Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39932.t1 | XP_003590556.1 | 96.4 | 112 | 1 | 1 | 1 | 112 | 1 | 109 | 1.20E-51 | 212.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39932.t1 | Q93V47 | 57.6 | 92 | 39 | 0 | 21 | 112 | 9 | 100 | 2.0e-26 | 119.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39932.t1 | G7ICP9 | 96.4 | 112 | 1 | 1 | 1 | 112 | 1 | 109 | 8.7e-52 | 212.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050807 | MS.gene39932 | 0.800964 | 1.13E-48 | -1.69E-46 |
| MS.gene052665 | MS.gene39932 | 0.819596 | 1.07E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene39932 | 0.804776 | 1.84E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39932.t1 | MTR_1g071100 | 96.429 | 112 | 1 | 1 | 1 | 112 | 1 | 109 | 6.91e-75 | 217 |
| MS.gene39932.t1 | MTR_1g076640 | 61.628 | 86 | 33 | 0 | 27 | 112 | 23 | 108 | 1.15e-32 | 110 |
| MS.gene39932.t1 | MTR_1g010050 | 37.037 | 81 | 49 | 1 | 33 | 111 | 45 | 125 | 5.64e-16 | 68.6 |
| MS.gene39932.t1 | MTR_1g076580 | 49.367 | 79 | 37 | 1 | 6 | 84 | 5 | 80 | 1.74e-15 | 66.2 |
| MS.gene39932.t1 | MTR_1g076580 | 53.846 | 65 | 30 | 0 | 20 | 84 | 16 | 80 | 1.77e-15 | 66.2 |
| MS.gene39932.t1 | MTR_1g076640 | 56.897 | 58 | 25 | 0 | 27 | 84 | 23 | 80 | 1.33e-14 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39932.t1 | AT3G63420 | 50.000 | 100 | 46 | 1 | 13 | 112 | 3 | 98 | 8.21e-32 | 108 |
| MS.gene39932.t1 | AT3G63420 | 50.000 | 100 | 46 | 1 | 13 | 112 | 3 | 98 | 8.21e-32 | 108 |
| MS.gene39932.t1 | AT3G63420 | 50.000 | 100 | 46 | 1 | 13 | 112 | 43 | 138 | 1.47e-31 | 108 |
| MS.gene39932.t1 | AT3G22942 | 57.609 | 92 | 39 | 0 | 21 | 112 | 9 | 100 | 3.94e-31 | 106 |
Find 26 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGACCTGTAAACCTCTTA+TGG | 0.220609 | 1.4:-58249245 | MS.gene39932:CDS |
| CTAACAAACCTGAAGAAATT+TGG | 0.263400 | 1.4:+58251576 | None:intergenic |
| TTCTCTGATAACAGAGTTCA+TGG | 0.283632 | 1.4:-58249264 | MS.gene39932:intron |
| ACAAGATACCAAATTTCTTC+AGG | 0.322473 | 1.4:-58251584 | MS.gene39932:intron |
| CTATCCCATAAGAGGTTTAC+AGG | 0.323497 | 1.4:+58249240 | None:intergenic |
| TAAACCTCTTATGGGATAGA+TGG | 0.349715 | 1.4:-58249236 | MS.gene39932:CDS |
| TGAATGTATTCAGGAAGAAT+TGG | 0.367884 | 1.4:-58249727 | MS.gene39932:intron |
| CAAACCATCTATCCCATAAG+AGG | 0.395789 | 1.4:+58249232 | None:intergenic |
| AGAAATTACTCTGGGATTAG+TGG | 0.405087 | 1.4:+58249349 | None:intergenic |
| GTGTGTTATGGCGTCTGAAA+CGG | 0.409047 | 1.4:-58251725 | None:intergenic |
| TACTCTGGGATTAGTGGATC+AGG | 0.437858 | 1.4:+58249355 | None:intergenic |
| TGGACCTGTAAACCTCTTAT+GGG | 0.444843 | 1.4:-58249244 | MS.gene39932:CDS |
| TTATGGGATAGATGGTTTGA+AGG | 0.464564 | 1.4:-58249228 | MS.gene39932:CDS |
| TAGATGGTTTGAAGGGCCTC+AGG | 0.521777 | 1.4:-58249220 | MS.gene39932:CDS |
| GTCTGAAACGGCGTCGTCTG+CGG | 0.528907 | 1.4:-58251713 | MS.gene39932:CDS |
| ATCCGCAAGCATGTAGATGT+TGG | 0.541129 | 1.4:-58249197 | MS.gene39932:CDS |
| TATGGGATAGATGGTTTGAA+GGG | 0.555121 | 1.4:-58249227 | MS.gene39932:CDS |
| CAGCTGAAACAGAAACAACA+AGG | 0.578916 | 1.4:+58251674 | None:intergenic |
| GATGCTGCGACTGATAAAAG+AGG | 0.596351 | 1.4:-58251643 | MS.gene39932:CDS |
| GCGCAGATTGCTACAAAACA+TGG | 0.600608 | 1.4:-58249386 | MS.gene39932:intron |
| ATCCAACATCTACATGCTTG+CGG | 0.601467 | 1.4:+58249195 | None:intergenic |
| CTACATGCTTGCGGATCCTG+AGG | 0.605370 | 1.4:+58249204 | None:intergenic |
| AAATGTGTCGGCTATATGCA+AGG | 0.619090 | 1.4:-58249685 | MS.gene39932:CDS |
| ATGCTGCGACTGATAAAAGA+GGG | 0.639427 | 1.4:-58251642 | MS.gene39932:CDS |
| CGAGAAAACAGAAAATGTGT+CGG | 0.640254 | 1.4:-58249697 | MS.gene39932:CDS |
| AGCTGAAACAGAAACAACAA+GGG | 0.720366 | 1.4:+58251675 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAGAATTTTATTTTTATC+AGG | + | chr1.4:58249677-58249696 | None:intergenic | 10.0% |
| !! | AAAAAACACATAAATACTAT+GGG | + | chr1.4:58250186-58250205 | None:intergenic | 15.0% |
| !! | AAAATAAACTTAACTTATAG+CGG | - | chr1.4:58250872-58250891 | MS.gene39932:intron | 15.0% |
| !! | ATCAAAAAAGAAAAAATGTA+TGG | + | chr1.4:58250966-58250985 | None:intergenic | 15.0% |
| !! | ATGTATAATGTATAACTAAA+GGG | - | chr1.4:58249386-58249405 | MS.gene39932:intron | 15.0% |
| !! | TATGTATAATGTATAACTAA+AGG | - | chr1.4:58249385-58249404 | MS.gene39932:intron | 15.0% |
| !! | ACTAAAGATCATAAATTCAA+AGG | + | chr1.4:58250241-58250260 | None:intergenic | 20.0% |
| !! | CAAAAAACACATAAATACTA+TGG | + | chr1.4:58250187-58250206 | None:intergenic | 20.0% |
| !! | CATTATACATAGTTCAAAAA+AGG | + | chr1.4:58249376-58249395 | None:intergenic | 20.0% |
| !! | GATAAATTACAAAACAATGT+GGG | - | chr1.4:58250297-58250316 | MS.gene39932:intron | 20.0% |
| !! | TAATTGCTTAAATCAATGTT+AGG | - | chr1.4:58251037-58251056 | MS.gene39932:intron | 20.0% |
| !! | TGATAAATTACAAAACAATG+TGG | - | chr1.4:58250296-58250315 | MS.gene39932:intron | 20.0% |
| !! | TTACAAAAAAAAACCCAAAT+TGG | + | chr1.4:58249874-58249893 | None:intergenic | 20.0% |
| !! | TTTATAGCTTAAGCTTATAT+TGG | - | chr1.4:58250404-58250423 | MS.gene39932:intron | 20.0% |
| !!! | GTTTTTTATATAAAAACGAC+TGG | - | chr1.4:58249744-58249763 | MS.gene39932:intron | 20.0% |
| !!! | TTGTAATTTTCTACTTAGTT+TGG | - | chr1.4:58249981-58250000 | MS.gene39932:intron | 20.0% |
| !!! | TTTTAACAGAAGCTAATTAT+AGG | + | chr1.4:58251100-58251119 | None:intergenic | 20.0% |
| !!! | TTTTTTGTAAGAGATTAGAT+GGG | - | chr1.4:58249884-58249903 | MS.gene39932:intron | 20.0% |
| !!! | TTTTTTTGTAAGAGATTAGA+TGG | - | chr1.4:58249883-58249902 | MS.gene39932:intron | 20.0% |
| ! | AACAATCATGCATCAAAATT+GGG | + | chr1.4:58250345-58250364 | None:intergenic | 25.0% |
| ! | ACAACTCTAACAAAAAAACT+AGG | + | chr1.4:58251422-58251441 | None:intergenic | 25.0% |
| ! | ATTTCCTTCCAAAGTATATA+TGG | - | chr1.4:58250577-58250596 | MS.gene39932:intron | 25.0% |
| ! | CATTCAATAACTCATGTATT+TGG | + | chr1.4:58249707-58249726 | None:intergenic | 25.0% |
| ! | CTGATATAGATAATACTTGT+TGG | - | chr1.4:58251349-58251368 | MS.gene39932:intron | 25.0% |
| ! | TATATATGGAAAGTTGAAAC+CGG | - | chr1.4:58250591-58250610 | MS.gene39932:intron | 25.0% |
| ! | TCAACTTTCCATATATACTT+TGG | + | chr1.4:58250588-58250607 | None:intergenic | 25.0% |
| ! | TCTAACAAAAAAACTAGGAT+TGG | + | chr1.4:58251417-58251436 | None:intergenic | 25.0% |
| ! | TCTCCAATTTGAAAATGTTA+AGG | + | chr1.4:58249787-58249806 | None:intergenic | 25.0% |
| ! | TTAAGCTTATATTGGAATGT+TGG | - | chr1.4:58250412-58250431 | MS.gene39932:intron | 25.0% |
| ! | TTTATATAAAAACGACTGGA+GGG | - | chr1.4:58249748-58249767 | MS.gene39932:intron | 25.0% |
| !! | AAGGCTTAAACAATTTTACT+TGG | - | chr1.4:58251493-58251512 | MS.gene39932:intron | 25.0% |
| !! | AATTAGCTTCTGTTAAAAGT+TGG | - | chr1.4:58251102-58251121 | MS.gene39932:intron | 25.0% |
| !! | AGTCCTTAACATTTTCAAAT+TGG | - | chr1.4:58249781-58249800 | MS.gene39932:intron | 25.0% |
| !! | ATAGATAATACTTGTTGGAT+TGG | - | chr1.4:58251354-58251373 | MS.gene39932:intron | 25.0% |
| !! | TATATTGGAATGTTGGTTAA+CGG | - | chr1.4:58250419-58250438 | MS.gene39932:intron | 25.0% |
| !! | TTTTATATAAAAACGACTGG+AGG | - | chr1.4:58249747-58249766 | MS.gene39932:intron | 25.0% |
| !! | TTTTTGTAAGAGATTAGATG+GGG | - | chr1.4:58249885-58249904 | MS.gene39932:intron | 25.0% |
| !!! | TCTTTGCTCTAGATTTTATA+TGG | - | chr1.4:58249939-58249958 | MS.gene39932:intron | 25.0% |
| !!! | TTTTTTTCCTGAATGTATTC+AGG | - | chr1.4:58251170-58251189 | MS.gene39932:intron | 25.0% |
| AAAACTGTTAGGAACCAATT+TGG | - | chr1.4:58249857-58249876 | MS.gene39932:intron | 30.0% | |
| AAACTGTTAGGAACCAATTT+GGG | - | chr1.4:58249858-58249877 | MS.gene39932:intron | 30.0% | |
| AATAGACCAACAAATTTGTG+TGG | + | chr1.4:58250019-58250038 | None:intergenic | 30.0% | |
| AATATTGTGAGGAACCAAAA+TGG | - | chr1.4:58249915-58249934 | MS.gene39932:intron | 30.0% | |
| AATTCTTCCTGAATACATTC+AGG | + | chr1.4:58251180-58251199 | None:intergenic | 30.0% | |
| ACAACACATTGTACTAAATC+GGG | + | chr1.4:58250696-58250715 | None:intergenic | 30.0% | |
| ACAAGATACCAAATTTCTTC+AGG | - | chr1.4:58249322-58249341 | MS.gene39932:intron | 30.0% | |
| AGAATACAGAGTAAAGATGT+AGG | + | chr1.4:58251587-58251606 | None:intergenic | 30.0% | |
| AGTTGATCTGATAATTGGTT+TGG | - | chr1.4:58250515-58250534 | MS.gene39932:intron | 30.0% | |
| ATATTGTGAGGAACCAAAAT+GGG | - | chr1.4:58249916-58249935 | MS.gene39932:intron | 30.0% | |
| CAACAATCATGCATCAAAAT+TGG | + | chr1.4:58250346-58250365 | None:intergenic | 30.0% | |
| CTAACAAACCTGAAGAAATT+TGG | + | chr1.4:58249333-58249352 | None:intergenic | 30.0% | |
| CTTTCCATATATACTTTGGA+AGG | + | chr1.4:58250584-58250603 | None:intergenic | 30.0% | |
| GAAACACATATTGAACCATA+TGG | - | chr1.4:58250796-58250815 | MS.gene39932:intron | 30.0% | |
| GACAACACATTGTACTAAAT+CGG | + | chr1.4:58250697-58250716 | None:intergenic | 30.0% | |
| TAGGTAAGAGAAATTACTCT+GGG | + | chr1.4:58251568-58251587 | None:intergenic | 30.0% | |
| TCAGGAAATAAATTGTACCA+CGG | + | chr1.4:58249659-58249678 | None:intergenic | 30.0% | |
| TCTCAAATTATTAACGACGT+CGG | + | chr1.4:58249519-58249538 | None:intergenic | 30.0% | |
| TGAATGTATTCAGGAAGAAT+TGG | - | chr1.4:58251179-58251198 | MS.gene39932:intron | 30.0% | |
| TGCTTATTGTTTACAACAGA+AGG | + | chr1.4:58250214-58250233 | None:intergenic | 30.0% | |
| TTAATGCCACACAAATTTGT+TGG | - | chr1.4:58250010-58250029 | MS.gene39932:intron | 30.0% | |
| TTGTGCTACAATATGCTATA+AGG | - | chr1.4:58251474-58251493 | MS.gene39932:intron | 30.0% | |
| ! | ATATGGTGTTTCTTGTTTCT+AGG | - | chr1.4:58249956-58249975 | MS.gene39932:intron | 30.0% |
| ! | ATCGAAGTTGATCTGATAAT+TGG | - | chr1.4:58250510-58250529 | MS.gene39932:intron | 30.0% |
| ! | TTAGGACATTTTGCAAAGTT+GGG | - | chr1.4:58251055-58251074 | MS.gene39932:intron | 30.0% |
| !! | AACTAAAGGGTATTAGATCT+TGG | - | chr1.4:58249399-58249418 | MS.gene39932:intron | 30.0% |
| !! | CTTTAGTTCTTTACACTATG+TGG | - | chr1.4:58250254-58250273 | MS.gene39932:intron | 30.0% |
| !! | TATGGTGTTTCTTGTTTCTA+GGG | - | chr1.4:58249957-58249976 | MS.gene39932:intron | 30.0% |
| !! | TGGTTCCTAACAGTTTTATA+CGG | + | chr1.4:58249854-58249873 | None:intergenic | 30.0% |
| AAGTGAACAAAAGGGTCAAT+GGG | + | chr1.4:58251380-58251399 | None:intergenic | 35.0% | |
| AGATTTGACCAATGAGGTTA+TGG | - | chr1.4:58250107-58250126 | MS.gene39932:intron | 35.0% | |
| AGCTGAAACAGAAACAACAA+GGG | + | chr1.4:58249234-58249253 | None:intergenic | 35.0% | |
| ATTGTACTAAATCGGGTATC+AGG | + | chr1.4:58250689-58250708 | None:intergenic | 35.0% | |
| CGAGAAAACAGAAAATGTGT+CGG | - | chr1.4:58251209-58251228 | MS.gene39932:intron | 35.0% | |
| GAATGTGAGTATTTAGCAAG+CGG | - | chr1.4:58250995-58251014 | MS.gene39932:intron | 35.0% | |
| GAGTGAAAAACTATGAAGCA+CGG | - | chr1.4:58249458-58249477 | MS.gene39932:intron | 35.0% | |
| GTAGGTAAGAGAAATTACTC+TGG | + | chr1.4:58251569-58251588 | None:intergenic | 35.0% | |
| GTCATCCGTATAAAACTGTT+AGG | - | chr1.4:58249846-58249865 | MS.gene39932:intron | 35.0% | |
| TAAACCTCTTATGGGATAGA+TGG | - | chr1.4:58251670-58251689 | MS.gene39932:CDS | 35.0% | |
| TACAATGTGTTGTCAAGTAG+TGG | - | chr1.4:58250703-58250722 | MS.gene39932:intron | 35.0% | |
| TATGGGATAGATGGTTTGAA+GGG | - | chr1.4:58251679-58251698 | MS.gene39932:CDS | 35.0% | |
| TATTTAGCAAGCGGTTATGT+TGG | - | chr1.4:58251004-58251023 | MS.gene39932:intron | 35.0% | |
| TCTTTCTGATTTCCTTGCAA+AGG | - | chr1.4:58250915-58250934 | MS.gene39932:intron | 35.0% | |
| TGTAGTAGATTTGACCAATG+AGG | - | chr1.4:58250101-58250120 | MS.gene39932:intron | 35.0% | |
| TGTTGTATTCCTGCATTTGT+TGG | - | chr1.4:58251135-58251154 | MS.gene39932:intron | 35.0% | |
| TTATGGGATAGATGGTTTGA+AGG | - | chr1.4:58251678-58251697 | MS.gene39932:CDS | 35.0% | |
| TTCTCTGATAACAGAGTTCA+TGG | - | chr1.4:58251642-58251661 | MS.gene39932:CDS | 35.0% | |
| TTTCCTTGCAAAGGTTAATG+TGG | - | chr1.4:58250924-58250943 | MS.gene39932:intron | 35.0% | |
| ! | GTTAGGACATTTTGCAAAGT+TGG | - | chr1.4:58251054-58251073 | MS.gene39932:intron | 35.0% |
| !! | AGAAATTACTCTGGGATTAG+TGG | + | chr1.4:58251560-58251579 | None:intergenic | 35.0% |
| AAATCGGGTATCAGGAAAAG+CGG | + | chr1.4:58250681-58250700 | None:intergenic | 40.0% | |
| ACCACCCATTCCTCTATATA+TGG | + | chr1.4:58250137-58250156 | None:intergenic | 40.0% | |
| ACGGATGACAAATTAGTCCT+CGG | + | chr1.4:58249835-58249854 | None:intergenic | 40.0% | |
| ATCCAACATCTACATGCTTG+CGG | + | chr1.4:58251714-58251733 | None:intergenic | 40.0% | |
| ATGCTGCGACTGATAAAAGA+GGG | - | chr1.4:58249264-58249283 | MS.gene39932:intron | 40.0% | |
| ATGGACCTGTAAACCTCTTA+TGG | - | chr1.4:58251661-58251680 | MS.gene39932:CDS | 40.0% | |
| CAAACCATCTATCCCATAAG+AGG | + | chr1.4:58251677-58251696 | None:intergenic | 40.0% | |
| CAAGTGAACAAAAGGGTCAA+TGG | + | chr1.4:58251381-58251400 | None:intergenic | 40.0% | |
| CAGCTGAAACAGAAACAACA+AGG | + | chr1.4:58249235-58249254 | None:intergenic | 40.0% | |
| CATCCCACAAGTGAACAAAA+GGG | + | chr1.4:58251388-58251407 | None:intergenic | 40.0% | |
| CTATCCCATAAGAGGTTTAC+AGG | + | chr1.4:58251669-58251688 | None:intergenic | 40.0% | |
| CTGGCCATATATAGAGGAAT+GGG | - | chr1.4:58250130-58250149 | MS.gene39932:intron | 40.0% | |
| GAACCACATTAACCTTTGCA+AGG | + | chr1.4:58250930-58250949 | None:intergenic | 40.0% | |
| GATTACCAACCAACAAATGC+AGG | + | chr1.4:58251147-58251166 | None:intergenic | 40.0% | |
| TCATCCCACAAGTGAACAAA+AGG | + | chr1.4:58251389-58251408 | None:intergenic | 40.0% | |
| TCTGTTCGTGCTAGAAGTTT+CGG | - | chr1.4:58250819-58250838 | MS.gene39932:intron | 40.0% | |
| TGGACCTGTAAACCTCTTAT+GGG | - | chr1.4:58251662-58251681 | MS.gene39932:CDS | 40.0% | |
| TTCGGTGAAAGCTGTGATAT+AGG | - | chr1.4:58250837-58250856 | MS.gene39932:intron | 40.0% | |
| TTCTCTGTTATAATGAGCCG+AGG | - | chr1.4:58249815-58249834 | MS.gene39932:intron | 40.0% | |
| ! | ACTGGGACATGCTTAATTTG+AGG | - | chr1.4:58249603-58249622 | MS.gene39932:intron | 40.0% |
| ! | ATGCTTAATTTGAGGAGCGT+CGG | - | chr1.4:58249611-58249630 | MS.gene39932:intron | 40.0% |
| ! | GTATTCCTGCATTTGTTGGT+TGG | - | chr1.4:58251139-58251158 | MS.gene39932:intron | 40.0% |
| ! | TGACCCTTTTGTTCACTTGT+GGG | - | chr1.4:58251382-58251401 | MS.gene39932:intron | 40.0% |
| ! | TTATGGCTGGCCATATATAG+AGG | - | chr1.4:58250124-58250143 | MS.gene39932:intron | 40.0% |
| ! | TTGACCCTTTTGTTCACTTG+TGG | - | chr1.4:58251381-58251400 | MS.gene39932:intron | 40.0% |
| !! | AAATGTGTCGGCTATATGCA+AGG | - | chr1.4:58251221-58251240 | MS.gene39932:intron | 40.0% |
| !! | AAGCTTTTTCTGCTGATGTG+TGG | - | chr1.4:58250453-58250472 | MS.gene39932:intron | 40.0% |
| !! | ATAGCGCTAAAGCACTGATA+CGG | + | chr1.4:58250633-58250652 | None:intergenic | 40.0% |
| !! | TCTAGAGCAAAGACCCATTT+TGG | + | chr1.4:58249932-58249951 | None:intergenic | 40.0% |
| AAACCGGCGTTGTCATATAC+AGG | - | chr1.4:58250607-58250626 | MS.gene39932:intron | 45.0% | |
| ATCCGCAAGCATGTAGATGT+TGG | - | chr1.4:58251709-58251728 | MS.gene39932:CDS | 45.0% | |
| GATGCTGCGACTGATAAAAG+AGG | - | chr1.4:58249263-58249282 | MS.gene39932:intron | 45.0% | |
| GCCATATATAGAGGAATGGG+TGG | - | chr1.4:58250133-58250152 | MS.gene39932:intron | 45.0% | |
| GCGCAGATTGCTACAAAACA+TGG | - | chr1.4:58251520-58251539 | MS.gene39932:intron | 45.0% | |
| GCTGGCCATATATAGAGGAA+TGG | - | chr1.4:58250129-58250148 | MS.gene39932:intron | 45.0% | |
| TAAGAGATTAGATGGGGTCG+CGG | - | chr1.4:58249891-58249910 | MS.gene39932:intron | 45.0% | |
| TCTAGCACGAACAGACCATA+TGG | + | chr1.4:58250814-58250833 | None:intergenic | 45.0% | |
| TGAAGCACGGATACAAACAC+CGG | - | chr1.4:58249471-58249490 | MS.gene39932:intron | 45.0% | |
| TTGACCAATGAGGTTATGGC+TGG | - | chr1.4:58250111-58250130 | MS.gene39932:intron | 45.0% | |
| !! | GTCAGTATCAGTGTCGTTTC+CGG | + | chr1.4:58249493-58249512 | None:intergenic | 45.0% |
| !! | TACTCTGGGATTAGTGGATC+AGG | + | chr1.4:58251554-58251573 | None:intergenic | 45.0% |
| AAGAGATTAGATGGGGTCGC+GGG | - | chr1.4:58249892-58249911 | MS.gene39932:intron | 50.0% | |
| ACCACGGTAAAGACCAGACT+GGG | + | chr1.4:58249643-58249662 | None:intergenic | 50.0% | |
| ATGGCCAGCCATAACCTCAT+TGG | + | chr1.4:58250118-58250137 | None:intergenic | 50.0% | |
| TACCACGGTAAAGACCAGAC+TGG | + | chr1.4:58249644-58249663 | None:intergenic | 50.0% | |
| TAGATGGTTTGAAGGGCCTC+AGG | - | chr1.4:58251686-58251705 | MS.gene39932:CDS | 50.0% | |
| ACACGACACGTGTTCGACAC+TGG | - | chr1.4:58249585-58249604 | MS.gene39932:intron | 55.0% | |
| CACGACACGTGTTCGACACT+GGG | - | chr1.4:58249586-58249605 | MS.gene39932:intron | 55.0% | |
| CGGCCTGTATATGACAACGC+CGG | + | chr1.4:58250613-58250632 | None:intergenic | 55.0% | |
| CTACATGCTTGCGGATCCTG+AGG | + | chr1.4:58251705-58251724 | None:intergenic | 55.0% | |
| GTGTCGAACACGTGTCGTGT+CGG | + | chr1.4:58249585-58249604 | None:intergenic | 55.0% | |
| TGTCGAACACGTGTCGTGTC+GGG | + | chr1.4:58249584-58249603 | None:intergenic | 55.0% | |
| ! | ACCCAGTCTGGTCTTTACCG+TGG | - | chr1.4:58249639-58249658 | MS.gene39932:intron | 55.0% |
| GGGGTCGCGGGAATATTGTG+AGG | - | chr1.4:58249904-58249923 | MS.gene39932:intron | 60.0% | |
| ! | GTCTGAAACGGCGTCGTCTG+CGG | - | chr1.4:58249193-58249212 | MS.gene39932:CDS | 60.0% |
| ! | GCGTCGGTGAAGACCCAGTC+TGG | - | chr1.4:58249627-58249646 | MS.gene39932:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 58249188 | 58251740 | 58249188 | ID=MS.gene39932 |
| chr1.4 | mRNA | 58249188 | 58251740 | 58249188 | ID=MS.gene39932.t1;Parent=MS.gene39932 |
| chr1.4 | exon | 58251585 | 58251740 | 58251585 | ID=MS.gene39932.t1.exon1;Parent=MS.gene39932.t1 |
| chr1.4 | CDS | 58251585 | 58251740 | 58251585 | ID=cds.MS.gene39932.t1;Parent=MS.gene39932.t1 |
| chr1.4 | exon | 58249684 | 58249736 | 58249684 | ID=MS.gene39932.t1.exon2;Parent=MS.gene39932.t1 |
| chr1.4 | CDS | 58249684 | 58249736 | 58249684 | ID=cds.MS.gene39932.t1;Parent=MS.gene39932.t1 |
| chr1.4 | exon | 58249358 | 58249402 | 58249358 | ID=MS.gene39932.t1.exon3;Parent=MS.gene39932.t1 |
| chr1.4 | CDS | 58249358 | 58249402 | 58249358 | ID=cds.MS.gene39932.t1;Parent=MS.gene39932.t1 |
| chr1.4 | exon | 58249188 | 58249272 | 58249188 | ID=MS.gene39932.t1.exon4;Parent=MS.gene39932.t1 |
| chr1.4 | CDS | 58249188 | 58249272 | 58249188 | ID=cds.MS.gene39932.t1;Parent=MS.gene39932.t1 |
| Gene Sequence |
| Protein sequence |
