Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39346.t1 | XP_003626830.1 | 97.1 | 208 | 6 | 0 | 1 | 208 | 1 | 208 | 2.40E-109 | 404.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39346.t1 | O04905 | 83.7 | 196 | 30 | 1 | 13 | 208 | 8 | 201 | 1.9e-91 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39346.t1 | B7FMF1 | 97.1 | 208 | 6 | 0 | 1 | 208 | 1 | 208 | 1.7e-109 | 404.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39346 | MS.gene011389 | PPI |
| MS.gene39346 | MS.gene065461 | PPI |
| MS.gene39346 | MS.gene033347 | PPI |
| MS.gene39346 | MS.gene057156 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39346.t1 | MTR_8g009520 | 97.115 | 208 | 6 | 0 | 1 | 208 | 1 | 208 | 5.59e-150 | 415 |
| MS.gene39346.t1 | MTR_4g035850 | 60.753 | 186 | 73 | 0 | 22 | 207 | 32 | 217 | 3.17e-81 | 241 |
| MS.gene39346.t1 | MTR_5g068940 | 60.753 | 186 | 73 | 0 | 22 | 207 | 32 | 217 | 3.50e-81 | 241 |
| MS.gene39346.t1 | MTR_4g035850 | 60.753 | 186 | 73 | 0 | 22 | 207 | 55 | 240 | 9.05e-81 | 241 |
| MS.gene39346.t1 | MTR_4g035170 | 34.375 | 128 | 81 | 2 | 19 | 144 | 85 | 211 | 1.08e-23 | 96.3 |
| MS.gene39346.t1 | MTR_2g461290 | 27.803 | 223 | 129 | 5 | 6 | 201 | 59 | 276 | 1.09e-23 | 98.6 |
| MS.gene39346.t1 | MTR_4g103800 | 26.066 | 211 | 123 | 4 | 24 | 201 | 32 | 242 | 9.73e-20 | 84.3 |
| MS.gene39346.t1 | MTR_1g067050 | 25.888 | 197 | 101 | 4 | 27 | 180 | 59 | 253 | 3.18e-16 | 75.5 |
| MS.gene39346.t1 | MTR_7g100530 | 24.424 | 217 | 122 | 4 | 18 | 193 | 34 | 249 | 1.53e-15 | 73.6 |
| MS.gene39346.t1 | MTR_4g103800 | 32.184 | 87 | 58 | 1 | 24 | 109 | 32 | 118 | 5.72e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39346.t1 | AT5G26667 | 80.769 | 208 | 33 | 2 | 1 | 208 | 1 | 201 | 5.77e-123 | 346 |
| MS.gene39346.t1 | AT5G26667 | 80.769 | 208 | 33 | 2 | 1 | 208 | 1 | 201 | 5.77e-123 | 346 |
| MS.gene39346.t1 | AT5G26667 | 80.769 | 208 | 33 | 2 | 1 | 208 | 1 | 201 | 5.77e-123 | 346 |
| MS.gene39346.t1 | AT5G26667 | 81.553 | 206 | 31 | 2 | 1 | 206 | 1 | 199 | 9.90e-123 | 346 |
| MS.gene39346.t1 | AT3G60180 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 1.61e-108 | 310 |
| MS.gene39346.t1 | AT3G60180 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 1.61e-108 | 310 |
| MS.gene39346.t1 | AT4G25280 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 1.14e-78 | 236 |
| MS.gene39346.t1 | AT4G25280 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 1.14e-78 | 236 |
| MS.gene39346.t1 | AT3G60961 | 68.421 | 133 | 38 | 1 | 73 | 201 | 1 | 133 | 5.54e-66 | 199 |
| MS.gene39346.t1 | AT5G35170 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 4.19e-27 | 108 |
| MS.gene39346.t1 | AT5G35170 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 4.90e-27 | 108 |
| MS.gene39346.t1 | AT5G47840 | 30.144 | 209 | 116 | 4 | 20 | 201 | 63 | 268 | 1.76e-26 | 103 |
| MS.gene39346.t1 | AT5G47840 | 37.008 | 127 | 77 | 2 | 20 | 144 | 63 | 188 | 6.26e-26 | 101 |
| MS.gene39346.t1 | AT5G63400 | 27.488 | 211 | 120 | 4 | 24 | 201 | 36 | 246 | 1.59e-20 | 86.7 |
| MS.gene39346.t1 | AT5G50370 | 27.723 | 202 | 112 | 5 | 23 | 191 | 37 | 237 | 4.71e-18 | 80.1 |
| MS.gene39346.t1 | AT2G37250 | 25.238 | 210 | 112 | 3 | 27 | 193 | 57 | 264 | 2.98e-16 | 75.5 |
| MS.gene39346.t1 | AT2G39270 | 27.411 | 197 | 98 | 4 | 27 | 180 | 70 | 264 | 2.69e-15 | 73.2 |
| MS.gene39346.t1 | AT5G63400 | 31.200 | 125 | 82 | 2 | 24 | 144 | 36 | 160 | 6.01e-14 | 67.8 |
| MS.gene39346.t1 | AT5G50370 | 27.072 | 181 | 98 | 5 | 23 | 170 | 37 | 216 | 7.52e-14 | 68.2 |
Find 45 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATCTGGCTCCGAAAA+TGG | 0.173136 | 8.2:+81575189 | MS.gene39346:CDS |
| TTCCTTCTTTAATCATATTC+TGG | 0.194476 | 8.2:-81575520 | None:intergenic |
| GCAAATGTTGTCGAACATTT+TGG | 0.209865 | 8.2:+81575126 | MS.gene39346:CDS |
| CGTCTCTCCATTTCTTCCTC+TGG | 0.293885 | 8.2:-81575813 | None:intergenic |
| AATGACAAATTTCTTATTGA+TGG | 0.306611 | 8.2:+81575602 | MS.gene39346:CDS |
| TTCGACAACATTTGCACATT+GGG | 0.333869 | 8.2:-81575118 | None:intergenic |
| ACGACAACATTGAAACAATA+AGG | 0.372468 | 8.2:+81575960 | MS.gene39346:CDS |
| CCTACAGTTGTGTTTGTGTT+AGG | 0.377583 | 8.2:+81574456 | MS.gene39346:CDS |
| CCTCTGGGCAATCAAAATAT+AGG | 0.386242 | 8.2:-81575797 | None:intergenic |
| GTCTCTCCATTTCTTCCTCT+GGG | 0.403856 | 8.2:-81575812 | None:intergenic |
| CTGCGAGCGGAAATCAAATC+TGG | 0.406089 | 8.2:+81575177 | MS.gene39346:CDS |
| TGATTGCCCAGAGGAAGAAA+TGG | 0.417731 | 8.2:+81575806 | MS.gene39346:CDS |
| GACTCAAATACCTCCTCAAC+AGG | 0.418858 | 8.2:-81576158 | None:intergenic |
| TGATAATGGTACAGGTGGTC+CGG | 0.428269 | 8.2:+81575080 | MS.gene39346:intron |
| TTCCTTCCGAGGTAACAATT+AGG | 0.429145 | 8.2:+81575549 | MS.gene39346:CDS |
| ATTAATTATTATGATGCAAA+GGG | 0.443787 | 8.2:+81576022 | MS.gene39346:CDS |
| AACAATAAGGAAGCGATTCA+AGG | 0.444129 | 8.2:+81575973 | MS.gene39346:CDS |
| TCAAATCTGGCTCCGAAAAT+GGG | 0.446253 | 8.2:+81575190 | MS.gene39346:CDS |
| GGGTTTACTCACCTCAGTGC+TGG | 0.448432 | 8.2:+81575147 | MS.gene39346:CDS |
| GGTACAGGTGGTCCGGGCAG+TGG | 0.454545 | 8.2:+81575087 | MS.gene39346:intron |
| ATTTATTTGTAGGATACAAA+TGG | 0.459331 | 8.2:+81574414 | MS.gene39346:intron |
| TGGAGAGACGACTTCTTAGT+AGG | 0.467613 | 8.2:+81575826 | MS.gene39346:CDS |
| GGTGGTCCGGGCAGTGGAAA+AGG | 0.473432 | 8.2:+81575093 | MS.gene39346:intron |
| TCAAAATATAGGACAAATGT+TGG | 0.497184 | 8.2:-81575786 | None:intergenic |
| ATCCAGAATATGATTAAAGA+AGG | 0.504467 | 8.2:+81575518 | MS.gene39346:CDS |
| GCATCATAATAATTAATCAC+AGG | 0.514630 | 8.2:-81576016 | None:intergenic |
| GATAATGGTACAGGTGGTCC+GGG | 0.533653 | 8.2:+81575081 | MS.gene39346:intron |
| AGCCTAATTGTTACCTCGGA+AGG | 0.535061 | 8.2:-81575551 | None:intergenic |
| GTTCGACAACATTTGCACAT+TGG | 0.539900 | 8.2:-81575119 | None:intergenic |
| GATTAATTATTATGATGCAA+AGG | 0.546499 | 8.2:+81576021 | MS.gene39346:CDS |
| ATTTGATTTCCGCTCGCAGA+AGG | 0.550406 | 8.2:-81575173 | None:intergenic |
| CAGAAGCCTAATTGTTACCT+CGG | 0.555573 | 8.2:-81575555 | None:intergenic |
| TGTTATTGAAGCTGCAAACA+AGG | 0.570574 | 8.2:+81573761 | MS.gene39346:CDS |
| CCGTGCAGCATTTGAGAGAG+TGG | 0.571248 | 8.2:+81575646 | MS.gene39346:CDS |
| TGCTGGTGACCTTCTGCGAG+CGG | 0.575371 | 8.2:+81575164 | MS.gene39346:CDS |
| CATCATAATAATTAATCACA+GGG | 0.576231 | 8.2:-81576015 | None:intergenic |
| CCTAACACAAACACAACTGT+AGG | 0.576692 | 8.2:-81574456 | None:intergenic |
| TGTTGAGGAGGTATTTGAGT+CGG | 0.603618 | 8.2:+81576160 | MS.gene39346:CDS |
| TGCTGCAAGGCCTGTTGAGG+AGG | 0.615003 | 8.2:+81576148 | MS.gene39346:CDS |
| CCACTCTCTCAAATGCTGCA+CGG | 0.625742 | 8.2:-81575646 | None:intergenic |
| TGATGCTGCAAGGCCTGTTG+AGG | 0.626580 | 8.2:+81576145 | MS.gene39346:CDS |
| TGCAAAGGGAAAAGTTCGCA+AGG | 0.641623 | 8.2:+81576036 | MS.gene39346:CDS |
| ACGACTTCTTAGTAGGAACC+AGG | 0.649336 | 8.2:+81575833 | MS.gene39346:CDS |
| CAACAAGCAATGCAAGACAG+TGG | 0.683184 | 8.2:+81575578 | MS.gene39346:CDS |
| GCAGAAGGTCACCAGCACTG+AGG | 0.757069 | 8.2:-81575158 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATATGATAAAGTAAA+AGG | - | chr8.2:81576478-81576497 | None:intergenic | 10.0% |
| !! | TAAAATATGATAAAGTAAAA+GGG | - | chr8.2:81576477-81576496 | None:intergenic | 10.0% |
| !! | TTAAATTTAAATAAAGATAC+TGG | + | chr8.2:81576637-81576656 | MS.gene39346:intron | 10.0% |
| !!! | AAAATTTTGAAAATGATATT+GGG | + | chr8.2:81576846-81576865 | MS.gene39346:intron | 10.0% |
| !!! | TATAATTCTTTTTTTTTTTG+CGG | - | chr8.2:81574042-81574061 | None:intergenic | 10.0% |
| !! | AAGAATTAAATAATATGGTT+TGG | + | chr8.2:81574132-81574151 | MS.gene39346:intron | 15.0% |
| !! | ATTAATTATTATGATGCAAA+GGG | + | chr8.2:81576022-81576041 | MS.gene39346:CDS | 15.0% |
| !! | TATTGATCTAATAATGATAA+TGG | + | chr8.2:81575066-81575085 | MS.gene39346:intron | 15.0% |
| !! | TCTATAGAATTATAGAATTT+GGG | + | chr8.2:81573899-81573918 | MS.gene39346:intron | 15.0% |
| !! | TGAATTCTATAATTAAACAA+AGG | - | chr8.2:81574271-81574290 | None:intergenic | 15.0% |
| !!! | CAAAATTTTGAAAATGATAT+TGG | + | chr8.2:81576845-81576864 | MS.gene39346:intron | 15.0% |
| !! | AATGACAAATTTCTTATTGA+TGG | + | chr8.2:81575602-81575621 | MS.gene39346:CDS | 20.0% |
| !! | AATTATAATTTCAATGTGCT+TGG | - | chr8.2:81577005-81577024 | None:intergenic | 20.0% |
| !! | AATTTCTATGTATTTATGCT+AGG | + | chr8.2:81575364-81575383 | MS.gene39346:intron | 20.0% |
| !! | ACTATTTCAAAAGAAGAAAA+GGG | - | chr8.2:81575276-81575295 | None:intergenic | 20.0% |
| !! | ATTAAGAACAATATTAACAG+TGG | + | chr8.2:81576551-81576570 | MS.gene39346:intron | 20.0% |
| !! | ATTTATTTGTAGGATACAAA+TGG | + | chr8.2:81574414-81574433 | MS.gene39346:intron | 20.0% |
| !! | CATCATAATAATTAATCACA+GGG | - | chr8.2:81576018-81576037 | None:intergenic | 20.0% |
| !! | CTCTATAGAATTATAGAATT+TGG | + | chr8.2:81573898-81573917 | MS.gene39346:intron | 20.0% |
| !! | GATTAATTATTATGATGCAA+AGG | + | chr8.2:81576021-81576040 | MS.gene39346:CDS | 20.0% |
| !! | GCTTATTTATGTTTATCTTA+AGG | - | chr8.2:81574843-81574862 | None:intergenic | 20.0% |
| !! | TACTATTTCAAAAGAAGAAA+AGG | - | chr8.2:81575277-81575296 | None:intergenic | 20.0% |
| !! | TCAATTCTTCATTTATTTGT+AGG | + | chr8.2:81574404-81574423 | MS.gene39346:intron | 20.0% |
| !! | TTAATCACTTATTTGATTGT+AGG | + | chr8.2:81574334-81574353 | MS.gene39346:intron | 20.0% |
| !! | TTTATTTAAAAACTCATGCA+AGG | - | chr8.2:81576380-81576399 | None:intergenic | 20.0% |
| !! | TTTCTATCAAAGAGAAAATT+TGG | + | chr8.2:81576266-81576285 | MS.gene39346:intron | 20.0% |
| !!! | AATCAGATTTTCAAAAGAAA+CGG | - | chr8.2:81573847-81573866 | None:intergenic | 20.0% |
| !!! | ACTGCTTGTTATAAATAAAT+TGG | - | chr8.2:81574588-81574607 | None:intergenic | 20.0% |
| !!! | ATATAATTTGTACCCATTTT+CGG | - | chr8.2:81575205-81575224 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTACAATGCATTA+TGG | + | chr8.2:81576496-81576515 | MS.gene39346:intron | 20.0% |
| !!! | ATTTTCTCTTTGATAGAAAA+TGG | - | chr8.2:81576265-81576284 | None:intergenic | 20.0% |
| !!! | TCTTCTTTTGAAATAGTAAA+TGG | + | chr8.2:81575279-81575298 | MS.gene39346:intron | 20.0% |
| ! | ACAAGATATTCAACTGATAT+AGG | + | chr8.2:81574678-81574697 | MS.gene39346:intron | 25.0% |
| ! | ATAAATACATTCGCTTTCAA+AGG | - | chr8.2:81574964-81574983 | None:intergenic | 25.0% |
| ! | ATACTGGATATCAATGATAA+AGG | + | chr8.2:81575928-81575947 | MS.gene39346:intron | 25.0% |
| ! | ATCCAGAATATGATTAAAGA+AGG | + | chr8.2:81575518-81575537 | MS.gene39346:CDS | 25.0% |
| ! | ATGTATTGCATAATAGTGTA+GGG | - | chr8.2:81575866-81575885 | None:intergenic | 25.0% |
| ! | ATGTATTTATGCTAGGTTAT+TGG | + | chr8.2:81575371-81575390 | MS.gene39346:intron | 25.0% |
| ! | ATTCAACTGATATAGGTATT+CGG | + | chr8.2:81574685-81574704 | MS.gene39346:intron | 25.0% |
| ! | ATTTGATTGTAGGATACTAA+CGG | + | chr8.2:81574344-81574363 | MS.gene39346:intron | 25.0% |
| ! | CATAAATAGTCAAATGCATT+AGG | - | chr8.2:81574538-81574557 | None:intergenic | 25.0% |
| ! | CCAAATATAAAACTAATTGC+CGG | + | chr8.2:81576683-81576702 | MS.gene39346:intron | 25.0% |
| ! | GCATCATAATAATTAATCAC+AGG | - | chr8.2:81576019-81576038 | None:intergenic | 25.0% |
| ! | TAAATACATTCGCTTTCAAA+GGG | - | chr8.2:81574963-81574982 | None:intergenic | 25.0% |
| ! | TACTGGATATCAATGATAAA+GGG | + | chr8.2:81575929-81575948 | MS.gene39346:intron | 25.0% |
| ! | TATGTATTGCATAATAGTGT+AGG | - | chr8.2:81575867-81575886 | None:intergenic | 25.0% |
| ! | TCAAAATATAGGACAAATGT+TGG | - | chr8.2:81575789-81575808 | None:intergenic | 25.0% |
| ! | TGTATTTATGCTAGGTTATT+GGG | + | chr8.2:81575372-81575391 | MS.gene39346:intron | 25.0% |
| ! | TTCCTTCTTTAATCATATTC+TGG | - | chr8.2:81575523-81575542 | None:intergenic | 25.0% |
| ! | TTTATTGTTGAAGTTGTTTG+TGG | + | chr8.2:81575010-81575029 | MS.gene39346:intron | 25.0% |
| !!! | ATTCAGTATTGATTTCAACT+TGG | + | chr8.2:81574307-81574326 | MS.gene39346:intron | 25.0% |
| !!! | CAACTGTAGGTTTTTTATTT+AGG | - | chr8.2:81574446-81574465 | None:intergenic | 25.0% |
| !!! | GTTTACTTTTTTAGCATCAA+TGG | + | chr8.2:81576919-81576938 | MS.gene39346:intron | 25.0% |
| !!! | GTTTCTTTTGAAAATCTGAT+TGG | + | chr8.2:81573846-81573865 | MS.gene39346:intron | 25.0% |
| !!! | TATTAAGCACTGAAAACATA+AGG | - | chr8.2:81575911-81575930 | None:intergenic | 25.0% |
| !!! | TCTAATAATGATAATGGTAC+AGG | + | chr8.2:81575072-81575091 | MS.gene39346:intron | 25.0% |
| !!! | TGATTTACCTTCTCATTTTT+TGG | - | chr8.2:81576203-81576222 | None:intergenic | 25.0% |
| ACGACAACATTGAAACAATA+AGG | + | chr8.2:81575960-81575979 | MS.gene39346:CDS | 30.0% | |
| ACTGGCATAAACAAATTCAT+TGG | + | chr8.2:81576655-81576674 | MS.gene39346:intron | 30.0% | |
| ACTGTAAGAATTTACAGAAG+CGG | - | chr8.2:81576894-81576913 | None:intergenic | 30.0% | |
| AGTAAGATTAAAACAGCTTG+TGG | + | chr8.2:81574759-81574778 | MS.gene39346:intron | 30.0% | |
| ATTCAAAGGTAAGATGACTA+TGG | - | chr8.2:81574499-81574518 | None:intergenic | 30.0% | |
| ATTGACACAATCTCACTAAT+AGG | - | chr8.2:81574214-81574233 | None:intergenic | 30.0% | |
| ATTTCAACTATGGATGCATT+TGG | - | chr8.2:81574870-81574889 | None:intergenic | 30.0% | |
| CAGGAATTGATGTTTATCTA+TGG | + | chr8.2:81577100-81577119 | MS.gene39346:intron | 30.0% | |
| CATAGATAAACATCAATTCC+TGG | - | chr8.2:81577102-81577121 | None:intergenic | 30.0% | |
| CCAACTGGTATAATTGTATT+CGG | + | chr8.2:81576781-81576800 | MS.gene39346:intron | 30.0% | |
| CTATAAACAATCAGTGAAAC+AGG | - | chr8.2:81575252-81575271 | None:intergenic | 30.0% | |
| GCTATTGCAAACTTAACTTA+AGG | + | chr8.2:81574898-81574917 | MS.gene39346:intron | 30.0% | |
| GTAAGATTAAAACAGCTTGT+GGG | + | chr8.2:81574760-81574779 | MS.gene39346:intron | 30.0% | |
| TAAGTTAAGTTTGCAATAGC+TGG | - | chr8.2:81574898-81574917 | None:intergenic | 30.0% | |
| TGTTTATCTATGGTATTTGC+AGG | + | chr8.2:81577110-81577129 | MS.gene39346:intron | 30.0% | |
| TTTACTAACAGCTCATTCAA+AGG | - | chr8.2:81574513-81574532 | None:intergenic | 30.0% | |
| TTTCAGTCCAAAAAATGAGA+AGG | + | chr8.2:81576193-81576212 | MS.gene39346:CDS | 30.0% | |
| ! | ATGTTTTCAGTGCTTAATAC+TGG | + | chr8.2:81575912-81575931 | MS.gene39346:intron | 30.0% |
| ! | CAAATGTTGTCGAACATTTT+GGG | + | chr8.2:81575127-81575146 | MS.gene39346:CDS | 30.0% |
| ! | GACATTACATTACCTGTTTT+AGG | + | chr8.2:81576121-81576140 | MS.gene39346:intron | 30.0% |
| ! | GTTTTACAATGCATTATGGA+CGG | + | chr8.2:81576500-81576519 | MS.gene39346:intron | 30.0% |
| ! | TCATTGTGCTGTTAAAAATC+AGG | - | chr8.2:81575499-81575518 | None:intergenic | 30.0% |
| ! | TTATGACTTGTCTGACAAAT+TGG | + | chr8.2:81576960-81576979 | MS.gene39346:intron | 30.0% |
| ! | TTTTGTTGGACATTCTATCA+TGG | - | chr8.2:81574100-81574119 | None:intergenic | 30.0% |
| !! | AATAATGATAATGGTACAGG+TGG | + | chr8.2:81575075-81575094 | MS.gene39346:intron | 30.0% |
| !! | TAGTAAATGGCTAGCTTTAT+AGG | + | chr8.2:81575292-81575311 | MS.gene39346:intron | 30.0% |
| !!! | CCGGCAATTAGTTTTATATT+TGG | - | chr8.2:81576686-81576705 | None:intergenic | 30.0% |
| !!! | TGTGTGTGTTTTGTTTTGAA+AGG | - | chr8.2:81574810-81574829 | None:intergenic | 30.0% |
| AACAATAAGGAAGCGATTCA+AGG | + | chr8.2:81575973-81575992 | MS.gene39346:CDS | 35.0% | |
| ACACAATAGAGACAGACAAA+TGG | - | chr8.2:81574991-81575010 | None:intergenic | 35.0% | |
| AGTTGAATATCTTGTCGAGA+GGG | - | chr8.2:81574673-81574692 | None:intergenic | 35.0% | |
| ATGTTGATACACACAAGTCT+AGG | - | chr8.2:81576807-81576826 | None:intergenic | 35.0% | |
| CCGAATACAATTATACCAGT+TGG | - | chr8.2:81576784-81576803 | None:intergenic | 35.0% | |
| CTAATTCCCTAAATGCATCA+TGG | + | chr8.2:81575743-81575762 | MS.gene39346:intron | 35.0% | |
| GAATTATAGAATTTGGGTCC+CGG | + | chr8.2:81573905-81573924 | MS.gene39346:intron | 35.0% | |
| GATGCATTTAGGGAATTAGA+AGG | - | chr8.2:81575742-81575761 | None:intergenic | 35.0% | |
| GCTGGTATACATTTCAACTA+TGG | - | chr8.2:81574880-81574899 | None:intergenic | 35.0% | |
| TCAATTCCTGGAAAACATTG+CGG | - | chr8.2:81577090-81577109 | None:intergenic | 35.0% | |
| TGTTATTGAAGCTGCAAACA+AGG | + | chr8.2:81573761-81573780 | MS.gene39346:CDS | 35.0% | |
| TTCGACAACATTTGCACATT+GGG | - | chr8.2:81575121-81575140 | None:intergenic | 35.0% | |
| TTGGAACTTCCTTAGAATAC+AGG | + | chr8.2:81576979-81576998 | MS.gene39346:intron | 35.0% | |
| ! | ATTTTGTACCTTCCTAGTGT+TGG | - | chr8.2:81576831-81576850 | None:intergenic | 35.0% |
| ! | GCAAATGTTGTCGAACATTT+TGG | + | chr8.2:81575126-81575145 | MS.gene39346:CDS | 35.0% |
| !! | CTACTTTTCTTTGTACCAAC+TGG | + | chr8.2:81576766-81576785 | MS.gene39346:intron | 35.0% |
| !! | CTAGTTCTATAAGCTCTCAT+GGG | + | chr8.2:81574725-81574744 | MS.gene39346:intron | 35.0% |
| !! | TTGTCTTTTCTCAAAAGCAC+AGG | - | chr8.2:81576716-81576735 | None:intergenic | 35.0% |
| AAGCATTATCCCACTAATCG+CGG | - | chr8.2:81574175-81574194 | None:intergenic | 40.0% | |
| ACAAGAAACTCACCAAGACA+TGG | - | chr8.2:81576083-81576102 | None:intergenic | 40.0% | |
| AGGAAAAATTGTTCCTTCCG+AGG | + | chr8.2:81575538-81575557 | MS.gene39346:CDS | 40.0% | |
| ATAGTGTAGGGTCTATTACC+TGG | - | chr8.2:81575854-81575873 | None:intergenic | 40.0% | |
| CAATCAGTGAAACAGGACTA+CGG | - | chr8.2:81575245-81575264 | None:intergenic | 40.0% | |
| CAGAAGCCTAATTGTTACCT+CGG | - | chr8.2:81575558-81575577 | None:intergenic | 40.0% | |
| CAGTTGAATATCTTGTCGAG+AGG | - | chr8.2:81574674-81574693 | None:intergenic | 40.0% | |
| CCTAACACAAACACAACTGT+AGG | - | chr8.2:81574459-81574478 | None:intergenic | 40.0% | |
| CCTACAGTTGTGTTTGTGTT+AGG | + | chr8.2:81574456-81574475 | MS.gene39346:CDS | 40.0% | |
| CCTCTGGGCAATCAAAATAT+AGG | - | chr8.2:81575800-81575819 | None:intergenic | 40.0% | |
| GATAATGCTTGGTTGTGTTG+TGG | + | chr8.2:81574185-81574204 | MS.gene39346:intron | 40.0% | |
| GCAAAGCCATGATGCATTTA+GGG | - | chr8.2:81575752-81575771 | None:intergenic | 40.0% | |
| GGTAGTACATTTATCTGCTC+AGG | - | chr8.2:81575721-81575740 | None:intergenic | 40.0% | |
| GTAATGTCCTTTAGCACATG+AGG | - | chr8.2:81576109-81576128 | None:intergenic | 40.0% | |
| GTTCGACAACATTTGCACAT+TGG | - | chr8.2:81575122-81575141 | None:intergenic | 40.0% | |
| TAATCGCGGTCAGTACTAAT+AGG | - | chr8.2:81574161-81574180 | None:intergenic | 40.0% | |
| TGAGCATAGCTCATTTGGAA+GGG | + | chr8.2:81573928-81573947 | MS.gene39346:intron | 40.0% | |
| TGCAAAGCCATGATGCATTT+AGG | - | chr8.2:81575753-81575772 | None:intergenic | 40.0% | |
| TGTATCAACATGCCAACACT+AGG | + | chr8.2:81576816-81576835 | MS.gene39346:intron | 40.0% | |
| TTCCTTCCGAGGTAACAATT+AGG | + | chr8.2:81575549-81575568 | MS.gene39346:CDS | 40.0% | |
| TTGCAGCATCAACCTAAAAC+AGG | - | chr8.2:81576136-81576155 | None:intergenic | 40.0% | |
| TTGTTTGCCTCATGTGCTAA+AGG | + | chr8.2:81576099-81576118 | MS.gene39346:intron | 40.0% | |
| ! | AGCTGCAAACAAGGTATTCA+TGG | + | chr8.2:81573770-81573789 | MS.gene39346:intron | 40.0% |
| ! | ATCAAATCTGGCTCCGAAAA+TGG | + | chr8.2:81575189-81575208 | MS.gene39346:CDS | 40.0% |
| ! | GAAGCGATTCAAGGTTTTCT+TGG | + | chr8.2:81575982-81576001 | MS.gene39346:CDS | 40.0% |
| ! | GTTGTGTTTCTACCATGTCT+TGG | + | chr8.2:81576068-81576087 | MS.gene39346:intron | 40.0% |
| ! | TCAAATCTGGCTCCGAAAAT+GGG | + | chr8.2:81575190-81575209 | MS.gene39346:CDS | 40.0% |
| ! | TTCAAACCGCAATGTTTTCC+AGG | + | chr8.2:81577081-81577100 | MS.gene39346:intron | 40.0% |
| !! | GCTAGTTCTATAAGCTCTCA+TGG | + | chr8.2:81574724-81574743 | MS.gene39346:intron | 40.0% |
| !! | TGTTGAGGAGGTATTTGAGT+CGG | + | chr8.2:81576160-81576179 | MS.gene39346:CDS | 40.0% |
| !!! | CCTATATTTTGATTGCCCAG+AGG | + | chr8.2:81575797-81575816 | MS.gene39346:CDS | 40.0% |
| !!! | TGTTTTAGGTTGATGCTGCA+AGG | + | chr8.2:81576135-81576154 | MS.gene39346:intron | 40.0% |
| ACGACTTCTTAGTAGGAACC+AGG | + | chr8.2:81575833-81575852 | MS.gene39346:CDS | 45.0% | |
| AGCCTAATTGTTACCTCGGA+AGG | - | chr8.2:81575554-81575573 | None:intergenic | 45.0% | |
| CAACAAGCAATGCAAGACAG+TGG | + | chr8.2:81575578-81575597 | MS.gene39346:CDS | 45.0% | |
| CAATGCTCAGAAGTTGACGT+TGG | - | chr8.2:81575412-81575431 | None:intergenic | 45.0% | |
| CAGCTTAAACTCGATGCAGA+TGG | - | chr8.2:81575446-81575465 | None:intergenic | 45.0% | |
| GACTCAAATACCTCCTCAAC+AGG | - | chr8.2:81576161-81576180 | None:intergenic | 45.0% | |
| GCGATTAGTGGGATAATGCT+TGG | + | chr8.2:81574174-81574193 | MS.gene39346:intron | 45.0% | |
| GGACTACGGATCTATCACTA+AGG | - | chr8.2:81575231-81575250 | None:intergenic | 45.0% | |
| GTCTCTCCATTTCTTCCTCT+GGG | - | chr8.2:81575815-81575834 | None:intergenic | 45.0% | |
| GTGAGCATAGCTCATTTGGA+AGG | + | chr8.2:81573927-81573946 | MS.gene39346:intron | 45.0% | |
| TCAACATGCCAACACTAGGA+AGG | + | chr8.2:81576820-81576839 | MS.gene39346:intron | 45.0% | |
| TCCAAATGAGCTATGCTCAC+CGG | - | chr8.2:81573927-81573946 | None:intergenic | 45.0% | |
| TGATTGCCCAGAGGAAGAAA+TGG | + | chr8.2:81575806-81575825 | MS.gene39346:CDS | 45.0% | |
| TGCAAAGGGAAAAGTTCGCA+AGG | + | chr8.2:81576036-81576055 | MS.gene39346:CDS | 45.0% | |
| TGGAGAGACGACTTCTTAGT+AGG | + | chr8.2:81575826-81575845 | MS.gene39346:CDS | 45.0% | |
| TGTGCTTGGCCTGTATTCTA+AGG | - | chr8.2:81576991-81577010 | None:intergenic | 45.0% | |
| TTTGCGGTCAAATAGCCTAG+TGG | - | chr8.2:81574026-81574045 | None:intergenic | 45.0% | |
| ! | ATTTGATTTCCGCTCGCAGA+AGG | - | chr8.2:81575176-81575195 | None:intergenic | 45.0% |
| ! | TGATGGTTTTCCTCGCAATG+AGG | + | chr8.2:81575619-81575638 | MS.gene39346:CDS | 45.0% |
| !! | TAGTACTGACCGCGATTAGT+GGG | + | chr8.2:81574163-81574182 | MS.gene39346:intron | 45.0% |
| !! | TGATAATGGTACAGGTGGTC+CGG | + | chr8.2:81575080-81575099 | MS.gene39346:intron | 45.0% |
| !! | TTAGTACTGACCGCGATTAG+TGG | + | chr8.2:81574162-81574181 | MS.gene39346:intron | 45.0% |
| !!! | AGCTCTCATGGGAAGCATTT+TGG | + | chr8.2:81574736-81574755 | MS.gene39346:intron | 45.0% |
| !! | AAAAAAAGAATTATATAATT+TGG | + | chr8.2:81574047-81574066 | MS.gene39346:intron | 5.0% |
| !!! | TTTAAAAAAATATTTTTTGT+TGG | - | chr8.2:81574114-81574133 | None:intergenic | 5.0% |
| !!! | TTTTAAAGAATTAAATAATA+TGG | + | chr8.2:81574127-81574146 | MS.gene39346:intron | 5.0% |
| AGCTGAATGAGCGAGGAATC+CGG | - | chr8.2:81573985-81574004 | None:intergenic | 50.0% | |
| CATTGCAGTATGCAGGTGTC+GGG | + | chr8.2:81573951-81573970 | MS.gene39346:intron | 50.0% | |
| CCAAATGAGCTATGCTCACC+GGG | - | chr8.2:81573926-81573945 | None:intergenic | 50.0% | |
| CCACTCTCTCAAATGCTGCA+CGG | - | chr8.2:81575649-81575668 | None:intergenic | 50.0% | |
| CCTCGCTCATTCAGCTTAAG+CGG | + | chr8.2:81573989-81574008 | MS.gene39346:intron | 50.0% | |
| CGTCTCTCCATTTCTTCCTC+TGG | - | chr8.2:81575816-81575835 | None:intergenic | 50.0% | |
| CTCAGAAGTTGACGTTGGTC+AGG | - | chr8.2:81575407-81575426 | None:intergenic | 50.0% | |
| CTGCGAGCGGAAATCAAATC+TGG | + | chr8.2:81575177-81575196 | MS.gene39346:CDS | 50.0% | |
| GCATTGCAGTATGCAGGTGT+CGG | + | chr8.2:81573950-81573969 | MS.gene39346:intron | 50.0% | |
| ! | ATTGCAGTATGCAGGTGTCG+GGG | + | chr8.2:81573952-81573971 | MS.gene39346:intron | 50.0% |
| ! | CAAAAGCACAGGTTGTGAGC+CGG | - | chr8.2:81576705-81576724 | None:intergenic | 50.0% |
| ! | GATAATGGTACAGGTGGTCC+GGG | + | chr8.2:81575081-81575100 | MS.gene39346:intron | 50.0% |
| ! | TGCATCATGGCTTTGCAGAC+TGG | + | chr8.2:81575756-81575775 | MS.gene39346:intron | 50.0% |
| !! | GCGGTGAATTTCTAGCCACT+AGG | + | chr8.2:81574008-81574027 | MS.gene39346:intron | 50.0% |
| CCCGGTGAGCATAGCTCATT+TGG | + | chr8.2:81573923-81573942 | MS.gene39346:intron | 55.0% | |
| CCGCTTAAGCTGAATGAGCG+AGG | - | chr8.2:81573992-81574011 | None:intergenic | 55.0% | |
| CCGTGCAGCATTTGAGAGAG+TGG | + | chr8.2:81575646-81575665 | MS.gene39346:CDS | 55.0% | |
| GCTGAATGAGCGAGGAATCC+GGG | - | chr8.2:81573984-81574003 | None:intergenic | 55.0% | |
| GGGTTTACTCACCTCAGTGC+TGG | + | chr8.2:81575147-81575166 | MS.gene39346:CDS | 55.0% | |
| TGATGCTGCAAGGCCTGTTG+AGG | + | chr8.2:81576145-81576164 | MS.gene39346:CDS | 55.0% | |
| ! | GCACGGTTTTCCTCATTGCG+AGG | - | chr8.2:81575632-81575651 | None:intergenic | 55.0% |
| ! | TGGGTACCTTTTCCACTGCC+CGG | - | chr8.2:81575102-81575121 | None:intergenic | 55.0% |
| !! | GGAAGGGCATTGCAGTATGC+AGG | + | chr8.2:81573944-81573963 | MS.gene39346:intron | 55.0% |
| GCAGAAGGTCACCAGCACTG+AGG | - | chr8.2:81575161-81575180 | None:intergenic | 60.0% | |
| TGCTGCAAGGCCTGTTGAGG+AGG | + | chr8.2:81576148-81576167 | MS.gene39346:CDS | 60.0% | |
| TGCTGGTGACCTTCTGCGAG+CGG | + | chr8.2:81575164-81575183 | MS.gene39346:CDS | 60.0% | |
| GGTGGTCCGGGCAGTGGAAA+AGG | + | chr8.2:81575093-81575112 | MS.gene39346:intron | 65.0% | |
| !! | CAGGTGTCGGGGTTCGAACC+CGG | + | chr8.2:81573963-81573982 | MS.gene39346:intron | 65.0% |
| GGTACAGGTGGTCCGGGCAG+TGG | + | chr8.2:81575087-81575106 | MS.gene39346:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 81573753 | 81577140 | 81573753 | ID=MS.gene39346 |
| chr8.2 | mRNA | 81573753 | 81577140 | 81573753 | ID=MS.gene39346.t1;Parent=MS.gene39346 |
| chr8.2 | exon | 81573753 | 81573782 | 81573753 | ID=MS.gene39346.t1.exon1;Parent=MS.gene39346.t1 |
| chr8.2 | CDS | 81573753 | 81573782 | 81573753 | ID=cds.MS.gene39346.t1;Parent=MS.gene39346.t1 |
| chr8.2 | exon | 81574426 | 81574477 | 81574426 | ID=MS.gene39346.t1.exon2;Parent=MS.gene39346.t1 |
| chr8.2 | CDS | 81574426 | 81574477 | 81574426 | ID=cds.MS.gene39346.t1;Parent=MS.gene39346.t1 |
| chr8.2 | exon | 81575094 | 81575211 | 81575094 | ID=MS.gene39346.t1.exon3;Parent=MS.gene39346.t1 |
| chr8.2 | CDS | 81575094 | 81575211 | 81575094 | ID=cds.MS.gene39346.t1;Parent=MS.gene39346.t1 |
| chr8.2 | exon | 81575511 | 81575667 | 81575511 | ID=MS.gene39346.t1.exon4;Parent=MS.gene39346.t1 |
| chr8.2 | CDS | 81575511 | 81575667 | 81575511 | ID=cds.MS.gene39346.t1;Parent=MS.gene39346.t1 |
| chr8.2 | exon | 81575774 | 81575854 | 81575774 | ID=MS.gene39346.t1.exon5;Parent=MS.gene39346.t1 |
| chr8.2 | CDS | 81575774 | 81575854 | 81575774 | ID=cds.MS.gene39346.t1;Parent=MS.gene39346.t1 |
| chr8.2 | exon | 81575950 | 81576057 | 81575950 | ID=MS.gene39346.t1.exon6;Parent=MS.gene39346.t1 |
| chr8.2 | CDS | 81575950 | 81576057 | 81575950 | ID=cds.MS.gene39346.t1;Parent=MS.gene39346.t1 |
| chr8.2 | exon | 81576143 | 81576214 | 81576143 | ID=MS.gene39346.t1.exon7;Parent=MS.gene39346.t1 |
| chr8.2 | CDS | 81576143 | 81576214 | 81576143 | ID=cds.MS.gene39346.t1;Parent=MS.gene39346.t1 |
| chr8.2 | exon | 81577132 | 81577140 | 81577132 | ID=MS.gene39346.t1.exon8;Parent=MS.gene39346.t1 |
| chr8.2 | CDS | 81577132 | 81577140 | 81577132 | ID=cds.MS.gene39346.t1;Parent=MS.gene39346.t1 |
| Gene Sequence |
| Protein sequence |
