AlfalfaGEDB | MS.gene39031

M. sativa cultivar XinJiangDaYe / MS.gene39031

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39031.t1	XP_003624963.1	95.8	595	16	2	1	586	1	595	5.00E-298	1033.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39031.t1	O80673	75.3	587	133	3	1	586	1	576	1.6e-257	889.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39031.t1	Q2HT01	95.8	595	16	2	1	586	1	595	3.6e-298	1033.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene008759	MS.gene39031	PPI
MS.gene015421	MS.gene39031	PPI
MS.gene035805	MS.gene39031	PPI
MS.gene039123	MS.gene39031	PPI
MS.gene040595	MS.gene39031	PPI
MS.gene063379	MS.gene39031	PPI
MS.gene064542	MS.gene39031	PPI
MS.gene069559	MS.gene39031	PPI
MS.gene09774	MS.gene39031	PPI
MS.gene26538	MS.gene39031	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39031.t1	MTR_7g089480	97.647	595	5	3	1	586	1	595	0.0	1182
MS.gene39031.t1	MTR_8g079790	67.905	592	159	10	1	579	1	574	0.0	807
MS.gene39031.t1	MTR_4g086660	69.412	595	166	9	1	585	1	589	0.0	800
MS.gene39031.t1	MTR_5g017830	65.772	596	171	7	1	579	1	580	0.0	792
MS.gene39031.t1	MTR_7g118020	56.423	615	210	8	1	582	1	590	0.0	683
MS.gene39031.t1	MTR_3g092230	59.563	549	202	6	39	582	50	583	0.0	662
MS.gene39031.t1	MTR_5g022030	49.785	466	226	4	117	579	84	544	7.06e-148	438
MS.gene39031.t1	MTR_5g022030	51.408	426	201	3	117	539	84	506	1.29e-143	426
MS.gene39031.t1	MTR_4g107490	41.964	448	243	6	134	575	75	511	4.25e-114	351
MS.gene39031.t1	MTR_7g091890	41.943	453	244	9	130	575	56	496	1.05e-113	349

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene39031.t1	AT2G41140	79.387	587	109	5	1	586	1	576	957
MS.gene39031.t1	AT3G56760	79.082	588	110	4	1	586	1	577	950
MS.gene39031.t1	AT3G50530	73.905	548	134	3	43	582	51	597	848
MS.gene39031.t1	AT3G50530	69.948	579	134	4	43	582	51	628	832
MS.gene39031.t1	AT1G49580	63.621	602	197	7	1	582	1	600	755
MS.gene39031.t1	AT3G19100	62.729	601	195	6	1	581	1	592	751
MS.gene39031.t1	AT2G46700	59.599	599	219	7	1	584	1	591	672
MS.gene39031.t1	AT5G24430	55.574	601	235	9	1	582	1	588	628
MS.gene39031.t1	AT3G49370	55.740	601	233	9	1	582	1	587	612
MS.gene39031.t1	AT2G46700	65.217	414	140	2	171	584	1	410	560

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Find 122 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTGGAGGGAATGGACACT+TGG	0.463026	7.2:-19071210	MS.gene39031:CDS
AACTTTGATGATGATTTAGT+TGG	0.470518	7.2:+19075414	None:intergenic
AAGAAACTTGGTAATGGACT+TGG	0.465527	7.2:+19075378	None:intergenic
AAGATATTGCGAGCTCTAAC+TGG	0.288240	7.2:-19074424	MS.gene39031:CDS
AAGGGAGTGAGTGTGAAGTT+GGG	0.577397	7.2:-19075206	MS.gene39031:CDS
AATGAAGCTACTATACCTGA+AGG	0.625931	7.2:-19075225	MS.gene39031:CDS
ACAACTCTGGCATCCTCTTC+CGG	0.296864	7.2:+19073727	None:intergenic
ACACCGCGATCTCAAGCCAG+AGG	0.718921	7.2:-19073653	MS.gene39031:intron
ACACTGAAGGCCATTGACTT+TGG	0.419781	7.2:-19072758	MS.gene39031:CDS
ACACTTGGGAGCAACATGCA+AGG	0.664300	7.2:-19071195	MS.gene39031:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAGTACAAGAGAAATG+AGG	+	chr7.2:19071846-19071865	None:intergenic	30.0%
AAACAGTACAAGAGAAATGA+GGG	+	chr7.2:19071845-19071864	None:intergenic	30.0%
AAGTAACAATTCAGTTTCCA+AGG	+	chr7.2:19074055-19074074	None:intergenic	30.0%
AAGTAATAGTGTGTGTACTT+TGG	+	chr7.2:19074701-19074720	None:intergenic	30.0%
AAGTTTGGGTCTTCAATATT+TGG	-	chr7.2:19072310-19072329	MS.gene39031:intron	30.0%
AATTATAAGGGTAACTAGTG+AGG	+	chr7.2:19071061-19071080	None:intergenic	30.0%
AATTCTTAAATGCCACTGAA+AGG	-	chr7.2:19071077-19071096	MS.gene39031:intron	30.0%
ACACGTTGTAATCAAATGAA+AGG	+	chr7.2:19071980-19071999	None:intergenic	30.0%
AGGCACTAAAATTTAAAGGT+AGG	+	chr7.2:19074460-19074479	None:intergenic	30.0%
ATACTACAAGATTGAACAGA+TGG	+	chr7.2:19073462-19073481	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	19069831	19075556	19069831	ID=MS.gene39031
chr7.2	mRNA	19069831	19075556	19069831	ID=MS.gene39031.t1;Parent=MS.gene39031
chr7.2	exon	19075047	19075556	19075047	ID=MS.gene39031.t1.exon1;Parent=MS.gene39031.t1
chr7.2	CDS	19075047	19075556	19075047	ID=cds.MS.gene39031.t1;Parent=MS.gene39031.t1
chr7.2	exon	19074358	19074488	19074358	ID=MS.gene39031.t1.exon2;Parent=MS.gene39031.t1
chr7.2	CDS	19074358	19074488	19074358	ID=cds.MS.gene39031.t1;Parent=MS.gene39031.t1
chr7.2	exon	19073901	19073942	19073901	ID=MS.gene39031.t1.exon3;Parent=MS.gene39031.t1
chr7.2	CDS	19073901	19073942	19073901	ID=cds.MS.gene39031.t1;Parent=MS.gene39031.t1
chr7.2	exon	19073654	19073762	19073654	ID=MS.gene39031.t1.exon4;Parent=MS.gene39031.t1
chr7.2	CDS	19073654	19073762	19073654	ID=cds.MS.gene39031.t1;Parent=MS.gene39031.t1
chr7.2	exon	19072735	19072813	19072735	ID=MS.gene39031.t1.exon5;Parent=MS.gene39031.t1
chr7.2	CDS	19072735	19072813	19072735	ID=cds.MS.gene39031.t1;Parent=MS.gene39031.t1
chr7.2	exon	19072349	19072645	19072349	ID=MS.gene39031.t1.exon6;Parent=MS.gene39031.t1
chr7.2	CDS	19072349	19072645	19072349	ID=cds.MS.gene39031.t1;Parent=MS.gene39031.t1
chr7.2	exon	19072138	19072253	19072138	ID=MS.gene39031.t1.exon7;Parent=MS.gene39031.t1
chr7.2	CDS	19072138	19072253	19072138	ID=cds.MS.gene39031.t1;Parent=MS.gene39031.t1
chr7.2	exon	19071529	19071636	19071529	ID=MS.gene39031.t1.exon8;Parent=MS.gene39031.t1
chr7.2	CDS	19071529	19071636	19071529	ID=cds.MS.gene39031.t1;Parent=MS.gene39031.t1
chr7.2	exon	19071394	19071456	19071394	ID=MS.gene39031.t1.exon9;Parent=MS.gene39031.t1
chr7.2	CDS	19071394	19071456	19071394	ID=cds.MS.gene39031.t1;Parent=MS.gene39031.t1
chr7.2	exon	19071132	19071299	19071132	ID=MS.gene39031.t1.exon10;Parent=MS.gene39031.t1
chr7.2	CDS	19071132	19071299	19071132	ID=cds.MS.gene39031.t1;Parent=MS.gene39031.t1
chr7.2	exon	19069831	19069968	19069831	ID=MS.gene39031.t1.exon11;Parent=MS.gene39031.t1
chr7.2	CDS	19069831	19069968	19069831	ID=cds.MS.gene39031.t1;Parent=MS.gene39031.t1

Gene Sequence

>MS.gene39031

ATGGGACTCTGTCATGGAAAACCCATTGAAACTTCACATAGAGAAAGAGAAAGAGAAAATCCAACAAATGAAGAAATTCTTCAACTTCCACCACCACCATCAAGCTCACATCCTCATGCACCAACTAAATCATCATCAAAGTTTCCATTTTTCAGTCCAAGTCCATTACCAAGTTTCTTCAAAAACTCACCTGCAAATTCAACCCCTCTTCGAACCCCTCTTCGGATCTTCAAGCGACCCTTTCCTCCGCCGTCACCGGCGAAGCACATTCGAGCACTGCTAGCTAGAAGACATGGCTCTGTGAAGCCTAATGAAGCTACTATACCTGAAGGGAGTGAGTGTGAAGTTGGGTTGGATAAGAGTTTTGGATTTTCTAAGCATTTTGTGACGAATTTTGAGCTTGGACAAGAAGTGGGTCGTGGCCATTTTGGTTATACTTGCTCTGCTAAGGGTAAAAAAGGAAGCTTTAAGGGTCTTGATGTTGCTGTTAAAGTCATTCCTAAATCTAAGGTCTAATTTCATCTTTTTTTGTTTGCTTCATTCTTTCAATTTTTGTTTTGTTTTTAACACATTTTTTTTAATATATTTTGTTTCAAATTGGGTTTTGTGATCTAGGTGTTCTTGTGAAATCATGTTGTGGAAGTGTTAGAAGAAGCAATTTTTAGATTTTTGGTTCATAATCTATATCACTTATATGGGTTGAGTTTTTTTGGAAGAAAACAGTTTTGTAAATTTTTGTTGGAATGGTTTTTTCTGTGGTTAATTTTAATTTATGTCTCTTTTAATAGAGTTGTTAATTATTAGGGTTAATATGTTTATGAGAATTTTATGCCTTGTATTCTATGTGGAGAATCCAGCTTTTTAAGCTTTACTTGGAAAAATCCTGAAACTCTGGATAGATATGTGGTTGTGGTATTTTTTGATAGATTACATGAGGTACCTTCATTGGATTTGTTTTCATTTCAGTGTCGTGAAAATTTATTGTAATGATCAATGTTCATCTATGGCTGTTAATTATTAAATAAGCTATGTGCTCTTTGTTCTTATATATTTGGGCAATGTTGGCAGATGACAACAGCAATTGCTATCGAGGATGTAAGAAGAGAAGTGAAGATATTGCGAGCTCTAACTGGGCATAAGAATTTAGTACAATTCTACGAAGCCTATGAAGACGAAGAAAATGTTTATGTAGTTATGGAGTAAGTTCTAGTTACCCTTATATCGCGACCTCACTAGTTACCCTTATAATTCTTAAATGCCACTGAAAGGTCAGTGTGTGTTTGAAAACTTATAAAGTCACGGTGCCACACTGAGATTGACCTAAGCTTCGATTTGTTCCTTCAGTAAAGTCATGTTCAAAGTACATAGCATCGCGGTAAATATTGACGCGATGTACAACCAAACATGCACTTAGTAATATAATCCCATGTTAAATGAGCATTATTTTTTAAGCTAACCAATGACTTTCCTTATATCTTGAGTATACGTCCAAAGAAATAGATATTGTAATATTTATTTTTTGGAGATATTGTATTAATTAAGCAGGAAAATGAAAGTTGTTAATCAAGTCATTGAATTTGGAGCTAACGTTTCATTATATCTTATGCTATACAGATTATGCAAAGGAGGCGAATTGCTAGATAAGATTCTTTCCAGGTAAAAAATTACTCCAACTTTTATTTTTCTGTGCCGTAAAGTTGGAAGAAACTAAAAGTAGATTTTCTGCCTTCATTATTTTCCCATTGCCGTCATTGGAGACATTCTGATCAGCTGATCTTTGATTGTGATCTATAGGGGTGGAAAGTACCCGGAAGAGGATGCCAGAGTTGTTTTGATACAGATATTAAGTGTGGTAGCTTACTGTCATCTACAGGGTGTTGTACACCGCGATCTCAAGCCAGAGGTAATCTTTTCATATCAATAAAACTAAAATTTCATGGTACACGTGGCATGCTCATTTTCTTTCCATTTGATTACAACGTGTTGCTGTCTCATCACTCGCACAAAACCACCCTCATTTCTCTTGTACTGTTTTCACACCGCTTCTTTGAAGACTCGTGTTGCAAATGGGTCAGAGCTACTAGTTAGTTCAGCTATTCATATTAAGAAAACTAAATTTTCATGGCACACGTGGCAAATTCACATTCCTTTCATTTGATTACAACGTGTCCCTCGGTCTCCCATCACTCGCACAAAACCACACTCTGTTGTCTTTTATTGTTTCTGCGCCGTTTCTTTTAAAGACACGTCTTGCAATATGGGTCAATGCTACTAGTAGTTCATTAAGCTAATCAATGCTTAGCTGGGAAAAGTGTTCAGATATTTTTTGCCTTTGAGTTTAATTAGAAATAATGACATCGTTATTTTCCTATATTTTTTACATACCTAATAAATTTAGATGATTTGATCAGCATGAGCTCCTAACTTGTTCGGAATCTTGTTATTACGCTTTGGTGATGCTCCTAATGGCAATTTCATTAAGTTTGGGTCTTCAATATTTGGTATTATCACTTCATGTTTAGTATTTTCAACGAGTTACTGGGTGTATGCATGCAATTTGAGTTTAATGTTATGCTGTCATTCTTGATAAATTAATGAACTATTCTGAATGACAAAAGTTATTTCACAAAAAAATGATATTGCAGCTCAGTTTTTTTTTTTTTTAAACTAGAATTATTTACTCTCTTTCATCTGGTCATGTTATATTGTTTTGCTCTTAATCAAGGTTTGTTTTCTGCTACAGAATTTTCTTTTTAGTTCCGAGGATGAAAATTCTACACTGAAGGCCATTGACTTTGGACTCTCTGATTATGTAAAGCCAGGTCTGGCCTATTGCCTACACTATATTAATTTTCTCCAATTTTTAATATAAAGTTAAACAACAAGTGGTAACAATTAGCAGTTTTTGCAGATGAGAGATTGAATGATATTGTTGGAAGTGCTTATTACGTTGCACCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATCGGTGTAATTGCTTATATTCTGTTATGTGGAAGCCGTCCTTTTTGGGCTAGGACAGAATCTGGCATATTTCGGGCTGTCCTTAAGGCAGATCCAAGTTTCGATGAAGCTCCCTGGCCTTCTTTATCGGCTGATGCAAAAGATTTTGTAAAAAGGCTGTTGAATAAAGATTACCGTAAAAGACTAACCGCATCTCAGGCTCTCAGTATGTGTTCCGCTTCACATTGATTGTTGTGATATTAAAATTCTCGTGTTGTAATACTATGAACTTTCTCGCTTATAGCTTGGTTTTATGGGTAGGTCATCCGTGGCTGGTGAATCACTTAGAGGATATAAAGATACCATTTGATATGATAATCCACAAGCTCATCAAAACTTACATATGCTCGTCTTCTCTACGCAAATCAGCATTAGGGGTATGTACTGTCATTGTTTATGCAACTATGTTTTGAAGTGATTTGTTTATTTAGCTCTTGTTGTTGATTATGCTTATTACAATTTTTCCTGGTTCTGTCGCTGAAGAGGAGGAAATGAGAAGAAAGAAATTTGATTGCTAAATTTGGAAGAAACTTTAGTAGGTTTTAACACGCCCTTCCAAACGGAAAAATTAAGATTCTTAGAGATCCCATCTGTTCAATCTTGTAGTATGCACATGATAATGCACATTTATTAATTACATTTCATTTTTTGACACGGAAAATGTTAGTATTGTTAATTTTAATCCTAAGGGTGGGGATCAAACCCTTAACCTCCTTATCACTCACTCCTTAACTCCCCCATCCCAACCAAGCCATCTTTATATCTCCTTATTAATTACATTATTAGTTGACAAGTTGAGTGCAAGTATGAGTTTTTGTACTTGCCTGTCATTTTGTGTGATAATATATAATGTATTAAAGTTTTGTCATTTTTGACAGGCTCTTGCAAAGACATTGACATTAGTGCAGCTAGCATATCTCAGAGAACAATTTACTCTATTAGGGCCAAACAAAAGTGGGCTAATCTCTATGCAGAACTTCAAGACGGTCAGTACATGTCGAAAGTTTATGTATTTTTTTGCCAAATAACTTTCAAGCCGTTAACATTTTAATTTGCAGGCTGTTTTAAGGAGCGCTACTGATGCCTCGAAGGATTCACGTGTCTTAGATTATGTGAACATGGTAAGTCTATGAGGGATTTTAACTTTTCATTTCAAGCTTCTACTAAAGTTGTTTGCTTCCTTGGAAACTGAATTGTTACTTTCACATGTTGCAGGTTAGTTCAATACAGTATCGAAAATTAGATTTTGAGGAATTTTGCGCTGCTGCTATAAGTGTCCATCAACTGGAGGGAATGGACACTTGGGAGCAACATGCAAGGCGTGCTTACGAGCTGTTTGAAAAGGATGGAAATAGACCAATTATGATCGAAGAGCTTGCCTCGGTATGCTTCTTGCGTAATACCATTTTGACTAATATACTTTAGATTGTGATTTTACTTTTTTGATTTTTTTTTCCCCCGGAGAATTAGAACTAATTCCCTGCAAATTGAGTTAATTGTTCCCAAAGTCATATAAATCACTAAGAAATTTTCCTTCTAAAATAAGTTTTTTTGTTTTTTTTTTGTAAAGTGCACAAGGGCGTACCTACCTTTAAATTTTAGTGCCTCGGTATGCTTCTTGCGTAATACCATTTTGACTAATATACTTTAGATTGTGATTTTACTTTTTTTATTTTTTTTTCCCCCCGGAGAATTAGAACTAATTCCCTGCAAATTGAGTTAATTGTTCCCAAAGTCATATAAATCACTAAGAAATTTTCCTTCTAAAATAAGTTTTTTTGTTTTTTTTTTTGTAAAGTGCACAACGGCGTTCTTTTAAACTAAACCAAAGTACACACACTATTACTTGAGCATTTTACATTAGATCTTTTGATGAGATTTAAATGCATGACTCATCAGTATCTACATGCGAGTCGTATCTTATAATTGGATACTAAATCGATATGAATCTCTAATGTATATCGATTTACATGAATCTCATTTAGAGTTCCTATTCATTATGGATGAAGTTCGATTTACTATGATGAATCTCAACTTATTCTAATGATTCACTATCTAAATTTACTGTAGTCAGCCACTTTTTCTATGTAAACTTTGTATACCCAACCACTCTTCTGCCATTTGATATGGCTTGAATTTTGAACTATTGAGGTTCACATGATTTATCAGACTATAATTTTGTTCTGTCACTAGTTTTTTAACTTAAAAATGACATTTTTATTGACAATGTATCTTCCGATTCATAATAAAGTTTGATTCATGATTCGTAACAAACGTCTTCTGATTCATGATTTGAATCTTGATTTGATATCTTCTGATTCATGATTTGAATCTTTATTTGATAACCATGTTTTACGGACATACTCATTTAGTGGAGTATGTATATGAGATTATGCAAGTGGTTATCAAATCCTAGTTTAGAATAACATGTTGAATTCTCCTTTGCTTTCCTCTTATGCCTTGTAACCTTTAAATTAGATTCGCAATCACCAATATGCTTCCACTGCATTATAAATTTTTACTAATCTTTTGTATTTTGATTTCAGGAACTTGGGCTTAGCCCCTCAGTACCTATTCACGTGGTACTCCAAGATTGGATAAGACACTCAGATGGAAAGCTTAGTTTCTTAGGGTTTGTCAGACTCCTGCATGGAGTTTCTTCTCGCACATTTCACAAGGCCTGA

Protein sequence

>MS.gene39031.t1

MGLCHGKPIETSHRERERENPTNEEILQLPPPPSSSHPHAPTKSSSKFPFFSPSPLPSFFKNSPANSTPLRTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEATIPEGSECEVGLDKSFGFSKHFVTNFELGQEVGRGHFGYTCSAKGKKGSFKGLDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDEENVYVVMELCKGGELLDKILSRGGKYPEEDARVVLIQILSVVAYCHLQGVVHRDLKPENFLFSSEDENSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAKDFVKRLLNKDYRKRLTASQALSHPWLVNHLEDIKIPFDMIIHKLIKTYICSSSLRKSALGALAKTLTLVQLAYLREQFTLLGPNKSGLISMQNFKTAVLRSATDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMDTWEQHARRAYELFEKDGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFHKA