Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40009.t1 | XP_003590692.1 | 94.7 | 318 | 17 | 0 | 1 | 318 | 3 | 320 | 4.90E-114 | 421 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40009.t1 | Q39089 | 69.7 | 185 | 50 | 3 | 137 | 318 | 132 | 313 | 2.1e-65 | 250.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40009.t1 | G7I2K5 | 94.7 | 318 | 17 | 0 | 1 | 318 | 3 | 320 | 3.5e-114 | 421.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052600 | MS.gene40009 | 0.806632 | 7.49E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40009.t1 | MTR_1g072640 | 96.541 | 318 | 11 | 0 | 1 | 318 | 3 | 320 | 0.0 | 619 |
| MS.gene40009.t1 | MTR_1g072640 | 95.417 | 240 | 11 | 0 | 1 | 240 | 3 | 242 | 2.73e-140 | 396 |
| MS.gene40009.t1 | MTR_1g072620 | 67.797 | 59 | 19 | 0 | 243 | 301 | 9 | 67 | 1.37e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40009.t1 | AT2G48120 | 67.823 | 317 | 84 | 6 | 16 | 318 | 1 | 313 | 1.90e-116 | 338 |
| MS.gene40009.t1 | AT2G48120 | 65.931 | 317 | 84 | 7 | 16 | 318 | 1 | 307 | 7.44e-109 | 319 |
Find 61 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGAGAGAAGTGGAGGTT+AGG | 0.318785 | 1.4:+59511402 | None:intergenic |
| AGAGAGAGAAGTGGAGGTTA+GGG | 0.333651 | 1.4:+59511403 | None:intergenic |
| TTTAAGAAGATGTGTCAATA+AGG | 0.343769 | 1.4:-59511216 | MS.gene40009:CDS |
| AGTAGAAGCTCTACTAGATT+TGG | 0.362994 | 1.4:-59506477 | MS.gene40009:CDS |
| AAGGAAGAGGTGCTTCTAGA+AGG | 0.394925 | 1.4:-59511191 | MS.gene40009:CDS |
| ATATCAAATGACTCAAATCC+AGG | 0.411113 | 1.4:+59507087 | None:intergenic |
| GCAAGACGTTCGGTCGGAAC+AGG | 0.428212 | 1.4:-59506585 | MS.gene40009:CDS |
| CACCTATTTACAGGATGAAA+AGG | 0.437281 | 1.4:-59507804 | MS.gene40009:intron |
| TGCTATATGGATCCTCCCTT+GGG | 0.442722 | 1.4:+59507121 | None:intergenic |
| AAAGGATGCTATAAGAAGTC+TGG | 0.442751 | 1.4:-59507786 | MS.gene40009:CDS |
| AAGATGTGTCAATAAGGAAA+AGG | 0.455841 | 1.4:-59511210 | MS.gene40009:CDS |
| TGCTAATATATTAAAACAGC+AGG | 0.458418 | 1.4:-59506522 | MS.gene40009:CDS |
| ATTTGGCCATTAGTTTGAAC+TGG | 0.463487 | 1.4:-59506460 | MS.gene40009:CDS |
| TAGCTACCAGTTCAAACTAA+TGG | 0.463566 | 1.4:+59506454 | None:intergenic |
| ATGCTATATGGATCCTCCCT+TGG | 0.473549 | 1.4:+59507120 | None:intergenic |
| ATGAATTGCTGCAAGACGTT+CGG | 0.477719 | 1.4:-59506595 | MS.gene40009:CDS |
| GAGAAGGTGTTGTGGCAAGA+AGG | 0.482405 | 1.4:+59511357 | None:intergenic |
| CATCACGCCGAGCAAGATCA+AGG | 0.493288 | 1.4:+59509423 | None:intergenic |
| GAGAAGTGGAGGTTAGGGAG+AGG | 0.495213 | 1.4:+59511408 | None:intergenic |
| GCGTCTTCGATGCAACTCCT+TGG | 0.495907 | 1.4:+59509920 | None:intergenic |
| TCATTGAGTAATCTCATCGC+AGG | 0.500918 | 1.4:+59507219 | None:intergenic |
| AGCCGCTGAAGAAGTAGAAG+AGG | 0.505834 | 1.4:-59509775 | MS.gene40009:intron |
| ATTGAAGAGTATCGTGAAGT+TGG | 0.507618 | 1.4:-59509867 | MS.gene40009:CDS |
| CTTGTTTGTATCAGCATCAC+GGG | 0.514765 | 1.4:-59506685 | MS.gene40009:intron |
| CGGAAAGAAAGAGAGAGAAG+TGG | 0.515526 | 1.4:+59511394 | None:intergenic |
| TAAGATAGGAATGGCAAGCC+CGG | 0.518072 | 1.4:-59509956 | MS.gene40009:intron |
| AATCTAGTAGAGCTTCTACT+TGG | 0.521112 | 1.4:+59506480 | None:intergenic |
| GTCTGGATCTGTTATACAGA+AGG | 0.537384 | 1.4:-59507769 | MS.gene40009:CDS |
| AGAAGGTGTTGTGGCAAGAA+GGG | 0.541691 | 1.4:+59511358 | None:intergenic |
| TGAAGTTGGCATGCGGCTGA+AGG | 0.547056 | 1.4:-59509853 | MS.gene40009:CDS |
| AGGAAGAGGTGCTTCTAGAA+GGG | 0.551744 | 1.4:-59511190 | MS.gene40009:CDS |
| ATCAAATGACTCAAATCCAG+GGG | 0.552629 | 1.4:+59507089 | None:intergenic |
| TATCAAATGACTCAAATCCA+GGG | 0.569402 | 1.4:+59507088 | None:intergenic |
| TGTCAATAAGGAAAAGGAAG+AGG | 0.574293 | 1.4:-59511204 | MS.gene40009:CDS |
| AAGACGCAGAGAGGAAGAAG+AGG | 0.575839 | 1.4:-59509904 | MS.gene40009:CDS |
| ATTGAGGAAGCTGCTGAGAG+AGG | 0.576137 | 1.4:-59509485 | MS.gene40009:CDS |
| TCTTGTTTGTATCAGCATCA+CGG | 0.580699 | 1.4:-59506686 | MS.gene40009:intron |
| CACCTCTTCTACTTCTTCAG+CGG | 0.584322 | 1.4:+59509773 | None:intergenic |
| GGAATCGCCTTGATCTTGCT+CGG | 0.587486 | 1.4:-59509430 | MS.gene40009:CDS |
| CATTGAGTAATCTCATCGCA+GGG | 0.591092 | 1.4:+59507220 | None:intergenic |
| AAGAAGATGTTAGAAAAGCA+AGG | 0.592506 | 1.4:-59509821 | MS.gene40009:CDS |
| AAAGAAAGAGAGAGAAGTGG+AGG | 0.597434 | 1.4:+59511397 | None:intergenic |
| CCACGGAAACTAACCTGTGG+TGG | 0.600236 | 1.4:+59511301 | None:intergenic |
| GGGATATGGAGAAGGTGTTG+TGG | 0.606948 | 1.4:+59511349 | None:intergenic |
| ACATCATCATAGTAGTGAGA+AGG | 0.607348 | 1.4:+59511164 | None:intergenic |
| TCTGGATCTGTTATACAGAA+GGG | 0.611300 | 1.4:-59507768 | MS.gene40009:CDS |
| GACTGAGATCTTGAAACGAG+AGG | 0.614776 | 1.4:-59507247 | MS.gene40009:CDS |
| TACAACTGCAAATCCACCAC+AGG | 0.621318 | 1.4:-59511314 | MS.gene40009:intron |
| ACTTCAAGTGATGGTCGCAA+TGG | 0.623785 | 1.4:+59506662 | None:intergenic |
| TCTGTTATACAGAAGGGTTG+AGG | 0.625946 | 1.4:-59507762 | MS.gene40009:intron |
| TCATGATTGATACATTCCCA+AGG | 0.636948 | 1.4:-59507137 | MS.gene40009:CDS |
| TTATCATCGACTTCAAGTGA+TGG | 0.637619 | 1.4:+59506653 | None:intergenic |
| CATGATTGATACATTCCCAA+GGG | 0.662825 | 1.4:-59507136 | MS.gene40009:CDS |
| GTTGCATCGAAGACGCAGAG+AGG | 0.670357 | 1.4:-59509913 | MS.gene40009:CDS |
| ATTGCTGCAAGACGTTCGGT+CGG | 0.675176 | 1.4:-59506591 | MS.gene40009:CDS |
| GATTGATACATTCCCAAGGG+AGG | 0.682890 | 1.4:-59507133 | MS.gene40009:CDS |
| AGAAGGGATGAAGAATAAAG+CGG | 0.691906 | 1.4:+59511374 | None:intergenic |
| CCGGCAACGTGAAAAGACCA+AGG | 0.699550 | 1.4:-59509937 | MS.gene40009:CDS |
| AGTATCGTGAAGTTGGCATG+CGG | 0.712651 | 1.4:-59509860 | MS.gene40009:CDS |
| ATTGAGTAATCTCATCGCAG+GGG | 0.726511 | 1.4:+59507221 | None:intergenic |
| TCAAATGACTCAAATCCAGG+GGG | 0.733559 | 1.4:+59507090 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATATTATTGTATATAAAA+TGG | + | chr1.4:59509535-59509554 | None:intergenic | 10.0% |
| !!! | AAAATGTAATTATATTTTGT+AGG | + | chr1.4:59507160-59507179 | None:intergenic | 10.0% |
| !!! | AAATGTAATTATATTTTGTA+GGG | + | chr1.4:59507159-59507178 | None:intergenic | 10.0% |
| !! | AAAAAAAAACACGATTAAAT+AGG | + | chr1.4:59507064-59507083 | None:intergenic | 15.0% |
| !! | AAAAAAAACACGATTAAATA+GGG | + | chr1.4:59507063-59507082 | None:intergenic | 15.0% |
| !! | AATAGAGTAAAAATTGTTTA+TGG | + | chr1.4:59506860-59506879 | None:intergenic | 15.0% |
| !! | AATATTTATCATAACTAATC+AGG | + | chr1.4:59508220-59508239 | None:intergenic | 15.0% |
| !! | ACAAAATTCTGAATATTTAT+AGG | + | chr1.4:59507129-59507148 | None:intergenic | 15.0% |
| !! | ATCCAATGTATTTAAAAAAA+TGG | + | chr1.4:59510421-59510440 | None:intergenic | 15.0% |
| !! | ATGATTATTATAATCTGAAA+GGG | - | chr1.4:59509942-59509961 | MS.gene40009:CDS | 15.0% |
| !! | ATTATTTGTCAAAAAAAAAG+TGG | + | chr1.4:59509710-59509729 | None:intergenic | 15.0% |
| !! | ATTTAACCAACTTATATAAA+TGG | + | chr1.4:59510995-59511014 | None:intergenic | 15.0% |
| !! | CAAAATTCTGAATATTTATA+GGG | + | chr1.4:59507128-59507147 | None:intergenic | 15.0% |
| !! | GTCTATCATAATAAATTATT+TGG | + | chr1.4:59509863-59509882 | None:intergenic | 15.0% |
| !! | TATGATTATTATAATCTGAA+AGG | - | chr1.4:59509941-59509960 | MS.gene40009:CDS | 15.0% |
| !!! | AAAAAGCATAAATAAACAAA+AGG | + | chr1.4:59508286-59508305 | None:intergenic | 15.0% |
| !!! | AATGTGTGATTTTATTTTAT+AGG | - | chr1.4:59507315-59507334 | MS.gene40009:intron | 15.0% |
| !!! | ATAAGTTTGATTTAAAAGTA+AGG | - | chr1.4:59511083-59511102 | MS.gene40009:intron | 15.0% |
| !!! | ATGTGTGATTTTATTTTATA+GGG | - | chr1.4:59507316-59507335 | MS.gene40009:intron | 15.0% |
| !!! | TAATATTTTTTCCCTATAAT+AGG | + | chr1.4:59510265-59510284 | None:intergenic | 15.0% |
| !!! | TTTGAAATATTTTAGGTAAT+TGG | - | chr1.4:59508491-59508510 | MS.gene40009:intron | 15.0% |
| !!! | TTTTACCAAATCTATAATAA+CGG | - | chr1.4:59510821-59510840 | MS.gene40009:intron | 15.0% |
| !! | AATCAACCATTTATATAAGT+TGG | - | chr1.4:59510986-59511005 | MS.gene40009:intron | 20.0% |
| !! | ACGAAATTCTGAATATTTAT+AGG | - | chr1.4:59507346-59507365 | MS.gene40009:intron | 20.0% |
| !! | ATTAAACCTTCAAACAAAAT+TGG | + | chr1.4:59507872-59507891 | None:intergenic | 20.0% |
| !! | ATTAAGTGATTAAACTTGAT+TGG | - | chr1.4:59511046-59511065 | MS.gene40009:intron | 20.0% |
| !! | CCATTTAAACTAAAAATTGT+AGG | - | chr1.4:59511117-59511136 | MS.gene40009:intron | 20.0% |
| !! | CGAAATTCTGAATATTTATA+GGG | - | chr1.4:59507347-59507366 | MS.gene40009:intron | 20.0% |
| !! | GAATATAAACTTAATTAAGC+TGG | + | chr1.4:59506792-59506811 | None:intergenic | 20.0% |
| !! | GATTAATGTATAAAACAAGA+TGG | + | chr1.4:59510050-59510069 | None:intergenic | 20.0% |
| !! | GCTTAATTAAGTTTATATTC+TGG | - | chr1.4:59506792-59506811 | MS.gene40009:intron | 20.0% |
| !! | TTAGTTAACAATTGATCAAT+TGG | + | chr1.4:59510943-59510962 | None:intergenic | 20.0% |
| !! | TTGAAAATAAAACTTGATCA+TGG | + | chr1.4:59508180-59508199 | None:intergenic | 20.0% |
| !! | TTGTTCACAAAATCAAAAAT+TGG | + | chr1.4:59508654-59508673 | None:intergenic | 20.0% |
| !!! | AAAAATTCTGTCAACATTTT+TGG | + | chr1.4:59507220-59507239 | None:intergenic | 20.0% |
| !!! | AAATCAACAAAGAGTATTTA+CGG | + | chr1.4:59510364-59510383 | None:intergenic | 20.0% |
| !!! | ATAGTTGACTTTTATTTTTG+TGG | - | chr1.4:59509324-59509343 | MS.gene40009:intron | 20.0% |
| !!! | ATTTTTACTCTATTTCCATT+AGG | - | chr1.4:59506866-59506885 | MS.gene40009:intron | 20.0% |
| !!! | CCTACAATTTTTAGTTTAAA+TGG | + | chr1.4:59511120-59511139 | None:intergenic | 20.0% |
| !!! | CTCCATTTTTTTAAATACAT+TGG | - | chr1.4:59510416-59510435 | MS.gene40009:intron | 20.0% |
| !!! | GTTGACAGAATTTTTTTATA+GGG | - | chr1.4:59507225-59507244 | MS.gene40009:CDS | 20.0% |
| !!! | GTTTTAGTCATAAACAAAAA+GGG | + | chr1.4:59510151-59510170 | None:intergenic | 20.0% |
| !!! | TGTTGACAGAATTTTTTTAT+AGG | - | chr1.4:59507224-59507243 | MS.gene40009:CDS | 20.0% |
| !!! | TTCTGAAAATACTACAAATT+TGG | - | chr1.4:59509560-59509579 | MS.gene40009:intron | 20.0% |
| !!! | TTTGGTGTTTGAAATATTTT+AGG | - | chr1.4:59508484-59508503 | MS.gene40009:intron | 20.0% |
| !!! | TTTTAGTCATAAACAAAAAG+GGG | + | chr1.4:59510150-59510169 | None:intergenic | 20.0% |
| !!! | TTTTGTTTGAAGGTTTAATT+TGG | - | chr1.4:59507873-59507892 | MS.gene40009:intron | 20.0% |
| ! | AATCAAAAATTGGATAACTG+AGG | + | chr1.4:59508644-59508663 | None:intergenic | 25.0% |
| ! | AATTACAGCCTAAATTCATA+GGG | - | chr1.4:59509505-59509524 | MS.gene40009:intron | 25.0% |
| ! | AGCTAACAACAATAAAACAA+AGG | + | chr1.4:59507391-59507410 | None:intergenic | 25.0% |
| ! | ATTGATAAGAGTTTGTAAAG+AGG | + | chr1.4:59507512-59507531 | None:intergenic | 25.0% |
| ! | CAAAATACTTTCTTCTTTGA+TGG | + | chr1.4:59509668-59509687 | None:intergenic | 25.0% |
| ! | CAAAGGGTTAATTAAGTAAT+TGG | + | chr1.4:59507374-59507393 | None:intergenic | 25.0% |
| ! | CGAAAGATTCAAAATTACTA+AGG | + | chr1.4:59509170-59509189 | None:intergenic | 25.0% |
| ! | CTAATATTTGTCAGCTAATT+AGG | - | chr1.4:59507643-59507662 | MS.gene40009:intron | 25.0% |
| ! | GAAAAACAGAAATGATAAGA+AGG | + | chr1.4:59506746-59506765 | None:intergenic | 25.0% |
| ! | GCTAACAACAATAAAACAAA+GGG | + | chr1.4:59507390-59507409 | None:intergenic | 25.0% |
| ! | TAATTAACCCTAAAACAGAT+AGG | + | chr1.4:59507095-59507114 | None:intergenic | 25.0% |
| ! | TAATTACAGCCTAAATTCAT+AGG | - | chr1.4:59509504-59509523 | MS.gene40009:intron | 25.0% |
| ! | TACAAGAGAAAAAGATCAAT+CGG | + | chr1.4:59508364-59508383 | None:intergenic | 25.0% |
| ! | TACATTAATCACCTATTTAC+AGG | - | chr1.4:59510060-59510079 | MS.gene40009:intron | 25.0% |
| ! | TCTTTACAAACTCTTATCAA+TGG | - | chr1.4:59507511-59507530 | MS.gene40009:intron | 25.0% |
| ! | TGCTAATATATTAAAACAGC+AGG | - | chr1.4:59511351-59511370 | MS.gene40009:CDS | 25.0% |
| ! | TTTAAGAAGATGTGTCAATA+AGG | - | chr1.4:59506657-59506676 | MS.gene40009:CDS | 25.0% |
| ! | TTTGTCAAAAAAAAAGTGGA+AGG | + | chr1.4:59509706-59509725 | None:intergenic | 25.0% |
| !! | ACATTATCCTTAAGCATTTT+AGG | - | chr1.4:59507192-59507211 | MS.gene40009:CDS | 25.0% |
| !! | AGTTTGATTTAAAAGTAAGG+TGG | - | chr1.4:59511086-59511105 | MS.gene40009:intron | 25.0% |
| !! | ATGCTGATGGAAAATTTTAT+AGG | - | chr1.4:59507255-59507274 | MS.gene40009:intron | 25.0% |
| !! | ATTTTATCTGCATGACAAAT+AGG | + | chr1.4:59508151-59508170 | None:intergenic | 25.0% |
| !! | CAGAAACTAAAGTATTATGA+AGG | + | chr1.4:59510506-59510525 | None:intergenic | 25.0% |
| !! | CATTATCCTTAAGCATTTTA+GGG | - | chr1.4:59507193-59507212 | MS.gene40009:CDS | 25.0% |
| !! | GAAAATATTTTCATTCCAGA+TGG | - | chr1.4:59508245-59508264 | MS.gene40009:intron | 25.0% |
| !! | TGCTGATGGAAAATTTTATA+AGG | - | chr1.4:59507256-59507275 | MS.gene40009:intron | 25.0% |
| !! | TGCTGATGGAAAATTTTATA+GGG | - | chr1.4:59507256-59507275 | MS.gene40009:intron | 25.0% |
| !! | TTATGTTTTCCTTTTATGAG+TGG | - | chr1.4:59507758-59507777 | MS.gene40009:intron | 25.0% |
| !! | TTTTCTCTTGTAGAAAATTG+AGG | - | chr1.4:59508372-59508391 | MS.gene40009:intron | 25.0% |
| !!! | CGTTTTAGTCATAAACAAAA+AGG | + | chr1.4:59510152-59510171 | None:intergenic | 25.0% |
| !!! | GCTTTTTTAAGTTATCCTAA+TGG | + | chr1.4:59506884-59506903 | None:intergenic | 25.0% |
| !!! | TAATTAACCTTCTCTAAGAT+AGG | - | chr1.4:59507903-59507922 | MS.gene40009:intron | 25.0% |
| !!! | TAGTGATCAGTTTTTTTGTA+GGG | - | chr1.4:59508308-59508327 | MS.gene40009:intron | 25.0% |
| !!! | TTAGTGATCAGTTTTTTTGT+AGG | - | chr1.4:59508307-59508326 | MS.gene40009:intron | 25.0% |
| !!! | TTTGAGGATTGATTTTGTAA+GGG | - | chr1.4:59511249-59511268 | MS.gene40009:intron | 25.0% |
| !!! | TTTTGAGGATTGATTTTGTA+AGG | - | chr1.4:59511248-59511267 | MS.gene40009:intron | 25.0% |
| AACAGAAATGATAAGAAGGA+AGG | + | chr1.4:59506742-59506761 | None:intergenic | 30.0% | |
| AACAGAACATACAGCAAAAT+AGG | + | chr1.4:59509247-59509266 | None:intergenic | 30.0% | |
| AAGAAGATGTTAGAAAAGCA+AGG | - | chr1.4:59508052-59508071 | MS.gene40009:intron | 30.0% | |
| AAGATGTGTCAATAAGGAAA+AGG | - | chr1.4:59506663-59506682 | MS.gene40009:CDS | 30.0% | |
| AATTCCACAGCCAAATAATA+AGG | - | chr1.4:59508953-59508972 | MS.gene40009:intron | 30.0% | |
| AGATGCATATATAGAGTTGA+GGG | + | chr1.4:59509065-59509084 | None:intergenic | 30.0% | |
| AGTTTGACAAGCATGTAAAA+TGG | + | chr1.4:59508723-59508742 | None:intergenic | 30.0% | |
| ATAAGCGCATATCATATAAG+TGG | + | chr1.4:59506997-59507016 | None:intergenic | 30.0% | |
| ATAAGGACTAAAAATGCTGA+TGG | - | chr1.4:59507273-59507292 | MS.gene40009:intron | 30.0% | |
| ATATCAAATGACTCAAATCC+AGG | + | chr1.4:59510789-59510808 | None:intergenic | 30.0% | |
| ATGTCATAAATTGTCCTGAT+TGG | + | chr1.4:59506835-59506854 | None:intergenic | 30.0% | |
| ATGTCTTAAGAGCCTATTAT+AGG | - | chr1.4:59510250-59510269 | MS.gene40009:intron | 30.0% | |
| ATTACAGCCTAAATTCATAG+GGG | - | chr1.4:59509506-59509525 | MS.gene40009:intron | 30.0% | |
| CAGTTGTATGAAGAAAAAGA+GGG | + | chr1.4:59506547-59506566 | None:intergenic | 30.0% | |
| CATATCATATCCGATATAGA+AGG | + | chr1.4:59509925-59509944 | None:intergenic | 30.0% | |
| CCATTGCACCAAAAAAAAAA+AGG | - | chr1.4:59508998-59509017 | MS.gene40009:intron | 30.0% | |
| CTTCAAAGAACTACTAAACA+TGG | + | chr1.4:59507448-59507467 | None:intergenic | 30.0% | |
| GAAAATTGTCCACTCATAAA+AGG | + | chr1.4:59507770-59507789 | None:intergenic | 30.0% | |
| GGTATCCGTTATTATAGATT+TGG | + | chr1.4:59510829-59510848 | None:intergenic | 30.0% | |
| TAACTCTTGACAAATTCTTG+AGG | - | chr1.4:59508829-59508848 | MS.gene40009:intron | 30.0% | |
| TATCAAATGACTCAAATCCA+GGG | + | chr1.4:59510788-59510807 | None:intergenic | 30.0% | |
| TATGAAGAAAAAGAGGGATA+TGG | + | chr1.4:59506541-59506560 | None:intergenic | 30.0% | |
| TCAAAATTACTAAGGAGTGA+AGG | + | chr1.4:59509162-59509181 | None:intergenic | 30.0% | |
| TCAACCATAATGTCAAACTA+CGG | + | chr1.4:59510850-59510869 | None:intergenic | 30.0% | |
| TGTCTTAAGAGCCTATTATA+GGG | - | chr1.4:59510251-59510270 | MS.gene40009:intron | 30.0% | |
| TTATGACTAAAACGCTTTCT+TGG | - | chr1.4:59510158-59510177 | MS.gene40009:intron | 30.0% | |
| ! | ACTCGGTGAAAATAAATAGT+TGG | + | chr1.4:59509817-59509836 | None:intergenic | 30.0% |
| ! | AGTACTACCTATCTGTTTTA+GGG | - | chr1.4:59507085-59507104 | MS.gene40009:CDS | 30.0% |
| ! | ATCCTTTTCATCCTGTAAAT+AGG | + | chr1.4:59510074-59510093 | None:intergenic | 30.0% |
| ! | ATCTTCGGTTACAGTTTTTA+AGG | - | chr1.4:59508588-59508607 | MS.gene40009:intron | 30.0% |
| ! | CCTTTTGTAACCTTCTATAT+CGG | - | chr1.4:59509912-59509931 | MS.gene40009:CDS | 30.0% |
| ! | CTTTTCTAACATCTTCTTCA+GGG | + | chr1.4:59508050-59508069 | None:intergenic | 30.0% |
| ! | TAGTACTACCTATCTGTTTT+AGG | - | chr1.4:59507084-59507103 | MS.gene40009:CDS | 30.0% |
| ! | TCGATGATAATACTCTTTTG+AGG | - | chr1.4:59511233-59511252 | MS.gene40009:intron | 30.0% |
| ! | TCTGTTCTGAGTTTAACTTT+CGG | - | chr1.4:59510522-59510541 | MS.gene40009:intron | 30.0% |
| ! | TGATTTTGTGAACAACATAG+TGG | - | chr1.4:59508659-59508678 | MS.gene40009:intron | 30.0% |
| !! | AGTGGATTCTAAAGTACAAT+CGG | - | chr1.4:59510870-59510889 | MS.gene40009:intron | 30.0% |
| !! | CTATTTATTTTCACCGAGTT+TGG | - | chr1.4:59509818-59509837 | MS.gene40009:CDS | 30.0% |
| !! | GATCTTTTGATTATGTACGA+TGG | - | chr1.4:59510675-59510694 | MS.gene40009:intron | 30.0% |
| !! | GTGAAACCAATTTTGTTTGA+AGG | - | chr1.4:59507863-59507882 | MS.gene40009:intron | 30.0% |
| !! | TAACTCAATTTTGATACCTG+AGG | + | chr1.4:59508781-59508800 | None:intergenic | 30.0% |
| !! | TAAGAACTGTAAAAGCGTTA+CGG | - | chr1.4:59507805-59507824 | MS.gene40009:intron | 30.0% |
| !!! | AACTTGTTTTGATGGTCATA+TGG | - | chr1.4:59508422-59508441 | MS.gene40009:intron | 30.0% |
| !!! | ACTTACTGAACTTGTTTTGA+TGG | - | chr1.4:59508414-59508433 | MS.gene40009:intron | 30.0% |
| !!! | ATGGCTTTAATTTTGATGAG+TGG | - | chr1.4:59510694-59510713 | MS.gene40009:intron | 30.0% |
| !!! | CCTTTTTTTTTTTGGTGCAA+TGG | + | chr1.4:59509001-59509020 | None:intergenic | 30.0% |
| !!! | CGTGATGTAAGTTGTTATTT+TGG | - | chr1.4:59508466-59508485 | MS.gene40009:intron | 30.0% |
| !!! | TTCGGTTTTGACTTTCATAT+TGG | - | chr1.4:59510540-59510559 | MS.gene40009:intron | 30.0% |
| !!! | TTTTTTGATACTGCTGAAGT+TGG | + | chr1.4:59509621-59509640 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTGGTGCAATGGT+GGG | + | chr1.4:59508997-59509016 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTGGTGCAATGG+TGG | + | chr1.4:59508998-59509017 | None:intergenic | 30.0% |
| AAAGGATGCTATAAGAAGTC+TGG | - | chr1.4:59510087-59510106 | MS.gene40009:intron | 35.0% | |
| AATCTAGTAGAGCTTCTACT+TGG | + | chr1.4:59511396-59511415 | None:intergenic | 35.0% | |
| ACATCATCATAGTAGTGAGA+AGG | + | chr1.4:59506712-59506731 | None:intergenic | 35.0% | |
| AGAAAAAGACTTGTACCATC+TGG | + | chr1.4:59508263-59508282 | None:intergenic | 35.0% | |
| AGAAGGGATGAAGAATAAAG+CGG | + | chr1.4:59506502-59506521 | None:intergenic | 35.0% | |
| AGTAGAAGCTCTACTAGATT+TGG | - | chr1.4:59511396-59511415 | MS.gene40009:CDS | 35.0% | |
| ATCAAATGACTCAAATCCAG+GGG | + | chr1.4:59510787-59510806 | None:intergenic | 35.0% | |
| ATGCTTAAGGATAATGTCAC+AGG | + | chr1.4:59507189-59507208 | None:intergenic | 35.0% | |
| ATGTAATCCTTCAACTTAGC+AGG | - | chr1.4:59509728-59509747 | MS.gene40009:intron | 35.0% | |
| ATTACTAAGGAGTGAAGGAT+TGG | + | chr1.4:59509157-59509176 | None:intergenic | 35.0% | |
| ATTGAAATATGTAGCAGCCA+CGG | + | chr1.4:59506592-59506611 | None:intergenic | 35.0% | |
| ATTGTCATATCTTTGATGCC+TGG | - | chr1.4:59507716-59507735 | MS.gene40009:intron | 35.0% | |
| CACCTATTTACAGGATGAAA+AGG | - | chr1.4:59510069-59510088 | MS.gene40009:intron | 35.0% | |
| CATGATTGATACATTCCCAA+GGG | - | chr1.4:59510737-59510756 | MS.gene40009:intron | 35.0% | |
| CCGATATAGAAGGTTACAAA+AGG | + | chr1.4:59509915-59509934 | None:intergenic | 35.0% | |
| CTTAGTTGCTTGATATTTGC+TGG | - | chr1.4:59510221-59510240 | MS.gene40009:intron | 35.0% | |
| GAGATGCATATATAGAGTTG+AGG | + | chr1.4:59509066-59509085 | None:intergenic | 35.0% | |
| GATACCGTAGTTTGACATTA+TGG | - | chr1.4:59510843-59510862 | MS.gene40009:intron | 35.0% | |
| GCAGTTGTATGAAGAAAAAG+AGG | + | chr1.4:59506548-59506567 | None:intergenic | 35.0% | |
| GCTTGCATCAACTTTCATAT+TGG | - | chr1.4:59510470-59510489 | MS.gene40009:intron | 35.0% | |
| GTTTGACATTATGGTTGAAG+TGG | - | chr1.4:59510852-59510871 | MS.gene40009:intron | 35.0% | |
| TAGGGATGAATTGACACTAT+TGG | + | chr1.4:59507045-59507064 | None:intergenic | 35.0% | |
| TCATGATTGATACATTCCCA+AGG | - | chr1.4:59510736-59510755 | MS.gene40009:intron | 35.0% | |
| TCTCTAAACATATTCTGCCA+AGG | + | chr1.4:59507689-59507708 | None:intergenic | 35.0% | |
| TCTGGATCTGTTATACAGAA+GGG | - | chr1.4:59510105-59510124 | MS.gene40009:intron | 35.0% | |
| TGAAAATCAGAAATTGTGCC+AGG | + | chr1.4:59507737-59507756 | None:intergenic | 35.0% | |
| TGCACCAAAAAAAAAAAGGC+AGG | - | chr1.4:59509002-59509021 | MS.gene40009:intron | 35.0% | |
| TGCAGTGAACACTTATATTC+TGG | + | chr1.4:59510305-59510324 | None:intergenic | 35.0% | |
| TGCTTAAGGATAATGTCACA+GGG | + | chr1.4:59507188-59507207 | None:intergenic | 35.0% | |
| TGTCAATAAGGAAAAGGAAG+AGG | - | chr1.4:59506669-59506688 | MS.gene40009:CDS | 35.0% | |
| TGTGCTTATACAAACAACCT+TGG | - | chr1.4:59507669-59507688 | MS.gene40009:intron | 35.0% | |
| TTACTAAGGAGTGAAGGATT+GGG | + | chr1.4:59509156-59509175 | None:intergenic | 35.0% | |
| TTGACAAATTCTTGAGGTTG+AGG | - | chr1.4:59508835-59508854 | MS.gene40009:intron | 35.0% | |
| TTTGAATTATGCTGCTAGCT+TGG | - | chr1.4:59509266-59509285 | MS.gene40009:intron | 35.0% | |
| TTTGGTCCCTAAAATGCTTA+AGG | + | chr1.4:59507202-59507221 | None:intergenic | 35.0% | |
| ! | ATTTGGCCATTAGTTTGAAC+TGG | - | chr1.4:59511413-59511432 | MS.gene40009:CDS | 35.0% |
| ! | GCTTTTCTAACATCTTCTTC+AGG | + | chr1.4:59508051-59508070 | None:intergenic | 35.0% |
| ! | GGTTAATGTTTTGTGCACTA+TGG | + | chr1.4:59509030-59509049 | None:intergenic | 35.0% |
| ! | GTCAAGTTTGCTTAGATTTC+AGG | - | chr1.4:59509413-59509432 | MS.gene40009:intron | 35.0% |
| ! | GTTTGCTTTAGACACTACAA+TGG | - | chr1.4:59509346-59509365 | MS.gene40009:intron | 35.0% |
| ! | TATCATTTTGCGCATGTATG+AGG | + | chr1.4:59508895-59508914 | None:intergenic | 35.0% |
| ! | TCAGAGCTTGCCTTATTATT+TGG | + | chr1.4:59508966-59508985 | None:intergenic | 35.0% |
| ! | TCTTCTTTGATGGTTACACT+TGG | + | chr1.4:59509658-59509677 | None:intergenic | 35.0% |
| ! | TCTTGTTTGTATCAGCATCA+CGG | - | chr1.4:59511187-59511206 | MS.gene40009:CDS | 35.0% |
| ! | TGAGTGGACAATTTTCTTCT+TGG | - | chr1.4:59507774-59507793 | MS.gene40009:CDS | 35.0% |
| ! | TTTTGAACCCATCAAATGTC+AGG | - | chr1.4:59509791-59509810 | MS.gene40009:CDS | 35.0% |
| !! | AACCTTCTCTAAGATAGGAA+TGG | - | chr1.4:59507908-59507927 | MS.gene40009:intron | 35.0% |
| !! | ACGTTGTAGCTTGTTGAAAT+TGG | - | chr1.4:59507473-59507492 | MS.gene40009:intron | 35.0% |
| !! | ATGAAAGTTGATGCAAGCAA+AGG | + | chr1.4:59510468-59510487 | None:intergenic | 35.0% |
| !! | ATTGAAGAGTATCGTGAAGT+TGG | - | chr1.4:59508006-59508025 | MS.gene40009:intron | 35.0% |
| !! | CGTTGTAGCTTGTTGAAATT+GGG | - | chr1.4:59507474-59507493 | MS.gene40009:intron | 35.0% |
| !! | CTTACCATTTTTCAATGAGC+TGG | - | chr1.4:59508551-59508570 | MS.gene40009:intron | 35.0% |
| !! | TCTTTTACCTGCTAAGTTGA+AGG | + | chr1.4:59509738-59509757 | None:intergenic | 35.0% |
| !! | TTATCATCGACTTCAAGTGA+TGG | + | chr1.4:59511223-59511242 | None:intergenic | 35.0% |
| !!! | ACTATTTTAAGACCCCTGTT+TGG | + | chr1.4:59507020-59507039 | None:intergenic | 35.0% |
| !!! | CTCTTTAGCAGCAGATTTTT+TGG | + | chr1.4:59510331-59510350 | None:intergenic | 35.0% |
| AAAGAAAGAGAGAGAAGTGG+AGG | + | chr1.4:59506479-59506498 | None:intergenic | 40.0% | |
| AACAAGATGGTCAGAGAAAG+AGG | + | chr1.4:59510037-59510056 | None:intergenic | 40.0% | |
| AACCGAAGATTGACAGTCAA+AGG | + | chr1.4:59508578-59508597 | None:intergenic | 40.0% | |
| AAGCACTTGTGAAACCAATC+AGG | - | chr1.4:59506818-59506837 | MS.gene40009:intron | 40.0% | |
| AAGTAGAAGAGGTGATGTCT+TGG | - | chr1.4:59508109-59508128 | MS.gene40009:intron | 40.0% | |
| AAGTCCCACATTGGATAGAT+AGG | + | chr1.4:59507538-59507557 | None:intergenic | 40.0% | |
| ACCATTTATATACACGCACC+AGG | + | chr1.4:59507602-59507621 | None:intergenic | 40.0% | |
| ACTCAAGAGTTTGACAAGCA+TGG | + | chr1.4:59508688-59508707 | None:intergenic | 40.0% | |
| AGGACCAGCTCATTGAAAAA+TGG | + | chr1.4:59508558-59508577 | None:intergenic | 40.0% | |
| ATAGGGACTGAAAATGCTGA+TGG | - | chr1.4:59507242-59507261 | MS.gene40009:CDS | 40.0% | |
| ATATGCGCTTATCCAAACAG+GGG | - | chr1.4:59507005-59507024 | MS.gene40009:intron | 40.0% | |
| ATCTATCCAATGTGGGACTT+GGG | - | chr1.4:59507538-59507557 | MS.gene40009:intron | 40.0% | |
| ATGAATTGCTGCAAGACGTT+CGG | - | chr1.4:59511278-59511297 | MS.gene40009:intron | 40.0% | |
| ATGGAGTCCCCTATGAATTT+AGG | + | chr1.4:59509516-59509535 | None:intergenic | 40.0% | |
| ATGGTCCTATCTATCCAATG+TGG | - | chr1.4:59507530-59507549 | MS.gene40009:intron | 40.0% | |
| ATTGAGTAATCTCATCGCAG+GGG | + | chr1.4:59510655-59510674 | None:intergenic | 40.0% | |
| CAACATGAATCCATCTGCAA+AGG | - | chr1.4:59509094-59509113 | MS.gene40009:intron | 40.0% | |
| CAACTTAGCAGGTAAAAGAG+TGG | - | chr1.4:59509739-59509758 | MS.gene40009:intron | 40.0% | |
| CATTGAGTAATCTCATCGCA+GGG | + | chr1.4:59510656-59510675 | None:intergenic | 40.0% | |
| CTCGAGTTTGACAATCATGA+CGG | - | chr1.4:59509450-59509469 | MS.gene40009:CDS | 40.0% | |
| CTTGTTTGTATCAGCATCAC+GGG | - | chr1.4:59511188-59511207 | MS.gene40009:CDS | 40.0% | |
| GAAAAAGAGGGATATGGAGA+AGG | + | chr1.4:59506535-59506554 | None:intergenic | 40.0% | |
| GATATGCGCTTATCCAAACA+GGG | - | chr1.4:59507004-59507023 | MS.gene40009:intron | 40.0% | |
| GCGTGTATATAAATGGTGGT+TGG | - | chr1.4:59507605-59507624 | MS.gene40009:intron | 40.0% | |
| GTCCTTTGACTGTCAATCTT+CGG | - | chr1.4:59508573-59508592 | MS.gene40009:intron | 40.0% | |
| GTCTGGATCTGTTATACAGA+AGG | - | chr1.4:59510104-59510123 | MS.gene40009:intron | 40.0% | |
| GTCTTTGTGAAGTAGAACTG+TGG | - | chr1.4:59509474-59509493 | MS.gene40009:CDS | 40.0% | |
| TACGGCTCAACACACTTTAA+TGG | - | chr1.4:59510191-59510210 | MS.gene40009:intron | 40.0% | |
| TACGGTATCAATGTGTCTCT+TGG | - | chr1.4:59507823-59507842 | MS.gene40009:intron | 40.0% | |
| TACTAAGGAGTGAAGGATTG+GGG | + | chr1.4:59509155-59509174 | None:intergenic | 40.0% | |
| TATCTATCCAATGTGGGACT+TGG | - | chr1.4:59507537-59507556 | MS.gene40009:intron | 40.0% | |
| TCAAATGACTCAAATCCAGG+GGG | + | chr1.4:59510786-59510805 | None:intergenic | 40.0% | |
| TCATTGAGTAATCTCATCGC+AGG | + | chr1.4:59510657-59510676 | None:intergenic | 40.0% | |
| TCTGTTATACAGAAGGGTTG+AGG | - | chr1.4:59510111-59510130 | MS.gene40009:intron | 40.0% | |
| TGATATGCGCTTATCCAAAC+AGG | - | chr1.4:59507003-59507022 | MS.gene40009:intron | 40.0% | |
| TGCCATTCCTATCTTAGAGA+AGG | + | chr1.4:59507913-59507932 | None:intergenic | 40.0% | |
| TGGTCCTATCTATCCAATGT+GGG | - | chr1.4:59507531-59507550 | MS.gene40009:intron | 40.0% | |
| TGGTGCGTGTATATAAATGG+TGG | - | chr1.4:59507601-59507620 | MS.gene40009:intron | 40.0% | |
| ! | AGTTGATGCAAGCAAAGGTA+TGG | + | chr1.4:59510463-59510482 | None:intergenic | 40.0% |
| ! | ATAGTTGGCCTGACATTTGA+TGG | + | chr1.4:59509802-59509821 | None:intergenic | 40.0% |
| ! | CTTGCCTTATTATTTGGCTG+TGG | + | chr1.4:59508960-59508979 | None:intergenic | 40.0% |
| ! | GTTGATGCAAGCAAAGGTAT+GGG | + | chr1.4:59510462-59510481 | None:intergenic | 40.0% |
| ! | TAGTTGGCCTGACATTTGAT+GGG | + | chr1.4:59509801-59509820 | None:intergenic | 40.0% |
| ! | TTGACTCGTAAACTTGCAAG+AGG | + | chr1.4:59509398-59509417 | None:intergenic | 40.0% |
| !! | GAGGATTGATTTTGTAAGGG+AGG | - | chr1.4:59511252-59511271 | MS.gene40009:intron | 40.0% |
| !! | TAGCTTGTTGAAATTGGGTG+AGG | - | chr1.4:59507479-59507498 | MS.gene40009:intron | 40.0% |
| !!! | CAGTTTTTTTGTAGGGACAC+TGG | - | chr1.4:59508315-59508334 | MS.gene40009:intron | 40.0% |
| !!! | GGAGCCTGCCTTTTTTTTTT+TGG | + | chr1.4:59509009-59509028 | None:intergenic | 40.0% |
| AAAGTGTGTTGAGCCGTAGA+GGG | + | chr1.4:59510189-59510208 | None:intergenic | 45.0% | |
| AAGAGAGAGAAGTGGAGGTT+AGG | + | chr1.4:59506474-59506493 | None:intergenic | 45.0% | |
| ACTAAGGAGTGAAGGATTGG+GGG | + | chr1.4:59509154-59509173 | None:intergenic | 45.0% | |
| ACTTCAAGTGATGGTCGCAA+TGG | + | chr1.4:59511214-59511233 | None:intergenic | 45.0% | |
| AGAGAGAGAAGTGGAGGTTA+GGG | + | chr1.4:59506473-59506492 | None:intergenic | 45.0% | |
| AGTATCGTGAAGTTGGCATG+CGG | - | chr1.4:59508013-59508032 | MS.gene40009:intron | 45.0% | |
| AGTTGAGGGTTACAGCTATG+AGG | + | chr1.4:59509051-59509070 | None:intergenic | 45.0% | |
| ATGCTATATGGATCCTCCCT+TGG | + | chr1.4:59510756-59510775 | None:intergenic | 45.0% | |
| CACCTCTTCTACTTCTTCAG+CGG | + | chr1.4:59508103-59508122 | None:intergenic | 45.0% | |
| CATGAATCCATCTGCAAAGG+AGG | - | chr1.4:59509097-59509116 | MS.gene40009:intron | 45.0% | |
| CGGAAAGAAAGAGAGAGAAG+TGG | + | chr1.4:59506482-59506501 | None:intergenic | 45.0% | |
| GACTGAGATCTTGAAACGAG+AGG | - | chr1.4:59510626-59510645 | MS.gene40009:intron | 45.0% | |
| GATTGATACATTCCCAAGGG+AGG | - | chr1.4:59510740-59510759 | MS.gene40009:intron | 45.0% | |
| GCCTGGTGCGTGTATATAAA+TGG | - | chr1.4:59507598-59507617 | MS.gene40009:intron | 45.0% | |
| GGGGGAACAAGAATGCTATA+TGG | + | chr1.4:59510768-59510787 | None:intergenic | 45.0% | |
| TAAAGTGTGTTGAGCCGTAG+AGG | + | chr1.4:59510190-59510209 | None:intergenic | 45.0% | |
| TAAGATAGGAATGGCAAGCC+CGG | - | chr1.4:59507917-59507936 | MS.gene40009:intron | 45.0% | |
| TACAACTGCAAATCCACCAC+AGG | - | chr1.4:59506559-59506578 | MS.gene40009:CDS | 45.0% | |
| TATAGCATTCTTGTTCCCCC+TGG | - | chr1.4:59510768-59510787 | MS.gene40009:intron | 45.0% | |
| TCGTTTACCTCCTTTGCAGA+TGG | + | chr1.4:59509107-59509126 | None:intergenic | 45.0% | |
| TGACAGCTTGACTCCAAACT+CGG | + | chr1.4:59509834-59509853 | None:intergenic | 45.0% | |
| TGCTATATGGATCCTCCCTT+GGG | + | chr1.4:59510755-59510774 | None:intergenic | 45.0% | |
| ! | ATTATGCTGCTAGCTTGGTC+TGG | - | chr1.4:59509271-59509290 | MS.gene40009:intron | 45.0% |
| !! | AAGGAAGAGGTGCTTCTAGA+AGG | - | chr1.4:59506682-59506701 | MS.gene40009:intron | 45.0% |
| !! | AGAAGGTGTTGTGGCAAGAA+GGG | + | chr1.4:59506518-59506537 | None:intergenic | 45.0% |
| !! | AGGAAGAGGTGCTTCTAGAA+GGG | - | chr1.4:59506683-59506702 | MS.gene40009:intron | 45.0% |
| !!! | ATAGTTTTTTTTTTTTTTTT+TGG | - | chr1.4:59506909-59506928 | MS.gene40009:intron | 5.0% |
| !!! | CATATTTTTATTTTTTTATA+AGG | - | chr1.4:59508928-59508947 | MS.gene40009:intron | 5.0% |
| !!! | TTGATTTTTTTTTTTTATTT+TGG | - | chr1.4:59506627-59506646 | MS.gene40009:CDS | 5.0% |
| AAGACGCAGAGAGGAAGAAG+AGG | - | chr1.4:59507969-59507988 | MS.gene40009:intron | 50.0% | |
| AAGTGTGTTGAGCCGTAGAG+GGG | + | chr1.4:59510188-59510207 | None:intergenic | 50.0% | |
| AGCCGCTGAAGAAGTAGAAG+AGG | - | chr1.4:59508098-59508117 | MS.gene40009:intron | 50.0% | |
| ATTGAGGAAGCTGCTGAGAG+AGG | - | chr1.4:59508388-59508407 | MS.gene40009:intron | 50.0% | |
| ATTGCTGCAAGACGTTCGGT+CGG | - | chr1.4:59511282-59511301 | MS.gene40009:intron | 50.0% | |
| CTAAGGAGTGAAGGATTGGG+GGG | + | chr1.4:59509153-59509172 | None:intergenic | 50.0% | |
| GGAAAACCCAAGTCCCACAT+TGG | + | chr1.4:59507547-59507566 | None:intergenic | 50.0% | |
| GGAATCGCCTTGATCTTGCT+CGG | - | chr1.4:59508443-59508462 | MS.gene40009:intron | 50.0% | |
| TCACACGAGCTTACAACCTC+AGG | - | chr1.4:59508762-59508781 | MS.gene40009:intron | 50.0% | |
| TTTCTTGGTTCCCCCCTCTA+CGG | - | chr1.4:59510173-59510192 | MS.gene40009:intron | 50.0% | |
| !! | CCTTGGTCTTTTCACGTTGC+CGG | + | chr1.4:59507939-59507958 | None:intergenic | 50.0% |
| !! | CTTGGTCTTTTCACGTTGCC+GGG | + | chr1.4:59507938-59507957 | None:intergenic | 50.0% |
| !! | GAGAAGGTGTTGTGGCAAGA+AGG | + | chr1.4:59506519-59506538 | None:intergenic | 50.0% |
| !! | GGGATATGGAGAAGGTGTTG+TGG | + | chr1.4:59506527-59506546 | None:intergenic | 50.0% |
| AGTGTGTTGAGCCGTAGAGG+GGG | + | chr1.4:59510187-59510206 | None:intergenic | 55.0% | |
| CAGCCACGGAAACTAACCTG+TGG | + | chr1.4:59506578-59506597 | None:intergenic | 55.0% | |
| CATCACGCCGAGCAAGATCA+AGG | + | chr1.4:59508453-59508472 | None:intergenic | 55.0% | |
| CCACGGAAACTAACCTGTGG+TGG | + | chr1.4:59506575-59506594 | None:intergenic | 55.0% | |
| CCCTCACGCCCAACACTATT+GGG | - | chr1.4:59507576-59507595 | MS.gene40009:intron | 55.0% | |
| CCGGCAACGTGAAAAGACCA+AGG | - | chr1.4:59507936-59507955 | MS.gene40009:intron | 55.0% | |
| GAGAAGTGGAGGTTAGGGAG+AGG | + | chr1.4:59506468-59506487 | None:intergenic | 55.0% | |
| GCACCAGGCCCAATAGTGTT+GGG | + | chr1.4:59507587-59507606 | None:intergenic | 55.0% | |
| GCGTCTTCGATGCAACTCCT+TGG | + | chr1.4:59507956-59507975 | None:intergenic | 55.0% | |
| GTTGCATCGAAGACGCAGAG+AGG | - | chr1.4:59507960-59507979 | MS.gene40009:intron | 55.0% | |
| TGAAGTTGGCATGCGGCTGA+AGG | - | chr1.4:59508020-59508039 | MS.gene40009:intron | 55.0% | |
| TGGTGGTTGGCGCTATCGAT+AGG | - | chr1.4:59507618-59507637 | MS.gene40009:intron | 55.0% | |
| ! | CAATAGTGTTGGGCGTGAGG+GGG | + | chr1.4:59507577-59507596 | None:intergenic | 55.0% |
| ! | CCAATAGTGTTGGGCGTGAG+GGG | + | chr1.4:59507578-59507597 | None:intergenic | 55.0% |
| ! | CCCAATAGTGTTGGGCGTGA+GGG | + | chr1.4:59507579-59507598 | None:intergenic | 55.0% |
| ! | CTGCTAGCTTGGTCTGGTCT+GGG | - | chr1.4:59509277-59509296 | MS.gene40009:intron | 55.0% |
| !! | CCACCACAGGTTAGTTTCCG+TGG | - | chr1.4:59506572-59506591 | MS.gene40009:CDS | 55.0% |
| !! | TAAGGCAAGCTCTGAGCCAC+TGG | - | chr1.4:59508971-59508990 | MS.gene40009:intron | 55.0% |
| ACGCCCAACACTATTGGGCC+TGG | - | chr1.4:59507581-59507600 | MS.gene40009:intron | 60.0% | |
| CCCCTCACGCCCAACACTAT+TGG | - | chr1.4:59507575-59507594 | MS.gene40009:intron | 60.0% | |
| CGCACCAGGCCCAATAGTGT+TGG | + | chr1.4:59507588-59507607 | None:intergenic | 60.0% | |
| GCAAGACGTTCGGTCGGAAC+AGG | - | chr1.4:59511288-59511307 | MS.gene40009:intron | 60.0% | |
| GTGTGTTGAGCCGTAGAGGG+GGG | + | chr1.4:59510186-59510205 | None:intergenic | 60.0% | |
| ! | GCCCAATAGTGTTGGGCGTG+AGG | + | chr1.4:59507580-59507599 | None:intergenic | 60.0% |
| ! | GCTGCTAGCTTGGTCTGGTC+TGG | - | chr1.4:59509276-59509295 | MS.gene40009:intron | 60.0% |
| ! | TGGGCGTGAGGGGGTGTATT+GGG | + | chr1.4:59507568-59507587 | None:intergenic | 60.0% |
| ! | TTGGGCGTGAGGGGGTGTAT+TGG | + | chr1.4:59507569-59507588 | None:intergenic | 60.0% |
| !! | TTGGTGCAATGGTGGGCCAG+TGG | + | chr1.4:59508990-59509009 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59506457 | 59511438 | 59506457 | ID=MS.gene40009 |
| chr1.4 | mRNA | 59506457 | 59511438 | 59506457 | ID=MS.gene40009.t1;Parent=MS.gene40009 |
| chr1.4 | exon | 59511315 | 59511438 | 59511315 | ID=MS.gene40009.t1.exon1;Parent=MS.gene40009.t1 |
| chr1.4 | CDS | 59511315 | 59511438 | 59511315 | ID=cds.MS.gene40009.t1;Parent=MS.gene40009.t1 |
| chr1.4 | exon | 59511166 | 59511239 | 59511166 | ID=MS.gene40009.t1.exon2;Parent=MS.gene40009.t1 |
| chr1.4 | CDS | 59511166 | 59511239 | 59511166 | ID=cds.MS.gene40009.t1;Parent=MS.gene40009.t1 |
| chr1.4 | exon | 59509776 | 59509970 | 59509776 | ID=MS.gene40009.t1.exon3;Parent=MS.gene40009.t1 |
| chr1.4 | CDS | 59509776 | 59509970 | 59509776 | ID=cds.MS.gene40009.t1;Parent=MS.gene40009.t1 |
| chr1.4 | exon | 59509424 | 59509510 | 59509424 | ID=MS.gene40009.t1.exon4;Parent=MS.gene40009.t1 |
| chr1.4 | CDS | 59509424 | 59509510 | 59509424 | ID=cds.MS.gene40009.t1;Parent=MS.gene40009.t1 |
| chr1.4 | exon | 59507763 | 59507813 | 59507763 | ID=MS.gene40009.t1.exon5;Parent=MS.gene40009.t1 |
| chr1.4 | CDS | 59507763 | 59507813 | 59507763 | ID=cds.MS.gene40009.t1;Parent=MS.gene40009.t1 |
| chr1.4 | exon | 59507080 | 59507268 | 59507080 | ID=MS.gene40009.t1.exon6;Parent=MS.gene40009.t1 |
| chr1.4 | CDS | 59507080 | 59507268 | 59507080 | ID=cds.MS.gene40009.t1;Parent=MS.gene40009.t1 |
| chr1.4 | exon | 59506457 | 59506693 | 59506457 | ID=MS.gene40009.t1.exon7;Parent=MS.gene40009.t1 |
| chr1.4 | CDS | 59506457 | 59506693 | 59506457 | ID=cds.MS.gene40009.t1;Parent=MS.gene40009.t1 |
| Gene Sequence |
| Protein sequence |
