Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39527.t1 | RHN62344.1 | 83.6 | 519 | 80 | 2 | 1 | 518 | 1 | 515 | 2.60E-141 | 512.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39527.t1 | O23305 | 40.7 | 172 | 93 | 3 | 6 | 177 | 2 | 164 | 1.3e-27 | 125.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39527.t1 | A0A396IDM1 | 83.6 | 519 | 80 | 2 | 1 | 518 | 1 | 515 | 1.9e-141 | 512.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054999 | MS.gene39527 | 0.803644 | 3.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39527.t1 | MTR_8g069140 | 86.538 | 520 | 63 | 4 | 1 | 518 | 1 | 515 | 0.0 | 824 |
| MS.gene39527.t1 | MTR_4g088235 | 86.154 | 520 | 65 | 4 | 1 | 518 | 1 | 515 | 0.0 | 823 |
| MS.gene39527.t1 | MTR_3g092440 | 71.158 | 475 | 72 | 8 | 48 | 518 | 20 | 433 | 0.0 | 591 |
| MS.gene39527.t1 | MTR_4g088240 | 62.319 | 138 | 49 | 3 | 1 | 137 | 1 | 136 | 9.60e-47 | 164 |
| MS.gene39527.t1 | MTR_4g088240 | 72.340 | 94 | 23 | 2 | 423 | 515 | 183 | 274 | 2.65e-33 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39527.t1 | AT4G14490 | 55.238 | 105 | 47 | 0 | 5 | 109 | 1 | 105 | 1.24e-33 | 131 |
| MS.gene39527.t1 | AT3G02400 | 41.627 | 209 | 109 | 7 | 6 | 207 | 2 | 204 | 1.51e-32 | 131 |
| MS.gene39527.t1 | AT3G02400 | 41.148 | 209 | 110 | 7 | 6 | 207 | 2 | 204 | 2.55e-32 | 130 |
Find 147 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTTCAATTCCAGTAAT+TGG | 0.112180 | 4.2:+23080335 | MS.gene39527:CDS |
| TGATTCTGCTGATGTGAATT+TGG | 0.240026 | 4.2:+23080702 | MS.gene39527:CDS |
| GTGGTAAAAGTGTTAAATTT+AGG | 0.256360 | 4.2:+23080560 | MS.gene39527:CDS |
| TGGTAAAAGTGTTAAATTTA+GGG | 0.262471 | 4.2:+23080561 | MS.gene39527:CDS |
| GATTTGGAGAAGATGAATTT+AGG | 0.263231 | 4.2:+23081546 | MS.gene39527:CDS |
| AGGTGAGTGGTTTGATTTCT+TGG | 0.284800 | 4.2:+23081566 | MS.gene39527:CDS |
| CGTTTCCGTAGGGTTACTTT+GGG | 0.293839 | 4.2:-23080497 | None:intergenic |
| GAGAATTGTGATGATGTTAA+AGG | 0.297877 | 4.2:+23081231 | MS.gene39527:CDS |
| CTCGTAACCTTCATCGGTTC+AGG | 0.305130 | 4.2:-23080652 | None:intergenic |
| GAATTTGAGGAATAAGAAAA+TGG | 0.307967 | 4.2:+23080984 | MS.gene39527:CDS |
| GTTTCATCATGTATCAGTTT+TGG | 0.312528 | 4.2:-23081600 | None:intergenic |
| TGAATTGAGTGTTGGAGATT+TGG | 0.322998 | 4.2:+23081014 | MS.gene39527:CDS |
| GGATGAGAATTGGCCTGATT+TGG | 0.337680 | 4.2:+23081530 | MS.gene39527:CDS |
| TGATTCGAGTAATGGGGATT+TGG | 0.337874 | 4.2:+23080906 | MS.gene39527:CDS |
| TGCAGTTGAGATTTGTGATT+CGG | 0.346144 | 4.2:+23080780 | MS.gene39527:CDS |
| ATCTGTGAGAATCCAATTAC+TGG | 0.348786 | 4.2:-23080347 | None:intergenic |
| TCCAATTACTGGAATTGAAA+TGG | 0.350080 | 4.2:-23080336 | None:intergenic |
| ACAAGGAATGCGAAGAATAA+AGG | 0.353579 | 4.2:+23081081 | MS.gene39527:CDS |
| AGGTTTGTGATTCGAGTAAT+GGG | 0.361371 | 4.2:+23080899 | MS.gene39527:CDS |
| TGTTAAAGGAAAGGAGAAAT+TGG | 0.363570 | 4.2:+23081245 | MS.gene39527:CDS |
| AAGTGTTAAATTTAGGGTTC+CGG | 0.384136 | 4.2:+23080567 | MS.gene39527:CDS |
| CAAGGAATGCGAAGAATAAA+GGG | 0.387553 | 4.2:+23081082 | MS.gene39527:CDS |
| GCAGTTGAGATTTGTGATTC+GGG | 0.395223 | 4.2:+23080781 | MS.gene39527:CDS |
| TGGTGGATTCGGGTTTGAAT+AGG | 0.396059 | 4.2:-23080237 | None:intergenic |
| ATTTGAATGGGGATGAGAAT+TGG | 0.396400 | 4.2:+23081520 | MS.gene39527:CDS |
| TCGTCACCAACGCACTCTTC+CGG | 0.397410 | 4.2:-23081363 | None:intergenic |
| AAATTCATCTTCTCCAAATC+AGG | 0.398213 | 4.2:-23081543 | None:intergenic |
| CCATCACCAACACGCTCTTC+TGG | 0.402421 | 4.2:-23081315 | None:intergenic |
| TGGATTCGGGTTTGAATAGG+TGG | 0.412924 | 4.2:-23080234 | None:intergenic |
| TGATTCGGGTAATGGTGATT+TGG | 0.414842 | 4.2:+23080795 | MS.gene39527:CDS |
| CTGAGATGAAAAGGGGTATT+CGG | 0.426172 | 4.2:-23080415 | None:intergenic |
| TCGTTTCCGTAGGGTTACTT+TGG | 0.426738 | 4.2:-23080498 | None:intergenic |
| GAACCATCGCTGAGATGAAA+AGG | 0.432041 | 4.2:-23080424 | None:intergenic |
| AATTTGAGGAATAAGAAAAT+GGG | 0.432307 | 4.2:+23080985 | MS.gene39527:CDS |
| GGAAATACCTGGATCTTTGA+TGG | 0.433151 | 4.2:-23080296 | None:intergenic |
| GAATAAAGGGGTTGTGGTTG+AGG | 0.439491 | 4.2:+23081095 | MS.gene39527:CDS |
| GAAAACAAGGGGTGGTGCTA+AGG | 0.440899 | 4.2:+23081161 | MS.gene39527:CDS |
| GAGATTTGTGATTCGGGTAA+TGG | 0.443798 | 4.2:+23080787 | MS.gene39527:CDS |
| TTGAATGGTGATGATGAATC+TGG | 0.448371 | 4.2:+23080616 | MS.gene39527:CDS |
| CCCGAATCCACCATCAAAAT+CGG | 0.448567 | 4.2:+23080247 | MS.gene39527:CDS |
| GAGGTTTGTGATTCGAGTAA+TGG | 0.452724 | 4.2:+23080898 | MS.gene39527:CDS |
| AGTAGAAGATAAACCTATGA+AGG | 0.453511 | 4.2:+23080522 | MS.gene39527:CDS |
| GGAGATTGTGAAAGAGAAAG+TGG | 0.454752 | 4.2:+23080927 | MS.gene39527:CDS |
| TGAGGGTGACAAGGAATTTG+AGG | 0.455722 | 4.2:+23080971 | MS.gene39527:CDS |
| TAAAGAGAAGGAGAAATTAC+CGG | 0.460915 | 4.2:+23081344 | MS.gene39527:CDS |
| AAAGGGGTATTCGGAGGAAC+AGG | 0.462122 | 4.2:-23080406 | None:intergenic |
| GACGTACTCGCGGAGTCTCT+CGG | 0.467250 | 4.2:-23081655 | None:intergenic |
| GGTTTCTCCCTTACGTGGAC+CGG | 0.470919 | 4.2:-23080212 | None:intergenic |
| GAATAAGAAGAATGCGGTTG+AGG | 0.473229 | 4.2:+23080879 | MS.gene39527:CDS |
| ATTCCTCGCCGGTCCACGTA+AGG | 0.474482 | 4.2:+23080204 | MS.gene39527:CDS |
| CCAGAAGAGCGTGTTGGTGA+TGG | 0.475527 | 4.2:+23081315 | MS.gene39527:CDS |
| GAAGATTTGAGCTTGGTGAA+TGG | 0.484158 | 4.2:+23081117 | MS.gene39527:CDS |
| AAAACAAGGGGTGGTGCTAA+GGG | 0.484261 | 4.2:+23081162 | MS.gene39527:CDS |
| TTACGAGGAATACGCGGAGC+AGG | 0.485036 | 4.2:+23080668 | MS.gene39527:CDS |
| TCTTCTACTATCGTTTCCGT+AGG | 0.497993 | 4.2:-23080508 | None:intergenic |
| TGCGAAGAATAAAGGGGTTG+TGG | 0.500370 | 4.2:+23081089 | MS.gene39527:CDS |
| TTTGGATAGTGTGAAGGAGA+AGG | 0.502619 | 4.2:+23081032 | MS.gene39527:CDS |
| GGATTCGGGTTTGAATAGGT+GGG | 0.504613 | 4.2:-23080233 | None:intergenic |
| AAAACTGATACATGATGAAA+CGG | 0.506563 | 4.2:+23081602 | MS.gene39527:CDS |
| TAGTGTGAAGGAGAAGGTGG+AGG | 0.510047 | 4.2:+23081038 | MS.gene39527:CDS |
| TAAGGGGAAGAAGAAATTGC+AGG | 0.513857 | 4.2:+23081179 | MS.gene39527:CDS |
| GGTATTCGGAGGAACAGGTT+TGG | 0.514934 | 4.2:-23080401 | None:intergenic |
| ATGTATCAGAATCAGAAAGC+TGG | 0.516426 | 4.2:+23081681 | MS.gene39527:CDS |
| ATTGATGAAATTGACGAGGA+TGG | 0.516875 | 4.2:-23080473 | None:intergenic |
| AAGAAGTGAAGAAGAATGTG+AGG | 0.517256 | 4.2:+23080839 | MS.gene39527:CDS |
| CTTGTCATCCTCACACTCCT+CGG | 0.521001 | 4.2:-23081063 | None:intergenic |
| AACAGGTTTGGTGTCTAAAA+CGG | 0.523792 | 4.2:-23080389 | None:intergenic |
| AGTAACTTCACCGATCTTGA+TGG | 0.524256 | 4.2:-23080449 | None:intergenic |
| GAGGAAGAGTGTGTTGGTGA+TGG | 0.527304 | 4.2:+23081267 | MS.gene39527:CDS |
| AGGTGTTTGGTGGAAATACC+TGG | 0.527977 | 4.2:-23080307 | None:intergenic |
| GTATTCCTCGTAACCTTCAT+CGG | 0.528796 | 4.2:-23080658 | None:intergenic |
| AAGTGAAGAAGAAGAATGTG+AGG | 0.531849 | 4.2:+23080953 | MS.gene39527:CDS |
| GAAATACCTGGATCTTTGAT+GGG | 0.532079 | 4.2:-23080295 | None:intergenic |
| CAGGAAGAGATTGTTGGTGA+TGG | 0.532227 | 4.2:+23081198 | MS.gene39527:CDS |
| AACCTCCCCATCAAAGATCC+AGG | 0.532781 | 4.2:+23080289 | MS.gene39527:CDS |
| AGAAGAATGTGAGGGTGACA+AGG | 0.532966 | 4.2:+23080962 | MS.gene39527:CDS |
| AACCATCGCTGAGATGAAAA+GGG | 0.540672 | 4.2:-23080423 | None:intergenic |
| ATCCACCATCAAAATCGGTC+GGG | 0.543736 | 4.2:+23080252 | MS.gene39527:CDS |
| AAATTGCAGGAAGAGATTGT+TGG | 0.543947 | 4.2:+23081192 | MS.gene39527:CDS |
| AGGAATTGAAGTGTGAGAGA+TGG | 0.546456 | 4.2:-23080187 | None:intergenic |
| GATGAAGATGAAATGTTGAA+TGG | 0.547309 | 4.2:+23080601 | MS.gene39527:CDS |
| GGATAGTGTGAAGGAGAAGG+TGG | 0.547962 | 4.2:+23081035 | MS.gene39527:CDS |
| CTTCTACTATCGTTTCCGTA+GGG | 0.549514 | 4.2:-23080507 | None:intergenic |
| ATGGATAGTGAGGTGTTTGG+TGG | 0.549947 | 4.2:-23080317 | None:intergenic |
| TGATGGAGATGATAAAGAAA+AGG | 0.550272 | 4.2:+23081284 | MS.gene39527:CDS |
| CAAGAAAAGTGTGTTGGTGA+TGG | 0.550772 | 4.2:+23081459 | MS.gene39527:CDS |
| GGGGTTTCTGAATTGAGTGT+TGG | 0.552207 | 4.2:+23081006 | MS.gene39527:CDS |
| TGATGAAGAAGATAAAGAGA+AGG | 0.556018 | 4.2:+23081428 | MS.gene39527:CDS |
| GGATCGACCTGAACCGATGA+AGG | 0.556237 | 4.2:+23080645 | MS.gene39527:CDS |
| TGGAGGAGCCGAGGAGTGTG+AGG | 0.560610 | 4.2:+23081055 | MS.gene39527:CDS |
| TACCTGGATCTTTGATGGGG+AGG | 0.560776 | 4.2:-23080291 | None:intergenic |
| TTGTGATGATGTTAAAGGAA+AGG | 0.561010 | 4.2:+23081236 | MS.gene39527:CDS |
| AGGAGAAGGTGGAGGAGCCG+AGG | 0.563651 | 4.2:+23081046 | MS.gene39527:CDS |
| GAGATTGTTGGTGATGGAGA+TGG | 0.565638 | 4.2:+23081204 | MS.gene39527:CDS |
| AGAAGATGAATTTAGGTGAG+TGG | 0.565794 | 4.2:+23081553 | MS.gene39527:CDS |
| TCTTCATCAATACTCTGTAC+CGG | 0.566094 | 4.2:-23080586 | None:intergenic |
| GAAATGGATAGTGAGGTGTT+TGG | 0.570327 | 4.2:-23080320 | None:intergenic |
| TGGTGATTTGGATGATGTGA+AGG | 0.571971 | 4.2:+23080807 | MS.gene39527:CDS |
| CTCACACTTCAATTCCTCGC+CGG | 0.576251 | 4.2:+23080193 | MS.gene39527:CDS |
| AGAAGAATGTGAGGGTGACA+AGG | 0.576462 | 4.2:+23080848 | MS.gene39527:CDS |
| AAGTGTGTTGGTGATGGAGA+TGG | 0.577597 | 4.2:+23081465 | MS.gene39527:CDS |
| ATTTGAGGAATAAGAAAATG+GGG | 0.577941 | 4.2:+23080986 | MS.gene39527:CDS |
| TAAAGGAAAGGAGAAATTGG+AGG | 0.582074 | 4.2:+23081248 | MS.gene39527:CDS |
| GGTTGAGGAAGATTTGAGCT+TGG | 0.583457 | 4.2:+23081110 | MS.gene39527:CDS |
| CGAGGAGTGTGAGGATGACA+AGG | 0.584161 | 4.2:+23081064 | MS.gene39527:CDS |
| CGAAGAATGTGAGGGTGACG+AGG | 0.585927 | 4.2:+23080737 | MS.gene39527:CDS |
| AGAAGTGAAGAAGAATGTGA+GGG | 0.586693 | 4.2:+23080840 | MS.gene39527:CDS |
| AGGTGGGTTTCTCCCTTACG+TGG | 0.589154 | 4.2:-23080217 | None:intergenic |
| GATGGTTCCACCATCAAGAT+CGG | 0.590964 | 4.2:+23080439 | MS.gene39527:CDS |
| AAATCACAAGAAAAGTGTGT+TGG | 0.591822 | 4.2:+23081453 | MS.gene39527:CDS |
| TGATGGAGACGATAAAGAGA+AGG | 0.597408 | 4.2:+23081332 | MS.gene39527:CDS |
| TTCCTCGCCGGTCCACGTAA+GGG | 0.599574 | 4.2:+23080205 | MS.gene39527:CDS |
| TGGAGATTTGGATAGTGTGA+AGG | 0.601874 | 4.2:+23081026 | MS.gene39527:CDS |
| GATTGTGAAAGAGAAAGTGG+AGG | 0.601927 | 4.2:+23080930 | MS.gene39527:CDS |
| TTTGAGCTTGGTGAATGGAG+TGG | 0.602709 | 4.2:+23081122 | MS.gene39527:CDS |
| AATTTACCAGAAGAGCGTGT+TGG | 0.606294 | 4.2:+23081309 | MS.gene39527:CDS |
| CTCCCTTACGTGGACCGGCG+AGG | 0.606537 | 4.2:-23080207 | None:intergenic |
| ACAGATCTCGATTCTTCTAA+CGG | 0.609144 | 4.2:+23080364 | MS.gene39527:CDS |
| AAATTACCGGAAGAGTGCGT+TGG | 0.609976 | 4.2:+23081357 | MS.gene39527:CDS |
| AATCCACCATCAAAATCGGT+CGG | 0.610443 | 4.2:+23080251 | MS.gene39527:CDS |
| GGTTTGTGATTCGAGTAATG+GGG | 0.612127 | 4.2:+23080900 | MS.gene39527:CDS |
| TAAAATGGAAGAACAACAAG+TGG | 0.617661 | 4.2:+23080162 | None:intergenic |
| GTAGAAGATAAACCTATGAA+GGG | 0.620399 | 4.2:+23080523 | MS.gene39527:CDS |
| TTTGAGGAATAAGAAAATGG+GGG | 0.622895 | 4.2:+23080987 | MS.gene39527:CDS |
| AAACAAGGGGTGGTGCTAAG+GGG | 0.623711 | 4.2:+23081163 | MS.gene39527:CDS |
| AACTTCACCGATCTTGATGG+TGG | 0.623905 | 4.2:-23080446 | None:intergenic |
| CAATCCCCAAAGTAACCCTA+CGG | 0.625349 | 4.2:+23080492 | MS.gene39527:CDS |
| TGGAATTGAAATGGATAGTG+AGG | 0.627666 | 4.2:-23080327 | None:intergenic |
| TTTGGATGATGTGAAGGAGA+AGG | 0.628490 | 4.2:+23080813 | MS.gene39527:CDS |
| GTTTCCGTAGGGTTACTTTG+GGG | 0.630023 | 4.2:-23080496 | None:intergenic |
| CTGAACCGATGAAGGTTACG+AGG | 0.630587 | 4.2:+23080653 | MS.gene39527:CDS |
| TGATGGGGAGGTTGTTGCCG+CGG | 0.633183 | 4.2:-23080279 | None:intergenic |
| TGATGATGAATCTGGAATTG+TGG | 0.633719 | 4.2:+23080624 | MS.gene39527:CDS |
| AGTGAAGAAGAAGAATGTGA+GGG | 0.634672 | 4.2:+23080954 | MS.gene39527:CDS |
| CTGTAGTATCGAAGAATGTG+AGG | 0.646172 | 4.2:+23080728 | MS.gene39527:CDS |
| CTACATATACTAGCATTCAG+TGG | 0.652902 | 4.2:-23081709 | None:intergenic |
| TGAAGGTTACGAGGAATACG+CGG | 0.654682 | 4.2:+23080662 | MS.gene39527:CDS |
| AAAATCGGTCGGGTCATCCG+CGG | 0.657840 | 4.2:+23080262 | MS.gene39527:CDS |
| AGATGAAAAGGGGTATTCGG+AGG | 0.674232 | 4.2:-23080412 | None:intergenic |
| AAATACCTGGATCTTTGATG+GGG | 0.678030 | 4.2:-23080294 | None:intergenic |
| ACCATCGCTGAGATGAAAAG+GGG | 0.686692 | 4.2:-23080422 | None:intergenic |
| TTCGAAGAATAAGAAGAATG+CGG | 0.691627 | 4.2:+23080873 | MS.gene39527:CDS |
| GGGGATTGATGAAATTGACG+AGG | 0.705490 | 4.2:-23080477 | None:intergenic |
| AAGGAATGCGAAGAATAAAG+GGG | 0.713160 | 4.2:+23081083 | MS.gene39527:CDS |
| AAATTGGAGGAAGAGTGTGT+TGG | 0.722760 | 4.2:+23081261 | MS.gene39527:CDS |
| GATACATTATGACGTACTCG+CGG | 0.753024 | 4.2:-23081665 | None:intergenic |
| TGTAGTATCGAAGAATGTGA+GGG | 0.756754 | 4.2:+23080729 | MS.gene39527:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAAGAGAATTTGAA+TGG | + | chr4.2:23081507-23081526 | MS.gene39527:CDS | 20.0% |
| !! | AAGAAAAAGAGAATTTGAAT+GGG | + | chr4.2:23081508-23081527 | MS.gene39527:CDS | 20.0% |
| !! | AATTTGAGGAATAAGAAAAT+GGG | + | chr4.2:23080985-23081004 | MS.gene39527:CDS | 20.0% |
| !! | TAAAGAAAAAGAGAAATTAC+AGG | + | chr4.2:23081392-23081411 | MS.gene39527:CDS | 20.0% |
| !!! | TGGTAAAAGTGTTAAATTTA+GGG | + | chr4.2:23080561-23080580 | MS.gene39527:CDS | 20.0% |
| ! | AAAACTGATACATGATGAAA+CGG | + | chr4.2:23081602-23081621 | MS.gene39527:CDS | 25.0% |
| ! | AGAAAAAGAGAATTTGAATG+GGG | + | chr4.2:23081509-23081528 | MS.gene39527:CDS | 25.0% |
| ! | ATGTTGAGAAAAAGAAAACA+AGG | + | chr4.2:23081148-23081167 | MS.gene39527:CDS | 25.0% |
| ! | ATTTGAGGAATAAGAAAATG+GGG | + | chr4.2:23080986-23081005 | MS.gene39527:CDS | 25.0% |
| ! | GAATTTGAGGAATAAGAAAA+TGG | + | chr4.2:23080984-23081003 | MS.gene39527:CDS | 25.0% |
| ! | TGTTGAGAAAAAGAAAACAA+GGG | + | chr4.2:23081149-23081168 | MS.gene39527:CDS | 25.0% |
| !!! | GTGGTAAAAGTGTTAAATTT+AGG | + | chr4.2:23080560-23080579 | MS.gene39527:CDS | 25.0% |
| AAACCTATGAAGGGTAAAAA+AGG | + | chr4.2:23080532-23080551 | MS.gene39527:CDS | 30.0% | |
| AAATTCATCTTCTCCAAATC+AGG | - | chr4.2:23081546-23081565 | None:intergenic | 30.0% | |
| AAGGGTAAAAAAGGTTATAG+TGG | + | chr4.2:23080541-23080560 | MS.gene39527:CDS | 30.0% | |
| AGTAGAAGATAAACCTATGA+AGG | + | chr4.2:23080522-23080541 | MS.gene39527:CDS | 30.0% | |
| GATGAAGATGAAATGTTGAA+TGG | + | chr4.2:23080601-23080620 | MS.gene39527:CDS | 30.0% | |
| GATTTGGAGAAGATGAATTT+AGG | + | chr4.2:23081546-23081565 | MS.gene39527:CDS | 30.0% | |
| GTAGAAGATAAACCTATGAA+GGG | + | chr4.2:23080523-23080542 | MS.gene39527:CDS | 30.0% | |
| GTTGAGAAAAAGAAAACAAG+GGG | + | chr4.2:23081150-23081169 | MS.gene39527:CDS | 30.0% | |
| TAAAGAGAAGGAGAAATTAC+CGG | + | chr4.2:23081344-23081363 | MS.gene39527:CDS | 30.0% | |
| TCCAATTACTGGAATTGAAA+TGG | - | chr4.2:23080339-23080358 | None:intergenic | 30.0% | |
| TCCATTTCAATTCCAGTAAT+TGG | + | chr4.2:23080335-23080354 | MS.gene39527:CDS | 30.0% | |
| TGATGAAGAAGATAAAGAGA+AGG | + | chr4.2:23081428-23081447 | MS.gene39527:CDS | 30.0% | |
| TGATGGAGATGATAAAGAAA+AGG | + | chr4.2:23081284-23081303 | MS.gene39527:CDS | 30.0% | |
| TGTTAAAGGAAAGGAGAAAT+TGG | + | chr4.2:23081245-23081264 | MS.gene39527:CDS | 30.0% | |
| TTCGAAGAATAAGAAGAATG+CGG | + | chr4.2:23080873-23080892 | MS.gene39527:CDS | 30.0% | |
| TTTGAGGAATAAGAAAATGG+GGG | + | chr4.2:23080987-23081006 | MS.gene39527:CDS | 30.0% | |
| ! | AAATCACAAGAAAAGTGTGT+TGG | + | chr4.2:23081453-23081472 | MS.gene39527:CDS | 30.0% |
| ! | AAGTGTTAAATTTAGGGTTC+CGG | + | chr4.2:23080567-23080586 | MS.gene39527:CDS | 30.0% |
| ! | GAGAATTGTGATGATGTTAA+AGG | + | chr4.2:23081231-23081250 | MS.gene39527:CDS | 30.0% |
| ! | GTTTCATCATGTATCAGTTT+TGG | - | chr4.2:23081603-23081622 | None:intergenic | 30.0% |
| ! | TTGTGATGATGTTAAAGGAA+AGG | + | chr4.2:23081236-23081255 | MS.gene39527:CDS | 30.0% |
| !!! | TAACCTTTTTTACCCTTCAT+AGG | - | chr4.2:23080538-23080557 | None:intergenic | 30.0% |
| AAATACCTGGATCTTTGATG+GGG | - | chr4.2:23080297-23080316 | None:intergenic | 35.0% | |
| AAATTGCAGGAAGAGATTGT+TGG | + | chr4.2:23081192-23081211 | MS.gene39527:CDS | 35.0% | |
| AAGAAGTGAAGAAGAATGTG+AGG | + | chr4.2:23080839-23080858 | MS.gene39527:CDS | 35.0% | |
| AAGGAATGCGAAGAATAAAG+GGG | + | chr4.2:23081083-23081102 | MS.gene39527:CDS | 35.0% | |
| AAGTGAAGAAGAAGAATGTG+AGG | + | chr4.2:23080953-23080972 | MS.gene39527:CDS | 35.0% | |
| ACAAGGAATGCGAAGAATAA+AGG | + | chr4.2:23081081-23081100 | MS.gene39527:CDS | 35.0% | |
| ACAGATCTCGATTCTTCTAA+CGG | + | chr4.2:23080364-23080383 | MS.gene39527:CDS | 35.0% | |
| AGAAGATGAATTTAGGTGAG+TGG | + | chr4.2:23081553-23081572 | MS.gene39527:CDS | 35.0% | |
| AGAAGTGAAGAAGAATGTGA+GGG | + | chr4.2:23080840-23080859 | MS.gene39527:CDS | 35.0% | |
| AGGTTTGTGATTCGAGTAAT+GGG | + | chr4.2:23080899-23080918 | MS.gene39527:CDS | 35.0% | |
| AGTGAAGAAGAAGAATGTGA+GGG | + | chr4.2:23080954-23080973 | MS.gene39527:CDS | 35.0% | |
| ATCTGTGAGAATCCAATTAC+TGG | - | chr4.2:23080350-23080369 | None:intergenic | 35.0% | |
| ATGTATCAGAATCAGAAAGC+TGG | + | chr4.2:23081681-23081700 | MS.gene39527:CDS | 35.0% | |
| ATTGATGAAATTGACGAGGA+TGG | - | chr4.2:23080476-23080495 | None:intergenic | 35.0% | |
| ATTTGAATGGGGATGAGAAT+TGG | + | chr4.2:23081520-23081539 | MS.gene39527:CDS | 35.0% | |
| CAAGGAATGCGAAGAATAAA+GGG | + | chr4.2:23081082-23081101 | MS.gene39527:CDS | 35.0% | |
| GAAATACCTGGATCTTTGAT+GGG | - | chr4.2:23080298-23080317 | None:intergenic | 35.0% | |
| TAAAGGAAAGGAGAAATTGG+AGG | + | chr4.2:23081248-23081267 | MS.gene39527:CDS | 35.0% | |
| TCTTCATCAATACTCTGTAC+CGG | - | chr4.2:23080589-23080608 | None:intergenic | 35.0% | |
| TGATTCTGCTGATGTGAATT+TGG | + | chr4.2:23080702-23080721 | MS.gene39527:CDS | 35.0% | |
| TGCAGTTGAGATTTGTGATT+CGG | + | chr4.2:23080780-23080799 | MS.gene39527:CDS | 35.0% | |
| TGGAATTGAAATGGATAGTG+AGG | - | chr4.2:23080330-23080349 | None:intergenic | 35.0% | |
| ! | TGATGATGAATCTGGAATTG+TGG | + | chr4.2:23080624-23080643 | MS.gene39527:CDS | 35.0% |
| ! | TGTAGTATCGAAGAATGTGA+GGG | + | chr4.2:23080729-23080748 | MS.gene39527:CDS | 35.0% |
| ! | TTGAATGGTGATGATGAATC+TGG | + | chr4.2:23080616-23080635 | MS.gene39527:CDS | 35.0% |
| !! | AACAGGTTTGGTGTCTAAAA+CGG | - | chr4.2:23080392-23080411 | None:intergenic | 35.0% |
| !! | TGAATTGAGTGTTGGAGATT+TGG | + | chr4.2:23081014-23081033 | MS.gene39527:CDS | 35.0% |
| AACCATCGCTGAGATGAAAA+GGG | - | chr4.2:23080426-23080445 | None:intergenic | 40.0% | |
| AATCCACCATCAAAATCGGT+CGG | + | chr4.2:23080251-23080270 | MS.gene39527:CDS | 40.0% | |
| AGGAATTGAAGTGTGAGAGA+TGG | - | chr4.2:23080190-23080209 | None:intergenic | 40.0% | |
| AGTAACTTCACCGATCTTGA+TGG | - | chr4.2:23080452-23080471 | None:intergenic | 40.0% | |
| CTTCTACTATCGTTTCCGTA+GGG | - | chr4.2:23080510-23080529 | None:intergenic | 40.0% | |
| GAATAAGAAGAATGCGGTTG+AGG | + | chr4.2:23080879-23080898 | MS.gene39527:CDS | 40.0% | |
| GAGAAAAAGAAAACAAGGGG+TGG | + | chr4.2:23081153-23081172 | MS.gene39527:CDS | 40.0% | |
| GAGGTTTGTGATTCGAGTAA+TGG | + | chr4.2:23080898-23080917 | MS.gene39527:CDS | 40.0% | |
| GATACATTATGACGTACTCG+CGG | - | chr4.2:23081668-23081687 | None:intergenic | 40.0% | |
| GATTGTGAAAGAGAAAGTGG+AGG | + | chr4.2:23080930-23080949 | MS.gene39527:CDS | 40.0% | |
| GCAGTTGAGATTTGTGATTC+GGG | + | chr4.2:23080781-23080800 | MS.gene39527:CDS | 40.0% | |
| GGAAATACCTGGATCTTTGA+TGG | - | chr4.2:23080299-23080318 | None:intergenic | 40.0% | |
| GGAGATTGTGAAAGAGAAAG+TGG | + | chr4.2:23080927-23080946 | MS.gene39527:CDS | 40.0% | |
| GGTTTGTGATTCGAGTAATG+GGG | + | chr4.2:23080900-23080919 | MS.gene39527:CDS | 40.0% | |
| GTATTCCTCGTAACCTTCAT+CGG | - | chr4.2:23080661-23080680 | None:intergenic | 40.0% | |
| TAAGGGGAAGAAGAAATTGC+AGG | + | chr4.2:23081179-23081198 | MS.gene39527:CDS | 40.0% | |
| TCTTCTACTATCGTTTCCGT+AGG | - | chr4.2:23080511-23080530 | None:intergenic | 40.0% | |
| TGATGGAGACGATAAAGAGA+AGG | + | chr4.2:23081332-23081351 | MS.gene39527:CDS | 40.0% | |
| TGGAGATTTGGATAGTGTGA+AGG | + | chr4.2:23081026-23081045 | MS.gene39527:CDS | 40.0% | |
| TTTGGATAGTGTGAAGGAGA+AGG | + | chr4.2:23081032-23081051 | MS.gene39527:CDS | 40.0% | |
| TTTGGATGATGTGAAGGAGA+AGG | + | chr4.2:23080813-23080832 | MS.gene39527:CDS | 40.0% | |
| ! | AAATTGGAGGAAGAGTGTGT+TGG | + | chr4.2:23081261-23081280 | MS.gene39527:CDS | 40.0% |
| ! | AATTTACCAGAAGAGCGTGT+TGG | + | chr4.2:23081309-23081328 | MS.gene39527:CDS | 40.0% |
| ! | AGGTGAGTGGTTTGATTTCT+TGG | + | chr4.2:23081566-23081585 | MS.gene39527:CDS | 40.0% |
| ! | CAAGAAAAGTGTGTTGGTGA+TGG | + | chr4.2:23081459-23081478 | MS.gene39527:CDS | 40.0% |
| ! | CTGTAGTATCGAAGAATGTG+AGG | + | chr4.2:23080728-23080747 | MS.gene39527:CDS | 40.0% |
| ! | GAAATGGATAGTGAGGTGTT+TGG | - | chr4.2:23080323-23080342 | None:intergenic | 40.0% |
| ! | GAAGATTTGAGCTTGGTGAA+TGG | + | chr4.2:23081117-23081136 | MS.gene39527:CDS | 40.0% |
| ! | GAGATTTGTGATTCGGGTAA+TGG | + | chr4.2:23080787-23080806 | MS.gene39527:CDS | 40.0% |
| ! | TGATTCGAGTAATGGGGATT+TGG | + | chr4.2:23080906-23080925 | MS.gene39527:CDS | 40.0% |
| ! | TGATTCGGGTAATGGTGATT+TGG | + | chr4.2:23080795-23080814 | MS.gene39527:CDS | 40.0% |
| ! | TGGTGATTTGGATGATGTGA+AGG | + | chr4.2:23080807-23080826 | MS.gene39527:CDS | 40.0% |
| !! | CTGAGATGAAAAGGGGTATT+CGG | - | chr4.2:23080418-23080437 | None:intergenic | 40.0% |
| !!! | ACCGATTTTGATGGTGGATT+CGG | - | chr4.2:23080251-23080270 | None:intergenic | 40.0% |
| AACTTCACCGATCTTGATGG+TGG | - | chr4.2:23080449-23080468 | None:intergenic | 45.0% | |
| ACCATCGCTGAGATGAAAAG+GGG | - | chr4.2:23080425-23080444 | None:intergenic | 45.0% | |
| AGAAGAATGTGAGGGTGACA+AGG | + | chr4.2:23080848-23080867 | MS.gene39527:CDS | 45.0% | |
| ATCCACCATCAAAATCGGTC+GGG | + | chr4.2:23080252-23080271 | MS.gene39527:CDS | 45.0% | |
| CAATCCCCAAAGTAACCCTA+CGG | + | chr4.2:23080492-23080511 | MS.gene39527:CDS | 45.0% | |
| CCCGAATCCACCATCAAAAT+CGG | + | chr4.2:23080247-23080266 | MS.gene39527:CDS | 45.0% | |
| GAACCATCGCTGAGATGAAA+AGG | - | chr4.2:23080427-23080446 | None:intergenic | 45.0% | |
| GAATAAAGGGGTTGTGGTTG+AGG | + | chr4.2:23081095-23081114 | MS.gene39527:CDS | 45.0% | |
| GATGGTTCCACCATCAAGAT+CGG | + | chr4.2:23080439-23080458 | MS.gene39527:CDS | 45.0% | |
| GGGGATTGATGAAATTGACG+AGG | - | chr4.2:23080480-23080499 | None:intergenic | 45.0% | |
| GGGGTTTCTGAATTGAGTGT+TGG | + | chr4.2:23081006-23081025 | MS.gene39527:CDS | 45.0% | |
| GGTTGAGGAAGATTTGAGCT+TGG | + | chr4.2:23081110-23081129 | MS.gene39527:CDS | 45.0% | |
| TCGTTTCCGTAGGGTTACTT+TGG | - | chr4.2:23080501-23080520 | None:intergenic | 45.0% | |
| TGAAGGTTACGAGGAATACG+CGG | + | chr4.2:23080662-23080681 | MS.gene39527:CDS | 45.0% | |
| TGAGGGTGACAAGGAATTTG+AGG | + | chr4.2:23080971-23080990 | MS.gene39527:CDS | 45.0% | |
| TGCGAAGAATAAAGGGGTTG+TGG | + | chr4.2:23081089-23081108 | MS.gene39527:CDS | 45.0% | |
| ! | AAAACAAGGGGTGGTGCTAA+GGG | + | chr4.2:23081162-23081181 | MS.gene39527:CDS | 45.0% |
| ! | AAATTACCGGAAGAGTGCGT+TGG | + | chr4.2:23081357-23081376 | MS.gene39527:CDS | 45.0% |
| ! | AGGTGTTTGGTGGAAATACC+TGG | - | chr4.2:23080310-23080329 | None:intergenic | 45.0% |
| ! | ATGGATAGTGAGGTGTTTGG+TGG | - | chr4.2:23080320-23080339 | None:intergenic | 45.0% |
| ! | CAGGAAGAGATTGTTGGTGA+TGG | + | chr4.2:23081198-23081217 | MS.gene39527:CDS | 45.0% |
| ! | CGTTTCCGTAGGGTTACTTT+GGG | - | chr4.2:23080500-23080519 | None:intergenic | 45.0% |
| ! | GGATGAGAATTGGCCTGATT+TGG | + | chr4.2:23081530-23081549 | MS.gene39527:CDS | 45.0% |
| ! | GGATTCGGGTTTGAATAGGT+GGG | - | chr4.2:23080236-23080255 | None:intergenic | 45.0% |
| ! | GTTTCCGTAGGGTTACTTTG+GGG | - | chr4.2:23080499-23080518 | None:intergenic | 45.0% |
| ! | TCTCTCGGCTTTTTGTCTCA+TGG | - | chr4.2:23081643-23081662 | None:intergenic | 45.0% |
| ! | TGGATTCGGGTTTGAATAGG+TGG | - | chr4.2:23080237-23080256 | None:intergenic | 45.0% |
| ! | TTTGAGCTTGGTGAATGGAG+TGG | + | chr4.2:23081122-23081141 | MS.gene39527:CDS | 45.0% |
| !! | AAGTGTGTTGGTGATGGAGA+TGG | + | chr4.2:23081465-23081484 | MS.gene39527:CDS | 45.0% |
| !! | AGATGAAAAGGGGTATTCGG+AGG | - | chr4.2:23080415-23080434 | None:intergenic | 45.0% |
| !! | GAGATTGTTGGTGATGGAGA+TGG | + | chr4.2:23081204-23081223 | MS.gene39527:CDS | 45.0% |
| !! | TGGTGGATTCGGGTTTGAAT+AGG | - | chr4.2:23080240-23080259 | None:intergenic | 45.0% |
| !!! | CCGATTTTGATGGTGGATTC+GGG | - | chr4.2:23080250-23080269 | None:intergenic | 45.0% |
| AACCTCCCCATCAAAGATCC+AGG | + | chr4.2:23080289-23080308 | MS.gene39527:CDS | 50.0% | |
| CTCACACTTCAATTCCTCGC+CGG | + | chr4.2:23080193-23080212 | MS.gene39527:CDS | 50.0% | |
| CTGAACCGATGAAGGTTACG+AGG | + | chr4.2:23080653-23080672 | MS.gene39527:CDS | 50.0% | |
| CTTGTCATCCTCACACTCCT+CGG | - | chr4.2:23081066-23081085 | None:intergenic | 50.0% | |
| GGATAGTGTGAAGGAGAAGG+TGG | + | chr4.2:23081035-23081054 | MS.gene39527:CDS | 50.0% | |
| GGTATTCGGAGGAACAGGTT+TGG | - | chr4.2:23080404-23080423 | None:intergenic | 50.0% | |
| TACCTGGATCTTTGATGGGG+AGG | - | chr4.2:23080294-23080313 | None:intergenic | 50.0% | |
| TAGTGTGAAGGAGAAGGTGG+AGG | + | chr4.2:23081038-23081057 | MS.gene39527:CDS | 50.0% | |
| ! | AAACAAGGGGTGGTGCTAAG+GGG | + | chr4.2:23081163-23081182 | MS.gene39527:CDS | 50.0% |
| ! | ACCCCTTTTCATCTCAGCGA+TGG | + | chr4.2:23080421-23080440 | MS.gene39527:CDS | 50.0% |
| ! | GAAAACAAGGGGTGGTGCTA+AGG | + | chr4.2:23081161-23081180 | MS.gene39527:CDS | 50.0% |
| ! | GAGGAAGAGTGTGTTGGTGA+TGG | + | chr4.2:23081267-23081286 | MS.gene39527:CDS | 50.0% |
| !! | AAAGGGGTATTCGGAGGAAC+AGG | - | chr4.2:23080409-23080428 | None:intergenic | 50.0% |
| !! | CTCGTAACCTTCATCGGTTC+AGG | - | chr4.2:23080655-23080674 | None:intergenic | 50.0% |
| !! | GATGACCCGACCGATTTTGA+TGG | - | chr4.2:23080260-23080279 | None:intergenic | 50.0% |
| AAAATCGGTCGGGTCATCCG+CGG | + | chr4.2:23080262-23080281 | MS.gene39527:CDS | 55.0% | |
| CCATCACCAACACGCTCTTC+TGG | - | chr4.2:23081318-23081337 | None:intergenic | 55.0% | |
| CGAAGAATGTGAGGGTGACG+AGG | + | chr4.2:23080737-23080756 | MS.gene39527:CDS | 55.0% | |
| GGATCGACCTGAACCGATGA+AGG | + | chr4.2:23080645-23080664 | MS.gene39527:CDS | 55.0% | |
| GGTTTCTCCCTTACGTGGAC+CGG | - | chr4.2:23080215-23080234 | None:intergenic | 55.0% | |
| TCGTCACCAACGCACTCTTC+CGG | - | chr4.2:23081366-23081385 | None:intergenic | 55.0% | |
| TTACGAGGAATACGCGGAGC+AGG | + | chr4.2:23080668-23080687 | MS.gene39527:CDS | 55.0% | |
| ! | AGGTGGGTTTCTCCCTTACG+TGG | - | chr4.2:23080220-23080239 | None:intergenic | 55.0% |
| ! | CCAGAAGAGCGTGTTGGTGA+TGG | + | chr4.2:23081315-23081334 | MS.gene39527:CDS | 55.0% |
| ! | CGAGGAGTGTGAGGATGACA+AGG | + | chr4.2:23081064-23081083 | MS.gene39527:CDS | 55.0% |
| !! | GACCCGACCGATTTTGATGG+TGG | - | chr4.2:23080257-23080276 | None:intergenic | 55.0% |
| ATTCCTCGCCGGTCCACGTA+AGG | + | chr4.2:23080204-23080223 | MS.gene39527:CDS | 60.0% | |
| GACGTACTCGCGGAGTCTCT+CGG | - | chr4.2:23081658-23081677 | None:intergenic | 60.0% | |
| TGATGGGGAGGTTGTTGCCG+CGG | - | chr4.2:23080282-23080301 | None:intergenic | 60.0% | |
| TTCCTCGCCGGTCCACGTAA+GGG | + | chr4.2:23080205-23080224 | MS.gene39527:CDS | 60.0% | |
| AGGAGAAGGTGGAGGAGCCG+AGG | + | chr4.2:23081046-23081065 | MS.gene39527:CDS | 65.0% | |
| ! | TGGAGGAGCCGAGGAGTGTG+AGG | + | chr4.2:23081055-23081074 | MS.gene39527:CDS | 65.0% |
| CTCCCTTACGTGGACCGGCG+AGG | - | chr4.2:23080210-23080229 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 23080166 | 23081722 | 23080166 | ID=MS.gene39527 |
| chr4.2 | mRNA | 23080166 | 23081722 | 23080166 | ID=MS.gene39527.t1;Parent=MS.gene39527 |
| chr4.2 | exon | 23080166 | 23081722 | 23080166 | ID=MS.gene39527.t1.exon1;Parent=MS.gene39527.t1 |
| chr4.2 | CDS | 23080166 | 23081722 | 23080166 | ID=cds.MS.gene39527.t1;Parent=MS.gene39527.t1 |
| Gene Sequence |
| Protein sequence |
