Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40012.t1 | XP_003590698.1 | 83.8 | 396 | 57 | 2 | 1 | 393 | 1 | 392 | 8.10E-127 | 463.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40012.t1 | A1A6M1 | 50.8 | 256 | 115 | 5 | 118 | 368 | 113 | 362 | 1.5e-57 | 224.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40012.t1 | G7I2L5 | 83.8 | 396 | 57 | 2 | 1 | 393 | 1 | 392 | 5.9e-127 | 463.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053907 | MS.gene40012 | 0.81116 | 8.04E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40012.t1 | MTR_1g072690 | 89.899 | 396 | 33 | 2 | 1 | 393 | 1 | 392 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40012.t1 | AT4G13670 | 54.430 | 395 | 162 | 9 | 3 | 390 | 1 | 384 | 8.64e-135 | 391 |
| MS.gene40012.t1 | AT4G13670 | 50.992 | 353 | 155 | 9 | 3 | 348 | 1 | 342 | 2.18e-101 | 305 |
| MS.gene40012.t1 | AT4G13670 | 53.731 | 268 | 114 | 6 | 3 | 265 | 1 | 263 | 1.50e-77 | 241 |
| MS.gene40012.t1 | AT4G13670 | 53.731 | 268 | 114 | 6 | 3 | 265 | 1 | 263 | 1.50e-77 | 241 |
Find 109 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACTTGAGGTTCAATATT+TGG | 0.133095 | 1.4:+59536676 | None:intergenic |
| TCTTCTTGAGAGGCTATATT+TGG | 0.177538 | 1.4:-59538260 | MS.gene40012:CDS |
| ATAGGAAGCATTGCTAAAAT+TGG | 0.187653 | 1.4:-59538980 | MS.gene40012:intron |
| GATGGGATGCTTCTGTTTCT+TGG | 0.211385 | 1.4:+59537483 | None:intergenic |
| TGCCCTAGGCCTTCACAATA+TGG | 0.248289 | 1.4:+59536528 | None:intergenic |
| ATGAAATGCCTTCAATGTTC+TGG | 0.265689 | 1.4:-59537365 | MS.gene40012:CDS |
| GGTAAGGGAATTGAATTTAT+AGG | 0.268387 | 1.4:+59539563 | None:intergenic |
| AGAGGCTATATTTGGATATA+AGG | 0.293358 | 1.4:-59538252 | MS.gene40012:CDS |
| GGTGTTGAAGGATAAGAATT+TGG | 0.307976 | 1.4:-59539298 | MS.gene40012:CDS |
| ACCTTCGTCGAAAGTCTTGA+TGG | 0.348199 | 1.4:+59537422 | None:intergenic |
| TTTGAGAAATGAGAGGGTTT+TGG | 0.351215 | 1.4:+59539599 | None:intergenic |
| CGACGAAGGTTAGAGTTGAT+AGG | 0.357851 | 1.4:-59537409 | MS.gene40012:CDS |
| GAGTTCTAGGAAGTTGAAAA+TGG | 0.370611 | 1.4:-59537569 | MS.gene40012:intron |
| AGAGTTACAGTGACGGTTAT+GGG | 0.371248 | 1.4:+59539645 | None:intergenic |
| TAGAGTTACAGTGACGGTTA+TGG | 0.378603 | 1.4:+59539644 | None:intergenic |
| TTGAATTTGAAGTTTAAGTT+CGG | 0.384376 | 1.4:+59539404 | None:intergenic |
| AGATGAAGTGGAAGAAGAAA+AGG | 0.404194 | 1.4:-59539223 | MS.gene40012:CDS |
| GAATGTTGCGGCGTTGCTAC+AGG | 0.410320 | 1.4:-59539319 | MS.gene40012:CDS |
| GTTAGTGCTTGAGGAGGAAA+AGG | 0.421005 | 1.4:-59539247 | MS.gene40012:CDS |
| GTGTTCTTCGCGATCGGGAA+TGG | 0.425539 | 1.4:+59539530 | None:intergenic |
| AGAAGAGGTTCAAAAGTTGC+AGG | 0.426132 | 1.4:-59539109 | MS.gene40012:intron |
| TAGGAAGCATTGCTAAAATT+GGG | 0.430808 | 1.4:-59538979 | MS.gene40012:CDS |
| TGAAATGCCTTCAATGTTCT+GGG | 0.435833 | 1.4:-59537364 | MS.gene40012:CDS |
| TATTGTTTAACAGTCTTCGT+TGG | 0.443547 | 1.4:-59538314 | MS.gene40012:intron |
| CAGCGGTGTTCTTCGCGATC+GGG | 0.449847 | 1.4:+59539525 | None:intergenic |
| GCCCTAGGCCTTCACAATAT+GGG | 0.455756 | 1.4:+59536529 | None:intergenic |
| GACGAAGGTTAGAGTTGATA+GGG | 0.456347 | 1.4:-59537408 | MS.gene40012:CDS |
| CCAGCGGTGTTCTTCGCGAT+CGG | 0.462132 | 1.4:+59539524 | None:intergenic |
| GAAGCCATCGTTGTTCTTCA+CGG | 0.463148 | 1.4:+59539499 | None:intergenic |
| TACCTTGCCCAGAACATTGA+AGG | 0.467337 | 1.4:+59537357 | None:intergenic |
| ATTGTTTAACAGTCTTCGTT+GGG | 0.467627 | 1.4:-59538313 | MS.gene40012:intron |
| TCCCCAAGGAGGAAAACTCT+TGG | 0.467714 | 1.4:+59537461 | None:intergenic |
| GACGTCATGATCCCATCCTC+AGG | 0.480208 | 1.4:+59538286 | None:intergenic |
| TCGTTGGGCATCCCTGAGGA+TGG | 0.484266 | 1.4:-59538298 | MS.gene40012:CDS |
| CTGAGCGTGCTGTGAAGACT+TGG | 0.485165 | 1.4:-59538906 | MS.gene40012:CDS |
| CAAGGTATCTTGTTGTGTAC+AGG | 0.491562 | 1.4:-59537341 | MS.gene40012:intron |
| GAATCGATGGAATCGTGAAC+GGG | 0.492158 | 1.4:-59539448 | MS.gene40012:CDS |
| GGCGTTGCTACAGGTGTTGA+AGG | 0.493616 | 1.4:-59539310 | MS.gene40012:CDS |
| GGAGGAAAAGGAAGATGAAG+TGG | 0.494506 | 1.4:-59539235 | MS.gene40012:CDS |
| GGAATCTGTTGAGGTTGTAA+AGG | 0.496533 | 1.4:-59539202 | MS.gene40012:CDS |
| TGCCCATATTGTGAAGGCCT+AGG | 0.500318 | 1.4:-59536531 | MS.gene40012:CDS |
| GTTTATGGAATGGGTGGGTG+AGG | 0.509439 | 1.4:-59536562 | MS.gene40012:CDS |
| TCAGAGGAGGTTAGTGCTTG+AGG | 0.509466 | 1.4:-59539256 | MS.gene40012:CDS |
| TTTGGTGGGGAAAGAGAGTG+TGG | 0.512214 | 1.4:+59539617 | None:intergenic |
| TGTTGAGAAACCTGCTGCTA+AGG | 0.513290 | 1.4:-59539169 | MS.gene40012:CDS |
| AAGAATTTGGTTCTTGAGAG+TGG | 0.516277 | 1.4:-59539285 | MS.gene40012:CDS |
| TCCTCCTTGGGGAAAATCGG+TGG | 0.518446 | 1.4:-59537451 | MS.gene40012:CDS |
| TGAGGTTGTAAAGGAGATTG+TGG | 0.520541 | 1.4:-59539193 | MS.gene40012:CDS |
| AATGGAGCAGTGAGCGGTAA+GGG | 0.522076 | 1.4:+59539548 | None:intergenic |
| TGTGATGCAGTTTATGGAAT+GGG | 0.528310 | 1.4:-59536571 | MS.gene40012:intron |
| CAAGGAGGAAAACTCTTGGA+TGG | 0.534791 | 1.4:+59537465 | None:intergenic |
| ATTGCAGAATGTGATGGATC+TGG | 0.539845 | 1.4:-59536703 | MS.gene40012:intron |
| ATGAGGTTTGAGAAATGAGA+GGG | 0.543349 | 1.4:+59539593 | None:intergenic |
| CGATGCGGTTTCGAATGTTG+CGG | 0.545301 | 1.4:-59539331 | MS.gene40012:CDS |
| TTGAGAGTGGTTCTAGTCAG+AGG | 0.547189 | 1.4:-59539272 | MS.gene40012:CDS |
| GAATGGAGCAGTGAGCGGTA+AGG | 0.547203 | 1.4:+59539547 | None:intergenic |
| CGTTGGGCATCCCTGAGGAT+GGG | 0.552075 | 1.4:-59538297 | MS.gene40012:CDS |
| AAGGGAATTGAATTTATAGG+AGG | 0.553750 | 1.4:+59539566 | None:intergenic |
| GCCCATATTGTGAAGGCCTA+GGG | 0.554880 | 1.4:-59536530 | MS.gene40012:CDS |
| TTCTTCTACGTCTTCCGATG+CGG | 0.555273 | 1.4:-59539346 | MS.gene40012:CDS |
| TGCCTTCAATGTTCTGGGCA+AGG | 0.563469 | 1.4:-59537359 | MS.gene40012:CDS |
| TACAGTGACGGTTATGGGAA+CGG | 0.566716 | 1.4:+59539650 | None:intergenic |
| ATATTTGGATATAAGGACTA+CGG | 0.568308 | 1.4:-59538245 | MS.gene40012:CDS |
| GATGGCTTCGCGAGGAGCAA+CGG | 0.569267 | 1.4:-59539485 | MS.gene40012:CDS |
| ATAACTTGTGATTTGTGTCG+AGG | 0.569352 | 1.4:-59536504 | MS.gene40012:CDS |
| AGTTGATAGGGGCAAGAACA+AGG | 0.571690 | 1.4:-59537396 | MS.gene40012:CDS |
| AACCTCTGAAATTTCTGTCA+CGG | 0.573766 | 1.4:+59537532 | None:intergenic |
| TCTTTGATTGCAGAATGTGA+TGG | 0.581458 | 1.4:-59536709 | MS.gene40012:intron |
| CCGATCGCGAAGAACACCGC+TGG | 0.583146 | 1.4:-59539524 | MS.gene40012:CDS |
| CCTCCTTGGGGAAAATCGGT+GGG | 0.583402 | 1.4:-59537450 | MS.gene40012:CDS |
| GGCTTCGCGAGGAGCAACGG+TGG | 0.584221 | 1.4:-59539482 | MS.gene40012:CDS |
| CGCAACATTCGAAACCGCAT+CGG | 0.587059 | 1.4:+59539332 | None:intergenic |
| AGAATCGATGGAATCGTGAA+CGG | 0.587227 | 1.4:-59539449 | MS.gene40012:CDS |
| TAACTTGTGATTTGTGTCGA+GGG | 0.588543 | 1.4:-59536503 | MS.gene40012:CDS |
| AAGGAGGAAAACTCTTGGAT+GGG | 0.591075 | 1.4:+59537466 | None:intergenic |
| AAGATATAATTCGATGCTCG+AGG | 0.592000 | 1.4:+59539379 | None:intergenic |
| TCGGAAGACGTAGAAGAAGA+AGG | 0.592316 | 1.4:+59539351 | None:intergenic |
| GGATTCGCGAGGAGAATCGA+TGG | 0.592474 | 1.4:-59539461 | MS.gene40012:CDS |
| TTACTCGGGTGAGGAGGACA+TGG | 0.594106 | 1.4:-59538953 | MS.gene40012:CDS |
| TCGAGGGAAAACGATGGTGT+AGG | 0.597452 | 1.4:-59536487 | None:intergenic |
| GATGCAGTTTATGGAATGGG+TGG | 0.603655 | 1.4:-59536568 | MS.gene40012:intron |
| AATGAGGTTTGAGAAATGAG+AGG | 0.606074 | 1.4:+59539592 | None:intergenic |
| AACAGGTTCTGAAGGAGAAG+AGG | 0.607825 | 1.4:-59539124 | MS.gene40012:CDS |
| GAATTCTCTAGCTTCTCAAG+TGG | 0.612169 | 1.4:-59538931 | MS.gene40012:CDS |
| AGAAGAAAAGGAATCTGTTG+AGG | 0.612843 | 1.4:-59539211 | MS.gene40012:CDS |
| CTGTGATGCAGTTTATGGAA+TGG | 0.616155 | 1.4:-59536572 | MS.gene40012:intron |
| AATTCTCTAGCTTCTCAAGT+GGG | 0.622250 | 1.4:-59538930 | MS.gene40012:CDS |
| ACAAAATGCCCATATTGTGA+AGG | 0.630638 | 1.4:-59536537 | MS.gene40012:CDS |
| ATGCAGTTTATGGAATGGGT+GGG | 0.631580 | 1.4:-59536567 | MS.gene40012:intron |
| TTCCGTGACAGAAATTTCAG+AGG | 0.631894 | 1.4:-59537534 | MS.gene40012:CDS |
| AGAGTGGTTCTAGTCAGAGG+AGG | 0.634878 | 1.4:-59539269 | MS.gene40012:CDS |
| GTGACGGTTATGGGAACGGT+AGG | 0.637180 | 1.4:+59539654 | None:intergenic |
| CTGCTGCTAAGGTTGAAAAG+AGG | 0.637914 | 1.4:-59539158 | MS.gene40012:CDS |
| GTTGTTCTTCACGGAGCCAG+CGG | 0.640610 | 1.4:+59539508 | None:intergenic |
| AATCACAAGTTATATGCCCT+AGG | 0.642779 | 1.4:+59536514 | None:intergenic |
| ATCGGGAATGGAGCAGTGAG+CGG | 0.642837 | 1.4:+59539542 | None:intergenic |
| AGATATAATTCGATGCTCGA+GGG | 0.643521 | 1.4:+59539380 | None:intergenic |
| ACCATCAAGACTTTCGACGA+AGG | 0.643727 | 1.4:-59537423 | MS.gene40012:CDS |
| GGAGCAACGGTGGATTCGCG+AGG | 0.645147 | 1.4:-59539472 | MS.gene40012:CDS |
| TGACGTCTAATCTTCTTGAG+AGG | 0.653400 | 1.4:-59538270 | MS.gene40012:CDS |
| ACGTCATGATCCCATCCTCA+GGG | 0.653901 | 1.4:+59538287 | None:intergenic |
| ACGAAGGTTAGAGTTGATAG+GGG | 0.654349 | 1.4:-59537407 | MS.gene40012:CDS |
| GAGGAGGTTAGTGCTTGAGG+AGG | 0.654807 | 1.4:-59539253 | MS.gene40012:CDS |
| GATAGGGGCAAGAACAAGGA+CGG | 0.659961 | 1.4:-59537392 | MS.gene40012:CDS |
| AGAACAACGATGGCTTCGCG+AGG | 0.677962 | 1.4:-59539493 | MS.gene40012:CDS |
| GGCTCCGTGAAGAACAACGA+TGG | 0.678007 | 1.4:-59539503 | MS.gene40012:CDS |
| GGAGTTTAGAGTTACAGTGA+CGG | 0.682062 | 1.4:+59539638 | None:intergenic |
| GTCTTCGTTGGGCATCCCTG+AGG | 0.685757 | 1.4:-59538302 | MS.gene40012:CDS |
| TTTGTGTCGAGGGAAAACGA+TGG | 0.877433 | 1.4:-59536493 | MS.gene40012:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCATACATAATATATTT+AGG | + | chr1.4:59539379-59539398 | None:intergenic | 10.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr1.4:59537676-59537695 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr1.4:59537675-59537694 | MS.gene40012:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr1.4:59537549-59537568 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr1.4:59537652-59537671 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTCATATGTTG+AGG | + | chr1.4:59538371-59538390 | None:intergenic | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr1.4:59537666-59537685 | MS.gene40012:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr1.4:59537589-59537608 | None:intergenic | 20.0% |
| !! | ATTATGTATGATATCAACTT+TGG | - | chr1.4:59539385-59539404 | MS.gene40012:CDS | 20.0% |
| !! | GATAAAGAATCAAATACAAA+TGG | + | chr1.4:59538563-59538582 | None:intergenic | 20.0% |
| !! | TTATATAACAAACATACCTT+CGG | + | chr1.4:59537982-59538001 | None:intergenic | 20.0% |
| !!! | TAAAACATTAGCAGATTTTT+TGG | + | chr1.4:59537959-59537978 | None:intergenic | 20.0% |
| !!! | TTGAATTTGAAGTTTAAGTT+CGG | + | chr1.4:59536756-59536775 | None:intergenic | 20.0% |
| ! | AAATATTGAACCTCAAGTAA+GGG | - | chr1.4:59539483-59539502 | MS.gene40012:CDS | 25.0% |
| ! | AATTTATAGGAGGAAAAATG+AGG | + | chr1.4:59536584-59536603 | None:intergenic | 25.0% |
| ! | ATATTTGGATATAAGGACTA+CGG | - | chr1.4:59537912-59537931 | MS.gene40012:intron | 25.0% |
| ! | CATAAATAATGACCATTACA+TGG | - | chr1.4:59539323-59539342 | MS.gene40012:CDS | 25.0% |
| ! | CTTTACATTGAATACATGTT+TGG | - | chr1.4:59538118-59538137 | MS.gene40012:intron | 25.0% |
| ! | GAAGAGAATAATAACTGTAT+TGG | - | chr1.4:59537314-59537333 | MS.gene40012:intron | 25.0% |
| ! | TAAGAGTAACCACAAAAATA+TGG | + | chr1.4:59538042-59538061 | None:intergenic | 25.0% |
| ! | TCAACTAAAAGTGAAAACAA+CGG | + | chr1.4:59538855-59538874 | None:intergenic | 25.0% |
| ! | TCATTATTTGACAGTTATCA+AGG | - | chr1.4:59538448-59538467 | MS.gene40012:intron | 25.0% |
| !! | ACCTAAAAGCTTAAACTTTT+AGG | + | chr1.4:59538482-59538501 | None:intergenic | 25.0% |
| !! | TCCTAAAAGTTTAAGCTTTT+AGG | - | chr1.4:59538478-59538497 | MS.gene40012:intron | 25.0% |
| !! | TTTAACTGTCATGATTTTGA+TGG | - | chr1.4:59537812-59537831 | MS.gene40012:intron | 25.0% |
| !!! | AGTATATGCTATGCTATTTT+TGG | - | chr1.4:59537785-59537804 | MS.gene40012:intron | 25.0% |
| !!! | TATTTTTGTTACTGTGTGTT+TGG | - | chr1.4:59537340-59537359 | MS.gene40012:intron | 25.0% |
| !!! | TTAACTGTCATGATTTTGAT+GGG | - | chr1.4:59537813-59537832 | MS.gene40012:intron | 25.0% |
| AACAAAACAACCTAGAGAAA+AGG | + | chr1.4:59538940-59538959 | None:intergenic | 30.0% | |
| AACTAAAAGTGAAAACAACG+GGG | + | chr1.4:59538853-59538872 | None:intergenic | 30.0% | |
| AAGGGAATTGAATTTATAGG+AGG | + | chr1.4:59536594-59536613 | None:intergenic | 30.0% | |
| AATGGCTATTGTGTGAATTT+GGG | - | chr1.4:59539200-59539219 | MS.gene40012:CDS | 30.0% | |
| ACATTCTGCAATCAAAGAAA+CGG | + | chr1.4:59539446-59539465 | None:intergenic | 30.0% | |
| AGAGGCTATATTTGGATATA+AGG | - | chr1.4:59537905-59537924 | MS.gene40012:intron | 30.0% | |
| AGTTCAGTTTGATGTGATAA+TGG | - | chr1.4:59539182-59539201 | MS.gene40012:CDS | 30.0% | |
| ATAGTAGTATTCATAACAGC+AGG | - | chr1.4:59539236-59539255 | MS.gene40012:CDS | 30.0% | |
| ATTAGAGCTTCACAAAATGA+CGG | + | chr1.4:59537399-59537418 | None:intergenic | 30.0% | |
| ATTGTTTAACAGTCTTCGTT+GGG | - | chr1.4:59537844-59537863 | MS.gene40012:intron | 30.0% | |
| CAAATATTGAACCTCAAGTA+AGG | - | chr1.4:59539482-59539501 | MS.gene40012:CDS | 30.0% | |
| CAACTAAAAGTGAAAACAAC+GGG | + | chr1.4:59538854-59538873 | None:intergenic | 30.0% | |
| CTTACTTGAGGTTCAATATT+TGG | + | chr1.4:59539484-59539503 | None:intergenic | 30.0% | |
| GAAAATCAACTGTGTGATAA+TGG | - | chr1.4:59539155-59539174 | MS.gene40012:CDS | 30.0% | |
| GGTAAGGGAATTGAATTTAT+AGG | + | chr1.4:59536597-59536616 | None:intergenic | 30.0% | |
| GTGAAATCTTGTGTTACAAT+AGG | - | chr1.4:59537159-59537178 | MS.gene40012:intron | 30.0% | |
| TAATGGCTATTGTGTGAATT+TGG | - | chr1.4:59539199-59539218 | MS.gene40012:CDS | 30.0% | |
| TATTGTTTAACAGTCTTCGT+TGG | - | chr1.4:59537843-59537862 | MS.gene40012:intron | 30.0% | |
| TCAAATAACTCGGATGAATT+GGG | + | chr1.4:59539054-59539073 | None:intergenic | 30.0% | |
| TCTTTATCAATCTGAGTTCT+AGG | - | chr1.4:59538575-59538594 | MS.gene40012:intron | 30.0% | |
| TGTTATTAGTATCTACACGT+TGG | - | chr1.4:59538221-59538240 | MS.gene40012:CDS | 30.0% | |
| TTCAAATAACTCGGATGAAT+TGG | + | chr1.4:59539055-59539074 | None:intergenic | 30.0% | |
| TTCATATCTTGTCTCTTCAT+TGG | + | chr1.4:59538540-59538559 | None:intergenic | 30.0% | |
| TTTATGAAGACCTAAATGTG+AGG | + | chr1.4:59539309-59539328 | None:intergenic | 30.0% | |
| ! | AAGAATTGATTTCCTTACTG+GGG | + | chr1.4:59538887-59538906 | None:intergenic | 30.0% |
| ! | CAAGAATTGATTTCCTTACT+GGG | + | chr1.4:59538888-59538907 | None:intergenic | 30.0% |
| ! | CTAAAATTGGGATTTTACTC+GGG | - | chr1.4:59537190-59537209 | MS.gene40012:intron | 30.0% |
| ! | GCTAAAATTGGGATTTTACT+CGG | - | chr1.4:59537189-59537208 | MS.gene40012:intron | 30.0% |
| ! | TCAAGAATTGATTTCCTTAC+TGG | + | chr1.4:59538889-59538908 | None:intergenic | 30.0% |
| ! | TGTAGCTTTTCTCAAAATCA+CGG | - | chr1.4:59537420-59537439 | MS.gene40012:CDS | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr1.4:59537758-59537777 | MS.gene40012:intron | 30.0% |
| !! | AACATGCAACCATATTTTTG+TGG | - | chr1.4:59538030-59538049 | MS.gene40012:intron | 30.0% |
| !! | ATAGGAAGCATTGCTAAAAT+TGG | - | chr1.4:59537177-59537196 | MS.gene40012:intron | 30.0% |
| !! | ATTTGGATTGATGATGACAT+TGG | + | chr1.4:59537464-59537483 | None:intergenic | 30.0% |
| !! | TAGGAAGCATTGCTAAAATT+GGG | - | chr1.4:59537178-59537197 | MS.gene40012:intron | 30.0% |
| !!! | AAGCTTAAACTTTTAGGATG+TGG | + | chr1.4:59538476-59538495 | None:intergenic | 30.0% |
| !!! | AGCTTAAACTTTTAGGATGT+GGG | + | chr1.4:59538475-59538494 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr1.4:59537757-59537776 | None:intergenic | 30.0% |
| AAGATATAATTCGATGCTCG+AGG | + | chr1.4:59536781-59536800 | None:intergenic | 35.0% | |
| AATCACAAGTTATATGCCCT+AGG | + | chr1.4:59539646-59539665 | None:intergenic | 35.0% | |
| AATGAGGTTTGAGAAATGAG+AGG | + | chr1.4:59536568-59536587 | None:intergenic | 35.0% | |
| ACAAAATGCCCATATTGTGA+AGG | - | chr1.4:59539620-59539639 | MS.gene40012:CDS | 35.0% | |
| ACAATGTCATCTTGTTGACA+AGG | - | chr1.4:59539017-59539036 | MS.gene40012:intron | 35.0% | |
| ACACTATAATAGCACCAAGT+TGG | + | chr1.4:59537488-59537507 | None:intergenic | 35.0% | |
| AGAAGAAAAGGAATCTGTTG+AGG | - | chr1.4:59536946-59536965 | MS.gene40012:intron | 35.0% | |
| AGATATAATTCGATGCTCGA+GGG | + | chr1.4:59536780-59536799 | None:intergenic | 35.0% | |
| AGATGAAGTGGAAGAAGAAA+AGG | - | chr1.4:59536934-59536953 | MS.gene40012:intron | 35.0% | |
| ATGAAATGCCTTCAATGTTC+TGG | - | chr1.4:59538792-59538811 | MS.gene40012:intron | 35.0% | |
| ATGAGGTTTGAGAAATGAGA+GGG | + | chr1.4:59536567-59536586 | None:intergenic | 35.0% | |
| CATCAATCCAAATTCCAACT+TGG | - | chr1.4:59537471-59537490 | MS.gene40012:CDS | 35.0% | |
| GACTTGAGACTTGAGATATA+TGG | + | chr1.4:59539418-59539437 | None:intergenic | 35.0% | |
| GCTCAGCATCTTTATTATAC+TGG | - | chr1.4:59539350-59539369 | MS.gene40012:CDS | 35.0% | |
| GTTAGTCAATCCACTCAAAT+TGG | - | chr1.4:59539101-59539120 | MS.gene40012:intron | 35.0% | |
| TCTAGTTAAGCCAATTTGAG+TGG | + | chr1.4:59539114-59539133 | None:intergenic | 35.0% | |
| TCTTCTTGAGAGGCTATATT+TGG | - | chr1.4:59537897-59537916 | MS.gene40012:intron | 35.0% | |
| TCTTGATGGAAATCTGAACA+AGG | - | chr1.4:59538325-59538344 | MS.gene40012:intron | 35.0% | |
| TCTTTGATTGCAGAATGTGA+TGG | - | chr1.4:59539448-59539467 | MS.gene40012:CDS | 35.0% | |
| TGAAATGCCTTCAATGTTCT+GGG | - | chr1.4:59538793-59538812 | MS.gene40012:intron | 35.0% | |
| TGAATATATAAGCCCCAGTA+AGG | - | chr1.4:59538872-59538891 | MS.gene40012:intron | 35.0% | |
| TGATTTCAGCAAATTCATGG+TGG | - | chr1.4:59537371-59537390 | MS.gene40012:CDS | 35.0% | |
| TGTGATGCAGTTTATGGAAT+GGG | - | chr1.4:59539586-59539605 | MS.gene40012:CDS | 35.0% | |
| TTGTTACTGTGTGTTTGGAT+TGG | - | chr1.4:59537345-59537364 | MS.gene40012:CDS | 35.0% | |
| ! | AATAGCACCAAGTTGGAATT+TGG | + | chr1.4:59537481-59537500 | None:intergenic | 35.0% |
| ! | AATTCTCTAGCTTCTCAAGT+GGG | - | chr1.4:59537227-59537246 | MS.gene40012:intron | 35.0% |
| ! | ATAACTTGTGATTTGTGTCG+AGG | - | chr1.4:59539653-59539672 | MS.gene40012:CDS | 35.0% |
| ! | ATCTGCTAATGTTTTACCGA+AGG | - | chr1.4:59537963-59537982 | MS.gene40012:intron | 35.0% |
| ! | CTCGAGGTATTCAAATAACT+CGG | + | chr1.4:59539064-59539083 | None:intergenic | 35.0% |
| ! | GGTGTTGAAGGATAAGAATT+TGG | - | chr1.4:59536859-59536878 | MS.gene40012:intron | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr1.4:59537627-59537646 | None:intergenic | 35.0% |
| ! | TAACTTGTGATTTGTGTCGA+GGG | - | chr1.4:59539654-59539673 | MS.gene40012:CDS | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr1.4:59537623-59537642 | None:intergenic | 35.0% |
| ! | TTTGAGAAATGAGAGGGTTT+TGG | + | chr1.4:59536561-59536580 | None:intergenic | 35.0% |
| !! | AACCTCTGAAATTTCTGTCA+CGG | + | chr1.4:59538628-59538647 | None:intergenic | 35.0% |
| !! | AAGAATTTGGTTCTTGAGAG+TGG | - | chr1.4:59536872-59536891 | MS.gene40012:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr1.4:59537523-59537542 | None:intergenic | 35.0% |
| !! | GAGTTCTAGGAAGTTGAAAA+TGG | - | chr1.4:59538588-59538607 | MS.gene40012:intron | 35.0% |
| !! | GTACTTTTTGCTCTTGAGTA+CGG | - | chr1.4:59538005-59538024 | MS.gene40012:intron | 35.0% |
| !! | TGAGAGTATACCTTTTCTCT+AGG | - | chr1.4:59538927-59538946 | MS.gene40012:CDS | 35.0% |
| !!! | TTCACATGGTTTTTTTCTCG+AGG | + | chr1.4:59539080-59539099 | None:intergenic | 35.0% |
| AACTCGGATGAATTGGGATT+AGG | + | chr1.4:59539048-59539067 | None:intergenic | 40.0% | |
| AAGGAGGAAAACTCTTGGAT+GGG | + | chr1.4:59538694-59538713 | None:intergenic | 40.0% | |
| AGAAGAGGTTCAAAAGTTGC+AGG | - | chr1.4:59537048-59537067 | MS.gene40012:intron | 40.0% | |
| AGAATCGATGGAATCGTGAA+CGG | - | chr1.4:59536708-59536727 | MS.gene40012:intron | 40.0% | |
| AGAGTTACAGTGACGGTTAT+GGG | + | chr1.4:59536515-59536534 | None:intergenic | 40.0% | |
| AGTATTCATAACAGCAGGCA+TGG | - | chr1.4:59539241-59539260 | MS.gene40012:CDS | 40.0% | |
| ATGAAACACTGACAGAGACA+TGG | + | chr1.4:59538262-59538281 | None:intergenic | 40.0% | |
| ATGCAGTTTATGGAATGGGT+GGG | - | chr1.4:59539590-59539609 | MS.gene40012:CDS | 40.0% | |
| CGGTGATTTCAGCAAATTCA+TGG | - | chr1.4:59537368-59537387 | MS.gene40012:CDS | 40.0% | |
| CTACAAAATCTACTACTCCC+AGG | + | chr1.4:59538510-59538529 | None:intergenic | 40.0% | |
| CTGTGATGCAGTTTATGGAA+TGG | - | chr1.4:59539585-59539604 | MS.gene40012:CDS | 40.0% | |
| GAGATCTGTGATGCAGTTTA+TGG | - | chr1.4:59539580-59539599 | MS.gene40012:CDS | 40.0% | |
| GATAGATGCCATGTCTCTAA+GGG | - | chr1.4:59538286-59538305 | MS.gene40012:CDS | 40.0% | |
| GGAATCTGTTGAGGTTGTAA+AGG | - | chr1.4:59536955-59536974 | MS.gene40012:intron | 40.0% | |
| GGTGGTTTATCCTCACATTT+AGG | - | chr1.4:59539296-59539315 | MS.gene40012:CDS | 40.0% | |
| GTCAACAAGATGACATTGTG+AGG | + | chr1.4:59539016-59539035 | None:intergenic | 40.0% | |
| TAGAGTTACAGTGACGGTTA+TGG | + | chr1.4:59536516-59536535 | None:intergenic | 40.0% | |
| TGACGTCTAATCTTCTTGAG+AGG | - | chr1.4:59537887-59537906 | MS.gene40012:intron | 40.0% | |
| TGAGGTTGTAAAGGAGATTG+TGG | - | chr1.4:59536964-59536983 | MS.gene40012:intron | 40.0% | |
| TGATAGATGCCATGTCTCTA+AGG | - | chr1.4:59538285-59538304 | MS.gene40012:CDS | 40.0% | |
| TGATGACATTGGCAGAATCA+CGG | + | chr1.4:59537453-59537472 | None:intergenic | 40.0% | |
| TGGATTGACTAACGTTCACA+TGG | + | chr1.4:59539094-59539113 | None:intergenic | 40.0% | |
| TTCCGTGACAGAAATTTCAG+AGG | - | chr1.4:59538623-59538642 | MS.gene40012:intron | 40.0% | |
| ! | AGTGTTGTTGCTACATAGCA+TGG | + | chr1.4:59538100-59538119 | None:intergenic | 40.0% |
| ! | ATCCAAGAGTTTTCCTCCTT+GGG | - | chr1.4:59538694-59538713 | MS.gene40012:intron | 40.0% |
| ! | CAAGGTATCTTGTTGTGTAC+AGG | - | chr1.4:59538816-59538835 | MS.gene40012:intron | 40.0% |
| ! | GAATTCTCTAGCTTCTCAAG+TGG | - | chr1.4:59537226-59537245 | MS.gene40012:intron | 40.0% |
| ! | GGAGTTTAGAGTTACAGTGA+CGG | + | chr1.4:59536522-59536541 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr1.4:59537624-59537643 | None:intergenic | 40.0% |
| ! | GTGTTGTTGCTACATAGCAT+GGG | + | chr1.4:59538099-59538118 | None:intergenic | 40.0% |
| ! | TTACTGTGTGTTTGGATTGG+CGG | - | chr1.4:59537348-59537367 | MS.gene40012:CDS | 40.0% |
| ! | TTTTCCTCCTTGGGGAAAAT+CGG | - | chr1.4:59538703-59538722 | MS.gene40012:intron | 40.0% |
| !! | ACGAAGGTTAGAGTTGATAG+GGG | - | chr1.4:59538750-59538769 | MS.gene40012:intron | 40.0% |
| !! | AGAAATGAGAGGGTTTTGGT+GGG | + | chr1.4:59536557-59536576 | None:intergenic | 40.0% |
| !! | ATTGCAGAATGTGATGGATC+TGG | - | chr1.4:59539454-59539473 | MS.gene40012:CDS | 40.0% |
| !! | CTAAGGGATTGGTCAATGAT+TGG | - | chr1.4:59538302-59538321 | MS.gene40012:CDS | 40.0% |
| !! | GACGAAGGTTAGAGTTGATA+GGG | - | chr1.4:59538749-59538768 | MS.gene40012:intron | 40.0% |
| !! | TGGTCAATGATTGGTCTTGA+TGG | - | chr1.4:59538311-59538330 | MS.gene40012:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1.4:59537762-59537781 | MS.gene40012:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1.4:59537781-59537762 | None:intergenic | 40.0% |
| ACCATCAAGACTTTCGACGA+AGG | - | chr1.4:59538734-59538753 | MS.gene40012:intron | 45.0% | |
| ACCTTCGTCGAAAGTCTTGA+TGG | + | chr1.4:59538738-59538757 | None:intergenic | 45.0% | |
| AGAGGTTCAGCAAAAAGTCG+TGG | - | chr1.4:59538641-59538660 | MS.gene40012:intron | 45.0% | |
| AGAGTATGAGAAGCTCCAGT+TGG | + | chr1.4:59538966-59538985 | None:intergenic | 45.0% | |
| CAAGGAGGAAAACTCTTGGA+TGG | + | chr1.4:59538695-59538714 | None:intergenic | 45.0% | |
| CTGCTGCTAAGGTTGAAAAG+AGG | - | chr1.4:59536999-59537018 | MS.gene40012:intron | 45.0% | |
| GAAGCCATCGTTGTTCTTCA+CGG | + | chr1.4:59536661-59536680 | None:intergenic | 45.0% | |
| GAATCGATGGAATCGTGAAC+GGG | - | chr1.4:59536709-59536728 | MS.gene40012:intron | 45.0% | |
| GAGGTTCAGCAAAAAGTCGT+GGG | - | chr1.4:59538642-59538661 | MS.gene40012:intron | 45.0% | |
| GATGCAGTTTATGGAATGGG+TGG | - | chr1.4:59539589-59539608 | MS.gene40012:CDS | 45.0% | |
| GCACAACTATCCCTTACTTG+AGG | + | chr1.4:59539496-59539515 | None:intergenic | 45.0% | |
| GCAGCTTCATTGGAGTCATT+GGG | + | chr1.4:59539267-59539286 | None:intergenic | 45.0% | |
| GGAGGAAAAGGAAGATGAAG+TGG | - | chr1.4:59536922-59536941 | MS.gene40012:intron | 45.0% | |
| GGATGAATTGGGATTAGGAG+AGG | + | chr1.4:59539043-59539062 | None:intergenic | 45.0% | |
| GTTAGTGCTTGAGGAGGAAA+AGG | - | chr1.4:59536910-59536929 | MS.gene40012:intron | 45.0% | |
| TACAGTGACGGTTATGGGAA+CGG | + | chr1.4:59536510-59536529 | None:intergenic | 45.0% | |
| TACCTTGCCCAGAACATTGA+AGG | + | chr1.4:59538803-59538822 | None:intergenic | 45.0% | |
| TCGGAAGACGTAGAAGAAGA+AGG | + | chr1.4:59536809-59536828 | None:intergenic | 45.0% | |
| TCTACACGTTGGTATCGTGT+CGG | - | chr1.4:59538232-59538251 | MS.gene40012:CDS | 45.0% | |
| TGACCAATCCCTTAGAGACA+TGG | + | chr1.4:59538297-59538316 | None:intergenic | 45.0% | |
| TGCTGAGCTCTTCCATGTAA+TGG | + | chr1.4:59539338-59539357 | None:intergenic | 45.0% | |
| TGTTGAGAAACCTGCTGCTA+AGG | - | chr1.4:59536988-59537007 | MS.gene40012:intron | 45.0% | |
| TTCAATGTGACCACATGTGC+TGG | + | chr1.4:59538181-59538200 | None:intergenic | 45.0% | |
| TTCTTCTACGTCTTCCGATG+CGG | - | chr1.4:59536811-59536830 | MS.gene40012:intron | 45.0% | |
| TTTGTGTCGAGGGAAAACGA+TGG | - | chr1.4:59539664-59539683 | MS.gene40012:CDS | 45.0% | |
| ! | AAGAGGACTGTTTTGCGAAC+AGG | - | chr1.4:59537016-59537035 | MS.gene40012:intron | 45.0% |
| ! | ATGCCATGTCTCTAAGGGAT+TGG | - | chr1.4:59538291-59538310 | MS.gene40012:CDS | 45.0% |
| ! | ATTGGGATTTTACTCGGGTG+AGG | - | chr1.4:59537195-59537214 | MS.gene40012:intron | 45.0% |
| ! | CATCCAAGAGTTTTCCTCCT+TGG | - | chr1.4:59538693-59538712 | MS.gene40012:intron | 45.0% |
| ! | CGACGAAGGTTAGAGTTGAT+AGG | - | chr1.4:59538748-59538767 | MS.gene40012:intron | 45.0% |
| ! | CTCTTTTCAACCTTAGCAGC+AGG | + | chr1.4:59537001-59537020 | None:intergenic | 45.0% |
| ! | GATGGGATGCTTCTGTTTCT+TGG | + | chr1.4:59538677-59538696 | None:intergenic | 45.0% |
| ! | TCCAAGAGTTTTCCTCCTTG+GGG | - | chr1.4:59538695-59538714 | MS.gene40012:intron | 45.0% |
| !! | AACAGGTTCTGAAGGAGAAG+AGG | - | chr1.4:59537033-59537052 | MS.gene40012:intron | 45.0% |
| !! | AAGCTTTTAGGTGCAAGCCT+GGG | - | chr1.4:59538490-59538509 | MS.gene40012:intron | 45.0% |
| !! | AGTTGATAGGGGCAAGAACA+AGG | - | chr1.4:59538761-59538780 | MS.gene40012:intron | 45.0% |
| !! | GAAATGAGAGGGTTTTGGTG+GGG | + | chr1.4:59536556-59536575 | None:intergenic | 45.0% |
| !! | GAGAAATGAGAGGGTTTTGG+TGG | + | chr1.4:59536558-59536577 | None:intergenic | 45.0% |
| !! | GGTTGTTTTGTTCCTCCAAC+TGG | - | chr1.4:59538948-59538967 | MS.gene40012:CDS | 45.0% |
| !! | GTTTTGCGAACAGGTTCTGA+AGG | - | chr1.4:59537025-59537044 | MS.gene40012:intron | 45.0% |
| !! | TAAGCTTTTAGGTGCAAGCC+TGG | - | chr1.4:59538489-59538508 | MS.gene40012:intron | 45.0% |
| !! | TTGAGAGTGGTTCTAGTCAG+AGG | - | chr1.4:59536885-59536904 | MS.gene40012:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1.4:59537761-59537780 | MS.gene40012:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1.4:59537780-59537761 | None:intergenic | 45.0% |
| AATGGAGCAGTGAGCGGTAA+GGG | + | chr1.4:59536612-59536631 | None:intergenic | 50.0% | |
| ACGTCATGATCCCATCCTCA+GGG | + | chr1.4:59537873-59537892 | None:intergenic | 50.0% | |
| CAATGAAGCTGCGAGAGTTG+AGG | - | chr1.4:59539275-59539294 | MS.gene40012:CDS | 50.0% | |
| CGATGCGGTTTCGAATGTTG+CGG | - | chr1.4:59536826-59536845 | MS.gene40012:intron | 50.0% | |
| CGCAACATTCGAAACCGCAT+CGG | + | chr1.4:59536828-59536847 | None:intergenic | 50.0% | |
| CGCAGCTTCATTGGAGTCAT+TGG | + | chr1.4:59539268-59539287 | None:intergenic | 50.0% | |
| CTACACAACACCAGCACATG+TGG | - | chr1.4:59538168-59538187 | MS.gene40012:intron | 50.0% | |
| CTACACGTTGGTATCGTGTC+GGG | - | chr1.4:59538233-59538252 | MS.gene40012:CDS | 50.0% | |
| CTCAACTCTCGCAGCTTCAT+TGG | + | chr1.4:59539277-59539296 | None:intergenic | 50.0% | |
| GATAGGGGCAAGAACAAGGA+CGG | - | chr1.4:59538765-59538784 | MS.gene40012:intron | 50.0% | |
| GCCCATATTGTGAAGGCCTA+GGG | - | chr1.4:59539627-59539646 | MS.gene40012:CDS | 50.0% | |
| GCCCTAGGCCTTCACAATAT+GGG | + | chr1.4:59539631-59539650 | None:intergenic | 50.0% | |
| GTATGAGAAGCTCCAGTTGG+AGG | + | chr1.4:59538963-59538982 | None:intergenic | 50.0% | |
| GTTTATGGAATGGGTGGGTG+AGG | - | chr1.4:59539595-59539614 | MS.gene40012:CDS | 50.0% | |
| TCAGAGGAGGTTAGTGCTTG+AGG | - | chr1.4:59536901-59536920 | MS.gene40012:intron | 50.0% | |
| TCCCCAAGGAGGAAAACTCT+TGG | + | chr1.4:59538699-59538718 | None:intergenic | 50.0% | |
| TGCCCATATTGTGAAGGCCT+AGG | - | chr1.4:59539626-59539645 | MS.gene40012:CDS | 50.0% | |
| TGCCCTAGGCCTTCACAATA+TGG | + | chr1.4:59539632-59539651 | None:intergenic | 50.0% | |
| TTTGGTGGGGAAAGAGAGTG+TGG | + | chr1.4:59536543-59536562 | None:intergenic | 50.0% | |
| ! | TGCCTTCAATGTTCTGGGCA+AGG | - | chr1.4:59538798-59538817 | MS.gene40012:intron | 50.0% |
| !! | AGAGTGGTTCTAGTCAGAGG+AGG | - | chr1.4:59536888-59536907 | MS.gene40012:intron | 50.0% |
| !! | CACATGTGCTGGTGTTGTGT+AGG | + | chr1.4:59538170-59538189 | None:intergenic | 50.0% |
| !! | TGCTGGTGTTGTGTAGGTGA+TGG | + | chr1.4:59538164-59538183 | None:intergenic | 50.0% |
| AGAACAACGATGGCTTCGCG+AGG | - | chr1.4:59536664-59536683 | MS.gene40012:intron | 55.0% | |
| ATCGGGAATGGAGCAGTGAG+CGG | + | chr1.4:59536618-59536637 | None:intergenic | 55.0% | |
| CCTCCTTGGGGAAAATCGGT+GGG | - | chr1.4:59538707-59538726 | MS.gene40012:intron | 55.0% | |
| CTGAGCGTGCTGTGAAGACT+TGG | - | chr1.4:59537251-59537270 | MS.gene40012:intron | 55.0% | |
| GAATGGAGCAGTGAGCGGTA+AGG | + | chr1.4:59536613-59536632 | None:intergenic | 55.0% | |
| GAATGTTGCGGCGTTGCTAC+AGG | - | chr1.4:59536838-59536857 | MS.gene40012:intron | 55.0% | |
| GACGTCATGATCCCATCCTC+AGG | + | chr1.4:59537874-59537893 | None:intergenic | 55.0% | |
| GAGGAGGTTAGTGCTTGAGG+AGG | - | chr1.4:59536904-59536923 | MS.gene40012:intron | 55.0% | |
| GGATTCGCGAGGAGAATCGA+TGG | - | chr1.4:59536696-59536715 | MS.gene40012:CDS | 55.0% | |
| GGCTCCGTGAAGAACAACGA+TGG | - | chr1.4:59536654-59536673 | MS.gene40012:intron | 55.0% | |
| GTGACGGTTATGGGAACGGT+AGG | + | chr1.4:59536506-59536525 | None:intergenic | 55.0% | |
| GTGTTCTTCGCGATCGGGAA+TGG | + | chr1.4:59536630-59536649 | None:intergenic | 55.0% | |
| GTTGTTCTTCACGGAGCCAG+CGG | + | chr1.4:59536652-59536671 | None:intergenic | 55.0% | |
| TCCTCCTTGGGGAAAATCGG+TGG | - | chr1.4:59538706-59538725 | MS.gene40012:intron | 55.0% | |
| TGAAGCTGCGAGAGTTGAGG+TGG | - | chr1.4:59539278-59539297 | MS.gene40012:CDS | 55.0% | |
| TTACTCGGGTGAGGAGGACA+TGG | - | chr1.4:59537204-59537223 | MS.gene40012:intron | 55.0% | |
| ! | GGGATTTTACTCGGGTGAGG+AGG | - | chr1.4:59537198-59537217 | MS.gene40012:intron | 55.0% |
| !! | GGCGTTGCTACAGGTGTTGA+AGG | - | chr1.4:59536847-59536866 | MS.gene40012:intron | 55.0% |
| !!! | CTTCCCACCGATTTTCCCCA+AGG | + | chr1.4:59538713-59538732 | None:intergenic | 55.0% |
| CAGCGGTGTTCTTCGCGATC+GGG | + | chr1.4:59536635-59536654 | None:intergenic | 60.0% | |
| CCAGCGGTGTTCTTCGCGAT+CGG | + | chr1.4:59536636-59536655 | None:intergenic | 60.0% | |
| CGTTGGGCATCCCTGAGGAT+GGG | - | chr1.4:59537860-59537879 | MS.gene40012:intron | 60.0% | |
| GATGGCTTCGCGAGGAGCAA+CGG | - | chr1.4:59536672-59536691 | MS.gene40012:intron | 60.0% | |
| GTCTTCGTTGGGCATCCCTG+AGG | - | chr1.4:59537855-59537874 | MS.gene40012:intron | 60.0% | |
| TCGTTGGGCATCCCTGAGGA+TGG | - | chr1.4:59537859-59537878 | MS.gene40012:intron | 60.0% | |
| !!! | CCCACCGATTTTCCCCAAGG+AGG | + | chr1.4:59538710-59538729 | None:intergenic | 60.0% |
| CCGATCGCGAAGAACACCGC+TGG | - | chr1.4:59536633-59536652 | MS.gene40012:intron | 65.0% | |
| ! | GGAGCAACGGTGGATTCGCG+AGG | - | chr1.4:59536685-59536704 | MS.gene40012:CDS | 65.0% |
| GGCTTCGCGAGGAGCAACGG+TGG | - | chr1.4:59536675-59536694 | MS.gene40012:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59536488 | 59539691 | 59536488 | ID=MS.gene40012 |
| chr1.4 | mRNA | 59536488 | 59539691 | 59536488 | ID=MS.gene40012.t1;Parent=MS.gene40012 |
| chr1.4 | exon | 59539110 | 59539691 | 59539110 | ID=MS.gene40012.t1.exon1;Parent=MS.gene40012.t1 |
| chr1.4 | CDS | 59539110 | 59539691 | 59539110 | ID=cds.MS.gene40012.t1;Parent=MS.gene40012.t1 |
| chr1.4 | exon | 59538903 | 59538998 | 59538903 | ID=MS.gene40012.t1.exon2;Parent=MS.gene40012.t1 |
| chr1.4 | CDS | 59538903 | 59538998 | 59538903 | ID=cds.MS.gene40012.t1;Parent=MS.gene40012.t1 |
| chr1.4 | exon | 59538195 | 59538323 | 59538195 | ID=MS.gene40012.t1.exon3;Parent=MS.gene40012.t1 |
| chr1.4 | CDS | 59538195 | 59538323 | 59538195 | ID=cds.MS.gene40012.t1;Parent=MS.gene40012.t1 |
| chr1.4 | exon | 59537342 | 59537582 | 59537342 | ID=MS.gene40012.t1.exon4;Parent=MS.gene40012.t1 |
| chr1.4 | CDS | 59537342 | 59537582 | 59537342 | ID=cds.MS.gene40012.t1;Parent=MS.gene40012.t1 |
| chr1.4 | exon | 59536681 | 59536718 | 59536681 | ID=MS.gene40012.t1.exon5;Parent=MS.gene40012.t1 |
| chr1.4 | CDS | 59536681 | 59536718 | 59536681 | ID=cds.MS.gene40012.t1;Parent=MS.gene40012.t1 |
| chr1.4 | exon | 59536488 | 59536583 | 59536488 | ID=MS.gene40012.t1.exon6;Parent=MS.gene40012.t1 |
| chr1.4 | CDS | 59536488 | 59536583 | 59536488 | ID=cds.MS.gene40012.t1;Parent=MS.gene40012.t1 |
| Gene Sequence |
| Protein sequence |
