AlfalfaGEDB | MS.gene40051

M. sativa cultivar XinJiangDaYe / MS.gene40051

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40051.t1	XP_013468641.1	99.2	126	1	0	1	126	1	126	1.70E-65	258.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40051.t1	Q8L8Q8	82.4	125	22	0	1	125	1	125	2.2e-58	226.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40051.t1	A0A072VML2	99.2	126	1	0	1	126	1	126	1.2e-65	258.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene056314	MS.gene40051	0.801711	7.91E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40051.t1	MTR_1g073620	99.206	126	1	0	1	126	1	126	5.01e-90	256

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40051.t1	AT5G64816	82.500	120	21	1	120	1	120	2.39e-74	217
MS.gene40051.t1	AT5G64816	82.500	120	21	1	120	1	120	2.39e-74	217
MS.gene40051.t1	AT5G64816	82.500	120	21	1	120	1	120	2.39e-74	217
MS.gene40051.t1	AT5G64816	82.500	120	21	1	120	1	120	2.39e-74	217

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Find 24 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAATGCAGAGGAGCAA+AGG	0.541153	1.4:-60128667	MS.gene40051:CDS
AAAGGGTCTGCACTTCAAAG+AGG	0.655293	1.4:-60128592	MS.gene40051:CDS
AAGCATTTAGAGTTAAGAAA+AGG	0.483524	1.4:-60128685	MS.gene40051:CDS
ACCAACATCAAGTACCTAAT+TGG	0.274343	1.4:-60128451	MS.gene40051:CDS
AGACATGTGTCATTCCAATT+AGG	0.386451	1.4:+60128437	None:intergenic
AGAGTGCAAGGGGAAGAGAA+AGG	0.552353	1.4:-60128640	MS.gene40051:CDS
AGATATTTGGTGGTCACTTT+TGG	0.138181	1.4:-60128738	MS.gene40051:CDS
AGCAAAGGTTGAAGAGTGCA+AGG	0.518677	1.4:-60128652	MS.gene40051:CDS
AGTTAAGAAAAGGAATGCAG+AGG	0.619043	1.4:-60128675	MS.gene40051:CDS
ATTGGAATGACACATGTCTT+AGG	0.381625	1.4:-60128433	MS.gene40051:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAAAGAGGATGTTGAAAA+AGG	-	chr1.4:60128549-60128568	MS.gene40051:CDS	30.0%
AAGAGGATGTTGAAAAAGGT+TGG	-	chr1.4:60128553-60128572	MS.gene40051:CDS	35.0%
ACCAACATCAAGTACCTAAT+TGG	-	chr1.4:60128677-60128696	MS.gene40051:CDS	35.0%
AGTTAAGAAAAGGAATGCAG+AGG	-	chr1.4:60128453-60128472	MS.gene40051:CDS	35.0%
ATTGGAATGACACATGTCTT+AGG	-	chr1.4:60128695-60128714	MS.gene40051:CDS	35.0%
CAAACAGTAACACAAGTATC+AGG	+	chr1.4:60128601-60128620	None:intergenic	35.0%
GTAACACAAGTATCAGGAAT+TGG	+	chr1.4:60128595-60128614	None:intergenic	35.0%
TCCAATTAGGTACTTGATGT+TGG	+	chr1.4:60128681-60128700	None:intergenic	35.0%
AAAGGAATGCAGAGGAGCAA+AGG	-	chr1.4:60128461-60128480	MS.gene40051:CDS	45.0%
AAAGGGTCTGCACTTCAAAG+AGG	-	chr1.4:60128536-60128555	MS.gene40051:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	60128385	60128765	60128385	ID=MS.gene40051
chr1.4	mRNA	60128385	60128765	60128385	ID=MS.gene40051.t1;Parent=MS.gene40051
chr1.4	exon	60128385	60128765	60128385	ID=MS.gene40051.t1.exon1;Parent=MS.gene40051.t1
chr1.4	CDS	60128385	60128765	60128385	ID=cds.MS.gene40051.t1;Parent=MS.gene40051.t1

Gene Sequence

>MS.gene40051

ATGGGAGATATTTGGTGGTCACTTTTGGGGGCAGCAGTCCCTGTCGTTGTTGCAGGACAAGCATTTAGAGTTAAGAAAAGGAATGCAGAGGAGCAAAGGTTGAAGAGTGCAAGGGGAAGAGAAAGGAGTTCTGATGAAATTTTCGTTTGTGAAAGGGTCTGCACTTCAAAGAGGATGTTGAAAAAGGTTGGCTCTTTCTCAAAAGATCCAATTCCTGATACTTGTGTTACTGTTTGTGGTGTGTCTGATCTTGACGCGTGTGCTGAAGCTTGTGCTCGTACGGTTTGTATTAACCAACATCAAGTACCTAATTGGAATGACACATGTCTTAGGAGGTGTCAGAGTGAATGCTTGAAACTCTCTTCTCAGTCTTCTCAGTAG

Protein sequence

>MS.gene40051.t1

MGDIWWSLLGAAVPVVVAGQAFRVKKRNAEEQRLKSARGRERSSDEIFVCERVCTSKRMLKKVGSFSKDPIPDTCVTVCGVSDLDACAEACARTVCINQHQVPNWNDTCLRRCQSECLKLSSQSSQ