Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39254.t1 | XP_013467790.1 | 83 | 459 | 70 | 3 | 1 | 458 | 1 | 452 | 9.10E-162 | 580.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39254.t1 | Q9SJ62 | 34.0 | 306 | 144 | 8 | 102 | 374 | 93 | 373 | 1.4e-17 | 92.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39254.t1 | A0A072VJ58 | 83.0 | 459 | 70 | 3 | 1 | 458 | 1 | 452 | 6.5e-162 | 580.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051279 | MS.gene39254 | 0.812763 | 3.60E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene39254 | 0.805194 | 1.50E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene39254 | 0.801784 | 7.65E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39254.t1 | MTR_1g055085 | 94.118 | 459 | 19 | 3 | 1 | 458 | 1 | 452 | 0.0 | 842 |
| MS.gene39254.t1 | MTR_7g106750 | 49.254 | 469 | 179 | 12 | 1 | 458 | 1 | 421 | 3.21e-112 | 337 |
| MS.gene39254.t1 | MTR_3g107050 | 45.413 | 218 | 84 | 7 | 233 | 419 | 210 | 423 | 1.92e-40 | 150 |
| MS.gene39254.t1 | MTR_1g012530 | 78.495 | 93 | 19 | 1 | 233 | 324 | 227 | 319 | 1.92e-39 | 148 |
| MS.gene39254.t1 | MTR_1g012530 | 60.526 | 114 | 37 | 3 | 196 | 308 | 197 | 303 | 5.13e-31 | 122 |
| MS.gene39254.t1 | MTR_1g075310 | 61.290 | 93 | 35 | 1 | 231 | 322 | 213 | 305 | 3.48e-27 | 112 |
| MS.gene39254.t1 | MTR_1g080690 | 47.794 | 136 | 61 | 3 | 207 | 332 | 162 | 297 | 1.90e-25 | 107 |
| MS.gene39254.t1 | MTR_7g115310 | 56.989 | 93 | 39 | 1 | 231 | 322 | 208 | 300 | 7.49e-21 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39254.t1 | AT2G35880 | 44.771 | 306 | 111 | 10 | 102 | 374 | 93 | 373 | 1.64e-51 | 180 |
| MS.gene39254.t1 | AT2G35880 | 44.771 | 306 | 111 | 10 | 102 | 374 | 93 | 373 | 1.64e-51 | 180 |
| MS.gene39254.t1 | AT2G35880 | 44.771 | 306 | 111 | 10 | 102 | 374 | 93 | 373 | 1.64e-51 | 180 |
| MS.gene39254.t1 | AT4G32330 | 46.448 | 183 | 89 | 5 | 149 | 322 | 113 | 295 | 7.24e-36 | 138 |
| MS.gene39254.t1 | AT4G32330 | 46.237 | 186 | 86 | 5 | 149 | 322 | 113 | 296 | 1.94e-35 | 137 |
| MS.gene39254.t1 | AT4G32330 | 46.237 | 186 | 86 | 5 | 149 | 322 | 113 | 296 | 1.94e-35 | 137 |
| MS.gene39254.t1 | AT4G32330 | 46.237 | 186 | 86 | 5 | 149 | 322 | 113 | 296 | 1.94e-35 | 137 |
| MS.gene39254.t1 | AT2G25480 | 70.330 | 91 | 26 | 1 | 233 | 322 | 181 | 271 | 8.94e-34 | 131 |
| MS.gene39254.t1 | AT2G25480 | 70.330 | 91 | 26 | 1 | 233 | 322 | 182 | 272 | 9.00e-34 | 131 |
| MS.gene39254.t1 | AT5G28646 | 47.794 | 136 | 68 | 2 | 187 | 319 | 34 | 169 | 9.52e-27 | 107 |
| MS.gene39254.t1 | AT5G28646 | 51.282 | 117 | 54 | 2 | 206 | 319 | 57 | 173 | 1.83e-26 | 106 |
| MS.gene39254.t1 | AT5G28646 | 51.282 | 117 | 54 | 2 | 206 | 319 | 57 | 173 | 1.83e-26 | 106 |
| MS.gene39254.t1 | AT3G04630 | 45.324 | 139 | 68 | 3 | 188 | 318 | 73 | 211 | 2.57e-25 | 105 |
| MS.gene39254.t1 | AT3G04630 | 51.754 | 114 | 47 | 3 | 213 | 318 | 99 | 212 | 2.86e-25 | 105 |
| MS.gene39254.t1 | AT3G04630 | 51.754 | 114 | 47 | 3 | 213 | 318 | 103 | 216 | 2.91e-25 | 105 |
| MS.gene39254.t1 | AT3G23090 | 53.448 | 116 | 47 | 2 | 212 | 320 | 167 | 282 | 4.85e-25 | 105 |
| MS.gene39254.t1 | AT3G23090 | 53.448 | 116 | 47 | 2 | 212 | 320 | 166 | 281 | 5.11e-25 | 105 |
| MS.gene39254.t1 | AT3G23090 | 53.448 | 116 | 47 | 2 | 212 | 320 | 202 | 317 | 7.49e-25 | 105 |
| MS.gene39254.t1 | AT3G23090 | 51.667 | 120 | 47 | 3 | 212 | 320 | 166 | 285 | 4.82e-24 | 103 |
| MS.gene39254.t1 | AT3G23090 | 51.667 | 120 | 47 | 3 | 212 | 320 | 202 | 321 | 7.33e-24 | 103 |
| MS.gene39254.t1 | AT1G54460 | 54.839 | 93 | 41 | 1 | 231 | 322 | 162 | 254 | 3.24e-21 | 94.7 |
| MS.gene39254.t1 | AT1G70950 | 55.000 | 80 | 33 | 2 | 218 | 296 | 313 | 390 | 1.92e-16 | 82.0 |
Find 80 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCAAGCTTCGGTGATTT+TGG | 0.078087 | 1.1:+42941555 | None:intergenic |
| ACTTCATAGGATACAGTTTC+TGG | 0.228034 | 1.1:+42941153 | None:intergenic |
| ATTCTTGTTCTATCCCATTC+TGG | 0.233527 | 1.1:+42941226 | None:intergenic |
| TTATGGTACCTTGGAACTTT+TGG | 0.244638 | 1.1:+42943457 | None:intergenic |
| GAAGTTGTGCCCTTCAAATT+TGG | 0.258397 | 1.1:+42943071 | None:intergenic |
| TGCCTCAGATGTCTGGCTTT+TGG | 0.269501 | 1.1:+42942654 | None:intergenic |
| GAAGACGAGAAACATGTTAT+TGG | 0.291831 | 1.1:-42943611 | MS.gene39254:CDS |
| TTTAACTTTGGTAGTAGATT+TGG | 0.320163 | 1.1:+42943094 | None:intergenic |
| TCCAAAAGTTGAGCTGAAAA+AGG | 0.320761 | 1.1:-42941681 | MS.gene39254:intron |
| TCAACCAAGGCAAAGGTAAA+AGG | 0.328570 | 1.1:-42941453 | MS.gene39254:CDS |
| TTTCTGGTGTGGAAGCATTA+AGG | 0.334990 | 1.1:+42941169 | None:intergenic |
| TCAAGCCAAGGTACAATCTA+AGG | 0.340660 | 1.1:-42941391 | MS.gene39254:CDS |
| GGGTTGAGATACTTCATTCT+TGG | 0.348940 | 1.1:+42943523 | None:intergenic |
| TTGCCATCAGTTTCTACATT+GGG | 0.349205 | 1.1:+42943503 | None:intergenic |
| AAGACGAGAAACATGTTATT+GGG | 0.349784 | 1.1:-42943610 | MS.gene39254:CDS |
| TCCAATGCCAAGTTTCTATA+AGG | 0.350934 | 1.1:-42941711 | MS.gene39254:CDS |
| GGTTGAGATACTTCATTCTT+GGG | 0.387284 | 1.1:+42943524 | None:intergenic |
| AGAAGAGAAAATTCAGGAAA+AGG | 0.396372 | 1.1:-42941931 | MS.gene39254:CDS |
| ATTTCTTGATCTCTGCCTCT+TGG | 0.396749 | 1.1:+42941762 | None:intergenic |
| CCTTTGTTTCTTCCAAGCTT+CGG | 0.397619 | 1.1:+42941546 | None:intergenic |
| GGGTTTGAATTCTGATCAAC+AGG | 0.407116 | 1.1:+42942302 | None:intergenic |
| ATCTGAAAATGAAGTTGTTA+TGG | 0.408821 | 1.1:-42943633 | MS.gene39254:CDS |
| TTTCTCATGTGGGATAGAAC+TGG | 0.409624 | 1.1:+42941491 | None:intergenic |
| ACATTGATGCCTCAGATGTC+TGG | 0.410213 | 1.1:+42942647 | None:intergenic |
| TTCTTCTGTTGTTTCTCATG+TGG | 0.415183 | 1.1:+42941480 | None:intergenic |
| ACATCGTCATCTTCTCTGTT+CGG | 0.419497 | 1.1:+42942263 | None:intergenic |
| CGCGGTCAGGAAAACAGAAA+TGG | 0.423043 | 1.1:-42941364 | MS.gene39254:CDS |
| CTTCAAATTTGGTTTAACTT+TGG | 0.432134 | 1.1:+42943082 | None:intergenic |
| TCTTCTGTTGTTTCTCATGT+GGG | 0.442092 | 1.1:+42941481 | None:intergenic |
| TTTATGTATGTGTTCTACCT+TGG | 0.453122 | 1.1:+42943580 | None:intergenic |
| GGTAAGAAGAGCAACGGCTC+TGG | 0.461766 | 1.1:-42942091 | MS.gene39254:CDS |
| ATATTTCTGAATACCAGAAT+GGG | 0.468042 | 1.1:-42941239 | MS.gene39254:CDS |
| CGCCCAAAATCACCGAAGCT+TGG | 0.469539 | 1.1:-42941558 | MS.gene39254:CDS |
| AATATTTCTGAATACCAGAA+TGG | 0.470112 | 1.1:-42941240 | MS.gene39254:CDS |
| GAGCCGTTGCTCTTCTTACC+AGG | 0.472493 | 1.1:+42942094 | None:intergenic |
| CAAAGTTAAACCAAATTTGA+AGG | 0.475426 | 1.1:-42943081 | MS.gene39254:CDS |
| AACTCCCACAGCAACTTCAT+AGG | 0.482114 | 1.1:+42941140 | None:intergenic |
| TCCTTATAGAAACTTGGCAT+TGG | 0.483568 | 1.1:+42941710 | None:intergenic |
| CTGATTTCGATGGGAATGTA+AGG | 0.485692 | 1.1:+42943012 | None:intergenic |
| AGCTCGTTCTTCCAATCTGA+AGG | 0.486684 | 1.1:+42942063 | None:intergenic |
| AATCACTGAGACCTCGTTTG+TGG | 0.511682 | 1.1:+42941326 | None:intergenic |
| GGAGGTTCCTTATAGAAACT+TGG | 0.520048 | 1.1:+42941704 | None:intergenic |
| AATCTAAGGAAATCGCGGTC+AGG | 0.523799 | 1.1:-42941377 | MS.gene39254:CDS |
| AAAGTTAAACCAAATTTGAA+GGG | 0.525106 | 1.1:-42943080 | MS.gene39254:CDS |
| AAAGTTAGAAGAGAAAATTC+AGG | 0.529661 | 1.1:-42941937 | MS.gene39254:CDS |
| TTACTATCTACCAGTTTGGA+AGG | 0.546887 | 1.1:-42942699 | MS.gene39254:intron |
| GGAATGTAAGGCTCTTTGAA+AGG | 0.548770 | 1.1:+42943024 | None:intergenic |
| TCAAGACGAGCTGATTTCGA+TGG | 0.562565 | 1.1:+42943002 | None:intergenic |
| GTTGCCATCAGTTTCTACAT+TGG | 0.564109 | 1.1:+42943502 | None:intergenic |
| GAATGATTCAACCAAGGCAA+AGG | 0.571396 | 1.1:-42941460 | MS.gene39254:CDS |
| GATTTCCTTAGATTGTACCT+TGG | 0.572341 | 1.1:+42941386 | None:intergenic |
| TAGGAACCTGGTGTCAAAAG+TGG | 0.578105 | 1.1:-42943134 | MS.gene39254:CDS |
| CTATGAAGAAAAGCACTGAT+GGG | 0.582170 | 1.1:-42942977 | MS.gene39254:CDS |
| AAGAAAGTTGACAAACTCAA+AGG | 0.583844 | 1.1:-42942898 | MS.gene39254:CDS |
| CCGAAGCTTGGAAGAAACAA+AGG | 0.587414 | 1.1:-42941546 | MS.gene39254:CDS |
| GTGAATTCATGTTAGGAACC+TGG | 0.592840 | 1.1:-42943146 | MS.gene39254:intron |
| GCTATCAGAAGTCTTACTCC+TGG | 0.593123 | 1.1:-42942112 | MS.gene39254:intron |
| ATAGGATACAGTTTCTGGTG+TGG | 0.593998 | 1.1:+42941158 | None:intergenic |
| CAAGACGAGCTGATTTCGAT+GGG | 0.596069 | 1.1:+42943003 | None:intergenic |
| GCTATGAAGAAAAGCACTGA+TGG | 0.596407 | 1.1:-42942978 | MS.gene39254:CDS |
| TGTATCCTATGAAGTTGCTG+TGG | 0.597144 | 1.1:-42941145 | MS.gene39254:CDS |
| TGAATTAAGAGTTGAAGTCA+CGG | 0.602729 | 1.1:+42942920 | None:intergenic |
| CAACCCAATGTAGAAACTGA+TGG | 0.604196 | 1.1:-42943506 | MS.gene39254:CDS |
| ACGAGCTGAAAAGCGAAGAG+AGG | 0.612842 | 1.1:-42942047 | MS.gene39254:intron |
| CATAAAGAAGTTGAAGACAA+TGG | 0.630212 | 1.1:-42943563 | MS.gene39254:CDS |
| ACAATGGAAACTCTAAACAA+AGG | 0.631858 | 1.1:-42942863 | MS.gene39254:CDS |
| ATAGAACAAGAATCACAGAA+TGG | 0.634173 | 1.1:-42941216 | MS.gene39254:CDS |
| TATTCAGAAATATTAACAGA+AGG | 0.636984 | 1.1:+42941249 | None:intergenic |
| TGTCATGTCTTCCACAAACG+AGG | 0.638979 | 1.1:-42941337 | MS.gene39254:CDS |
| GTATCCTATGAAGTTGCTGT+GGG | 0.642363 | 1.1:-42941144 | MS.gene39254:CDS |
| TCTTGCTCAGAACAGTGTGT+TGG | 0.650728 | 1.1:-42941193 | MS.gene39254:CDS |
| AGACGAGAAACATGTTATTG+GGG | 0.652851 | 1.1:-42943609 | MS.gene39254:CDS |
| TGCCAAAAGCCAGACATCTG+AGG | 0.654628 | 1.1:-42942656 | MS.gene39254:CDS |
| TAATCTGCAAGAGAAATCAA+AGG | 0.655226 | 1.1:-42941895 | MS.gene39254:intron |
| AAAGTTGACAAACTCAAAGG+AGG | 0.655478 | 1.1:-42942895 | MS.gene39254:CDS |
| ACTCCTGGTAAGAAGAGCAA+CGG | 0.659089 | 1.1:-42942097 | MS.gene39254:CDS |
| GGTACAATCTAAGGAAATCG+CGG | 0.672899 | 1.1:-42941382 | MS.gene39254:CDS |
| TGTTATTGGGGAAACAACCA+AGG | 0.683870 | 1.1:-42943597 | MS.gene39254:CDS |
| AAATAGCTTTAAAAGCTCTG+AGG | 0.685220 | 1.1:-42942823 | MS.gene39254:intron |
| ACAGAAGAATGATTCAACCA+AGG | 0.689453 | 1.1:-42941466 | MS.gene39254:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTCTTTTGATTTT+TGG | - | chr1.1:42942982-42943001 | MS.gene39254:CDS | 10.0% |
| !! | AAATTTCATGAATCTATTAT+AGG | + | chr1.1:42942634-42942653 | None:intergenic | 15.0% |
| !! | AAGAATTCATATATATCTTT+AGG | - | chr1.1:42942386-42942405 | MS.gene39254:intron | 15.0% |
| !! | TTAAAATATTATGTCTCATT+AGG | - | chr1.1:42942566-42942585 | MS.gene39254:intron | 15.0% |
| !! | AAAGTTAAACCAAATTTGAA+GGG | - | chr1.1:42941695-42941714 | MS.gene39254:CDS | 20.0% |
| !! | AAATACAACAGTATAAGAAA+TGG | + | chr1.1:42943171-42943190 | None:intergenic | 20.0% |
| !! | AGTTTATAGAAATAGCTTAT+AGG | + | chr1.1:42941532-42941551 | None:intergenic | 20.0% |
| !! | ATCAAACTATATATTGTTAG+AGG | + | chr1.1:42943125-42943144 | None:intergenic | 20.0% |
| !! | TATAGAAAAAGAAGAAAGAA+TGG | + | chr1.1:42942611-42942630 | None:intergenic | 20.0% |
| !! | TATTCAGAAATATTAACAGA+AGG | + | chr1.1:42943529-42943548 | None:intergenic | 20.0% |
| !! | TTATTTAACAACTTCACAAT+AGG | - | chr1.1:42941355-42941374 | MS.gene39254:CDS | 20.0% |
| !! | TTCAATATCAATATGCTTTA+AGG | + | chr1.1:42942766-42942785 | None:intergenic | 20.0% |
| !!! | AACTGTATCGTTTTAAATTA+TGG | - | chr1.1:42942166-42942185 | MS.gene39254:intron | 20.0% |
| !!! | CTTAGATATTTTTTTCCATA+TGG | - | chr1.1:42942920-42942939 | MS.gene39254:CDS | 20.0% |
| !!! | TAATTGTGATACATTGATTA+TGG | + | chr1.1:42941338-42941357 | None:intergenic | 20.0% |
| !!! | TAATTTAAAACGATACAGTT+TGG | + | chr1.1:42942166-42942185 | None:intergenic | 20.0% |
| ! | AAAGTTAGAAGAGAAAATTC+AGG | - | chr1.1:42942838-42942857 | MS.gene39254:CDS | 25.0% |
| ! | ATAGCTTCTTTACATTTCAT+TGG | - | chr1.1:42942017-42942036 | MS.gene39254:intron | 25.0% |
| ! | ATCTGAAAATGAAGTTGTTA+TGG | - | chr1.1:42941142-42941161 | MS.gene39254:CDS | 25.0% |
| ! | ATTTAGTAAATATTGGGAGT+TGG | + | chr1.1:42942319-42942338 | None:intergenic | 25.0% |
| ! | CAAAGTTAAACCAAATTTGA+AGG | - | chr1.1:42941694-42941713 | MS.gene39254:CDS | 25.0% |
| ! | TTTAGTAAATATTGGGAGTT+GGG | + | chr1.1:42942318-42942337 | None:intergenic | 25.0% |
| !! | AATATTTCTGAATACCAGAA+TGG | - | chr1.1:42943535-42943554 | MS.gene39254:CDS | 25.0% |
| !! | ATATTTCTGAATACCAGAAT+GGG | - | chr1.1:42943536-42943555 | MS.gene39254:CDS | 25.0% |
| !! | CTTCAAATTTGGTTTAACTT+TGG | + | chr1.1:42941696-42941715 | None:intergenic | 25.0% |
| !! | TTTAACTTTGGTAGTAGATT+TGG | + | chr1.1:42941684-42941703 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTTGATTTTTGGC+AGG | - | chr1.1:42942986-42943005 | MS.gene39254:CDS | 25.0% |
| AAGAAAGTTGACAAACTCAA+AGG | - | chr1.1:42941877-42941896 | MS.gene39254:intron | 30.0% | |
| AAGACGAGAAACATGTTATT+GGG | - | chr1.1:42941165-42941184 | MS.gene39254:CDS | 30.0% | |
| AAGCAATTATGATACGTGTA+TGG | + | chr1.1:42941408-42941427 | None:intergenic | 30.0% | |
| AATCAAAAAAACTCAAGCCA+AGG | - | chr1.1:42943372-42943391 | MS.gene39254:intron | 30.0% | |
| ACAATGGAAACTCTAAACAA+AGG | - | chr1.1:42941912-42941931 | MS.gene39254:CDS | 30.0% | |
| AGAAGAGAAAATTCAGGAAA+AGG | - | chr1.1:42942844-42942863 | MS.gene39254:CDS | 30.0% | |
| ATAGAACAAGAATCACAGAA+TGG | - | chr1.1:42943559-42943578 | MS.gene39254:CDS | 30.0% | |
| ATGAACGAATTATGACCTTA+TGG | - | chr1.1:42942431-42942450 | MS.gene39254:intron | 30.0% | |
| CAAACAAAAAGTAATGAGCA+TGG | + | chr1.1:42942046-42942065 | None:intergenic | 30.0% | |
| CAAATAGCGTAAATGATCAT+TGG | + | chr1.1:42941447-42941466 | None:intergenic | 30.0% | |
| CAATGAAAACTCAAACCATA+TGG | + | chr1.1:42942938-42942957 | None:intergenic | 30.0% | |
| CAATGATCATTTACGCTATT+TGG | - | chr1.1:42941445-42941464 | MS.gene39254:CDS | 30.0% | |
| CATAAAGAAGTTGAAGACAA+TGG | - | chr1.1:42941212-42941231 | MS.gene39254:CDS | 30.0% | |
| CTATCAAGCTACATAGAAAA+AGG | + | chr1.1:42942001-42942020 | None:intergenic | 30.0% | |
| CTGGATGAAAAGGATAAAAT+AGG | + | chr1.1:42942810-42942829 | None:intergenic | 30.0% | |
| GCAAAAACAAGTATAGTTGA+AGG | - | chr1.1:42943487-42943506 | MS.gene39254:CDS | 30.0% | |
| TAAAAACTCCAAAAGTTCCA+AGG | - | chr1.1:42941310-42941329 | MS.gene39254:CDS | 30.0% | |
| TAATCTGCAAGAGAAATCAA+AGG | - | chr1.1:42942880-42942899 | MS.gene39254:CDS | 30.0% | |
| TGAATTAAGAGTTGAAGTCA+CGG | + | chr1.1:42941858-42941877 | None:intergenic | 30.0% | |
| TTCGTTCATCAGAAATATGT+TGG | + | chr1.1:42942420-42942439 | None:intergenic | 30.0% | |
| TTGAGAAAAACTGGATGAAA+AGG | + | chr1.1:42942820-42942839 | None:intergenic | 30.0% | |
| TTTATGTATGTGTTCTACCT+TGG | + | chr1.1:42941198-42941217 | None:intergenic | 30.0% | |
| ! | ATACATTGATTATGGTACCT+TGG | + | chr1.1:42941330-42941349 | None:intergenic | 30.0% |
| ! | CAATCTTTAATGCTAGTCTA+AGG | - | chr1.1:42942346-42942365 | MS.gene39254:intron | 30.0% |
| ! | CTTCTAACTTTGAGAAAAAC+TGG | + | chr1.1:42942829-42942848 | None:intergenic | 30.0% |
| ! | TTGAAGCTGCATAACAATTT+TGG | + | chr1.1:42942199-42942218 | None:intergenic | 30.0% |
| !! | AAATAGCTTTAAAAGCTCTG+AGG | - | chr1.1:42941952-42941971 | MS.gene39254:intron | 30.0% |
| !! | CATATGGTTTGAGTTTTCAT+TGG | - | chr1.1:42942936-42942955 | MS.gene39254:CDS | 30.0% |
| !!! | CTATACTTGTTTTTGCATCT+TGG | + | chr1.1:42943483-42943502 | None:intergenic | 30.0% |
| !!! | TTGGCTTGAGTTTTTTTGAT+TGG | + | chr1.1:42943373-42943392 | None:intergenic | 30.0% |
| AAAGTTGACAAACTCAAAGG+AGG | - | chr1.1:42941880-42941899 | MS.gene39254:intron | 35.0% | |
| AAGGAGGCAAAAACAAACAA+TGG | - | chr1.1:42941896-42941915 | MS.gene39254:CDS | 35.0% | |
| ACAGAAGAATGATTCAACCA+AGG | - | chr1.1:42943309-42943328 | MS.gene39254:intron | 35.0% | |
| ACTTCATAGGATACAGTTTC+TGG | + | chr1.1:42943625-42943644 | None:intergenic | 35.0% | |
| AGACGAGAAACATGTTATTG+GGG | - | chr1.1:42941166-42941185 | MS.gene39254:CDS | 35.0% | |
| AGCATATTTGACCTCAATAG+TGG | - | chr1.1:42942227-42942246 | MS.gene39254:intron | 35.0% | |
| ATTCTTGTTCTATCCCATTC+TGG | + | chr1.1:42943552-42943571 | None:intergenic | 35.0% | |
| CCAAACTGGTAGATAGTAAA+AGG | + | chr1.1:42942075-42942094 | None:intergenic | 35.0% | |
| CTCATTAGGATATGAACTTG+CGG | - | chr1.1:42942580-42942599 | MS.gene39254:intron | 35.0% | |
| GAAGACGAGAAACATGTTAT+TGG | - | chr1.1:42941164-42941183 | MS.gene39254:CDS | 35.0% | |
| GATTTCCTTAGATTGTACCT+TGG | + | chr1.1:42943392-42943411 | None:intergenic | 35.0% | |
| GGTTGAGATACTTCATTCTT+GGG | + | chr1.1:42941254-42941273 | None:intergenic | 35.0% | |
| GTTCCTAACATGAATTCACA+AGG | + | chr1.1:42941628-42941647 | None:intergenic | 35.0% | |
| TCCAAAAGTTGAGCTGAAAA+AGG | - | chr1.1:42943094-42943113 | MS.gene39254:CDS | 35.0% | |
| TCCAATGCCAAGTTTCTATA+AGG | - | chr1.1:42943064-42943083 | MS.gene39254:CDS | 35.0% | |
| TCCTTATAGAAACTTGGCAT+TGG | + | chr1.1:42943068-42943087 | None:intergenic | 35.0% | |
| TGACCTTGTGAATTCATGTT+AGG | - | chr1.1:42941622-42941641 | MS.gene39254:intron | 35.0% | |
| TTACTATCTACCAGTTTGGA+AGG | - | chr1.1:42942076-42942095 | MS.gene39254:CDS | 35.0% | |
| TTGCCATCAGTTTCTACATT+GGG | + | chr1.1:42941275-42941294 | None:intergenic | 35.0% | |
| ! | AACGATACAGTTTGGAGTTT+AGG | + | chr1.1:42942158-42942177 | None:intergenic | 35.0% |
| ! | CACATTTTGCCTCAATATCA+TGG | - | chr1.1:42942261-42942280 | MS.gene39254:CDS | 35.0% |
| ! | CCTTTTACTATCTACCAGTT+TGG | - | chr1.1:42942072-42942091 | MS.gene39254:CDS | 35.0% |
| ! | TTATGGTACCTTGGAACTTT+TGG | + | chr1.1:42941321-42941340 | None:intergenic | 35.0% |
| !! | CTATGAAGAAAAGCACTGAT+GGG | - | chr1.1:42941798-42941817 | MS.gene39254:intron | 35.0% |
| !! | TCTTCTGTTGTTTCTCATGT+GGG | + | chr1.1:42943297-42943316 | None:intergenic | 35.0% |
| !! | TTCTTCTGTTGTTTCTCATG+TGG | + | chr1.1:42943298-42943317 | None:intergenic | 35.0% |
| !! | TTTTTCAGCTCAACTTTTGG+AGG | + | chr1.1:42943095-42943114 | None:intergenic | 35.0% |
| !!! | ACCTTTTTCAGCTCAACTTT+TGG | + | chr1.1:42943098-42943117 | None:intergenic | 35.0% |
| !!! | CTGCATAACAATTTTGGTTG+CGG | + | chr1.1:42942193-42942212 | None:intergenic | 35.0% |
| !!! | TTGTTTTTGCATCTTGGTCA+TGG | + | chr1.1:42943477-42943496 | None:intergenic | 35.0% |
| AACAAATGCAGCCACTATTG+AGG | + | chr1.1:42942241-42942260 | None:intergenic | 40.0% | |
| ACATCGTCATCTTCTCTGTT+CGG | + | chr1.1:42942515-42942534 | None:intergenic | 40.0% | |
| ATTTCTTGATCTCTGCCTCT+TGG | + | chr1.1:42943016-42943035 | None:intergenic | 40.0% | |
| CAACCCAATGTAGAAACTGA+TGG | - | chr1.1:42941269-42941288 | MS.gene39254:CDS | 40.0% | |
| CAGTCATGTGGAAAACCATA+AGG | + | chr1.1:42942449-42942468 | None:intergenic | 40.0% | |
| CTGATTTCGATGGGAATGTA+AGG | + | chr1.1:42941766-42941785 | None:intergenic | 40.0% | |
| GAAGTTGTGCCCTTCAAATT+TGG | + | chr1.1:42941707-42941726 | None:intergenic | 40.0% | |
| GAATGATTCAACCAAGGCAA+AGG | - | chr1.1:42943315-42943334 | MS.gene39254:intron | 40.0% | |
| GGAATGTAAGGCTCTTTGAA+AGG | + | chr1.1:42941754-42941773 | None:intergenic | 40.0% | |
| GGAGGTTCCTTATAGAAACT+TGG | + | chr1.1:42943074-42943093 | None:intergenic | 40.0% | |
| GGGTTGAGATACTTCATTCT+TGG | + | chr1.1:42941255-42941274 | None:intergenic | 40.0% | |
| GGGTTTGAATTCTGATCAAC+AGG | + | chr1.1:42942476-42942495 | None:intergenic | 40.0% | |
| GGTACAATCTAAGGAAATCG+CGG | - | chr1.1:42943393-42943412 | MS.gene39254:intron | 40.0% | |
| GTATCCTATGAAGTTGCTGT+GGG | - | chr1.1:42943631-42943650 | MS.gene39254:CDS | 40.0% | |
| GTGAATTCATGTTAGGAACC+TGG | - | chr1.1:42941629-42941648 | MS.gene39254:intron | 40.0% | |
| GTTGCCATCAGTTTCTACAT+TGG | + | chr1.1:42941276-42941295 | None:intergenic | 40.0% | |
| TCAACCAAGGCAAAGGTAAA+AGG | - | chr1.1:42943322-42943341 | MS.gene39254:intron | 40.0% | |
| TCAAGCCAAGGTACAATCTA+AGG | - | chr1.1:42943384-42943403 | MS.gene39254:intron | 40.0% | |
| TGTATCCTATGAAGTTGCTG+TGG | - | chr1.1:42943630-42943649 | MS.gene39254:CDS | 40.0% | |
| TGTTATTGGGGAAACAACCA+AGG | - | chr1.1:42941178-42941197 | MS.gene39254:CDS | 40.0% | |
| TTTCTCATGTGGGATAGAAC+TGG | + | chr1.1:42943287-42943306 | None:intergenic | 40.0% | |
| ! | ATAGCCTTTTACCTTTGCCT+TGG | + | chr1.1:42943329-42943348 | None:intergenic | 40.0% |
| ! | CCTTTGTTTCTTCCAAGCTT+CGG | + | chr1.1:42943232-42943251 | None:intergenic | 40.0% |
| ! | CTCTGGATTTTCCTTCAGAT+TGG | - | chr1.1:42942701-42942720 | MS.gene39254:intron | 40.0% |
| ! | GTTTTCATTGGCAGCTCTTT+AGG | - | chr1.1:42942948-42942967 | MS.gene39254:CDS | 40.0% |
| ! | TGCCTCAATATCATGGATTG+TGG | - | chr1.1:42942268-42942287 | MS.gene39254:CDS | 40.0% |
| ! | TTCCAAGCTTCGGTGATTTT+GGG | + | chr1.1:42943222-42943241 | None:intergenic | 40.0% |
| !! | ATAGGATACAGTTTCTGGTG+TGG | + | chr1.1:42943620-42943639 | None:intergenic | 40.0% |
| !! | GCTATGAAGAAAAGCACTGA+TGG | - | chr1.1:42941797-42941816 | MS.gene39254:intron | 40.0% |
| !! | TTTCTGGTGTGGAAGCATTA+AGG | + | chr1.1:42943609-42943628 | None:intergenic | 40.0% |
| AACTCCCACAGCAACTTCAT+AGG | + | chr1.1:42943638-42943657 | None:intergenic | 45.0% | |
| AATCACTGAGACCTCGTTTG+TGG | + | chr1.1:42943452-42943471 | None:intergenic | 45.0% | |
| AATCTAAGGAAATCGCGGTC+AGG | - | chr1.1:42943398-42943417 | MS.gene39254:intron | 45.0% | |
| ACATTGATGCCTCAGATGTC+TGG | + | chr1.1:42942131-42942150 | None:intergenic | 45.0% | |
| ACTCCTGGTAAGAAGAGCAA+CGG | - | chr1.1:42942678-42942697 | MS.gene39254:CDS | 45.0% | |
| AGCTCGTTCTTCCAATCTGA+AGG | + | chr1.1:42942715-42942734 | None:intergenic | 45.0% | |
| CCGAAGCTTGGAAGAAACAA+AGG | - | chr1.1:42943229-42943248 | MS.gene39254:intron | 45.0% | |
| CGCCACAATCCATGATATTG+AGG | + | chr1.1:42942273-42942292 | None:intergenic | 45.0% | |
| GCTATCAGAAGTCTTACTCC+TGG | - | chr1.1:42942663-42942682 | MS.gene39254:CDS | 45.0% | |
| TCTTGCTCAGAACAGTGTGT+TGG | - | chr1.1:42943582-42943601 | MS.gene39254:CDS | 45.0% | |
| TGTCATGTCTTCCACAAACG+AGG | - | chr1.1:42943438-42943457 | MS.gene39254:intron | 45.0% | |
| ! | CAAGACGAGCTGATTTCGAT+GGG | + | chr1.1:42941775-42941794 | None:intergenic | 45.0% |
| ! | CTTCCAAGCTTCGGTGATTT+TGG | + | chr1.1:42943223-42943242 | None:intergenic | 45.0% |
| ! | CTTTTGGCAACTGCATTCAC+TGG | + | chr1.1:42942108-42942127 | None:intergenic | 45.0% |
| ! | TAGGAACCTGGTGTCAAAAG+TGG | - | chr1.1:42941641-42941660 | MS.gene39254:intron | 45.0% |
| ! | TCAAGACGAGCTGATTTCGA+TGG | + | chr1.1:42941776-42941795 | None:intergenic | 45.0% |
| !! | GCAATACCACTTTTGACACC+AGG | + | chr1.1:42941650-42941669 | None:intergenic | 45.0% |
| !! | TCGGCTTTTCACTTTTCGCA+GGG | + | chr1.1:42942496-42942515 | None:intergenic | 45.0% |
| !! | TTCAGCTCAACTTTTGGAGG+AGG | + | chr1.1:42943092-42943111 | None:intergenic | 45.0% |
| !! | TTCGGCTTTTCACTTTTCGC+AGG | + | chr1.1:42942497-42942516 | None:intergenic | 45.0% |
| !! | TTTTTGGCAGGAAAGCCAAG+AGG | - | chr1.1:42942998-42943017 | MS.gene39254:CDS | 45.0% |
| !! | ATTTATAATTTAGTAAATAT+TGG | + | chr1.1:42942326-42942345 | None:intergenic | 5.0% |
| !! | TTTATAATTTAGTAAATATT+GGG | + | chr1.1:42942325-42942344 | None:intergenic | 5.0% |
| ACGAGCTGAAAAGCGAAGAG+AGG | - | chr1.1:42942728-42942747 | MS.gene39254:intron | 50.0% | |
| CGCGGTCAGGAAAACAGAAA+TGG | - | chr1.1:42943411-42943430 | MS.gene39254:intron | 50.0% | |
| CGTGTATGGATCATCTGCAG+CGG | + | chr1.1:42941394-42941413 | None:intergenic | 50.0% | |
| TCAACAGGTCTGCAGTCATG+TGG | + | chr1.1:42942461-42942480 | None:intergenic | 50.0% | |
| TGCCAAAAGCCAGACATCTG+AGG | - | chr1.1:42942119-42942138 | MS.gene39254:intron | 50.0% | |
| ! | GGTGATTTTGGGCGTGTTGT+AGG | + | chr1.1:42943211-42943230 | None:intergenic | 50.0% |
| !!! | TGCCTCAGATGTCTGGCTTT+TGG | + | chr1.1:42942124-42942143 | None:intergenic | 50.0% |
| CGCCCAAAATCACCGAAGCT+TGG | - | chr1.1:42943217-42943236 | MS.gene39254:intron | 55.0% | |
| CTGGCGTAGACCTTCCAAAC+TGG | + | chr1.1:42942089-42942108 | None:intergenic | 55.0% | |
| GAGCCGTTGCTCTTCTTACC+AGG | + | chr1.1:42942684-42942703 | None:intergenic | 55.0% | |
| GATCATCTGCAGCGGTTGCA+CGG | + | chr1.1:42941386-42941405 | None:intergenic | 55.0% | |
| GGTAAGAAGAGCAACGGCTC+TGG | - | chr1.1:42942684-42942703 | MS.gene39254:CDS | 55.0% | |
| GGGAGTTGGGATTGCTGTCG+TGG | + | chr1.1:42942305-42942324 | None:intergenic | 60.0% | |
| TCTGCAGCGGTTGCACGGTG+CGG | + | chr1.1:42941381-42941400 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 42941137 | 42943660 | 42941137 | ID=MS.gene39254 |
| chr1.1 | mRNA | 42941137 | 42943660 | 42941137 | ID=MS.gene39254.t1;Parent=MS.gene39254 |
| chr1.1 | exon | 42943466 | 42943660 | 42943466 | ID=MS.gene39254.t1.exon1;Parent=MS.gene39254.t1 |
| chr1.1 | CDS | 42943466 | 42943660 | 42943466 | ID=cds.MS.gene39254.t1;Parent=MS.gene39254.t1 |
| chr1.1 | exon | 42942824 | 42943153 | 42942824 | ID=MS.gene39254.t1.exon2;Parent=MS.gene39254.t1 |
| chr1.1 | CDS | 42942824 | 42943153 | 42942824 | ID=cds.MS.gene39254.t1;Parent=MS.gene39254.t1 |
| chr1.1 | exon | 42942649 | 42942707 | 42942649 | ID=MS.gene39254.t1.exon3;Parent=MS.gene39254.t1 |
| chr1.1 | CDS | 42942649 | 42942707 | 42942649 | ID=cds.MS.gene39254.t1;Parent=MS.gene39254.t1 |
| chr1.1 | exon | 42942248 | 42942325 | 42942248 | ID=MS.gene39254.t1.exon4;Parent=MS.gene39254.t1 |
| chr1.1 | CDS | 42942248 | 42942325 | 42942248 | ID=cds.MS.gene39254.t1;Parent=MS.gene39254.t1 |
| chr1.1 | exon | 42942048 | 42942126 | 42942048 | ID=MS.gene39254.t1.exon5;Parent=MS.gene39254.t1 |
| chr1.1 | CDS | 42942048 | 42942126 | 42942048 | ID=cds.MS.gene39254.t1;Parent=MS.gene39254.t1 |
| chr1.1 | exon | 42941896 | 42941967 | 42941896 | ID=MS.gene39254.t1.exon6;Parent=MS.gene39254.t1 |
| chr1.1 | CDS | 42941896 | 42941967 | 42941896 | ID=cds.MS.gene39254.t1;Parent=MS.gene39254.t1 |
| chr1.1 | exon | 42941682 | 42941789 | 42941682 | ID=MS.gene39254.t1.exon7;Parent=MS.gene39254.t1 |
| chr1.1 | CDS | 42941682 | 42941789 | 42941682 | ID=cds.MS.gene39254.t1;Parent=MS.gene39254.t1 |
| chr1.1 | exon | 42941137 | 42941592 | 42941137 | ID=MS.gene39254.t1.exon8;Parent=MS.gene39254.t1 |
| chr1.1 | CDS | 42941137 | 42941592 | 42941137 | ID=cds.MS.gene39254.t1;Parent=MS.gene39254.t1 |
| Gene Sequence |
| Protein sequence |
