AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39490.t1 MTR_4g088535 85.340 382 40 2 1 382 1 366 0.0 627
MS.gene39490.t1 MTR_8g027395 78.421 380 82 0 6 385 16 395 0.0 615
MS.gene39490.t1 MTR_8g027420 78.684 380 70 1 6 385 5 373 0.0 608
MS.gene39490.t1 MTR_4g088525 80.055 361 72 0 26 386 8 368 0.0 578
MS.gene39490.t1 MTR_3g101010 71.615 384 105 1 7 386 5 388 0.0 530
MS.gene39490.t1 MTR_3g018740 71.354 384 107 2 7 387 5 388 0.0 523
MS.gene39490.t1 MTR_4g045707 68.750 384 118 2 5 386 4 387 0.0 516
MS.gene39490.t1 MTR_3g101030 62.899 407 124 6 5 386 24 428 5.52e-170 482
MS.gene39490.t1 MTR_2g045980 64.858 387 127 3 7 387 5 388 1.30e-167 474
MS.gene39490.t1 MTR_2g046030 64.083 387 130 3 7 387 5 388 2.62e-166 471
MS.gene39490.t1 MTR_8g461160 62.211 389 139 2 5 385 4 392 7.70e-165 467
MS.gene39490.t1 MTR_3g048000 62.113 388 126 4 4 387 22 392 2.91e-164 466
MS.gene39490.t1 MTR_3g101180 62.278 395 135 3 5 385 4 398 3.93e-164 466
MS.gene39490.t1 MTR_3g101130 61.140 386 139 3 7 385 6 387 1.02e-157 449
MS.gene39490.t1 MTR_7g050810 59.843 381 145 2 13 385 22 402 6.86e-157 447
MS.gene39490.t1 MTR_7g050750 59.055 381 148 2 13 385 14 394 9.63e-154 439
MS.gene39490.t1 MTR_7g451890 58.793 381 149 2 13 385 20 400 1.46e-153 439
MS.gene39490.t1 MTR_7g047780 59.318 381 147 2 13 385 20 400 1.38e-152 436
MS.gene39490.t1 MTR_3g101050 59.137 394 130 6 5 387 25 398 2.76e-146 420
MS.gene39490.t1 MTR_3g015620 59.690 387 124 4 7 385 16 378 4.11e-144 414
MS.gene39490.t1 MTR_3g102920 58.947 380 112 6 14 385 65 408 1.69e-138 401
MS.gene39490.t1 MTR_3g101200 55.647 363 130 5 29 385 53 390 1.85e-127 372
MS.gene39490.t1 MTR_3g101190 54.062 357 105 3 29 385 13 310 2.00e-120 351
MS.gene39490.t1 MTR_3g100995 66.142 254 81 3 135 385 11 262 8.24e-116 338
MS.gene39490.t1 MTR_3g018747 66.667 261 69 3 131 387 9 255 2.42e-112 328
MS.gene39490.t1 MTR_3g100010 54.386 342 100 5 6 308 12 336 5.43e-111 328
MS.gene39490.t1 MTR_7g050830 52.548 314 116 3 7 298 16 318 8.13e-103 307
MS.gene39490.t1 MTR_3g015760 57.455 275 109 4 116 385 8 279 2.31e-97 291
MS.gene39490.t1 MTR_3g114310 44.072 388 198 10 12 384 24 407 1.20e-96 295
MS.gene39490.t1 MTR_3g100520 64.352 216 66 4 172 385 1 207 1.12e-87 264
MS.gene39490.t1 MTR_3g101110 58.996 239 64 4 131 361 68 280 5.13e-86 263
MS.gene39490.t1 MTR_3g111160 67.488 203 63 2 187 386 17 219 1.02e-84 257
MS.gene39490.t1 MTR_3g099970 64.286 196 53 2 131 326 20 198 1.31e-82 251
MS.gene39490.t1 MTR_2g046410 61.009 218 76 4 176 387 135 349 8.28e-78 244
MS.gene39490.t1 MTR_3g102870 68.323 161 51 0 194 354 1 161 4.87e-71 220
MS.gene39490.t1 MTR_3g111150 63.584 173 39 2 10 182 2 150 2.93e-68 213
MS.gene39490.t1 MTR_3g101020 55.978 184 52 3 205 385 1 158 1.81e-60 192
MS.gene39490.t1 MTR_3g101150 61.783 157 52 1 237 385 1 157 5.58e-59 189
MS.gene39490.t1 MTR_3g100990 60.000 150 59 1 7 156 5 153 2.61e-49 174
MS.gene39490.t1 MTR_4g093550 66.667 84 28 0 7 90 6 89 4.68e-29 108
MS.gene39490.t1 MTR_6g046890 63.889 72 26 0 15 86 7 78 2.79e-19 84.0
MS.gene39490.t1 MTR_3g101140 54.412 68 26 1 324 386 48 115 6.91e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39490.t1 AT1G47710 52.591 386 176 4 7 385 5 390 1.41e-143 413
MS.gene39490.t1 AT1G47710 52.591 386 176 4 7 385 32 417 7.97e-143 412
MS.gene39490.t1 AT3G45220 47.165 388 193 4 7 384 5 390 1.74e-120 355
MS.gene39490.t1 AT2G25240 51.532 359 163 6 31 384 30 382 3.34e-120 353
MS.gene39490.t1 AT2G26390 48.619 362 172 6 31 384 31 386 8.83e-115 340
MS.gene39490.t1 AT1G64030 42.010 388 194 5 7 384 5 371 1.75e-100 303
MS.gene39490.t1 AT1G62170 41.237 388 196 5 7 384 66 431 2.26e-99 302
MS.gene39490.t1 AT2G14540 43.669 387 187 7 7 384 33 397 1.49e-97 296
MS.gene39490.t1 AT1G62170 38.005 421 196 6 7 384 66 464 5.19e-92 284
MS.gene39490.t1 AT2G35580 40.921 391 196 9 6 384 4 371 3.24e-88 271
MS.gene39490.t1 AT1G64010 44.907 216 95 4 172 384 1 195 2.99e-59 191
MS.gene39490.t1 AT1G64010 44.554 202 88 4 186 384 1 181 3.41e-53 175
MS.gene39490.t1 AT1G62160 40.341 176 84 4 211 384 62 218 8.18e-34 125
MS.gene39490.t1 AT1G63280 51.304 115 52 2 131 243 8 120 4.68e-32 117
MS.gene39490.t1 AT1G51330 55.789 95 42 0 130 224 30 124 5.89e-28 109
MS.gene39490.t1 AT1G64020 35.398 113 70 3 11 121 9 120 2.35e-14 69.7
MS.gene39490.t1 AT2G35555 37.143 105 44 2 251 353 1 85 2.02e-11 61.2

Find 76 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATATGAAAATTTGAATTT+TGG 0.142435 4.2:+22611323 None:intergenic
TGACTAAAGAAGTGAATTTA+TGG 0.193244 4.2:-22611754 MS.gene39490:CDS
AATCGTGTCTCAAGATTATA+AGG 0.307189 4.2:-22613163 MS.gene39490:CDS
CTCAAAGACGCTACTTCTTC+CGG 0.339509 4.2:-22613258 MS.gene39490:CDS
GTCCCGCAAAGAGGATTGTT+TGG 0.348276 4.2:+22611042 None:intergenic
CTTGTCATCCAATCAGGAAA+TGG 0.349930 4.2:+22611617 None:intergenic
TCTCTTTCGTCGACGGTGTT+TGG 0.352738 4.2:-22613224 MS.gene39490:CDS
TTTCGTCGACGGTGTTTGGC+TGG 0.359445 4.2:-22613220 MS.gene39490:CDS
ACCCAAACAATCCTCTTTGC+GGG 0.361274 4.2:-22611044 MS.gene39490:CDS
TCCCGCAAAGAGGATTGTTT+GGG 0.373202 4.2:+22611043 None:intergenic
GGAGTAATCCATTTCCTGAT+TGG 0.397440 4.2:-22611625 MS.gene39490:CDS
TTCTTTGGAGAAAAGATGAT+TGG 0.408590 4.2:+22613443 None:intergenic
TATTTGCTTGTCATCCAATC+AGG 0.409872 4.2:+22611611 None:intergenic
TTTCTTCCAAATGCAAAAGA+TGG 0.417147 4.2:-22611440 MS.gene39490:CDS
CCAACTCGCACTCTATTACT+AGG 0.420097 4.2:+22611359 None:intergenic
TTGAGACACGATTTGTTTGA+AGG 0.423192 4.2:+22613173 None:intergenic
GAAAGAGAGGTGAGGACCAC+CGG 0.426414 4.2:+22613239 None:intergenic
TGAAGGAAGATTGAAGAGAA+AGG 0.431049 4.2:+22613190 None:intergenic
TTTCTCATTTACTTCAATGA+AGG 0.433659 4.2:+22611175 None:intergenic
ACTGTAGCTGCTGCAGCCAG+TGG 0.451974 4.2:-22611149 MS.gene39490:CDS
GAAGGAAGATTGAAGAGAAA+GGG 0.453228 4.2:+22613191 None:intergenic
CGGAAGAAGTAGCGTCTTTG+AGG 0.453365 4.2:+22613259 None:intergenic
GACTAAAGAAGTGAATTTAT+GGG 0.454605 4.2:-22611753 MS.gene39490:CDS
GTCAGCTTTGGTTGAGAAGG+TGG 0.459796 4.2:-22611414 MS.gene39490:CDS
GTGCTCAGCATCATCGCTGC+TGG 0.460796 4.2:-22613378 MS.gene39490:CDS
TCTCGAATGCTGAAGGATCT+AGG 0.461668 4.2:-22611290 MS.gene39490:CDS
TACTAGGAAGCATGTGGTCT+AGG 0.463533 4.2:+22611375 None:intergenic
TGCAGCCAGTGGTGCACTTG+TGG 0.465613 4.2:-22611138 MS.gene39490:CDS
ATCAAGGTTGGTGGTCATGA+AGG 0.471015 4.2:+22611550 None:intergenic
AAGCTCTAATAAACTGATCA+AGG 0.475321 4.2:+22611534 None:intergenic
ATCATCGCTGCTGGCTCTGA+GGG 0.478625 4.2:-22613369 MS.gene39490:CDS
CGATGATGCTGAGCACAACT+TGG 0.481338 4.2:+22613385 None:intergenic
CATGGCCACAAGTGCACCAC+TGG 0.482503 4.2:+22611133 None:intergenic
AACCCAAACAATCCTCTTTG+CGG 0.485811 4.2:-22611045 MS.gene39490:CDS
GATGATCAATGGATTTGAAA+CGG 0.494866 4.2:+22613316 None:intergenic
GTGGCCATGTGTATTCCATC+TGG 0.494909 4.2:-22611119 MS.gene39490:CDS
ATAAAAGAACTTCTTCCTCA+AGG 0.498947 4.2:-22611707 MS.gene39490:CDS
TGCATTAGCAAAGATGAGTC+TGG 0.499282 4.2:+22611667 None:intergenic
GAAGGACTTGTGAAATATGT+TGG 0.499945 4.2:+22611193 None:intergenic
AAAAGATGGTCTGTCAGCTT+TGG 0.500468 4.2:-22611426 MS.gene39490:CDS
TTCATTGAAGTAAATGAGAA+AGG 0.501361 4.2:-22611173 MS.gene39490:CDS
CATCATCGCTGCTGGCTCTG+AGG 0.504339 4.2:-22613370 MS.gene39490:CDS
TCTAATAAACTGATCAAGGT+TGG 0.505126 4.2:+22611538 None:intergenic
GTCAAACCTCCAGAAGAGAA+AGG 0.505347 4.2:+22611257 None:intergenic
CTTCGTCTTCCTTATAAGCA+AGG 0.506335 4.2:-22611494 MS.gene39490:CDS
AAAATGGTGGACTCACTTGA+AGG 0.507736 4.2:-22611233 MS.gene39490:CDS
AGTAATAGAGTGCGAGTTGG+TGG 0.515787 4.2:-22611356 MS.gene39490:CDS
AGAGCAGTTGAGATGATCAA+TGG 0.516141 4.2:+22613305 None:intergenic
TAAAAGAACTTCTTCCTCAA+GGG 0.519561 4.2:-22611706 MS.gene39490:CDS
AGTTCTGATCACTCAGAAAG+AGG 0.528989 4.2:+22611008 None:intergenic
TCTGTAATTAGAAATAAGAA+AGG 0.533188 4.2:+22611074 None:intergenic
TTCTGTTGATTTCAAGAACA+AGG 0.537281 4.2:-22613130 MS.gene39490:intron
GCTATAAAGTCTACTCCAGA+TGG 0.537833 4.2:+22611104 None:intergenic
CCTCACCTCTCTTTCGTCGA+CGG 0.537885 4.2:-22613231 MS.gene39490:CDS
GAAGAAGAACAAACAATGGC+GGG 0.540611 4.2:-22613516 None:intergenic
TGAAACTTCTCGAATGCTGA+AGG 0.558916 4.2:-22611297 MS.gene39490:CDS
TCTGAATGGCAGCTCAGTCA+AGG 0.571104 4.2:-22611576 MS.gene39490:CDS
AATAAACTGATCAAGGTTGG+TGG 0.575387 4.2:+22611541 None:intergenic
TCTGTCAGCTTTGGTTGAGA+AGG 0.577265 4.2:-22611417 MS.gene39490:CDS
CTGTAATTAGAAATAAGAAA+GGG 0.581766 4.2:+22611075 None:intergenic
GAAATATGTTGGAAACTGAA+AGG 0.583772 4.2:+22611204 None:intergenic
TCAAGGTTGGTGGTCATGAA+GGG 0.598587 4.2:+22611551 None:intergenic
TGACTGAGCTGCCATTCAGA+AGG 0.600319 4.2:+22611579 None:intergenic
GAAATCAACAGAAGACAAAG+TGG 0.613498 4.2:+22613140 None:intergenic
TGAGCACTTGTCCCGCAAAG+AGG 0.621340 4.2:+22611033 None:intergenic
AGCACAACTTGGAGAGACAA+TGG 0.636110 4.2:+22613396 None:intergenic
GGAGAAAAGATGATTGGCGA+TGG 0.639138 4.2:+22613449 None:intergenic
AAACACCGTCGACGAAAGAG+AGG 0.644359 4.2:+22613226 None:intergenic
CCTAGTAATAGAGTGCGAGT+TGG 0.649890 4.2:-22611359 MS.gene39490:CDS
TACTCCAGATGGAATACACA+TGG 0.653449 4.2:+22611115 None:intergenic
CTCTATTACTAGGAAGCATG+TGG 0.654298 4.2:+22611369 None:intergenic
AAAGACGCTACTTCTTCCGG+TGG 0.679634 4.2:-22613255 MS.gene39490:CDS
GATCAATGGATTTGAAACGG+AGG 0.687431 4.2:+22613319 None:intergenic
ATAAGCAAGGAAAAGATGAG+CGG 0.694027 4.2:-22611481 MS.gene39490:CDS
CCGTCGACGAAAGAGAGGTG+AGG 0.704618 4.2:+22613231 None:intergenic
AAGTTGTCGACTGACCCTTG+AGG 0.724613 4.2:+22611692 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATAAAATAACCACA+TGG + chr4.2:22611710-22611729 None:intergenic 15.0%
!! AATATATAAAATAACCACAT+GGG + chr4.2:22611709-22611728 None:intergenic 15.0%
!! ATTGTAATTAAAACATAAGT+TGG - chr4.2:22611996-22612015 MS.gene39490:intron 15.0%
!!! CAAAATTCAAATTTTCATAT+GGG - chr4.2:22613195-22613214 MS.gene39490:CDS 15.0%
!!! TAAATTTGACATGATTTTAA+AGG - chr4.2:22612731-22612750 MS.gene39490:intron 15.0%
!! ACTACTAGAAAATCAAAAAA+AGG + chr4.2:22611896-22611915 None:intergenic 20.0%
!! CTACTAGAAAATCAAAAAAA+GGG + chr4.2:22611895-22611914 None:intergenic 20.0%
!! CTGTAATTAGAAATAAGAAA+GGG + chr4.2:22613445-22613464 None:intergenic 20.0%
!! TCTGTAATTAGAAATAAGAA+AGG + chr4.2:22613446-22613465 None:intergenic 20.0%
!! TTTGTTTGTTTGTAAAAACT+CGG - chr4.2:22611565-22611584 MS.gene39490:CDS 20.0%
!!! CCAAAATTCAAATTTTCATA+TGG - chr4.2:22613194-22613213 MS.gene39490:CDS 20.0%
!!! CCATATGAAAATTTGAATTT+TGG + chr4.2:22613197-22613216 None:intergenic 20.0%
! AAAACAATAAGAAGAAGAAG+AGG + chr4.2:22612593-22612612 None:intergenic 25.0%
! AGAAAAGCAAAAATTAGAGA+GGG - chr4.2:22611765-22611784 MS.gene39490:CDS 25.0%
! GAATCCCATCATTTATATAT+GGG - chr4.2:22611598-22611617 MS.gene39490:CDS 25.0%
! GACTAAAGAAGTGAATTTAT+GGG - chr4.2:22612764-22612783 MS.gene39490:intron 25.0%
! GGAAAAAAAAATCTACTTTG+TGG + chr4.2:22612296-22612315 None:intergenic 25.0%
! TAGAAAAGCAAAAATTAGAG+AGG - chr4.2:22611764-22611783 MS.gene39490:CDS 25.0%
! TGAAATGGAAAGATTAAATC+AGG + chr4.2:22612259-22612278 None:intergenic 25.0%
! TGAATCCCATCATTTATATA+TGG - chr4.2:22611597-22611616 MS.gene39490:CDS 25.0%
! TGACTAAAGAAGTGAATTTA+TGG - chr4.2:22612763-22612782 MS.gene39490:intron 25.0%
! TTAGCCCATATATAAATGAT+GGG + chr4.2:22611605-22611624 None:intergenic 25.0%
! TTCATTGAAGTAAATGAGAA+AGG - chr4.2:22613344-22613363 MS.gene39490:CDS 25.0%
! TTTAAACGGTGTTTGATTAA+TGG - chr4.2:22612147-22612166 MS.gene39490:intron 25.0%
! TTTCATGAATAACACATCAA+AGG - chr4.2:22612318-22612337 MS.gene39490:intron 25.0%
! TTTCTCATTTACTTCAATGA+AGG + chr4.2:22613345-22613364 None:intergenic 25.0%
! TTTGATTAATGGTTATACTG+TGG - chr4.2:22612158-22612177 MS.gene39490:intron 25.0%
!! GTGGAAACAAATTTAGAATA+CGG + chr4.2:22612357-22612376 None:intergenic 25.0%
!! TAAATTTGTTTCCACTGTAT+GGG - chr4.2:22612362-22612381 MS.gene39490:intron 25.0%
!! TGATGTGTTATTCATGAAAA+AGG + chr4.2:22612317-22612336 None:intergenic 25.0%
!! TGCAACTAAAGAATTTTTGA+GGG - chr4.2:22611840-22611859 MS.gene39490:intron 25.0%
!! TTCATGCTTAATTTTAAGCT+AGG - chr4.2:22611461-22611480 MS.gene39490:CDS 25.0%
!! TTGCAACTAAAGAATTTTTG+AGG - chr4.2:22611839-22611858 MS.gene39490:intron 25.0%
!!! GCTAATGCATTGTATTTTAA+AGG - chr4.2:22612864-22612883 MS.gene39490:intron 25.0%
AATCGTGTCTCAAGATTATA+AGG - chr4.2:22611354-22611373 MS.gene39490:CDS 30.0%
AGTGTTAGTAATTATACCCT+TGG - chr4.2:22612218-22612237 MS.gene39490:intron 30.0%
ATAAAAGAACTTCTTCCTCA+AGG - chr4.2:22612810-22612829 MS.gene39490:intron 30.0%
CTAGAAAATCAAAAAAAGGG+AGG + chr4.2:22611892-22611911 None:intergenic 30.0%
GAAATATGTTGGAAACTGAA+AGG + chr4.2:22613316-22613335 None:intergenic 30.0%
GATGTTATGCTAACTTGATT+TGG - chr4.2:22612187-22612206 MS.gene39490:intron 30.0%
GTTAGCCCATATATAAATGA+TGG + chr4.2:22611606-22611625 None:intergenic 30.0%
TAAAAGAACTTCTTCCTCAA+GGG - chr4.2:22612811-22612830 MS.gene39490:intron 30.0%
TAGTAATTATACCCTTGGTT+TGG - chr4.2:22612223-22612242 MS.gene39490:intron 30.0%
TATAGCAGTGCTAAATTAGT+TGG + chr4.2:22612623-22612642 None:intergenic 30.0%
TCTAATAAACTGATCAAGGT+TGG + chr4.2:22612982-22613001 None:intergenic 30.0%
TTAGTTGCAACATTTAGTGA+CGG + chr4.2:22611829-22611848 None:intergenic 30.0%
TTTCTTCCAAATGCAAAAGA+TGG - chr4.2:22613077-22613096 MS.gene39490:intron 30.0%
! AAGCTCTAATAAACTGATCA+AGG + chr4.2:22612986-22613005 None:intergenic 30.0%
! AATGGTTATACTGTGGTTTT+TGG - chr4.2:22612165-22612184 MS.gene39490:intron 30.0%
! CAGTTTATTAGAGCTTTTGA+TGG - chr4.2:22612990-22613009 MS.gene39490:intron 30.0%
! CTAAATTTGTTTCCACTGTA+TGG - chr4.2:22612361-22612380 MS.gene39490:intron 30.0%
! GATGATCAATGGATTTGAAA+CGG + chr4.2:22611204-22611223 None:intergenic 30.0%
! GATGTTCTTTTCTGATTCTT+TGG + chr4.2:22611092-22611111 None:intergenic 30.0%
! GCTTAATTTTAAGCTAGGTT+GGG - chr4.2:22611466-22611485 MS.gene39490:CDS 30.0%
! TATGATTTTCACCTTCTGAA+TGG - chr4.2:22612927-22612946 MS.gene39490:intron 30.0%
! TCATCTTTTCCTTGCTTATA+AGG + chr4.2:22613035-22613054 None:intergenic 30.0%
! TGCTTAATTTTAAGCTAGGT+TGG - chr4.2:22611465-22611484 MS.gene39490:CDS 30.0%
! TTCTTTGGAGAAAAGATGAT+TGG + chr4.2:22611077-22611096 None:intergenic 30.0%
!! CATTGTATTTTAAAGGAGCA+TGG - chr4.2:22612871-22612890 MS.gene39490:intron 30.0%
!! TTCTGTTGATTTCAAGAACA+AGG - chr4.2:22611387-22611406 MS.gene39490:CDS 30.0%
!! TTTGCTTTTCTAGTAGAGAT+GGG + chr4.2:22611756-22611775 None:intergenic 30.0%
!! TTTTGCTTTTCTAGTAGAGA+TGG + chr4.2:22611757-22611776 None:intergenic 30.0%
!!! ATCGCAATAATGCCTTTTTT+CGG - chr4.2:22612080-22612099 MS.gene39490:intron 30.0%
!!! CATAAGTTGGTTTTGTGATT+TGG - chr4.2:22612009-22612028 MS.gene39490:intron 30.0%
AATAAACTGATCAAGGTTGG+TGG + chr4.2:22612979-22612998 None:intergenic 35.0%
ATAAGCAAGGAAAAGATGAG+CGG - chr4.2:22613036-22613055 MS.gene39490:intron 35.0%
GAAATCAACAGAAGACAAAG+TGG + chr4.2:22611380-22611399 None:intergenic 35.0%
GAAATTATGAGCCAAACCAA+GGG + chr4.2:22612237-22612256 None:intergenic 35.0%
GAAGGAAGATTGAAGAGAAA+GGG + chr4.2:22611329-22611348 None:intergenic 35.0%
GAAGGACTTGTGAAATATGT+TGG + chr4.2:22613327-22613346 None:intergenic 35.0%
GATATCAGGTTTGAATCCTT+CGG + chr4.2:22611644-22611663 None:intergenic 35.0%
GTTTGTAAAAACTCGGTATC+CGG - chr4.2:22611572-22611591 MS.gene39490:CDS 35.0%
TACTTTGTGGTATACCATCT+AGG + chr4.2:22612283-22612302 None:intergenic 35.0%
TAGAGAGGGAAATTTAGAGA+GGG - chr4.2:22611779-22611798 MS.gene39490:intron 35.0%
TATTTGCTTGTCATCCAATC+AGG + chr4.2:22612909-22612928 None:intergenic 35.0%
TCTTTCCATTTCATCCTAGA+TGG - chr4.2:22612266-22612285 MS.gene39490:intron 35.0%
TGAAATCCTACTAACTCTCT+TGG + chr4.2:22612411-22612430 None:intergenic 35.0%
TGAAGGAAGATTGAAGAGAA+AGG + chr4.2:22611330-22611349 None:intergenic 35.0%
TTAGAGAGGGAAATTTAGAG+AGG - chr4.2:22611778-22611797 MS.gene39490:intron 35.0%
TTCAAACCTGATATCTTGAG+AGG - chr4.2:22611649-22611668 MS.gene39490:CDS 35.0%
TTTGTAAAAACTCGGTATCC+GGG - chr4.2:22611573-22611592 MS.gene39490:CDS 35.0%
! ATAAATGATGGGATTCATCC+CGG + chr4.2:22611594-22611613 None:intergenic 35.0%
! ATTTAGTGACGGAATTAGAG+AGG + chr4.2:22611818-22611837 None:intergenic 35.0%
! ATTTTACCTTTCTCTTCTGG+AGG - chr4.2:22613254-22613273 MS.gene39490:CDS 35.0%
! GTATACCATCTAGGATGAAA+TGG + chr4.2:22612274-22612293 None:intergenic 35.0%
! GTGATTTTACCTTTCTCTTC+TGG - chr4.2:22613251-22613270 MS.gene39490:CDS 35.0%
! TTCTGGAGGTTTGACAAAAA+TGG - chr4.2:22613268-22613287 MS.gene39490:CDS 35.0%
! TTGAGACACGATTTGTTTGA+AGG + chr4.2:22611347-22611366 None:intergenic 35.0%
! TTTAGTGACGGAATTAGAGA+GGG + chr4.2:22611817-22611836 None:intergenic 35.0%
!! GATTTTCTAGTAGTGCATGT+GGG - chr4.2:22611902-22611921 MS.gene39490:intron 35.0%
!! TCTTGCTCTTGGTGTTTAAA+CGG - chr4.2:22612133-22612152 MS.gene39490:intron 35.0%
!! TGATTTTCTAGTAGTGCATG+TGG - chr4.2:22611901-22611920 MS.gene39490:intron 35.0%
AAAAGATGGTCTGTCAGCTT+TGG - chr4.2:22613091-22613110 MS.gene39490:intron 40.0%
AACCCAAACAATCCTCTTTG+CGG - chr4.2:22613472-22613491 MS.gene39490:CDS 40.0%
AACTTGGGCTTAATGGTTCA+AGG - chr4.2:22611495-22611514 MS.gene39490:CDS 40.0%
AATTGACGATGCAACTTTCC+AGG - chr4.2:22612556-22612575 MS.gene39490:intron 40.0%
ACAATCGCACAACCGAAAAA+AGG + chr4.2:22612095-22612114 None:intergenic 40.0%
ACATGGTAATTCCCATACAG+TGG + chr4.2:22612376-22612395 None:intergenic 40.0%
AGAGCAGTTGAGATGATCAA+TGG + chr4.2:22611215-22611234 None:intergenic 40.0%
CCTTCGGTTCCAATTTATGT+GGG + chr4.2:22611628-22611647 None:intergenic 40.0%
CTTCGTCTTCCTTATAAGCA+AGG - chr4.2:22613023-22613042 MS.gene39490:intron 40.0%
CTTGTCATCCAATCAGGAAA+TGG + chr4.2:22612903-22612922 None:intergenic 40.0%
GATCACAAACTTGGGCTTAA+TGG - chr4.2:22611488-22611507 MS.gene39490:CDS 40.0%
GCTATAAAGTCTACTCCAGA+TGG + chr4.2:22613416-22613435 None:intergenic 40.0%
GGAAATTATGAGCCAAACCA+AGG + chr4.2:22612238-22612257 None:intergenic 40.0%
GGAGTAATCCATTTCCTGAT+TGG - chr4.2:22612892-22612911 MS.gene39490:intron 40.0%
GTTAACGCATTTCTTGCTCT+TGG - chr4.2:22612122-22612141 MS.gene39490:intron 40.0%
TACTCCAGATGGAATACACA+TGG + chr4.2:22613405-22613424 None:intergenic 40.0%
TATGGTCCTCTCAAGATATC+AGG + chr4.2:22611658-22611677 None:intergenic 40.0%
TCCTTCGGTTCCAATTTATG+TGG + chr4.2:22611629-22611648 None:intergenic 40.0%
TGAAACTTCTCGAATGCTGA+AGG - chr4.2:22613220-22613239 MS.gene39490:CDS 40.0%
TGCATTAGCAAAGATGAGTC+TGG + chr4.2:22612853-22612872 None:intergenic 40.0%
TGGAGGTTTGACAAAAATGG+TGG - chr4.2:22613271-22613290 MS.gene39490:CDS 40.0%
TGGGCTGAAAAAGAGACAAA+TGG - chr4.2:22612783-22612802 MS.gene39490:intron 40.0%
! ATGGGCTAACCCACATAAAT+TGG - chr4.2:22611616-22611635 MS.gene39490:CDS 40.0%
! CATGTGGGTTATTTGATAGC+GGG - chr4.2:22611917-22611936 MS.gene39490:intron 40.0%
! CTCTATTACTAGGAAGCATG+TGG + chr4.2:22613151-22613170 None:intergenic 40.0%
! GACAGACCATCTTTTGCATT+TGG + chr4.2:22613086-22613105 None:intergenic 40.0%
! GATCAATGGATTTGAAACGG+AGG + chr4.2:22611201-22611220 None:intergenic 40.0%
! GCATGTGGGTTATTTGATAG+CGG - chr4.2:22611916-22611935 MS.gene39490:intron 40.0%
! TAGGTTGGGATCACAAACTT+GGG - chr4.2:22611480-22611499 MS.gene39490:CDS 40.0%
!! AAAATGGTGGACTCACTTGA+AGG - chr4.2:22613284-22613303 MS.gene39490:CDS 40.0%
!! AATAACCACATGGGTTAGAC+TGG + chr4.2:22611700-22611719 None:intergenic 40.0%
ACCCAAACAATCCTCTTTGC+GGG - chr4.2:22613473-22613492 MS.gene39490:CDS 45.0%
AGCACAACTTGGAGAGACAA+TGG + chr4.2:22611124-22611143 None:intergenic 45.0%
ATTTAGTAGCCAACACCACG+AGG - chr4.2:22611726-22611745 MS.gene39490:CDS 45.0%
CCAACTCGCACTCTATTACT+AGG + chr4.2:22613161-22613180 None:intergenic 45.0%
CCCACATAAATTGGAACCGA+AGG - chr4.2:22611625-22611644 MS.gene39490:CDS 45.0%
CCTAGTAATAGAGTGCGAGT+TGG - chr4.2:22613158-22613177 MS.gene39490:CDS 45.0%
CTCAAAGACGCTACTTCTTC+CGG - chr4.2:22611259-22611278 MS.gene39490:CDS 45.0%
GAAGAGGAAGAAAGACTTCC+TGG + chr4.2:22612577-22612596 None:intergenic 45.0%
GCTTCTCCAAGAGAGTTAGT+AGG - chr4.2:22612402-22612421 MS.gene39490:intron 45.0%
GGAGAAAAGATGATTGGCGA+TGG + chr4.2:22611071-22611090 None:intergenic 45.0%
GTCAAACCTCCAGAAGAGAA+AGG + chr4.2:22613263-22613282 None:intergenic 45.0%
TCCCGCAAAGAGGATTGTTT+GGG + chr4.2:22613477-22613496 None:intergenic 45.0%
TCTCGAATGCTGAAGGATCT+AGG - chr4.2:22613227-22613246 MS.gene39490:CDS 45.0%
! AGTAATAGAGTGCGAGTTGG+TGG - chr4.2:22613161-22613180 MS.gene39490:CDS 45.0%
! CTAGGTTGGGATCACAAACT+TGG - chr4.2:22611479-22611498 MS.gene39490:CDS 45.0%
! CTTGGAGAAGCATGTCTACA+TGG + chr4.2:22612393-22612412 None:intergenic 45.0%
! TACTAGGAAGCATGTGGTCT+AGG + chr4.2:22613145-22613164 None:intergenic 45.0%
! TCTGTCAGCTTTGGTTGAGA+AGG - chr4.2:22613100-22613119 MS.gene39490:intron 45.0%
!! ATCAAGGTTGGTGGTCATGA+AGG + chr4.2:22612970-22612989 None:intergenic 45.0%
!! TCAAGGTTGGTGGTCATGAA+GGG + chr4.2:22612969-22612988 None:intergenic 45.0%
AAACACCGTCGACGAAAGAG+AGG + chr4.2:22611294-22611313 None:intergenic 50.0%
AAAGACGCTACTTCTTCCGG+TGG - chr4.2:22611262-22611281 MS.gene39490:CDS 50.0%
CGATGATGCTGAGCACAACT+TGG + chr4.2:22611135-22611154 None:intergenic 50.0%
CGGAAGAAGTAGCGTCTTTG+AGG + chr4.2:22611261-22611280 None:intergenic 50.0%
GGTGTAGGGATCGTGAAGTA+TGG + chr4.2:22611676-22611695 None:intergenic 50.0%
GTCCCGCAAAGAGGATTGTT+TGG + chr4.2:22613478-22613497 None:intergenic 50.0%
GTGGCCATGTGTATTCCATC+TGG - chr4.2:22613398-22613417 MS.gene39490:CDS 50.0%
TCTCTTTCGTCGACGGTGTT+TGG - chr4.2:22611293-22611312 MS.gene39490:CDS 50.0%
TCTGAATGGCAGCTCAGTCA+AGG - chr4.2:22612941-22612960 MS.gene39490:intron 50.0%
TGACTGAGCTGCCATTCAGA+AGG + chr4.2:22612941-22612960 None:intergenic 50.0%
! AAGTTGTCGACTGACCCTTG+AGG + chr4.2:22612828-22612847 None:intergenic 50.0%
! GTCAGCTTTGGTTGAGAAGG+TGG - chr4.2:22613103-22613122 MS.gene39490:intron 50.0%
! TGGGTTAGACTGGTGGTGTA+GGG + chr4.2:22611690-22611709 None:intergenic 50.0%
!! AACCACATGGGTTAGACTGG+TGG + chr4.2:22611697-22611716 None:intergenic 50.0%
!! ATGGGTTAGACTGGTGGTGT+AGG + chr4.2:22611691-22611710 None:intergenic 50.0%
CACCACCAGTCTAACCCATG+TGG - chr4.2:22611692-22611711 MS.gene39490:CDS 55.0%
CCTCACCTCTCTTTCGTCGA+CGG - chr4.2:22611286-22611305 MS.gene39490:CDS 55.0%
GAAAGAGAGGTGAGGACCAC+CGG + chr4.2:22611281-22611300 None:intergenic 55.0%
TGAGCACTTGTCCCGCAAAG+AGG + chr4.2:22613487-22613506 None:intergenic 55.0%
TTTCGTCGACGGTGTTTGGC+TGG - chr4.2:22611297-22611316 MS.gene39490:CDS 55.0%
!! ATCATCGCTGCTGGCTCTGA+GGG - chr4.2:22611148-22611167 MS.gene39490:CDS 55.0%
!! ATGGGTTAGCCTCGTGGTGT+TGG + chr4.2:22611738-22611757 None:intergenic 55.0%
!! GTAGAGATGGGTTAGCCTCG+TGG + chr4.2:22611744-22611763 None:intergenic 55.0%
ACTGTAGCTGCTGCAGCCAG+TGG - chr4.2:22613368-22613387 MS.gene39490:CDS 60.0%
CATGGCCACAAGTGCACCAC+TGG + chr4.2:22613387-22613406 None:intergenic 60.0%
CCGTCGACGAAAGAGAGGTG+AGG + chr4.2:22611289-22611308 None:intergenic 60.0%
GTGCTCAGCATCATCGCTGC+TGG - chr4.2:22611139-22611158 MS.gene39490:CDS 60.0%
TGCAGCCAGTGGTGCACTTG+TGG - chr4.2:22613379-22613398 MS.gene39490:CDS 60.0%
!! CATCATCGCTGCTGGCTCTG+AGG - chr4.2:22611147-22611166 MS.gene39490:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 22611016 22613523 22611016 ID=MS.gene39490
chr4.2 mRNA 22611016 22613523 22611016 ID=MS.gene39490.t1;Parent=MS.gene39490
chr4.2 exon 22613131 22613523 22613131 ID=MS.gene39490.t1.exon1;Parent=MS.gene39490.t1
chr4.2 CDS 22613131 22613523 22613131 ID=cds.MS.gene39490.t1;Parent=MS.gene39490.t1
chr4.2 exon 22611016 22611786 22611016 ID=MS.gene39490.t1.exon2;Parent=MS.gene39490.t1
chr4.2 CDS 22611016 22611786 22611016 ID=cds.MS.gene39490.t1;Parent=MS.gene39490.t1
Gene Sequence

>MS.gene39490

ATGGCGGGTCAGCGTGATGAATCAAGCAGCAAACAAACGAAAGTTTCTCTCACCATCGCCAATCATCTTTTCTCCAAAGAATCAGAAAAGAACATCGTATTTTCGCCATTGTCTCTCCAAGTTGTGCTCAGCATCATCGCTGCTGGCTCTGAGGGTTCAACACAACAACAGCTTCTTGACTTCCTCCGTTTCAAATCCATTGATCATCTCAACTGCTCTGTCTCTCATCTACTTTCTGTCATCCTCAAAGACGCTACTTCTTCCGGTGGTCCTCACCTCTCTTTCGTCGACGGTGTTTGGCTGGAAAAAACCCTTTCTCTTCAATCTTCCTTCAAACAAATCGTGTCTCAAGATTATAAGGCCACTTTGTCTTCTGTTGATTTCAAGAACAAGGTATGCAATTGATTTAGTTTGTATTTGCATTTCATACTATACATGATTATAATTCATGCTTAATTTTAAGCTAGGTTGGGATCACAAACTTGGGCTTAATGGTTCAAGGTTAGCTTAGTTTAGTGTTATGCATTATTAAGTAATGAATTTGATTTTTTTGTTTGTTTGTAAAAACTCGGTATCCGGGATGAATCCCATCATTTATATATGGGCTAACCCACATAAATTGGAACCGAAGGATTCAAACCTGATATCTTGAGAGGACCATACTTCACGATCCCTACACCACCAGTCTAACCCATGTGGTTATTTTATATATTTAGTAGCCAACACCACGAGGCTAACCCATCTCTACTAGAAAAGCAAAAATTAGAGAGGGAAATTTAGAGAGGGAAAACGTGAAATCCCTCTCTAATTCCGTCACTAAATGTTGCAACTAAAGAATTTTTGAGGGATTTTATTTTTTTCGTCATTAATTTTCCTCCCTTTTTTTGATTTTCTAGTAGTGCATGTGGGTTATTTGATAGCGGGATAGATATCATTAGTAGATGTGTTATTGTATGCTTTTGTGAAACAACTTATTGAGAATTGTAATTAAAACATAAGTTGGTTTTGTGATTTGGATCTATCATTTTTGTAGTTAGCTTTGTGTATCATTGTATTATAATTGTATCGCAATAATGCCTTTTTTCGGTTGTGCGATTGTTGTAGTTGTTAACGCATTTCTTGCTCTTGGTGTTTAAACGGTGTTTGATTAATGGTTATACTGTGGTTTTTGGATGTTATGCTAACTTGATTTGGAACTTGCAAGTGTTAGTAATTATACCCTTGGTTTGGCTCATAATTTCCTGATTTAATCTTTCCATTTCATCCTAGATGGTATACCACAAAGTAGATTTTTTTTTCCTTTTTCATGAATAACACATCAAAGGCAGAAATAACTATCCGTATTCTAAATTTGTTTCCACTGTATGGGAATTACCATGTAGACATGCTTCTCCAAGAGAGTTAGTAGGATTTCAGAAGTTACAAATCTGTGTTTATCTAGAAGTGAAATGTGATTATTATTAATATCGTTGTTTCTTTTAACATACAACTATTCGACACAAATTATTTTAGAGTAGCAAGTATCAACTTCTGTGAAAACAATTGACGATGCAACTTTCCAGGAAGTCTTTCTTCCTCTTCTTCTTCTTATTGTTTTCTAGCATCCAACTAATTTAGCACTGCTATATGTGAAAATTAGACTAGCAGAAAGTTGATTTATTCTATTGAAATACTTGTGAAAAGAATTCAACTGATCTATTTGCATAACTGATTTGTAAATTTGACATGATTTTAAAGGCTATTGAAGTGACTAAAGAAGTGAATTTATGGGCTGAAAAAGAGACAAATGGCATTATAAAAGAACTTCTTCCTCAAGGGTCAGTCGACAACTTAACCAGACTCATCTTTGCTAATGCATTGTATTTTAAAGGAGCATGGAGTAATCCATTTCCTGATTGGATGACAAGCAAATATGATTTTCACCTTCTGAATGGCAGCTCAGTCAAGGTTCCCTTCATGACCACCAACCTTGATCAGTTTATTAGAGCTTTTGATGGTTTTAAAGTTCTTCGTCTTCCTTATAAGCAAGGAAAAGATGAGCGGAATTTCTCTATGTACATTTTTCTTCCAAATGCAAAAGATGGTCTGTCAGCTTTGGTTGAGAAGGTGGCTTCTGATTTTGAGCTCCTAGACCACATGCTTCCTAGTAATAGAGTGCGAGTTGGTGGCTTCAAAATTCCAAAATTCAAATTTTCATATGGGCTTGAAACTTCTCGAATGCTGAAGGATCTAGGAGTGATTTTACCTTTCTCTTCTGGAGGTTTGACAAAAATGGTGGACTCACTTGAAGGTCAAAACCTTTCAGTTTCCAACATATTTCACAAGTCCTTCATTGAAGTAAATGAGAAAGGCACTGTAGCTGCTGCAGCCAGTGGTGCACTTGTGGCCATGTGTATTCCATCTGGAGTAGACTTTATAGCTGATCACCCTTTCTTATTTCTAATTACAGAAGATTCAACCCAAACAATCCTCTTTGCGGGACAAGTGCTCAATCCTCTTTCTGAGTGA
Protein sequence

>MS.gene39490.t1

MAGQRDESSSKQTKVSLTIANHLFSKESEKNIVFSPLSLQVVLSIIAAGSEGSTQQQLLDFLRFKSIDHLNCSVSHLLSVILKDATSSGGPHLSFVDGVWLEKTLSLQSSFKQIVSQDYKATLSSVDFKNKAIEVTKEVNLWAEKETNGIIKELLPQGSVDNLTRLIFANALYFKGAWSNPFPDWMTSKYDFHLLNGSSVKVPFMTTNLDQFIRAFDGFKVLRLPYKQGKDERNFSMYIFLPNAKDGLSALVEKVASDFELLDHMLPSNRVRVGGFKIPKFKFSYGLETSRMLKDLGVILPFSSGGLTKMVDSLEGQNLSVSNIFHKSFIEVNEKGTVAAAASGALVAMCIPSGVDFIADHPFLFLITEDSTQTILFAGQVLNPLSE