t1 MTR_4g096930 21.884 361 212 12 192 537 723 1028 4.02e-13 73.2
MS.gene39023.t1 MTR_7g039320 26.939 245 101 11 199 421 35 223 2.00e-12 70.5
MS.gene39023.t1 MTR_7g039320 26.939 245 101 11 199 421 35 223 2.12e-12 70.5
MS.gene39023.t1 MTR_1g080420 26.394 269 156 8 252 492 612 866 2.61e-12 70.5
MS.gene39023.t1 MTR_1g080420 26.394 269 156 8 252 492 743 997 3.06e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39023.t1 AT5G05130 56.143 586 206 8 1 551 42 611 0.0 639
MS.gene39023.t1 AT5G22750 34.884 387 194 7 202 530 347 733 1.57e-58 211
MS.gene39023.t1 AT5G43530 32.632 380 216 9 190 530 604 982 4.79e-56 204
MS.gene39023.t1 AT1G11100 32.447 376 190 9 193 531 532 880 1.90e-52 193
MS.gene39023.t1 AT1G11100 32.447 376 190 9 193 531 389 737 1.91e-52 193
MS.gene39023.t1 AT1G61140 28.538 431 187 8 195 530 390 794 2.34e-49 184
MS.gene39023.t1 AT1G61140 28.538 431 187 8 195 530 548 952 2.63e-49 184
MS.gene39023.t1 AT1G61140 28.538 431 187 8 195 530 555 959 2.79e-49 184
MS.gene39023.t1 AT3G16600 29.640 361 175 7 195 530 45 351 2.55e-45 169
MS.gene39023.t1 AT1G02670 30.696 316 165 7 252 528 144 444 6.87e-37 144
MS.gene39023.t1 AT1G02670 30.503 318 167 7 250 528 115 417 1.94e-36 144
MS.gene39023.t1 AT1G02670 30.063 316 167 6 252 528 144 444 2.49e-36 144
MS.gene39023.t1 AT1G02670 30.503 318 167 7 250 528 115 417 2.81e-36 144
MS.gene39023.t1 AT1G02670 30.503 318 167 7 250 528 142 444 3.43e-36 144
MS.gene39023.t1 AT1G50410 39.766 171 98 1 365 530 466 636 4.90e-33 135
MS.gene39023.t1 AT1G50410 27.652 264 101 9 195 406 218 443 4.26e-16 82.4
MS.gene39023.t1 AT1G50410 39.766 171 98 1 365 530 466 636 5.84e-33 134
MS.gene39023.t1 AT1G50410 27.652 264 101 9 195 406 218 443 6.37e-16 82.0
MS.gene39023.t1 AT1G50410 39.766 171 98 1 365 530 466 636 5.84e-33 134
MS.gene39023.t1 AT1G50410 27.652 264 101 9 195 406 218 443 6.37e-16 82.0
MS.gene39023.t1 AT1G50410 39.766 171 98 1 365 530 466 636 5.84e-33 134
MS.gene39023.t1 AT1G50410 27.652 264 101 9 195 406 218 443 6.37e-16 82.0
MS.gene39023.t1 AT1G11100 37.572 173 103 1 364 531 752 924 1.52e-30 127
MS.gene39023.t1 AT1G11100 37.572 173 103 1 364 531 751 923 1.57e-30 127
MS.gene39023.t1 AT3G20010 40.116 172 98 1 364 530 245 416 1.68e-30 127
MS.gene39023.t1 AT1G11100 37.572 173 103 1 364 531 609 781 1.93e-30 127
MS.gene39023.t1 AT3G20010 40.116 172 98 1 364 530 270 441 2.22e-30 126
MS.gene39023.t1 AT3G20010 40.116 172 98 1 364 530 536 707 2.29e-30 127
MS.gene39023.t1 AT3G20010 40.116 172 98 1 364 530 536 707 2.29e-30 127
MS.gene39023.t1 AT3G20010 40.116 172 98 1 364 530 536 707 2.29e-30 127
MS.gene39023.t1 AT3G20010 40.116 172 98 1 364 530 536 707 3.00e-30 126
MS.gene39023.t1 AT3G20010 40.116 172 98 1 364 530 536 707 3.00e-30 126
MS.gene39023.t1 AT3G20010 40.116 172 98 1 364 530 536 707 3.00e-30 126
MS.gene39023.t1 AT1G02670 37.705 183 92 5 252 424 144 314 8.55e-30 124
MS.gene39023.t1 AT1G02670 37.705 183 92 5 252 424 155 325 1.05e-29 124
MS.gene39023.t1 AT3G54280 28.520 277 166 7 253 510 1503 1766 9.86e-26 113
MS.gene39023.t1 AT3G54280 28.520 277 166 7 253 510 1472 1735 1.11e-25 112
MS.gene39023.t1 AT2G40770 29.682 283 150 9 296 531 499 779 1.33e-25 112
MS.gene39023.t1 AT2G40770 29.682 283 150 9 296 531 499 779 1.33e-25 112
MS.gene39023.t1 AT2G40770 29.682 283 150 9 296 531 499 779 1.33e-25 112
MS.gene39023.t1 AT5G18620 28.873 284 167 9 253 530 215 469 1.25e-22 103
MS.gene39023.t1 AT5G18620 28.873 284 167 9 253 530 215 469 1.30e-22 103
MS.gene39023.t1 AT3G06400 28.169 284 169 8 253 530 210 464 6.14e-22 100
MS.gene39023.t1 AT3G06400 28.169 284 169 8 253 530 210 464 6.37e-22 100
MS.gene39023.t1 AT3G06400 28.169 284 169 8 253 530 210 464 6.42e-22 100
MS.gene39023.t1 AT3G12810 28.082 292 167 10 253 530 553 815 1.68e-20 96.7
MS.gene39023.t1 AT3G12810 28.082 292 167 10 253 530 557 819 1.68e-20 96.7
MS.gene39023.t1 AT2G02090 27.547 265 155 8 250 500 232 473 1.04e-19 93.6
MS.gene39023.t1 AT1G03750 25.952 289 159 9 195 469 132 379 1.77e-19 93.2
MS.gene39023.t1 AT4G31900 26.756 299 169 10 254 541 247 506 2.36e-18 89.7
MS.gene39023.t1 AT4G31900 26.756 299 169 10 254 541 247 506 2.45e-18 89.7
MS.gene39023.t1 AT4G31900 26.756 299 169 10 254 541 206 465 2.48e-18 89.7
MS.gene39023.t1 AT3G57300 23.920 301 181 9 253 530 607 882 3.23e-18 89.4
MS.gene39023.t1 AT3G57300 23.920 301 181 9 253 530 607 882 3.26e-18 89.4
MS.gene39023.t1 AT3G57300 23.920 301 181 9 253 530 607 882 3.26e-18 89.4
MS.gene39023.t1 AT1G05120 30.769 182 82 5 187 366 167 306 3.56e-18 89.0
MS.gene39023.t1 AT1G05120 28.061 196 104 3 370 528 397 592 1.61e-16 83.6
MS.gene39023.t1 AT1G05120 30.769 182 82 5 187 366 124 263 3.57e-18 89.0
MS.gene39023.t1 AT1G05120 28.061 196 104 3 370 528 354 549 1.44e-16 84.0
MS.gene39023.t1 AT3G54460 26.786 224 153 6 296 510 456 677 3.96e-17 85.9
MS.gene39023.t1 AT3G54460 26.786 224 153 6 296 510 753 974 4.22e-17 85.9
MS.gene39023.t1 AT2G44980 25.914 301 176 12 257 537 77 350 6.27e-17 85.1
MS.gene39023.t1 AT2G28290 25.843 356 186 12 195 530 746 1043 6.81e-17 85.5
MS.gene39023.t1 AT2G28290 25.843 356 186 12 195 530 746 1043 7.43e-17 85.1
MS.gene39023.t1 AT2G28290 25.843 356 186 12 195 530 746 1043 7.43e-17 85.1
MS.gene39023.t1 AT2G28290 25.843 356 186 12 195 530 747 1044 7.50e-17 85.1
MS.gene39023.t1 AT2G28290 26.124 356 185 12 195 530 746 1043 7.70e-17 85.1
MS.gene39023.t1 AT2G28290 26.124 356 185 12 195 530 747 1044 7.90e-17 85.1
MS.gene39023.t1 AT2G13370 24.232 293 175 8 254 530 647 908 8.24e-17 85.1
MS.gene39023.t1 AT2G13370 24.232 293 175 8 254 530 647 908 8.24e-17 85.1
MS.gene39023.t1 AT2G13370 24.232 293 175 8 254 530 647 908 8.24e-17 85.1
MS.gene39023.t1 AT2G44980 25.559 313 177 13 254 537 73 358 1.44e-16 84.0
MS.gene39023.t1 AT2G44980 25.806 310 174 13 257 537 77 359 3.92e-16 82.4
MS.gene39023.t1 AT3G06010 24.090 357 192 11 161 495 361 660 1.69e-14 77.4
MS.gene39023.t1 AT3G57300 22.024 336 177 9 253 530 607 915 2.79e-14 76.6
MS.gene39023.t1 AT2G25170 23.985 271 150 7 254 495 312 555 3.21e-14 76.6
MS.gene39023.t1 AT2G25170 23.985 271 150 7 254 495 321 564 3.53e-14 76.6
MS.gene39023.t1 AT2G25170 23.985 271 150 7 254 495 295 538 3.87e-14 76.3
MS.gene39023.t1 AT2G25170 23.985 271 150 7 254 495 295 538 3.87e-14 76.3
MS.gene39023.t1 AT5G19310 23.453 307 191 11 253 543 143 421 2.70e-13 73.2
MS.gene39023.t1 AT5G19310 23.453 307 191 11 253 543 407 685 3.52e-13 73.2
MS.gene39023.t1 AT5G66750 25.203 246 136 8 253 475 223 443 5.22e-13 72.4
MS.gene39023.t1 AT5G44800 22.346 358 208 12 195 537 681 983 3.17e-12 70.5
MS.gene39023.t1 AT2G46020 23.954 263 160 8 253 496 1002 1243 1.41e-11 68.2
MS.gene39023.t1 AT2G46020 23.954 263 160 8 253 496 1002 1243 1.41e-11 68.2
MS.gene39023.t1 AT2G46020 23.954 263 160 8 253 496 1002 1243 1.41e-11 68.2
MS.gene39023.t1 AT2G46020 24.242 264 159 9 253 496 1002 1244 7.60e-11 65.9
MS.gene39023.t1 AT2G46020 24.242 264 159 9 253 496 1002 1244 7.60e-11 65.9
MS.gene39023.t1 AT2G46020 24.242 264 159 9 253 496 1002 1244 7.60e-11 65.9

Find 0 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATGAAAATGAAAAGT+GGG - 50868:2326-2345 MS.gene39023:CDS 15.0%
!!! GTTTTTACTATTATTATTAC+CGG + 50868:1996-2015 MS.gene39023:intergenic 15.0%
!! AAACCAAAAAACAGAATAAT+TGG + 50868:2995-3014 MS.gene39023:intergenic 20.0%
!! CAATAACTCTTAATAGAAAA+CGG + 50868:2784-2803 MS.gene39023:intergenic 20.0%
!! GATAAAATGAAAATGAAAAG+TGG - 50868:2325-2344 MS.gene39023:CDS 20.0%
!! TTGAAGGTTTATATGTATTA+TGG - 50868:2475-2494 MS.gene39023:CDS 20.0%
!! TTTATATGTATTATGGTGAT+AGG - 50868:2482-2501 MS.gene39023:CDS 20.0%
!!! AATTATTCTGTTTTTTGGTT+TGG - 50868:2994-3013 MS.gene39023:CDS 20.0%
! AATTCAATTCATTGAGCAAA+AGG + 50868:2946-2965 MS.gene39023:intergenic 25.0%
! ATACGAAATGAAATGAACAT+TGG + 50868:1891-1910 MS.gene39023:intergenic 25.0%
! ATTTAATAATGCTAGAAGGA+GGG + 50868:2087-2106 MS.gene39023:intergenic 25.0%
! TAGAATCATACTTAGTATAG+TGG + 50868:3268-3287 MS.gene39023:intergenic 25.0%
! TCTGATTTAATAATGCTAGA+AGG + 50868:2091-2110 MS.gene39023:intergenic 25.0%
!! CGTTTTCTATTAAGAGTTAT+TGG - 50868:2782-2801 MS.gene39023:CDS 25.0%
!! GGTTTTACTTACTCTTTTTT+GGG - 50868:3049-3068 MS.gene39023:CDS 25.0%
!!! ATTTTTTACTTGCATGTGTA+GGG - 50868:2895-2914 MS.gene39023:CDS 25.0%
!!! TGACCAATTATTCTGTTTTT+TGG - 50868:2989-3008 MS.gene39023:CDS 25.0%
!!! TGGTTTTACTTACTCTTTTT+TGG - 50868:3048-3067 MS.gene39023:CDS 25.0%
!!! TTATGACTTGTTTTCTCTTA+TGG - 50868:2741-2760 MS.gene39023:CDS 25.0%
ATATGTATTATGGTGATAGG+AGG - 50868:2485-2504 MS.gene39023:CDS 30.0%
CGAGTTTGAAAATTTGATCT+AGG + 50868:2018-2037 MS.gene39023:intergenic 30.0%
GATTTAATAATGCTAGAAGG+AGG + 50868:2088-2107 MS.gene39023:intergenic 30.0%
TAAGCGCTTGTTTGTTTATA+TGG - 50868:3028-3047 MS.gene39023:CDS 30.0%
TACGATCAAGAATGTTAATG+CGG - 50868:2642-2661 MS.gene39023:CDS 30.0%
TCATAAGAACCATTCTGAAT+AGG + 50868:2727-2746 MS.gene39023:intergenic 30.0%
TTGACTACTTATGCTACATT+GGG - 50868:2547-2566 MS.gene39023:CDS 30.0%
!!! CATTTTTTACTTGCATGTGT+AGG - 50868:2894-2913 MS.gene39023:CDS 30.0%
!!! TTACTTACTCTTTTTTGGGT+AGG - 50868:3053-3072 MS.gene39023:CDS 30.0%
!!! TTTTTTACTTGCATGTGTAG+GGG - 50868:2896-2915 MS.gene39023:CDS 30.0%
ACGATCAAGAATGTTAATGC+GGG - 50868:2643-2662 MS.gene39023:CDS 35.0%
ACTGTATGATGAGGTTAAAG+AGG - 50868:3185-3204 MS.gene39023:CDS 35.0%
AGAACGTAAACTGTATGATG+AGG - 50868:3176-3195 MS.gene39023:CDS 35.0%
ATACTCCTGTGAAGAAATTG+GGG - 50868:2590-2609 MS.gene39023:CDS 35.0%
ATGAAAAGTGGGAAGAAAAG+AGG - 50868:2337-2356 MS.gene39023:CDS 35.0%
CGAAGATATGAATCTGACAA+GGG + 50868:1823-1842 MS.gene39023:intergenic 35.0%
CGAATTATCAAACTAATGCG+CGG - 50868:2221-2240 MS.gene39023:CDS 35.0%
CTTAATCAAGGAAAACAGAC+CGG - 50868:2826-2845 MS.gene39023:CDS 35.0%
GAATGAGAAAGAGTAAACGA+AGG + 50868:1920-1939 MS.gene39023:intergenic 35.0%
GATACTCCTGTGAAGAAATT+GGG - 50868:2589-2608 MS.gene39023:CDS 35.0%
GTTGACTACTTATGCTACAT+TGG - 50868:2546-2565 MS.gene39023:CDS 35.0%
GTTTAACGGTTCAGAAACTA+GGG + 50868:2065-2084 MS.gene39023:intergenic 35.0%
TAAGAGTTATTGGCAAAGCT+TGG - 50868:2792-2811 MS.gene39023:CDS 35.0%
TATGAATCTGACAAGGGATA+CGG + 50868:1817-1836 MS.gene39023:intergenic 35.0%
TGACAAGTCTCAACAATCTT+AGG + 50868:3138-3157 MS.gene39023:intergenic 35.0%
TTAACGTTGCTATCGTTGAT+TGG - 50868:2298-2317 MS.gene39023:CDS 35.0%
TTAATCAAGGAAAACAGACC+GGG - 50868:2827-2846 MS.gene39023:CDS 35.0%
TTCGACATGGATAACTCAAT+TGG - 50868:2429-2448 MS.gene39023:CDS 35.0%
! GTCTGTTTTCCTTGATTAAG+AGG + 50868:2826-2845 MS.gene39023:intergenic 35.0%
!! TGATTTTTCGATGGTTCCTT+TGG - 50868:3308-3327 MS.gene39023:CDS 35.0%
!! TTTTGGGTAGGTTTTGATGT+CGG - 50868:3065-3084 MS.gene39023:CDS 35.0%
AAAGTGGGAAGAAAAGAGGT+AGG - 50868:2341-2360 MS.gene39023:CDS 40.0%
AACACTCAAACACTCCAAGT+CGG - 50868:1683-1702 MS.gene39023:CDS 40.0%
AAGAACCAAAGACACTGCAT+TGG - 50868:3101-3120 MS.gene39023:CDS 40.0%
AAGTGGGAAGAAAAGAGGTA+GGG - 50868:2342-2361 MS.gene39023:CDS 40.0%
AGACACGACTTGAAATCCAA+AGG + 50868:3327-3346 MS.gene39023:intergenic 40.0%
ATCCATGTCGAAATCACAGA+AGG + 50868:2421-2440 MS.gene39023:intergenic 40.0%
ATGCTAGAAGGAGGGTTTAA+CGG + 50868:2079-2098 MS.gene39023:intergenic 40.0%
CAAGTCTCAACAATCTTAGG+TGG + 50868:3135-3154 MS.gene39023:intergenic 40.0%
GACATGGATAACTCAATTGG+AGG - 50868:2432-2451 MS.gene39023:CDS 40.0%
GCGAAGATATGAATCTGACA+AGG + 50868:1824-1843 MS.gene39023:intergenic 40.0%
GGATACTCCTGTGAAGAAAT+TGG - 50868:2588-2607 MS.gene39023:CDS 40.0%
GGTTTAACGGTTCAGAAACT+AGG + 50868:2066-2085 MS.gene39023:intergenic 40.0%
GTTATTGTTAGAGCGAGTGT+TGG + 50868:1789-1808 MS.gene39023:intergenic 40.0%
TATAAACCTTCAACGTGCCA+CGG + 50868:2468-2487 MS.gene39023:intergenic 40.0%
TTGGAGTCGTATGGGTTTAA+AGG + 50868:1647-1666 MS.gene39023:intergenic 40.0%
TTTGAATGCGAAGAGGAGAT+GGG - 50868:2687-2706 MS.gene39023:CDS 40.0%
! GCTGTTCATGACGCTTTTAA+CGG - 50868:1863-1882 MS.gene39023:intron 40.0%
! TGATTGCTTTGAATGCGAAG+AGG - 50868:2680-2699 MS.gene39023:CDS 40.0%
!! ACCAAAAAGAAGCACTAGGA+TGG - 50868:2122-2141 MS.gene39023:CDS 40.0%
!! TGATGATTTACCGCCGTTTT+GGG - 50868:2165-2184 MS.gene39023:CDS 40.0%
!! TTGAGTGTTGAGGACTTTGA+TGG + 50868:1672-1691 MS.gene39023:intergenic 40.0%
!!! AAACTAGGGTTTTGGAAGCT+AGG + 50868:2051-2070 MS.gene39023:intergenic 40.0%
!!! GATCTGTGCTGATTTTTCGA+TGG - 50868:3299-3318 MS.gene39023:CDS 40.0%
AACCAAAGACACTGCATTGG+TGG - 50868:3104-3123 MS.gene39023:CDS 45.0%
AGTGGGAAGAAAAGAGGTAG+GGG - 50868:2343-2362 MS.gene39023:CDS 45.0%
CATGTCGAAATCACAGAAGG+AGG + 50868:2418-2437 MS.gene39023:intergenic 45.0%
CGTATGGGTTTAAAGGTTCG+CGG + 50868:1640-1659 MS.gene39023:intergenic 45.0%
CTCCTTCTGTGATTTCGACA+TGG - 50868:2416-2435 MS.gene39023:CDS 45.0%
CTTTGAATGCGAAGAGGAGA+TGG - 50868:2686-2705 MS.gene39023:CDS 45.0%
GATGTTGGCCATTACGAAAC+CGG + 50868:1561-1580 MS.gene39023:intergenic 45.0%
GTCAGCGCGTGTTTCTTTAA+CGG + 50868:1948-1967 MS.gene39023:intergenic 45.0%
GTCGGCATTAAACACTACTC+CGG - 50868:1581-1600 MS.gene39023:CDS 45.0%
GTGTTTAATGCCGACGATGT+TGG + 50868:1576-1595 MS.gene39023:intergenic 45.0%
GTTCAGCGACCTCTTAATCA+AGG - 50868:2814-2833 MS.gene39023:CDS 45.0%
TTATCAAACTAATGCGCGGC+CGG - 50868:2225-2244 MS.gene39023:CDS 45.0%
TTCGTAATGGCCAACATCGT+CGG - 50868:1563-1582 MS.gene39023:CDS 45.0%
TTGGAGGAACATACTAACCG+TGG - 50868:2448-2467 MS.gene39023:CDS 45.0%
! ACCAAAGACACTGCATTGGT+GGG - 50868:3105-3124 MS.gene39023:CDS 45.0%
! CGGTTCAGAAACTAGGGTTT+TGG + 50868:2059-2078 MS.gene39023:intergenic 45.0%
! CTGATGATTTACCGCCGTTT+TGG - 50868:2164-2183 MS.gene39023:CDS 45.0%
! CTTGGAGTGTTTGAGTGTTG+AGG + 50868:1682-1701 MS.gene39023:intergenic 45.0%
! GCCATCCTAGTGCTTCTTTT+TGG + 50868:2126-2145 MS.gene39023:intergenic 45.0%
! GTAGGTTTCGGATTGGGATT+GGG + 50868:1534-1553 MS.gene39023:intergenic 45.0%
! TGTTACAGAATCAGCGCTGA+CGG + 50868:1972-1991 MS.gene39023:intergenic 45.0%
!! AGCGCTGATTCTGTAACAAC+CGG - 50868:1974-1993 MS.gene39023:intron 45.0%
!! CAGCACCAAAAAGAAGCACT+AGG - 50868:2118-2137 MS.gene39023:CDS 45.0%
!!! GAGGAGGATTGTTTTGGATG+AGG - 50868:2615-2634 MS.gene39023:CDS 45.0%
AGCGCGTGTTTCTTTAACGG+CGG + 50868:1945-1964 MS.gene39023:intergenic 50.0%
AGGGTGGAGAGTGAGACAAA+TGG - 50868:2376-2395 MS.gene39023:CDS 50.0%
AGGTAGGGGTAGTGTAGAGA+GGG - 50868:2357-2376 MS.gene39023:CDS 50.0%
CCCTCTTTCTCCTCCCAAAA+CGG + 50868:2181-2200 MS.gene39023:intergenic 50.0%
CTACATTGGGAGCTGAGTTG+CGG - 50868:2560-2579 MS.gene39023:CDS 50.0%
CTCAAGATGCTGAGGAGTTG+AGG - 50868:2509-2528 MS.gene39023:CDS 50.0%
CTCCACCCCAATTTCTTCAC+AGG + 50868:2598-2617 MS.gene39023:intergenic 50.0%
CTCCTGTGAAGAAATTGGGG+TGG - 50868:2593-2612 MS.gene39023:CDS 50.0%
CTGTGAAGAAATTGGGGTGG+AGG - 50868:2596-2615 MS.gene39023:CDS 50.0%
GGATTAAGCCGAGGATTTCG+CGG + 50868:1619-1638 MS.gene39023:intergenic 50.0%
TACTAACCGTGGCACGTTGA+AGG - 50868:2459-2478 MS.gene39023:CDS 50.0%
TAGGAGGACTCAAGATGCTG+AGG - 50868:2501-2520 MS.gene39023:CDS 50.0%
TCTCTCGGGAGGGATATTTG+CGG - 50868:2252-2271 MS.gene39023:CDS 50.0%
TCTTTCTCCTCCCAAAACGG+CGG + 50868:2178-2197 MS.gene39023:intergenic 50.0%
TGAAGAAATTGGGGTGGAGG+AGG - 50868:2599-2618 MS.gene39023:CDS 50.0%
TGTTAATGCGGGACAGAGTC+AGG - 50868:2654-2673 MS.gene39023:CDS 50.0%
TTTGAACGATGGCTTCGACG+TGG + 50868:1766-1785 MS.gene39023:intergenic 50.0%
! CCAAAGACACTGCATTGGTG+GGG - 50868:3106-3125 MS.gene39023:CDS 50.0%
! GGTAGGTTTCGGATTGGGAT+TGG + 50868:1535-1554 MS.gene39023:intergenic 50.0%
! TACCTGCAATCGACTCATCC+CGG + 50868:2848-2867 MS.gene39023:intergenic 50.0%
! TCGGATTGGGATTGGGAGAA+GGG + 50868:1527-1546 MS.gene39023:intergenic 50.0%
! TGATGGCGTTGGAGTCGTAT+GGG + 50868:1655-1674 MS.gene39023:intergenic 50.0%
! TTCGGATTGGGATTGGGAGA+AGG + 50868:1528-1547 MS.gene39023:intergenic 50.0%
!! AAGAGGAGATGGGCTGTTAC+GGG - 50868:2697-2716 MS.gene39023:CDS 50.0%
!! ATGATATGAGCGTCGAGGAG+AGG + 50868:1743-1762 MS.gene39023:intergenic 50.0%
!! GAAGAGGAGATGGGCTGTTA+CGG - 50868:2696-2715 MS.gene39023:CDS 50.0%
!! GCGAGTGTTGGTTTGAACGA+TGG + 50868:1777-1796 MS.gene39023:intergenic 50.0%
!! GTTGAGGACTTTGATGGCGT+TGG + 50868:1666-1685 MS.gene39023:intergenic 50.0%
!! TGATTTACCGCCGTTTTGGG+AGG - 50868:2168-2187 MS.gene39023:CDS 50.0%
!! TTGATGGCGTTGGAGTCGTA+TGG + 50868:1656-1675 MS.gene39023:intergenic 50.0%
!!! CCGTTTTGGGAGGAGAAAGA+GGG - 50868:2178-2197 MS.gene39023:CDS 50.0%
!!! CGTTTTGGGAGGAGAAAGAG+GGG - 50868:2179-2198 MS.gene39023:CDS 50.0%
ACGGGGACGCCTATTCAGAA+TGG - 50868:2715-2734 MS.gene39023:CDS 55.0%
AGGGATATTTGCGGACGGGA+TGG - 50868:2261-2280 MS.gene39023:CDS 55.0%
CAATCCGAAACCTACCTCGC+CGG - 50868:1539-1558 MS.gene39023:CDS 55.0%
CATTACGAAACCGGCGAGGT+AGG + 50868:1552-1571 MS.gene39023:intergenic 55.0%
CCCCACCAATGCAGTGTCTT+TGG + 50868:3109-3128 MS.gene39023:intergenic 55.0%
CGCGTTCGATGTAACCGACT+TGG + 50868:1700-1719 MS.gene39023:intergenic 55.0%
GAAACCGGCGAGGTAGGTTT+CGG + 50868:1546-1565 MS.gene39023:intergenic 55.0%
GAGGTAGGGGTAGTGTAGAG+AGG - 50868:2356-2375 MS.gene39023:CDS 55.0%
GCAAATATCCCTCCCGAGAG+AGG + 50868:2253-2272 MS.gene39023:intergenic 55.0%
GCGTGTTTCTTTAACGGCGG+CGG + 50868:1942-1961 MS.gene39023:intergenic 55.0%
GGCGAGGTAGGTTTCGGATT+GGG + 50868:1540-1559 MS.gene39023:intergenic 55.0%
GGGATATTTGCGGACGGGAT+GGG - 50868:2262-2281 MS.gene39023:CDS 55.0%
TAGGGGTAGTGTAGAGAGGG+TGG - 50868:2360-2379 MS.gene39023:CDS 55.0%
TCGGGAGGGATATTTGCGGA+CGG - 50868:2256-2275 MS.gene39023:CDS 55.0%
TTGCGGACGGGATGGGATTA+GGG - 50868:2269-2288 MS.gene39023:CDS 55.0%
TTTGCGGACGGGATGGGATT+AGG - 50868:2268-2287 MS.gene39023:CDS 55.0%
! AAGGTTCGCGGATTAAGCCG+AGG + 50868:1628-1647 MS.gene39023:intergenic 55.0%
! CGTGGATGATATGAGCGTCG+AGG + 50868:1748-1767 MS.gene39023:intergenic 55.0%
! GGGGTGGAGGAGGATTGTTT+TGG - 50868:2609-2628 MS.gene39023:CDS 55.0%
!! AGAGGAGATGGGCTGTTACG+GGG - 50868:2698-2717 MS.gene39023:CDS 55.0%
!! CTACCTCGCCGGTTTCGTAA+TGG - 50868:1550-1569 MS.gene39023:CDS 55.0%
!!! GCCGTTTTGGGAGGAGAAAG+AGG - 50868:2177-2196 MS.gene39023:CDS 55.0%
ATCACCGGCCGCGAAATCCT+CGG - 50868:1608-1627 MS.gene39023:CDS 60.0%
CACTACTCCGGCACCATCAC+CGG - 50868:1593-1612 MS.gene39023:CDS 60.0%
CGGCGAGGTAGGTTTCGGAT+TGG + 50868:1541-1560 MS.gene39023:intergenic 60.0%
CGGGAGGGATATTTGCGGAC+GGG - 50868:2257-2276 MS.gene39023:CDS 60.0%
GACCGGGATGAGTCGATTGC+AGG - 50868:2843-2862 MS.gene39023:CDS 60.0%
GGGAGCTGAGTTGCGGTGTT+CGG - 50868:2567-2586 MS.gene39023:CDS 60.0%
TAAGCCGAGGATTTCGCGGC+CGG + 50868:1615-1634 MS.gene39023:intergenic 60.0%
TGGCCATTACGAAACCGGCG+AGG + 50868:1556-1575 MS.gene39023:intergenic 60.0%
ATCCCTCCCGAGAGAGGCTC+CGG + 50868:2247-2266 MS.gene39023:intergenic 65.0%
GAGGATTTCGCGGCCGGTGA+TGG + 50868:1609-1628 MS.gene39023:intergenic 65.0%
GTCGAGGAGAGGAGCGAGAG+CGG + 50868:1732-1751 MS.gene39023:intergenic 65.0%
GAGGAGAGGAGCGAGAGCGG+CGG + 50868:1729-1748 MS.gene39023:intergenic 70.0%
! TTCGCGGCCGGTGATGGTGC+CGG + 50868:1603-1622 MS.gene39023:intergenic 70.0%
GGCCGGAGCCTCTCTCGGGA+GGG - 50868:2242-2261 MS.gene39023:CDS 75.0%
TGCGCGGCCGGAGCCTCTCT+CGG - 50868:2237-2256 MS.gene39023:CDS 75.0%
! CGGCCGGAGCCTCTCTCGGG+AGG - 50868:2241-2260 MS.gene39023:CDS 80.0%
! GCGCGGCCGGAGCCTCTCTC+GGG - 50868:2238-2257 MS.gene39023:CDS 80.0%


Chromosome Type Strat End Strand Name
50868 gene 1506 3369 1506 ID=MS.gene39023
50868 mRNA 1506 3369 1506 ID=MS.gene39023.t1;Parent=MS.gene39023
50868 exon 2011 3369 2011 ID=MS.gene39023.t1.exon1;Parent=MS.gene39023.t1
50868 CDS 2011 3369 2011 ID=cds.MS.gene39023.t1;Parent=MS.gene39023.t1
50868 exon 1506 1800 1506 ID=MS.gene39023.t1.exon2;Parent=MS.gene39023.t1
50868 CDS 1506 1800 1506 ID=cds.MS.gene39023.t1;Parent=MS.gene39023.t1
Gene Sequence

>MS.gene39023

ATGGAAGACTCACAAGAACCCTTCTCCCAATCCCAATCCGAAACCTACCTCGCCGGTTTCGTAATGGCCAACATCGTCGGCATTAAACACTACTCCGGCACCATCACCGGCCGCGAAATCCTCGGCTTAATCCGCGAACCTTTAAACCCATACGACTCCAACGCCATCAAAGTCCTCAACACTCAAACACTCCAAGTCGGTTACATCGAACGCGACGTCGCCGCCGCTCTCGCTCCTCTCCTCGACGCTCATATCATCCACGTCGAAGCCATCGTTCAAACCAACACTCGCTCTAACAATAACAAATTCCGTATCCCTTGTCAGATTCATATCTTCGCTCATCAATCTGCTTTTGACGCTGTTCATGACGCTTTTAACGGTTCCAATGTTCATTTCATTTCGTATAGTGATCCTTCGTTTACTCTTTCTCATTCCGCCGCCGTTAAAGAAACACGCGCTGACACCGTCAGCGCTGATTCTGTAACAACCGGTAATAATAATAGTAAAAACCTAGATCAAATTTTCAAACTCGTTCGAGAAAACCTAGCTTCCAAAACCCTAGTTTCTGAACCGTTAAACCCTCCTTCTAGCATTATTAAATCAGAGCTTCTGCAGCACCAAAAAGAAGCACTAGGATGGCTTTATCGTCGTGAAAGTGCTGATGATTTACCGCCGTTTTGGGAGGAGAAAGAGGGGAATTTTGTTAATGTGTTGACGAATTATCAAACTAATGCGCGGCCGGAGCCTCTCTCGGGAGGGATATTTGCGGACGGGATGGGATTAGGGAAGACGTTAACGTTGCTATCGTTGATTGGTTATGATAAAATGAAAATGAAAAGTGGGAAGAAAAGAGGTAGGGGTAGTGTAGAGAGGGTGGAGAGTGAGACAAATGGTACATTGATTGTTTGTCCTCCTTCTGTGATTTCGACATGGATAACTCAATTGGAGGAACATACTAACCGTGGCACGTTGAAGGTTTATATGTATTATGGTGATAGGAGGACTCAAGATGCTGAGGAGTTGAGGAAGTATGATATTGTGTTGACTACTTATGCTACATTGGGAGCTGAGTTGCGGTGTTCGGATACTCCTGTGAAGAAATTGGGGTGGAGGAGGATTGTTTTGGATGAGGCGCATACGATCAAGAATGTTAATGCGGGACAGAGTCAGGCTGTGATTGCTTTGAATGCGAAGAGGAGATGGGCTGTTACGGGGACGCCTATTCAGAATGGTTCTTATGACTTGTTTTCTCTTATGGCTTTTTTGCATTTTGAGCCGTTTTCTATTAAGAGTTATTGGCAAAGCTTGGTTCAGCGACCTCTTAATCAAGGAAAACAGACCGGGATGAGTCGATTGCAGGTACAATTCGATAACAATGTATTGATTGTCATTTTTTACTTGCATGTGTAGGGGATTACATAAATCAACTATTAGTTTCCTTTTGCTCAATGAATTGAATTTGAATTTCAGTGTTTGTGAGTTGTGACCAATTATTCTGTTTTTTGGTTTGGTATGTTTTGTGTAAGCGCTTGTTTGTTTATATGGTTTTACTTACTCTTTTTTGGGTAGGTTTTGATGTCGGCAATATCATTGCGAAGAACCAAAGACACTGCATTGGTGGGGCTTCCACCTAAGATTGTTGAGACTTGTCATGTTGAACTTTCATTTGAAGAACGTAAACTGTATGATGAGGTTAAAGAGGAAATAAAGTCACTTATGATGCATCATAACAGCAATGACAGACTAGTATCTAGTTATTCCACTATACTAAGTATGATTCTAAGACTTCGTCAGATCTGTGCTGATTTTTCGATGGTTCCTTTGGATTTCAAGTCGTGTCTATTTTCTTCAACTGATATTGAAG

Protein sequence

>MS.gene39023.t1

MEDSQEPFSQSQSETYLAGFVMANIVGIKHYSGTITGREILGLIREPLNPYDSNAIKVLNTQTLQVGYIERDVAAALAPLLDAHIIHVEAIVQTNTRSNNNKFRIPCQIHIFAHQSAFDAVHDAFNGSNVHFISYSDPSFTLSHSAAVKETRADTVSADSVTTGNNNSKNLDQIFKLVRENLASKTLVSEPLNPPSSIIKSELLQHQKEALGWLYRRESADDLPPFWEEKEGNFVNVLTNYQTNARPEPLSGGIFADGMGLGKTLTLLSLIGYDKMKMKSGKKRGRGSVERVESETNGTLIVCPPSVISTWITQLEEHTNRGTLKVYMYYGDRRTQDAEELRKYDIVLTTYATLGAELRCSDTPVKKLGWRRIVLDEAHTIKNVNAGQSQAVIALNAKRRWAVTGTPIQNGSYDLFSLMAFLHFEPFSIKSYWQSLVQRPLNQGKQTGMSRLQVLMSAISLRRTKDTALVGLPPKIVETCHVELSFEERKLYDEVKEEIKSLMMHHNSNDRLVSSYSTILSMILRLRQICADFSMVPLDFKSCLFSSTDIE