Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39077.t1 | XP_003625105.2 | 99.6 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 1.20E-262 | 915.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39077.t1 | O22216 | 87.2 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 1.2e-234 | 813.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39077.t1 | G7KSM3 | 99.6 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 8.5e-263 | 915.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052665 | MS.gene39077 | 0.806582 | 7.67E-50 | -1.69E-46 |
| MS.gene052732 | MS.gene39077 | 0.806427 | 8.27E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene39077 | 0.807848 | 4.14E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39077.t1 | MTR_7g090970 | 99.562 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 0.0 | 943 |
| MS.gene39077.t1 | MTR_7g090970 | 99.520 | 417 | 2 | 0 | 1 | 417 | 1 | 417 | 0.0 | 860 |
| MS.gene39077.t1 | MTR_4g043650 | 85.556 | 450 | 65 | 0 | 8 | 457 | 8 | 457 | 0.0 | 807 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39077.t1 | AT2G41540 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| MS.gene39077.t1 | AT2G41540 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| MS.gene39077.t1 | AT2G41540 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| MS.gene39077.t1 | AT2G41540 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| MS.gene39077.t1 | AT3G07690 | 80.909 | 440 | 84 | 0 | 18 | 457 | 16 | 455 | 0.0 | 759 |
| MS.gene39077.t1 | AT3G07690 | 79.111 | 450 | 84 | 1 | 18 | 457 | 16 | 465 | 0.0 | 753 |
| MS.gene39077.t1 | AT5G40610 | 26.521 | 411 | 228 | 18 | 22 | 419 | 39 | 388 | 8.90e-16 | 79.3 |
Find 84 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATGGTGGGAAGTATTT+TGG | 0.125449 | 7.4:-17826575 | None:intergenic |
| TAGATTTCTGAAGCAATATT+TGG | 0.204065 | 7.4:+17825264 | None:intergenic |
| CCAATACACACAATTCTTAA+TGG | 0.226759 | 7.4:+17826466 | None:intergenic |
| TTCTACAGGCCTTCACTTCT+TGG | 0.227692 | 7.4:-17823594 | MS.gene39077:CDS |
| CTTCAGGATGCAATACATTT+AGG | 0.253998 | 7.4:+17823991 | None:intergenic |
| GACAACCACATTTCATTGTA+TGG | 0.268525 | 7.4:-17825170 | MS.gene39077:CDS |
| GATGAGTTTAGGAGACTAAT+TGG | 0.269554 | 7.4:-17826505 | MS.gene39077:CDS |
| TTCGAAAATCTCACGAGTTT+CGG | 0.269563 | 7.4:+17826081 | None:intergenic |
| ACTTATGTGACATTGTTAAA+AGG | 0.274708 | 7.4:-17824302 | MS.gene39077:CDS |
| GATGCTGATATTGTTGTTAA+TGG | 0.309247 | 7.4:-17826115 | MS.gene39077:CDS |
| TCTCAGGCTCTTCAGTTAAC+AGG | 0.316025 | 7.4:+17824351 | None:intergenic |
| AGGAGAAGCTTGATGAGTTT+AGG | 0.317427 | 7.4:-17826516 | MS.gene39077:CDS |
| CTAATTTGCAAGAAGCTGTT+TGG | 0.326140 | 7.4:-17826138 | MS.gene39077:CDS |
| ACAAAGTACAAATCAGAATA+TGG | 0.327356 | 7.4:-17826381 | MS.gene39077:CDS |
| GCAATACATTTAGGCTTGAT+TGG | 0.338071 | 7.4:+17824000 | None:intergenic |
| TCATCTCAGAATCATAATAA+TGG | 0.350904 | 7.4:-17826544 | MS.gene39077:CDS |
| TAATTTGCAAGAAGCTGTTT+GGG | 0.364920 | 7.4:-17826137 | MS.gene39077:CDS |
| TTAGACAGAGAGATTATAAC+AGG | 0.380435 | 7.4:+17826022 | None:intergenic |
| CTAATGCTGTCACCCATGTC+AGG | 0.381833 | 7.4:+17824233 | None:intergenic |
| GAAGAGCCTGAGAAACTTGC+TGG | 0.392061 | 7.4:-17824341 | MS.gene39077:CDS |
| GCTGATGAAATTCTTAAAGA+TGG | 0.403549 | 7.4:-17826211 | MS.gene39077:CDS |
| ATCTCACGAGTTTCGGTTGA+AGG | 0.407631 | 7.4:+17826088 | None:intergenic |
| ATGGAGAACATACTTTATCT+TGG | 0.408674 | 7.4:-17825291 | MS.gene39077:CDS |
| TGCTATTCTAAAAGCTTTGA+GGG | 0.411503 | 7.4:-17823670 | MS.gene39077:CDS |
| TGTCTAAGAAACTTTGCTAA+AGG | 0.417206 | 7.4:+17825189 | None:intergenic |
| GTGTATTGGAGCAGGTGCTT+GGG | 0.429380 | 7.4:-17826452 | MS.gene39077:CDS |
| GAATCATAATAATGGATTAG+AGG | 0.429843 | 7.4:-17826536 | MS.gene39077:CDS |
| ATGCTATTCTAAAAGCTTTG+AGG | 0.430646 | 7.4:-17823671 | MS.gene39077:CDS |
| TAGCGGCAAAGGAATGATTC+AGG | 0.431970 | 7.4:-17824213 | MS.gene39077:intron |
| TTGTAGAGTGTCTTCAGGAT+AGG | 0.442108 | 7.4:+17823936 | None:intergenic |
| AGGATAGGGCAAAGTTCAAC+AGG | 0.442918 | 7.4:+17823951 | None:intergenic |
| GGAGTTACAATATGAGGAAC+AGG | 0.446394 | 7.4:+17825977 | None:intergenic |
| TGTAGAGTGTCTTCAGGATA+GGG | 0.449158 | 7.4:+17823937 | None:intergenic |
| ACAACTTTCAAAGGACAAAC+AGG | 0.452124 | 7.4:+17826163 | None:intergenic |
| CCATTAAGAATTGTGTGTAT+TGG | 0.455692 | 7.4:-17826466 | MS.gene39077:CDS |
| TGTGTATTGGAGCAGGTGCT+TGG | 0.457732 | 7.4:-17826453 | MS.gene39077:CDS |
| TCGAAGAGATTAGCAAGTAT+TGG | 0.460412 | 7.4:-17826063 | MS.gene39077:CDS |
| TATGCCAATGCTCGAATTTG+TGG | 0.461408 | 7.4:-17825231 | MS.gene39077:CDS |
| GAATTTGTGGAGCTGAGAAA+TGG | 0.462642 | 7.4:-17825218 | MS.gene39077:CDS |
| TTGAAGCAAGACTTGGTGAT+AGG | 0.462713 | 7.4:-17826243 | MS.gene39077:CDS |
| AGACTAATTGGTAAAACTAA+TGG | 0.462975 | 7.4:-17826493 | MS.gene39077:CDS |
| TTTGCTAGTAGCACTCTCAT+TGG | 0.465676 | 7.4:+17824421 | None:intergenic |
| TTCGACAGCTGGAGTGCCTA+TGG | 0.466991 | 7.4:-17825310 | MS.gene39077:intron |
| AATGGTCCAGCAAGTTTCTC+AGG | 0.467384 | 7.4:+17824335 | None:intergenic |
| CACAAAGTCATGCTTTCTAC+AGG | 0.470610 | 7.4:-17823608 | MS.gene39077:CDS |
| TCTACAAAATATTGATATCC+AGG | 0.488839 | 7.4:-17823920 | MS.gene39077:intron |
| ATCAGAATATGGAGAAGAGC+AGG | 0.496538 | 7.4:-17826370 | MS.gene39077:CDS |
| TAGTAGCACTCTCATTGGTA+AGG | 0.499488 | 7.4:+17824426 | None:intergenic |
| TAAAGGTATTGAAGCTGCAT+TGG | 0.499510 | 7.4:-17826002 | MS.gene39077:CDS |
| GTTATAATCTCTCTGTCTAA+AGG | 0.502564 | 7.4:-17826019 | MS.gene39077:CDS |
| TTTGTGGGAGTTACAATATG+AGG | 0.502737 | 7.4:+17825971 | None:intergenic |
| ACAACCACATTTCATTGTAT+GGG | 0.504294 | 7.4:-17825169 | MS.gene39077:CDS |
| AGCTCCACAAATTCGAGCAT+TGG | 0.510159 | 7.4:+17825227 | None:intergenic |
| AATGTCTATGCAATTGGAGC+TGG | 0.522412 | 7.4:-17825102 | MS.gene39077:intron |
| CTAGGGAGTGTCTGCAGTGG+AGG | 0.524080 | 7.4:-17824042 | MS.gene39077:intron |
| CCTTGTCACACATGAGGTCA+TGG | 0.530388 | 7.4:-17825136 | MS.gene39077:CDS |
| GAGAACATACTTTATCTTGG+TGG | 0.535772 | 7.4:-17825288 | MS.gene39077:CDS |
| GTACGGTCAAATGTTAGCTA+AGG | 0.537842 | 7.4:-17824267 | MS.gene39077:CDS |
| AAAGGTCGTAACGCGTGGTA+CGG | 0.542056 | 7.4:-17824284 | MS.gene39077:CDS |
| GACATGGGTGACAGCATTAG+CGG | 0.546090 | 7.4:-17824230 | MS.gene39077:CDS |
| AAATTAGTAACAACTTTCAA+AGG | 0.547608 | 7.4:+17826154 | None:intergenic |
| GGTGACAGCATTAGCGGCAA+AGG | 0.550945 | 7.4:-17824224 | MS.gene39077:CDS |
| CACTGTTGTCCAAGAAGTGA+AGG | 0.553189 | 7.4:+17823585 | None:intergenic |
| AGAATTGTGTGTATTGGAGC+AGG | 0.556506 | 7.4:-17826460 | MS.gene39077:CDS |
| AAATATGTTGAAGCAAGACT+TGG | 0.566622 | 7.4:-17826250 | MS.gene39077:CDS |
| GGGTGAACTAAGCCCTGACA+TGG | 0.571055 | 7.4:-17824246 | MS.gene39077:CDS |
| AGAGATTAGCAAGTATTGGA+AGG | 0.583545 | 7.4:-17826059 | MS.gene39077:CDS |
| AGATAAAGTATGTTCTCCAT+AGG | 0.586722 | 7.4:+17825294 | None:intergenic |
| TAATGCTGTCACCCATGTCA+GGG | 0.593470 | 7.4:+17824234 | None:intergenic |
| TGTATTGGAGCAGGTGCTTG+GGG | 0.597611 | 7.4:-17826451 | MS.gene39077:CDS |
| GCAATTGCAATGCGTTCTCG+TGG | 0.608213 | 7.4:+17823630 | None:intergenic |
| AGTAGCACTCTCATTGGTAA+GGG | 0.611334 | 7.4:+17824427 | None:intergenic |
| TACGGTCAAATGTTAGCTAA+GGG | 0.616531 | 7.4:-17824266 | MS.gene39077:CDS |
| ACATAAGTATCAGCTAGTAA+TGG | 0.625233 | 7.4:+17824317 | None:intergenic |
| TTTGTGGAGCTGAGAAATGG+AGG | 0.630464 | 7.4:-17825215 | MS.gene39077:CDS |
| GTCACACATGAGGTCATGGG+TGG | 0.637923 | 7.4:-17825132 | MS.gene39077:CDS |
| CCATGACCTCATGTGTGACA+AGG | 0.642037 | 7.4:+17825136 | None:intergenic |
| TGTTAAAAGGTCGTAACGCG+TGG | 0.645736 | 7.4:-17824289 | MS.gene39077:CDS |
| CTTGTCACACATGAGGTCAT+GGG | 0.650326 | 7.4:-17825135 | MS.gene39077:CDS |
| TTACTAGGGAGTGTCTGCAG+TGG | 0.667334 | 7.4:-17824045 | MS.gene39077:intron |
| TGCTTCAGAAATCTACAACA+AGG | 0.686795 | 7.4:-17825256 | MS.gene39077:CDS |
| TAGTGACCTTGTCACACATG+AGG | 0.687205 | 7.4:-17825142 | MS.gene39077:CDS |
| GGTGAACTAAGCCCTGACAT+GGG | 0.690260 | 7.4:-17824245 | MS.gene39077:CDS |
| TTGTCCCATACAATGAAATG+TGG | 0.713044 | 7.4:+17825165 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTTGTTTTTTGAAA+CGG | + | chr7.4:17825995-17826014 | None:intergenic | 10.0% |
| !! | ATAACAATAATAATACAATG+TGG | - | chr7.4:17826269-17826288 | MS.gene39077:CDS | 15.0% |
| !! | TAGATTTGAATAATTGAAAA+TGG | - | chr7.4:17824291-17824310 | MS.gene39077:CDS | 15.0% |
| !! | TTACCAAATGTATTATTATT+TGG | + | chr7.4:17826383-17826402 | None:intergenic | 15.0% |
| !!! | AAATATGTTACCAAAAATTT+TGG | - | chr7.4:17824518-17824537 | MS.gene39077:intron | 15.0% |
| !!! | TAAAATTTTGCATTGAAATA+AGG | + | chr7.4:17824786-17824805 | None:intergenic | 15.0% |
| !!! | TATCTAAATATTTTTCTATG+AGG | + | chr7.4:17825481-17825500 | None:intergenic | 15.0% |
| !!! | TTTTTAAATTGAATTCGTTA+CGG | + | chr7.4:17824561-17824580 | None:intergenic | 15.0% |
| !! | AAATTAGTAACAACTTTCAA+AGG | + | chr7.4:17824004-17824023 | None:intergenic | 20.0% |
| !! | ACTCCAAATAATAATACATT+TGG | - | chr7.4:17826377-17826396 | MS.gene39077:CDS | 20.0% |
| !! | AGAGTAATTGCTAAAATATA+AGG | + | chr7.4:17824721-17824740 | None:intergenic | 20.0% |
| !! | ATTTGAATAATTGAAAATGG+TGG | - | chr7.4:17824294-17824313 | MS.gene39077:CDS | 20.0% |
| !! | CGATGATTAATGAATATAAT+AGG | + | chr7.4:17824383-17824402 | None:intergenic | 20.0% |
| !! | TAATTCATTAACCACTAATT+TGG | + | chr7.4:17824335-17824354 | None:intergenic | 20.0% |
| !! | TTCTTTGTAATGATATAATC+AGG | - | chr7.4:17825694-17825713 | MS.gene39077:intron | 20.0% |
| !!! | AAAAAGAACTCCAAAATTTT+TGG | + | chr7.4:17824531-17824550 | None:intergenic | 20.0% |
| ! | AAATGGCATTATAACATTTG+AGG | + | chr7.4:17825626-17825645 | None:intergenic | 25.0% |
| ! | AACCTAACTTAAATGCATAT+AGG | + | chr7.4:17826298-17826317 | None:intergenic | 25.0% |
| ! | ACAAAGTACAAATCAGAATA+TGG | - | chr7.4:17823774-17823793 | MS.gene39077:intron | 25.0% |
| ! | ACATGTCAATTATCTTTACT+AGG | - | chr7.4:17826095-17826114 | MS.gene39077:CDS | 25.0% |
| ! | ACTTATGTGACATTGTTAAA+AGG | - | chr7.4:17825853-17825872 | MS.gene39077:intron | 25.0% |
| ! | AGAAAGTAAATGTTAAAGCA+TGG | + | chr7.4:17825649-17825668 | None:intergenic | 25.0% |
| ! | AGACTAATTGGTAAAACTAA+TGG | - | chr7.4:17823662-17823681 | MS.gene39077:CDS | 25.0% |
| ! | CATGTCAATTATCTTTACTA+GGG | - | chr7.4:17826096-17826115 | MS.gene39077:CDS | 25.0% |
| ! | CTAAGTTCAAATTCATTTCT+TGG | + | chr7.4:17824694-17824713 | None:intergenic | 25.0% |
| ! | GTATCTTCAAAATGTCAAAT+AGG | - | chr7.4:17826026-17826045 | MS.gene39077:CDS | 25.0% |
| ! | TAAATGTTAAAGCATGGAAA+TGG | + | chr7.4:17825643-17825662 | None:intergenic | 25.0% |
| ! | TCAAAAGATAGCAAGTTTAA+GGG | + | chr7.4:17826348-17826367 | None:intergenic | 25.0% |
| ! | TCATCTCAGAATCATAATAA+TGG | - | chr7.4:17823611-17823630 | MS.gene39077:CDS | 25.0% |
| ! | TCTACAAAATATTGATATCC+AGG | - | chr7.4:17826235-17826254 | MS.gene39077:CDS | 25.0% |
| ! | TGCAACTGTAAATTGAATTA+AGG | - | chr7.4:17825524-17825543 | MS.gene39077:intron | 25.0% |
| ! | TGTAATGATATAATCAGGAA+TGG | - | chr7.4:17825699-17825718 | MS.gene39077:intron | 25.0% |
| ! | TTGAAAAATGTCTATGCAAT+TGG | - | chr7.4:17825047-17825066 | MS.gene39077:intron | 25.0% |
| !! | AACCTATATGCATTTAAGTT+AGG | - | chr7.4:17826293-17826312 | MS.gene39077:CDS | 25.0% |
| !! | ATTAACTTGAAACTTGAGAA+AGG | - | chr7.4:17825589-17825608 | MS.gene39077:intron | 25.0% |
| !!! | GAATCATAATAATGGATTAG+AGG | - | chr7.4:17823619-17823638 | MS.gene39077:CDS | 25.0% |
| !!! | GTATCTTTTTACTTTAGAAC+TGG | + | chr7.4:17825219-17825238 | None:intergenic | 25.0% |
| !!! | TAGATTTCTGAAGCAATATT+TGG | + | chr7.4:17824894-17824913 | None:intergenic | 25.0% |
| AAATATGTTGAAGCAAGACT+TGG | - | chr7.4:17823905-17823924 | MS.gene39077:intron | 30.0% | |
| ACAACCACATTTCATTGTAT+GGG | - | chr7.4:17824986-17825005 | MS.gene39077:intron | 30.0% | |
| ACATAAGTATCAGCTAGTAA+TGG | + | chr7.4:17825841-17825860 | None:intergenic | 30.0% | |
| AGATAAAGTATGTTCTCCAT+AGG | + | chr7.4:17824864-17824883 | None:intergenic | 30.0% | |
| AGTATGAAAACGAACACAAT+AGG | + | chr7.4:17824587-17824606 | None:intergenic | 30.0% | |
| AGTGGTTAATGAATTAACGT+CGG | - | chr7.4:17824339-17824358 | MS.gene39077:CDS | 30.0% | |
| ATATCATTACAAAGAAGAGC+AGG | + | chr7.4:17825690-17825709 | None:intergenic | 30.0% | |
| ATGGAGAACATACTTTATCT+TGG | - | chr7.4:17824864-17824883 | MS.gene39077:intron | 30.0% | |
| CCAATACACACAATTCTTAA+TGG | + | chr7.4:17823692-17823711 | None:intergenic | 30.0% | |
| CCATTAAGAATTGTGTGTAT+TGG | - | chr7.4:17823689-17823708 | MS.gene39077:intron | 30.0% | |
| CCTAAGTTTGAATAACAGAA+AGG | + | chr7.4:17825327-17825346 | None:intergenic | 30.0% | |
| CCTTTCTGTTATTCAAACTT+AGG | - | chr7.4:17825324-17825343 | MS.gene39077:intron | 30.0% | |
| CTCAAAAGATAGCAAGTTTA+AGG | + | chr7.4:17826349-17826368 | None:intergenic | 30.0% | |
| GCTGATGAAATTCTTAAAGA+TGG | - | chr7.4:17823944-17823963 | MS.gene39077:CDS | 30.0% | |
| GTTATAATCTCTCTGTCTAA+AGG | - | chr7.4:17824136-17824155 | MS.gene39077:intron | 30.0% | |
| TGTCTAAGAAACTTTGCTAA+AGG | + | chr7.4:17824969-17824988 | None:intergenic | 30.0% | |
| TTAGACAGAGAGATTATAAC+AGG | + | chr7.4:17824136-17824155 | None:intergenic | 30.0% | |
| TTGTTATGAGAATGATTACC+TGG | + | chr7.4:17826256-17826275 | None:intergenic | 30.0% | |
| ! | ATGCTATTCTAAAAGCTTTG+AGG | - | chr7.4:17826484-17826503 | MS.gene39077:CDS | 30.0% |
| ! | GATGCTGATATTGTTGTTAA+TGG | - | chr7.4:17824040-17824059 | MS.gene39077:CDS | 30.0% |
| ! | GGTGTATGTTTGATTTCTTA+GGG | - | chr7.4:17826449-17826468 | MS.gene39077:CDS | 30.0% |
| ! | TAATTTGCAAGAAGCTGTTT+GGG | - | chr7.4:17824018-17824037 | MS.gene39077:CDS | 30.0% |
| ! | TGCTATTCTAAAAGCTTTGA+GGG | - | chr7.4:17826485-17826504 | MS.gene39077:CDS | 30.0% |
| ! | TGGTGTATGTTTGATTTCTT+AGG | - | chr7.4:17826448-17826467 | MS.gene39077:CDS | 30.0% |
| !! | ATATTTTGTAGAGTGTCTTC+AGG | + | chr7.4:17826227-17826246 | None:intergenic | 30.0% |
| !! | GCTTGATGAATCATTTTTGT+GGG | + | chr7.4:17824202-17824221 | None:intergenic | 30.0% |
| !! | TGCTTGATGAATCATTTTTG+TGG | + | chr7.4:17824203-17824222 | None:intergenic | 30.0% |
| !!! | ACTGCTCTAAAATTTTCTCA+GGG | + | chr7.4:17825193-17825212 | None:intergenic | 30.0% |
| !!! | CAAGAGAAGATGTTTTAAGA+AGG | - | chr7.4:17823858-17823877 | MS.gene39077:intron | 30.0% |
| !!! | TACTGCTCTAAAATTTTCTC+AGG | + | chr7.4:17825194-17825213 | None:intergenic | 30.0% |
| AAATAAGTTTCCCATGCTTC+TGG | - | chr7.4:17826428-17826447 | MS.gene39077:CDS | 35.0% | |
| AATGCAAAGAGTGAAGAATG+AGG | + | chr7.4:17824820-17824839 | None:intergenic | 35.0% | |
| ACAACTTTCAAAGGACAAAC+AGG | + | chr7.4:17823995-17824014 | None:intergenic | 35.0% | |
| ATGCAAAGAGTGAAGAATGA+GGG | + | chr7.4:17824819-17824838 | None:intergenic | 35.0% | |
| CTTCAGGATGCAATACATTT+AGG | + | chr7.4:17826167-17826186 | None:intergenic | 35.0% | |
| GACAACCACATTTCATTGTA+TGG | - | chr7.4:17824985-17825004 | MS.gene39077:intron | 35.0% | |
| GAGAACATACTTTATCTTGG+TGG | - | chr7.4:17824867-17824886 | MS.gene39077:intron | 35.0% | |
| GATGAGTTTAGGAGACTAAT+TGG | - | chr7.4:17823650-17823669 | MS.gene39077:CDS | 35.0% | |
| GCAAAGGCAAACAACAATAT+AGG | + | chr7.4:17824257-17824276 | None:intergenic | 35.0% | |
| GCAATACATTTAGGCTTGAT+TGG | + | chr7.4:17826158-17826177 | None:intergenic | 35.0% | |
| TACGGTCAAATGTTAGCTAA+GGG | - | chr7.4:17825889-17825908 | MS.gene39077:intron | 35.0% | |
| TACTTGTTCAATCCTTGCAA+AGG | + | chr7.4:17824273-17824292 | None:intergenic | 35.0% | |
| TCGAAGAGATTAGCAAGTAT+TGG | - | chr7.4:17824092-17824111 | MS.gene39077:intron | 35.0% | |
| TCTTGGAATCAAACACATTC+TGG | + | chr7.4:17824677-17824696 | None:intergenic | 35.0% | |
| TGCTTCAGAAATCTACAACA+AGG | - | chr7.4:17824899-17824918 | MS.gene39077:intron | 35.0% | |
| TTCGAAAATCTCACGAGTTT+CGG | + | chr7.4:17824077-17824096 | None:intergenic | 35.0% | |
| TTGTCCCATACAATGAAATG+TGG | + | chr7.4:17824993-17825012 | None:intergenic | 35.0% | |
| TTTGTGGGAGTTACAATATG+AGG | + | chr7.4:17824187-17824206 | None:intergenic | 35.0% | |
| ! | CTAATTTGCAAGAAGCTGTT+TGG | - | chr7.4:17824017-17824036 | MS.gene39077:CDS | 35.0% |
| ! | GCACTTTTACAAGACAGTTA+TGG | - | chr7.4:17823740-17823759 | MS.gene39077:intron | 35.0% |
| !! | AGAGATTAGCAAGTATTGGA+AGG | - | chr7.4:17824096-17824115 | MS.gene39077:intron | 35.0% |
| !! | TAAAGGTATTGAAGCTGCAT+TGG | - | chr7.4:17824153-17824172 | MS.gene39077:intron | 35.0% |
| !! | TATTGTTGTTTGCCTTTGCA+AGG | - | chr7.4:17824258-17824277 | MS.gene39077:CDS | 35.0% |
| !!! | CTGCTCTAAAATTTTCTCAG+GGG | + | chr7.4:17825192-17825211 | None:intergenic | 35.0% |
| !!! | GCAACATGCTTTTTTTCTTC+AGG | + | chr7.4:17826183-17826202 | None:intergenic | 35.0% |
| AATGTCTATGCAATTGGAGC+TGG | - | chr7.4:17825053-17825072 | MS.gene39077:intron | 40.0% | |
| AGAATTGTGTGTATTGGAGC+AGG | - | chr7.4:17823695-17823714 | MS.gene39077:intron | 40.0% | |
| AGGAGAAGCTTGATGAGTTT+AGG | - | chr7.4:17823639-17823658 | MS.gene39077:CDS | 40.0% | |
| AGTAGCACTCTCATTGGTAA+GGG | + | chr7.4:17825731-17825750 | None:intergenic | 40.0% | |
| AGTGAAGAATGAGGGATGAA+AGG | + | chr7.4:17824811-17824830 | None:intergenic | 40.0% | |
| AGTTTAGCCTAGTAGTCTCA+AGG | + | chr7.4:17825440-17825459 | None:intergenic | 40.0% | |
| ATCAGAATATGGAGAAGAGC+AGG | - | chr7.4:17823785-17823804 | MS.gene39077:intron | 40.0% | |
| CACAAAGTCATGCTTTCTAC+AGG | - | chr7.4:17826547-17826566 | MS.gene39077:CDS | 40.0% | |
| CACATGCTATAGAGACAAGA+AGG | - | chr7.4:17825562-17825581 | MS.gene39077:intron | 40.0% | |
| CTTGTCTCTATAGCATGTGA+AGG | + | chr7.4:17825561-17825580 | None:intergenic | 40.0% | |
| GAATTTGTGGAGCTGAGAAA+TGG | - | chr7.4:17824937-17824956 | MS.gene39077:intron | 40.0% | |
| GGAGACAGTTTAACGATAAG+TGG | + | chr7.4:17825397-17825416 | None:intergenic | 40.0% | |
| GGAGTTACAATATGAGGAAC+AGG | + | chr7.4:17824181-17824200 | None:intergenic | 40.0% | |
| GGTTAATGAATTAACGTCGG+TGG | - | chr7.4:17824342-17824361 | MS.gene39077:CDS | 40.0% | |
| GTACGGTCAAATGTTAGCTA+AGG | - | chr7.4:17825888-17825907 | MS.gene39077:intron | 40.0% | |
| GTTTAGCCTAGTAGTCTCAA+GGG | + | chr7.4:17825439-17825458 | None:intergenic | 40.0% | |
| TAGTAGCACTCTCATTGGTA+AGG | + | chr7.4:17825732-17825751 | None:intergenic | 40.0% | |
| TATGCCAATGCTCGAATTTG+TGG | - | chr7.4:17824924-17824943 | MS.gene39077:intron | 40.0% | |
| TCAAACATACACCAGAAGCA+TGG | + | chr7.4:17826442-17826461 | None:intergenic | 40.0% | |
| TCAGATATCAGATGCGCTAT+TGG | + | chr7.4:17824488-17824507 | None:intergenic | 40.0% | |
| TTTGCTAGTAGCACTCTCAT+TGG | + | chr7.4:17825737-17825756 | None:intergenic | 40.0% | |
| ! | CAAACATACACCAGAAGCAT+GGG | + | chr7.4:17826441-17826460 | None:intergenic | 40.0% |
| ! | CTTTCGCGACAACTTTTAAG+TGG | + | chr7.4:17824443-17824462 | None:intergenic | 40.0% |
| ! | TGTAGAGTGTCTTCAGGATA+GGG | + | chr7.4:17826221-17826240 | None:intergenic | 40.0% |
| ! | TTGTAGAGTGTCTTCAGGAT+AGG | + | chr7.4:17826222-17826241 | None:intergenic | 40.0% |
| !! | TTGAAGCAAGACTTGGTGAT+AGG | - | chr7.4:17823912-17823931 | MS.gene39077:intron | 40.0% |
| !!! | GTGGGAAGTATTTTGGGAAA+TGG | - | chr7.4:17823587-17823606 | MS.gene39077:CDS | 40.0% |
| AATGGTCCAGCAAGTTTCTC+AGG | + | chr7.4:17825823-17825842 | None:intergenic | 45.0% | |
| AGCTCCACAAATTCGAGCAT+TGG | + | chr7.4:17824931-17824950 | None:intergenic | 45.0% | |
| AGGATAGGGCAAAGTTCAAC+AGG | + | chr7.4:17826207-17826226 | None:intergenic | 45.0% | |
| ATCTCACGAGTTTCGGTTGA+AGG | + | chr7.4:17824070-17824089 | None:intergenic | 45.0% | |
| CACTGTTGTCCAAGAAGTGA+AGG | + | chr7.4:17826573-17826592 | None:intergenic | 45.0% | |
| CAGGGGAGTGAATAAACATG+TGG | + | chr7.4:17825175-17825194 | None:intergenic | 45.0% | |
| CTTGTCACACATGAGGTCAT+GGG | - | chr7.4:17825020-17825039 | MS.gene39077:intron | 45.0% | |
| TAATGCTGTCACCCATGTCA+GGG | + | chr7.4:17825924-17825943 | None:intergenic | 45.0% | |
| TAGCGGCAAAGGAATGATTC+AGG | - | chr7.4:17825942-17825961 | MS.gene39077:intron | 45.0% | |
| TAGTGACCTTGTCACACATG+AGG | - | chr7.4:17825013-17825032 | MS.gene39077:intron | 45.0% | |
| TCACGTCACGTCCAAATTAG+TGG | - | chr7.4:17824321-17824340 | MS.gene39077:CDS | 45.0% | |
| TCGTTAAACTGTCTCCGTTG+AGG | - | chr7.4:17825401-17825420 | MS.gene39077:intron | 45.0% | |
| TCTCAGGCTCTTCAGTTAAC+AGG | + | chr7.4:17825807-17825826 | None:intergenic | 45.0% | |
| TGCATTGCAAATTCGACAGC+TGG | - | chr7.4:17824834-17824853 | MS.gene39077:intron | 45.0% | |
| TGTTAAAAGGTCGTAACGCG+TGG | - | chr7.4:17825866-17825885 | MS.gene39077:intron | 45.0% | |
| TTCTACAGGCCTTCACTTCT+TGG | - | chr7.4:17826561-17826580 | MS.gene39077:CDS | 45.0% | |
| TTTGTGGAGCTGAGAAATGG+AGG | - | chr7.4:17824940-17824959 | MS.gene39077:intron | 45.0% | |
| ! | GGACAGAGTTCTAACCTCAA+CGG | + | chr7.4:17825418-17825437 | None:intergenic | 45.0% |
| !!! | TGCTTGGGGAAGTGTTTTTG+CGG | - | chr7.4:17823718-17823737 | MS.gene39077:intron | 45.0% |
| AAAGGTCGTAACGCGTGGTA+CGG | - | chr7.4:17825871-17825890 | MS.gene39077:intron | 50.0% | |
| CCATGACCTCATGTGTGACA+AGG | + | chr7.4:17825022-17825041 | None:intergenic | 50.0% | |
| CCTTGTCACACATGAGGTCA+TGG | - | chr7.4:17825019-17825038 | MS.gene39077:intron | 50.0% | |
| CTAATGCTGTCACCCATGTC+AGG | + | chr7.4:17825925-17825944 | None:intergenic | 50.0% | |
| CTCTGTCCCTTGAGACTACT+AGG | - | chr7.4:17825430-17825449 | MS.gene39077:intron | 50.0% | |
| GAAGAGCCTGAGAAACTTGC+TGG | - | chr7.4:17825814-17825833 | MS.gene39077:intron | 50.0% | |
| GACATGGGTGACAGCATTAG+CGG | - | chr7.4:17825925-17825944 | MS.gene39077:intron | 50.0% | |
| GCAATTGCAATGCGTTCTCG+TGG | + | chr7.4:17826528-17826547 | None:intergenic | 50.0% | |
| GGTGAACTAAGCCCTGACAT+GGG | - | chr7.4:17825910-17825929 | MS.gene39077:intron | 50.0% | |
| GTGTATTGGAGCAGGTGCTT+GGG | - | chr7.4:17823703-17823722 | MS.gene39077:intron | 50.0% | |
| TAGCCGGAGACAGGCATAAT+CGG | + | chr7.4:17825288-17825307 | None:intergenic | 50.0% | |
| TGTATTGGAGCAGGTGCTTG+GGG | - | chr7.4:17823704-17823723 | MS.gene39077:intron | 50.0% | |
| TGTGTATTGGAGCAGGTGCT+TGG | - | chr7.4:17823702-17823721 | MS.gene39077:intron | 50.0% | |
| !! | TTACTAGGGAGTGTCTGCAG+TGG | - | chr7.4:17826110-17826129 | MS.gene39077:CDS | 50.0% |
| CAGCCGATTATGCCTGTCTC+CGG | - | chr7.4:17825282-17825301 | MS.gene39077:CDS | 55.0% | |
| GGGTGAACTAAGCCCTGACA+TGG | - | chr7.4:17825909-17825928 | MS.gene39077:intron | 55.0% | |
| GGTGACAGCATTAGCGGCAA+AGG | - | chr7.4:17825931-17825950 | MS.gene39077:intron | 55.0% | |
| GTCACACATGAGGTCATGGG+TGG | - | chr7.4:17825023-17825042 | MS.gene39077:intron | 55.0% | |
| TACTGCAGCCACACTGTAGC+CGG | + | chr7.4:17825304-17825323 | None:intergenic | 55.0% | |
| ! | TTCGACAGCTGGAGTGCCTA+TGG | - | chr7.4:17824845-17824864 | MS.gene39077:intron | 55.0% |
| !! | CTAGGGAGTGTCTGCAGTGG+AGG | - | chr7.4:17826113-17826132 | MS.gene39077:CDS | 60.0% |
| GCCACACTGTAGCCGGAGAC+AGG | + | chr7.4:17825297-17825316 | None:intergenic | 65.0% | |
| GCCTGTCTCCGGCTACAGTG+TGG | - | chr7.4:17825293-17825312 | MS.gene39077:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 17823584 | 17826593 | 17823584 | ID=MS.gene39077 |
| chr7.4 | mRNA | 17823584 | 17826593 | 17823584 | ID=MS.gene39077.t1;Parent=MS.gene39077 |
| chr7.4 | exon | 17825954 | 17826593 | 17825954 | ID=MS.gene39077.t1.exon1;Parent=MS.gene39077.t1 |
| chr7.4 | CDS | 17825954 | 17826593 | 17825954 | ID=cds.MS.gene39077.t1;Parent=MS.gene39077.t1 |
| chr7.4 | exon | 17825103 | 17825324 | 17825103 | ID=MS.gene39077.t1.exon2;Parent=MS.gene39077.t1 |
| chr7.4 | CDS | 17825103 | 17825324 | 17825103 | ID=cds.MS.gene39077.t1;Parent=MS.gene39077.t1 |
| chr7.4 | exon | 17824214 | 17824461 | 17824214 | ID=MS.gene39077.t1.exon3;Parent=MS.gene39077.t1 |
| chr7.4 | CDS | 17824214 | 17824461 | 17824214 | ID=cds.MS.gene39077.t1;Parent=MS.gene39077.t1 |
| chr7.4 | exon | 17823921 | 17824060 | 17823921 | ID=MS.gene39077.t1.exon4;Parent=MS.gene39077.t1 |
| chr7.4 | CDS | 17823921 | 17824060 | 17823921 | ID=cds.MS.gene39077.t1;Parent=MS.gene39077.t1 |
| chr7.4 | exon | 17823584 | 17823707 | 17823584 | ID=MS.gene39077.t1.exon5;Parent=MS.gene39077.t1 |
| chr7.4 | CDS | 17823584 | 17823707 | 17823584 | ID=cds.MS.gene39077.t1;Parent=MS.gene39077.t1 |
| Gene Sequence |
| Protein sequence |
