Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40203.t1 | XP_003603231.1 | 97.7 | 43 | 1 | 0 | 64 | 106 | 156 | 198 | 1.10E-13 | 87 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40203.t1 | Q9ZUF4 | 86.0 | 43 | 6 | 0 | 64 | 106 | 161 | 203 | 7.8e-13 | 75.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40203.t1 | G7J941 | 97.7 | 43 | 1 | 0 | 64 | 106 | 156 | 198 | 7.7e-14 | 87.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054943 | MS.gene40203 | 0.806694 | 7.26E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene40203 | 0.806986 | 6.30E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40203.t1 | MTR_3g105320 | 97.674 | 43 | 1 | 0 | 64 | 106 | 156 | 198 | 1.32e-21 | 91.3 |
| MS.gene40203.t1 | MTR_1g015020 | 90.698 | 43 | 4 | 0 | 64 | 106 | 156 | 198 | 4.99e-20 | 87.0 |
| MS.gene40203.t1 | MTR_2g041960 | 83.721 | 43 | 7 | 0 | 64 | 106 | 153 | 195 | 9.64e-19 | 84.0 |
| MS.gene40203.t1 | MTR_2g020360 | 97.561 | 41 | 1 | 0 | 164 | 204 | 99 | 139 | 1.71e-18 | 78.6 |
| MS.gene40203.t1 | MTR_2g020360 | 97.561 | 41 | 1 | 0 | 164 | 204 | 99 | 139 | 1.71e-18 | 78.6 |
| MS.gene40203.t1 | MTR_2g020360 | 97.561 | 41 | 1 | 0 | 164 | 204 | 99 | 139 | 2.11e-18 | 78.2 |
| MS.gene40203.t1 | MTR_4g125260 | 81.395 | 43 | 8 | 0 | 64 | 106 | 159 | 201 | 3.87e-18 | 82.0 |
| MS.gene40203.t1 | MTR_5g038450 | 83.721 | 43 | 6 | 1 | 64 | 106 | 213 | 254 | 1.67e-15 | 74.7 |
| MS.gene40203.t1 | MTR_4g115120 | 81.395 | 43 | 7 | 1 | 64 | 106 | 188 | 229 | 1.74e-15 | 74.3 |
| MS.gene40203.t1 | MTR_8g469230 | 83.721 | 43 | 6 | 1 | 64 | 106 | 209 | 250 | 2.05e-15 | 74.3 |
| MS.gene40203.t1 | MTR_7g009320 | 81.395 | 43 | 7 | 1 | 64 | 106 | 200 | 241 | 4.07e-15 | 73.6 |
| MS.gene40203.t1 | MTR_6g011330 | 81.395 | 43 | 7 | 1 | 64 | 106 | 210 | 251 | 5.42e-15 | 73.2 |
| MS.gene40203.t1 | MTR_5g026370 | 76.744 | 43 | 9 | 1 | 64 | 106 | 166 | 207 | 1.10e-14 | 72.0 |
| MS.gene40203.t1 | MTR_8g020920 | 74.419 | 43 | 11 | 0 | 64 | 106 | 153 | 195 | 1.91e-14 | 71.2 |
| MS.gene40203.t1 | MTR_4g118750 | 85.366 | 41 | 6 | 0 | 164 | 204 | 83 | 123 | 2.07e-14 | 68.2 |
| MS.gene40203.t1 | MTR_4g076200 | 90.909 | 33 | 3 | 0 | 29 | 61 | 5 | 37 | 7.16e-14 | 66.2 |
| MS.gene40203.t1 | MTR_4g076200 | 93.750 | 32 | 2 | 0 | 29 | 60 | 46 | 77 | 9.02e-14 | 67.0 |
| MS.gene40203.t1 | MTR_6g011570 | 72.093 | 43 | 12 | 0 | 64 | 106 | 144 | 186 | 1.73e-13 | 68.6 |
| MS.gene40203.t1 | MTR_3g462840 | 72.093 | 43 | 12 | 0 | 64 | 106 | 141 | 183 | 1.99e-13 | 68.6 |
| MS.gene40203.t1 | MTR_5g038870 | 69.767 | 43 | 13 | 0 | 64 | 106 | 153 | 195 | 2.45e-13 | 68.2 |
| MS.gene40203.t1 | MTR_7g074610 | 72.093 | 43 | 12 | 0 | 64 | 106 | 165 | 207 | 2.71e-13 | 68.2 |
| MS.gene40203.t1 | MTR_7g061660 | 73.333 | 45 | 10 | 1 | 64 | 106 | 150 | 194 | 8.06e-13 | 66.6 |
| MS.gene40203.t1 | MTR_2g096970 | 64.151 | 53 | 17 | 1 | 64 | 114 | 138 | 190 | 1.83e-12 | 65.5 |
| MS.gene40203.t1 | MTR_2g096950 | 71.111 | 45 | 11 | 1 | 64 | 106 | 151 | 195 | 2.41e-12 | 65.1 |
| MS.gene40203.t1 | MTR_5g009020 | 79.487 | 39 | 7 | 1 | 29 | 67 | 46 | 83 | 2.93e-12 | 62.8 |
| MS.gene40203.t1 | MTR_5g079840 | 66.667 | 48 | 14 | 1 | 64 | 109 | 152 | 199 | 3.14e-12 | 65.1 |
| MS.gene40203.t1 | MTR_8g088410 | 62.791 | 43 | 16 | 0 | 64 | 106 | 147 | 189 | 1.12e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40203.t1 | AT2G05940 | 86.047 | 43 | 6 | 0 | 64 | 106 | 161 | 203 | 5.63e-18 | 81.6 |
| MS.gene40203.t1 | AT5G15080 | 83.721 | 43 | 6 | 1 | 64 | 106 | 219 | 260 | 1.62e-15 | 74.7 |
| MS.gene40203.t1 | AT3G01300 | 83.721 | 43 | 6 | 1 | 64 | 106 | 213 | 254 | 1.68e-15 | 74.7 |
| MS.gene40203.t1 | AT3G28690 | 81.395 | 43 | 7 | 1 | 64 | 106 | 152 | 193 | 2.84e-15 | 73.9 |
| MS.gene40203.t1 | AT3G28690 | 81.395 | 43 | 7 | 1 | 64 | 106 | 103 | 144 | 2.91e-15 | 73.6 |
| MS.gene40203.t1 | AT3G28690 | 81.395 | 43 | 7 | 1 | 64 | 106 | 203 | 244 | 3.33e-15 | 73.6 |
| MS.gene40203.t1 | AT1G61590 | 67.347 | 49 | 16 | 0 | 64 | 112 | 173 | 221 | 6.99e-15 | 72.8 |
| MS.gene40203.t1 | AT2G26290 | 76.744 | 43 | 10 | 0 | 64 | 106 | 162 | 204 | 7.70e-15 | 72.4 |
| MS.gene40203.t1 | AT5G01020 | 74.419 | 43 | 11 | 0 | 64 | 106 | 143 | 185 | 1.45e-13 | 68.9 |
| MS.gene40203.t1 | AT2G02800 | 67.391 | 46 | 15 | 0 | 64 | 109 | 160 | 205 | 1.96e-13 | 68.6 |
| MS.gene40203.t1 | AT2G02800 | 67.391 | 46 | 15 | 0 | 64 | 109 | 160 | 205 | 1.96e-13 | 68.6 |
| MS.gene40203.t1 | AT1G14370 | 65.306 | 49 | 17 | 0 | 61 | 109 | 160 | 208 | 2.02e-13 | 68.6 |
| MS.gene40203.t1 | AT1G69790 | 65.116 | 43 | 15 | 0 | 64 | 106 | 150 | 192 | 3.39e-13 | 67.8 |
| MS.gene40203.t1 | AT1G69790 | 65.116 | 43 | 15 | 0 | 64 | 106 | 161 | 203 | 3.45e-13 | 67.8 |
| MS.gene40203.t1 | AT5G35580 | 73.810 | 42 | 11 | 0 | 65 | 106 | 151 | 192 | 3.60e-13 | 67.8 |
| MS.gene40203.t1 | AT5G35580 | 73.810 | 42 | 11 | 0 | 65 | 106 | 163 | 204 | 4.08e-13 | 67.8 |
| MS.gene40203.t1 | AT1G07570 | 71.111 | 45 | 11 | 1 | 64 | 106 | 29 | 73 | 4.72e-13 | 66.6 |
| MS.gene40203.t1 | AT1G72540 | 65.116 | 43 | 15 | 0 | 64 | 106 | 158 | 200 | 7.13e-13 | 67.0 |
| MS.gene40203.t1 | AT1G26970 | 65.854 | 41 | 14 | 0 | 66 | 106 | 48 | 88 | 7.30e-13 | 66.2 |
| MS.gene40203.t1 | AT2G28930 | 71.111 | 45 | 11 | 1 | 64 | 106 | 146 | 190 | 7.66e-13 | 66.6 |
| MS.gene40203.t1 | AT2G28930 | 71.111 | 45 | 11 | 1 | 64 | 106 | 157 | 201 | 7.87e-13 | 66.6 |
| MS.gene40203.t1 | AT2G28930 | 71.111 | 45 | 11 | 1 | 64 | 106 | 149 | 193 | 8.00e-13 | 66.6 |
| MS.gene40203.t1 | AT5G02290 | 68.889 | 45 | 12 | 1 | 64 | 106 | 145 | 189 | 1.00e-12 | 66.2 |
| MS.gene40203.t1 | AT5G02290 | 68.889 | 45 | 12 | 1 | 64 | 106 | 145 | 189 | 1.00e-12 | 66.2 |
| MS.gene40203.t1 | AT1G07570 | 71.111 | 45 | 11 | 1 | 64 | 106 | 145 | 189 | 1.01e-12 | 66.2 |
| MS.gene40203.t1 | AT1G07570 | 71.111 | 45 | 11 | 1 | 64 | 106 | 145 | 189 | 1.01e-12 | 66.2 |
| MS.gene40203.t1 | AT1G07570 | 71.111 | 45 | 11 | 1 | 64 | 106 | 145 | 189 | 1.01e-12 | 66.2 |
| MS.gene40203.t1 | AT1G07570 | 71.111 | 45 | 11 | 1 | 64 | 106 | 156 | 200 | 1.03e-12 | 66.2 |
| MS.gene40203.t1 | AT1G26970 | 65.854 | 41 | 14 | 0 | 66 | 106 | 163 | 203 | 1.14e-12 | 66.2 |
| MS.gene40203.t1 | AT3G20060 | 76.923 | 39 | 8 | 1 | 29 | 67 | 5 | 42 | 6.61e-12 | 60.8 |
| MS.gene40203.t1 | AT3G20060 | 76.923 | 39 | 8 | 1 | 29 | 67 | 50 | 87 | 1.19e-11 | 61.2 |
| MS.gene40203.t1 | AT1G74490 | 65.116 | 43 | 15 | 0 | 64 | 106 | 162 | 204 | 1.25e-11 | 63.2 |
| MS.gene40203.t1 | AT2G07180 | 67.442 | 43 | 14 | 0 | 64 | 106 | 164 | 206 | 1.96e-11 | 62.8 |
| MS.gene40203.t1 | AT2G07180 | 67.442 | 43 | 14 | 0 | 64 | 106 | 164 | 206 | 1.96e-11 | 62.8 |
Find 47 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTGCACTCATCTTGA+TGG | 0.249257 | 3.2:-89061631 | None:intergenic |
| AATTGCAAGATCACCTTAAC+AGG | 0.263546 | 3.2:-89063969 | None:intergenic |
| ATGGGACTTGAGGTGGAATT+TGG | 0.271420 | 3.2:+89064632 | MS.gene40203:CDS |
| CTTGAACGGTGGTGATGGTC+TGG | 0.289548 | 3.2:-89064679 | None:intergenic |
| TGAGGAGGAGCAGAGGCTTT+TGG | 0.329273 | 3.2:+89062976 | MS.gene40203:intron |
| CTCTTTGCTAGTTTAAGCCT+TGG | 0.348527 | 3.2:-89064735 | None:intergenic |
| TGCTTTGCCAATCTTCATCT+AGG | 0.349778 | 3.2:+89063530 | MS.gene40203:CDS |
| ATCAAAGATGGACAAGTTAT+AGG | 0.369619 | 3.2:+89063918 | MS.gene40203:CDS |
| TGTCAGATGAGTGGTGATTC+TGG | 0.373206 | 3.2:+89062576 | MS.gene40203:intron |
| TATAGGTTATGTGGATCAAT+GGG | 0.403077 | 3.2:+89063935 | MS.gene40203:CDS |
| TTGTGGAAAAGAACAATAAC+AGG | 0.420109 | 3.2:+89062633 | MS.gene40203:CDS |
| ACTAGAATGAAAATTGCATT+AGG | 0.423344 | 3.2:+89063175 | MS.gene40203:CDS |
| GGGCACTTCACTCCCTGTTA+AGG | 0.450907 | 3.2:+89063956 | MS.gene40203:CDS |
| GGCTCTGCTTAACAATCAAC+AGG | 0.465116 | 3.2:+89063254 | MS.gene40203:CDS |
| AAGAATATGTTGTCTTCCTC+AGG | 0.473205 | 3.2:-89062612 | None:intergenic |
| TTGAACGGTGGTGATGGTCT+GGG | 0.480172 | 3.2:-89064678 | None:intergenic |
| GCAACTGCAGCTCTCACAGC+AGG | 0.480350 | 3.2:+89063233 | MS.gene40203:CDS |
| GTTCATGACAAGAGGGAGCT+TGG | 0.480632 | 3.2:+89063006 | MS.gene40203:CDS |
| TTATAGGTTATGTGGATCAA+TGG | 0.483999 | 3.2:+89063934 | MS.gene40203:CDS |
| AGCTTCTTGAACGGTGGTGA+TGG | 0.489012 | 3.2:-89064684 | None:intergenic |
| AATTGCATTAGGTGCAGCTA+AGG | 0.490148 | 3.2:+89063186 | MS.gene40203:CDS |
| GAGTGCAAAGGAAGAGATTG+TGG | 0.517469 | 3.2:+89061641 | MS.gene40203:CDS |
| GCTTTGCCAATCTTCATCTA+GGG | 0.523034 | 3.2:+89063531 | MS.gene40203:CDS |
| CAGGGTGATATGATCAAAGA+TGG | 0.524043 | 3.2:+89063906 | MS.gene40203:intron |
| ATGTTACCCTAGATGAAGAT+TGG | 0.531480 | 3.2:-89063537 | None:intergenic |
| TGGACAAGTTATAGGTTATG+TGG | 0.534522 | 3.2:+89063926 | MS.gene40203:CDS |
| TGACAAGCTTCTTGAGACCA+AGG | 0.563747 | 3.2:+89064718 | MS.gene40203:CDS |
| GTGTATGAGTTCATGACAAG+AGG | 0.564471 | 3.2:+89062998 | MS.gene40203:CDS |
| GATTGTGATGGGACTTGAGG+TGG | 0.571617 | 3.2:+89064625 | MS.gene40203:CDS |
| AGTGCAAAGGAAGAGATTGT+GGG | 0.575422 | 3.2:+89061642 | MS.gene40203:CDS |
| TGAGATTGTGATGGGACTTG+AGG | 0.583589 | 3.2:+89064622 | MS.gene40203:CDS |
| CATGTCAGCAGCTTCTTGAA+CGG | 0.584545 | 3.2:-89064693 | None:intergenic |
| GTCAGCAGCTTCTTGAACGG+TGG | 0.593457 | 3.2:-89064690 | None:intergenic |
| AGGAAGACAACATATTCTTG+TGG | 0.600574 | 3.2:+89062616 | MS.gene40203:CDS |
| GGTGGAATTTGGCATTAGTG+TGG | 0.628201 | 3.2:+89064643 | MS.gene40203:CDS |
| GTGCAGGTTGAGATTGTGAT+GGG | 0.630018 | 3.2:+89064614 | MS.gene40203:intron |
| TGTGAGAGCTGCAGTTGCTG+AGG | 0.635354 | 3.2:-89063228 | None:intergenic |
| ACTGTTGTGAGGAGGAGCAG+AGG | 0.644291 | 3.2:+89062969 | MS.gene40203:intron |
| TGTGCAGGTTGAGATTGTGA+TGG | 0.647380 | 3.2:+89064613 | MS.gene40203:intron |
| TACCATCAAGATGAGTGCAA+AGG | 0.649547 | 3.2:+89061629 | MS.gene40203:CDS |
| TGTATGAGTTCATGACAAGA+GGG | 0.652097 | 3.2:+89062999 | MS.gene40203:CDS |
| ATTGCATTAGGTGCAGCTAA+GGG | 0.656681 | 3.2:+89063187 | MS.gene40203:CDS |
| TGATTGGACTGTCAGATGAG+TGG | 0.670291 | 3.2:+89062567 | MS.gene40203:intron |
| GTGCAAAGGAAGAGATTGTG+GGG | 0.684414 | 3.2:+89061643 | MS.gene40203:CDS |
| GATACTCTGCTACATTACCA+TGG | 0.696698 | 3.2:+89063149 | MS.gene40203:CDS |
| ATTGCAAGATCACCTTAACA+GGG | 0.717743 | 3.2:-89063968 | None:intergenic |
| ATAGGTTATGTGGATCAATG+GGG | 0.754994 | 3.2:+89063936 | MS.gene40203:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTAATCCATTATAT+TGG | - | chr3.2:89062050-89062069 | None:intergenic | 10.0% |
| !! | AAATATTAATCCATTATATT+GGG | - | chr3.2:89062049-89062068 | None:intergenic | 10.0% |
| !! | ATATGTATATAATATAGTAT+TGG | - | chr3.2:89063075-89063094 | None:intergenic | 10.0% |
| !! | ATTTAGTTGTTATAATTAAT+TGG | + | chr3.2:89061751-89061770 | MS.gene40203:intron | 10.0% |
| !! | TATAAAATATAATAGTAGTT+GGG | - | chr3.2:89064312-89064331 | None:intergenic | 10.0% |
| !! | TTTAGTTGTTATAATTAATT+GGG | + | chr3.2:89061752-89061771 | MS.gene40203:intron | 10.0% |
| !!! | ATTAATATTTTACTGAATAA+GGG | + | chr3.2:89062059-89062078 | MS.gene40203:intron | 10.0% |
| !!! | ATTAATTTGATTAAAAAAGT+CGG | - | chr3.2:89063570-89063589 | None:intergenic | 10.0% |
| !! | AAACATTTGAAGAATAAAAA+AGG | - | chr3.2:89063827-89063846 | None:intergenic | 15.0% |
| !! | AACATTTGAAGAATAAAAAA+GGG | - | chr3.2:89063826-89063845 | None:intergenic | 15.0% |
| !! | AATTAAAAAAAAAAGGATTG+TGG | + | chr3.2:89063587-89063606 | MS.gene40203:intron | 15.0% |
| !! | CTATAAAATATAATAGTAGT+TGG | - | chr3.2:89064313-89064332 | None:intergenic | 15.0% |
| !! | CTTTCATAAAAAAAATAGTA+CGG | + | chr3.2:89064141-89064160 | MS.gene40203:intron | 15.0% |
| !! | TCTAAATAGATATAAAAATG+TGG | + | chr3.2:89061543-89061562 | MS.gene40203:intron | 15.0% |
| !! | TTTCATAAAAAAAATAGTAC+GGG | + | chr3.2:89064142-89064161 | MS.gene40203:intron | 15.0% |
| !!! | ATATGTTTTGATCTTATTTA+AGG | + | chr3.2:89063491-89063510 | MS.gene40203:intron | 15.0% |
| !!! | CTATAAACACTTTAAAATAA+TGG | - | chr3.2:89063452-89063471 | None:intergenic | 15.0% |
| !!! | CTATTATATTTTATAGTAGT+TGG | + | chr3.2:89064317-89064336 | MS.gene40203:intron | 15.0% |
| !!! | GATTAATATTTTACTGAATA+AGG | + | chr3.2:89062058-89062077 | MS.gene40203:intron | 15.0% |
| !!! | TTACTTTTTTTTTTGACAAA+TGG | + | chr3.2:89061779-89061798 | MS.gene40203:intron | 15.0% |
| !!! | TTGATAATTGAAATGTAAAT+TGG | + | chr3.2:89062825-89062844 | MS.gene40203:intron | 15.0% |
| !!! | TTTTTAGATCCTTAAATATA+TGG | + | chr3.2:89061812-89061831 | MS.gene40203:intron | 15.0% |
| !! | AATAGTGTATTTCAAATCAA+TGG | - | chr3.2:89061920-89061939 | None:intergenic | 20.0% |
| !! | AATGCAAAACATTAATATCT+AGG | - | chr3.2:89062543-89062562 | None:intergenic | 20.0% |
| !! | CTATTTATAGACTAATTTGA+AGG | + | chr3.2:89064348-89064367 | MS.gene40203:intron | 20.0% |
| !! | TAACTATGCAATGAAAATTA+AGG | - | chr3.2:89061731-89061750 | None:intergenic | 20.0% |
| !! | TATCAATGTCCATATATTTA+AGG | - | chr3.2:89061824-89061843 | None:intergenic | 20.0% |
| !!! | AAGCATAGACATATTTTAAT+TGG | - | chr3.2:89063320-89063339 | None:intergenic | 20.0% |
| !!! | AGATTTGAATTTTTAGTAAG+TGG | + | chr3.2:89062272-89062291 | MS.gene40203:intron | 20.0% |
| !!! | ATTAGAGATTTAAGATCAAT+CGG | + | chr3.2:89061843-89061862 | MS.gene40203:intron | 20.0% |
| !!! | ATTGTTTCTTTATTTTGTTG+AGG | + | chr3.2:89062437-89062456 | MS.gene40203:intron | 20.0% |
| !!! | CTTGAATTTTTTTTAGTAAG+TGG | + | chr3.2:89062014-89062033 | MS.gene40203:intron | 20.0% |
| !!! | GGATAATTTAGTGAAATTTT+AGG | - | chr3.2:89061710-89061729 | None:intergenic | 20.0% |
| !!! | GTTTTTCTTGATGAATATTT+GGG | + | chr3.2:89061589-89061608 | MS.gene40203:intron | 20.0% |
| !!! | TTTGATTGATCTGTTTTTAT+AGG | + | chr3.2:89061505-89061524 | MS.gene40203:intron | 20.0% |
| ! | AAATTGAAAAACACAAACAC+CGG | - | chr3.2:89062767-89062786 | None:intergenic | 25.0% |
| ! | ACTAGAATGAAAATTGCATT+AGG | + | chr3.2:89063175-89063194 | MS.gene40203:CDS | 25.0% |
| ! | AGATCAAAACATATAAAGCT+TGG | - | chr3.2:89063485-89063504 | None:intergenic | 25.0% |
| ! | ATTTACATTTCAAATTGTGC+AGG | + | chr3.2:89064598-89064617 | MS.gene40203:intron | 25.0% |
| ! | CATATATTAATCATGCTGTA+AGG | + | chr3.2:89063090-89063109 | MS.gene40203:intron | 25.0% |
| ! | CTATTAGTTAAACACATGTT+TGG | - | chr3.2:89062503-89062522 | None:intergenic | 25.0% |
| ! | GATCAAAACATATAAAGCTT+GGG | - | chr3.2:89063484-89063503 | None:intergenic | 25.0% |
| ! | GCAAAAATATATATCCATGA+AGG | + | chr3.2:89062703-89062722 | MS.gene40203:intron | 25.0% |
| ! | GTTCAAATGCACAATTTATT+TGG | + | chr3.2:89062222-89062241 | MS.gene40203:intron | 25.0% |
| ! | TCACCAAAAAAATGAAACAT+TGG | - | chr3.2:89062409-89062428 | None:intergenic | 25.0% |
| ! | TGATGTATATATTTCCACTA+GGG | + | chr3.2:89063649-89063668 | MS.gene40203:intron | 25.0% |
| ! | TTGATGTATATATTTCCACT+AGG | + | chr3.2:89063648-89063667 | MS.gene40203:intron | 25.0% |
| ! | TTTGAAAGAAAAAGAAAGTC+AGG | - | chr3.2:89064027-89064046 | None:intergenic | 25.0% |
| !! | ATGTTTTGCATTTTTGTGAT+TGG | + | chr3.2:89062551-89062570 | MS.gene40203:intron | 25.0% |
| !! | CTTTTTCCACTCTTAATTAA+TGG | - | chr3.2:89064200-89064219 | None:intergenic | 25.0% |
| !! | GGTTTTTCTTGATGAATATT+TGG | + | chr3.2:89061588-89061607 | MS.gene40203:intron | 25.0% |
| !! | TCTATTTTACATATGTATGC+AGG | - | chr3.2:89064275-89064294 | None:intergenic | 25.0% |
| !! | TTCATAGTATCTGAACTTTT+AGG | + | chr3.2:89062892-89062911 | MS.gene40203:intron | 25.0% |
| !!! | ATATTTGACTTGAGTAGTTT+GGG | + | chr3.2:89064114-89064133 | MS.gene40203:intron | 25.0% |
| !!! | ATCGTAATTGGATTTGTTTT+AGG | + | chr3.2:89061567-89061586 | MS.gene40203:intron | 25.0% |
| !!! | GTACCAATGTTTCATTTTTT+TGG | + | chr3.2:89062403-89062422 | MS.gene40203:intron | 25.0% |
| !!! | TAATCTCTTTTTAGTGTTTC+CGG | + | chr3.2:89062745-89062764 | MS.gene40203:intron | 25.0% |
| !!! | TATATTTTTGCTTCTTCAAG+AGG | - | chr3.2:89062694-89062713 | None:intergenic | 25.0% |
| !!! | TTACAGTTTTAAAATCTGCA+GGG | + | chr3.2:89063888-89063907 | MS.gene40203:intron | 25.0% |
| !!! | TTTACAGTTTTAAAATCTGC+AGG | + | chr3.2:89063887-89063906 | MS.gene40203:intron | 25.0% |
| AGGAAAATCAGAATAGTGTT+TGG | + | chr3.2:89064530-89064549 | MS.gene40203:intron | 30.0% | |
| ATAGACTAATTTGAAGGCTA+TGG | + | chr3.2:89064354-89064373 | MS.gene40203:intron | 30.0% | |
| ATCAAAGATGGACAAGTTAT+AGG | + | chr3.2:89063918-89063937 | MS.gene40203:CDS | 30.0% | |
| ATGCTTCCATTAATTAAGAG+TGG | + | chr3.2:89064191-89064210 | MS.gene40203:intron | 30.0% | |
| CATGTGTTTAACTAATAGTG+TGG | + | chr3.2:89062505-89062524 | MS.gene40203:intron | 30.0% | |
| GCAACAGAAATTAAATCAAC+AGG | - | chr3.2:89064396-89064415 | None:intergenic | 30.0% | |
| GTATTTCAAATCAATGGTGA+AGG | - | chr3.2:89061914-89061933 | None:intergenic | 30.0% | |
| GTGATTATTTGATTCATAGC+AGG | + | chr3.2:89064510-89064529 | MS.gene40203:intron | 30.0% | |
| GTTCAAATGCGCAATTTATT+TGG | + | chr3.2:89061963-89061982 | MS.gene40203:intron | 30.0% | |
| TAAAAATGTGGCATCGTAAT+TGG | + | chr3.2:89061555-89061574 | MS.gene40203:intron | 30.0% | |
| TATAGGTTATGTGGATCAAT+GGG | + | chr3.2:89063935-89063954 | MS.gene40203:CDS | 30.0% | |
| TATCTTGAGTACTCTGATAT+AGG | + | chr3.2:89063625-89063644 | MS.gene40203:intron | 30.0% | |
| TTATAGGTTATGTGGATCAA+TGG | + | chr3.2:89063934-89063953 | MS.gene40203:CDS | 30.0% | |
| TTATTCTTCAAATGTTTGCC+AGG | + | chr3.2:89063830-89063849 | MS.gene40203:intron | 30.0% | |
| TTGACGAAGATCAAAGAAAA+TGG | + | chr3.2:89064223-89064242 | MS.gene40203:intron | 30.0% | |
| TTGTGGAAAAGAACAATAAC+AGG | + | chr3.2:89062633-89062652 | MS.gene40203:CDS | 30.0% | |
| TTTCCAGTAGCAATATATGA+TGG | + | chr3.2:89062784-89062803 | MS.gene40203:intron | 30.0% | |
| ! | AGTTTTTGCCAAAATTACAG+TGG | + | chr3.2:89062465-89062484 | MS.gene40203:intron | 30.0% |
| ! | CAGTGAGATTTAAGATCAAT+CGG | + | chr3.2:89062108-89062127 | MS.gene40203:intron | 30.0% |
| ! | GAACTATGATATAAAAGTGC+AGG | + | chr3.2:89062377-89062396 | MS.gene40203:intron | 30.0% |
| ! | TTTGAAGTTTGTAGGATTGA+TGG | + | chr3.2:89062083-89062102 | MS.gene40203:intron | 30.0% |
| !! | ATTTTCATTCTAGTTGACCA+TGG | - | chr3.2:89063169-89063188 | None:intergenic | 30.0% |
| !! | GATATTTGACTTGAGTAGTT+TGG | + | chr3.2:89064113-89064132 | MS.gene40203:intron | 30.0% |
| !!! | ATAAGGGTTTTGAAGTTTGT+AGG | + | chr3.2:89062075-89062094 | MS.gene40203:intron | 30.0% |
| AACTGCACACTAATCCAAAT+TGG | - | chr3.2:89063286-89063305 | None:intergenic | 35.0% | |
| AAGAATAAAAAAGGGCAACC+CGG | - | chr3.2:89063818-89063837 | None:intergenic | 35.0% | |
| AAGAATATGTTGTCTTCCTC+AGG | - | chr3.2:89062615-89062634 | None:intergenic | 35.0% | |
| AAGCAGTAACTATTTGCAAC+TGG | - | chr3.2:89064461-89064480 | None:intergenic | 35.0% | |
| AATTGCAAGATCACCTTAAC+AGG | - | chr3.2:89063972-89063991 | None:intergenic | 35.0% | |
| ACAACGTAAAATTACCCTAG+TGG | - | chr3.2:89063666-89063685 | None:intergenic | 35.0% | |
| ACTGCACACTAATCCAAATT+GGG | - | chr3.2:89063285-89063304 | None:intergenic | 35.0% | |
| AGGAAGACAACATATTCTTG+TGG | + | chr3.2:89062616-89062635 | MS.gene40203:CDS | 35.0% | |
| ATAGGTTATGTGGATCAATG+GGG | + | chr3.2:89063936-89063955 | MS.gene40203:CDS | 35.0% | |
| ATGTTACCCTAGATGAAGAT+TGG | - | chr3.2:89063540-89063559 | None:intergenic | 35.0% | |
| ATTGAAACACTTGACCTTCA+TGG | - | chr3.2:89062720-89062739 | None:intergenic | 35.0% | |
| ATTGCAAGATCACCTTAACA+GGG | - | chr3.2:89063971-89063990 | None:intergenic | 35.0% | |
| GATCCATCATATATTGCTAC+TGG | - | chr3.2:89062790-89062809 | None:intergenic | 35.0% | |
| GCTTGAGCTATATGATCAAA+TGG | + | chr3.2:89064477-89064496 | MS.gene40203:intron | 35.0% | |
| GTTCTTCATTGTTGCCTAAT+TGG | + | chr3.2:89062944-89062963 | MS.gene40203:intron | 35.0% | |
| TATGTTGTCATGTGACTGTA+AGG | + | chr3.2:89063685-89063704 | MS.gene40203:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | + | chr3.2:89063736-89063755 | MS.gene40203:intron | 35.0% | |
| TGCAAAAAATACGACAAACC+TGG | - | chr3.2:89063851-89063870 | None:intergenic | 35.0% | |
| TGGACAAGTTATAGGTTATG+TGG | + | chr3.2:89063926-89063945 | MS.gene40203:CDS | 35.0% | |
| TGTATGAGTTCATGACAAGA+GGG | + | chr3.2:89062999-89063018 | MS.gene40203:CDS | 35.0% | |
| ! | GACTAAAGTGCCCAATATAA+TGG | + | chr3.2:89062036-89062055 | MS.gene40203:intron | 35.0% |
| ! | GCAGTTTTACTTGATCAATG+AGG | + | chr3.2:89061667-89061686 | MS.gene40203:CDS | 35.0% |
| ! | TTCTTTGTTGTGATTCAAGC+AGG | + | chr3.2:89063127-89063146 | MS.gene40203:intron | 35.0% |
| !! | ACAATGTGCCACTGTAATTT+TGG | - | chr3.2:89062476-89062495 | None:intergenic | 35.0% |
| !!! | CTTTTAGGATTGCTTCAATG+AGG | + | chr3.2:89062907-89062926 | MS.gene40203:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | - | chr3.2:89063737-89063756 | None:intergenic | 35.0% |
| AATTGCATTAGGTGCAGCTA+AGG | + | chr3.2:89063186-89063205 | MS.gene40203:CDS | 40.0% | |
| AATTGGATACTGTTGTGAGG+AGG | + | chr3.2:89062961-89062980 | MS.gene40203:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | + | chr3.2:89063730-89063749 | MS.gene40203:intron | 40.0% | |
| AGTGCAAAGGAAGAGATTGT+GGG | + | chr3.2:89061642-89061661 | MS.gene40203:CDS | 40.0% | |
| ATTGCATTAGGTGCAGCTAA+GGG | + | chr3.2:89063187-89063206 | MS.gene40203:CDS | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | + | chr3.2:89063731-89063750 | MS.gene40203:intron | 40.0% | |
| CAGGGTGATATGATCAAAGA+TGG | + | chr3.2:89063906-89063925 | MS.gene40203:intron | 40.0% | |
| CCTAATTGGATACTGTTGTG+AGG | + | chr3.2:89062958-89062977 | MS.gene40203:intron | 40.0% | |
| CCTCACAACAGTATCCAATT+AGG | - | chr3.2:89062961-89062980 | None:intergenic | 40.0% | |
| GAACAAAACATGACTGTGAG+TGG | - | chr3.2:89061947-89061966 | None:intergenic | 40.0% | |
| GATACTCTGCTACATTACCA+TGG | + | chr3.2:89063149-89063168 | MS.gene40203:CDS | 40.0% | |
| GCTTTGCCAATCTTCATCTA+GGG | + | chr3.2:89063531-89063550 | MS.gene40203:CDS | 40.0% | |
| GTGTATGAGTTCATGACAAG+AGG | + | chr3.2:89062998-89063017 | MS.gene40203:CDS | 40.0% | |
| TACCATCAAGATGAGTGCAA+AGG | + | chr3.2:89061629-89061648 | MS.gene40203:CDS | 40.0% | |
| TCAACAGGTATGACCCAATT+TGG | + | chr3.2:89063269-89063288 | MS.gene40203:intron | 40.0% | |
| TCTGTTGCTCTTTCTTAGCA+TGG | + | chr3.2:89064408-89064427 | MS.gene40203:intron | 40.0% | |
| TGCTTTGCCAATCTTCATCT+AGG | + | chr3.2:89063530-89063549 | MS.gene40203:CDS | 40.0% | |
| TTCCTTTGCACTCATCTTGA+TGG | - | chr3.2:89061634-89061653 | None:intergenic | 40.0% | |
| ! | CGTGTTTGTTGAAACGTTAG+AGG | + | chr3.2:89063374-89063393 | MS.gene40203:intron | 40.0% |
| ! | GATTGATGGTTCAGTGAGAT+TGG | + | chr3.2:89062097-89062116 | MS.gene40203:intron | 40.0% |
| ! | TCTGATTTTCTCAGCTGCTT+TGG | + | chr3.2:89062865-89062884 | MS.gene40203:intron | 40.0% |
| !! | TGGTATATCTGCTTTTCCTG+AGG | + | chr3.2:89062596-89062615 | MS.gene40203:CDS | 40.0% |
| ATGGGACTTGAGGTGGAATT+TGG | + | chr3.2:89064632-89064651 | MS.gene40203:CDS | 45.0% | |
| CAACAGGACATGAGAGAGTA+AGG | - | chr3.2:89064380-89064399 | None:intergenic | 45.0% | |
| CATGTCAGCAGCTTCTTGAA+CGG | - | chr3.2:89064696-89064715 | None:intergenic | 45.0% | |
| CGTACAATACACCCAATGGT+GGG | + | chr3.2:89063762-89063781 | MS.gene40203:intron | 45.0% | |
| CTTCTCGTATACGTTCGTAC+AGG | - | chr3.2:89063429-89063448 | None:intergenic | 45.0% | |
| GAAAGTCAGGAGCTGTACTT+AGG | - | chr3.2:89064014-89064033 | None:intergenic | 45.0% | |
| GAGTGCAAAGGAAGAGATTG+TGG | + | chr3.2:89061641-89061660 | MS.gene40203:CDS | 45.0% | |
| GGCTCTGCTTAACAATCAAC+AGG | + | chr3.2:89063254-89063273 | MS.gene40203:CDS | 45.0% | |
| GGTGGAATTTGGCATTAGTG+TGG | + | chr3.2:89064643-89064662 | MS.gene40203:CDS | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | + | chr3.2:89063691-89063710 | MS.gene40203:intron | 45.0% | |
| GTGCAAAGGAAGAGATTGTG+GGG | + | chr3.2:89061643-89061662 | MS.gene40203:CDS | 45.0% | |
| TCAAACCTTGCAGTCAGATG+TGG | + | chr3.2:89064042-89064061 | MS.gene40203:intron | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | + | chr3.2:89063692-89063711 | MS.gene40203:intron | 45.0% | |
| TGACAAGCTTCTTGAGACCA+AGG | + | chr3.2:89064718-89064737 | MS.gene40203:CDS | 45.0% | |
| TGATTGGACTGTCAGATGAG+TGG | + | chr3.2:89062567-89062586 | MS.gene40203:intron | 45.0% | |
| TGTCAGATGAGTGGTGATTC+TGG | + | chr3.2:89062576-89062595 | MS.gene40203:intron | 45.0% | |
| ! | GTGCAGGTTGAGATTGTGAT+GGG | + | chr3.2:89064614-89064633 | MS.gene40203:intron | 45.0% |
| ! | TACACAAGAGGCTGTTTCCA+AGG | - | chr3.2:89063725-89063744 | None:intergenic | 45.0% |
| ! | TGAGATTGTGATGGGACTTG+AGG | + | chr3.2:89064622-89064641 | MS.gene40203:CDS | 45.0% |
| ! | TGTGCAGGTTGAGATTGTGA+TGG | + | chr3.2:89064613-89064632 | MS.gene40203:intron | 45.0% |
| !! | TCAAATTAATTAAAAAAAAA+AGG | + | chr3.2:89063580-89063599 | MS.gene40203:intron | 5.0% |
| ACCTTGCAGTCAGATGTGGA+TGG | + | chr3.2:89064046-89064065 | MS.gene40203:intron | 50.0% | |
| AGCTTCTTGAACGGTGGTGA+TGG | - | chr3.2:89064687-89064706 | None:intergenic | 50.0% | |
| GCGTACAATACACCCAATGG+TGG | + | chr3.2:89063761-89063780 | MS.gene40203:intron | 50.0% | |
| GCTGCGTACAATACACCCAA+TGG | + | chr3.2:89063758-89063777 | MS.gene40203:intron | 50.0% | |
| GTCAGGAGCTGTACTTAGGA+AGG | - | chr3.2:89064010-89064029 | None:intergenic | 50.0% | |
| GTTCATGACAAGAGGGAGCT+TGG | + | chr3.2:89063006-89063025 | MS.gene40203:CDS | 50.0% | |
| TCCATCCACATCTGACTGCA+AGG | - | chr3.2:89064050-89064069 | None:intergenic | 50.0% | |
| TTGCAGTCAGATGTGGATGG+AGG | + | chr3.2:89064049-89064068 | MS.gene40203:intron | 50.0% | |
| ! | GATTGTGATGGGACTTGAGG+TGG | + | chr3.2:89064625-89064644 | MS.gene40203:CDS | 50.0% |
| !! | TTGAACGGTGGTGATGGTCT+GGG | - | chr3.2:89064681-89064700 | None:intergenic | 50.0% |
| ACTGTTGTGAGGAGGAGCAG+AGG | + | chr3.2:89062969-89062988 | MS.gene40203:intron | 55.0% | |
| AGGTCACGGGTTCAAGTCCT+TGG | + | chr3.2:89063705-89063724 | MS.gene40203:intron | 55.0% | |
| GGGCACTTCACTCCCTGTTA+AGG | + | chr3.2:89063956-89063975 | MS.gene40203:CDS | 55.0% | |
| GTCAGCAGCTTCTTGAACGG+TGG | - | chr3.2:89064693-89064712 | None:intergenic | 55.0% | |
| TGTGAGAGCTGCAGTTGCTG+AGG | - | chr3.2:89063231-89063250 | None:intergenic | 55.0% | |
| ! | TGAGGAGGAGCAGAGGCTTT+TGG | + | chr3.2:89062976-89062995 | MS.gene40203:intron | 55.0% |
| !! | CTTGAACGGTGGTGATGGTC+TGG | - | chr3.2:89064682-89064701 | None:intergenic | 55.0% |
| ACCCTGCGTATCAGTGCACC+GGG | + | chr3.2:89063797-89063816 | MS.gene40203:intron | 60.0% | |
| GACCCTGCGTATCAGTGCAC+CGG | + | chr3.2:89063796-89063815 | MS.gene40203:intron | 60.0% | |
| GCAACTGCAGCTCTCACAGC+AGG | + | chr3.2:89063233-89063252 | MS.gene40203:CDS | 60.0% | |
| TGATACGCAGGGTCCGGGAA+GGG | - | chr3.2:89063790-89063809 | None:intergenic | 60.0% | |
| ! | AACCCGGTGCACTGATACGC+AGG | - | chr3.2:89063802-89063821 | None:intergenic | 60.0% |
| ! | ACCCGGTGCACTGATACGCA+GGG | - | chr3.2:89063801-89063820 | None:intergenic | 60.0% |
| ! | GTGCACTGATACGCAGGGTC+CGG | - | chr3.2:89063796-89063815 | None:intergenic | 60.0% |
| ! | TGCACTGATACGCAGGGTCC+GGG | - | chr3.2:89063795-89063814 | None:intergenic | 60.0% |
| CGGGAAGGGGTCCCACCATT+GGG | - | chr3.2:89063776-89063795 | None:intergenic | 65.0% | |
| CTGATACGCAGGGTCCGGGA+AGG | - | chr3.2:89063791-89063810 | None:intergenic | 65.0% | |
| GATACGCAGGGTCCGGGAAG+GGG | - | chr3.2:89063789-89063808 | None:intergenic | 65.0% | |
| ! | CCAATGGTGGGACCCCTTCC+CGG | + | chr3.2:89063774-89063793 | MS.gene40203:intron | 65.0% |
| CCGGGAAGGGGTCCCACCAT+TGG | - | chr3.2:89063777-89063796 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 89061428 | 89064745 | 89061428 | ID=MS.gene40203 |
| chr3.2 | mRNA | 89061428 | 89064745 | 89061428 | ID=MS.gene40203.t1;Parent=MS.gene40203 |
| chr3.2 | exon | 89061428 | 89061442 | 89061428 | ID=MS.gene40203.t1.exon1;Parent=MS.gene40203.t1 |
| chr3.2 | CDS | 89061428 | 89061442 | 89061428 | ID=cds.MS.gene40203.t1;Parent=MS.gene40203.t1 |
| chr3.2 | exon | 89061629 | 89061697 | 89061629 | ID=MS.gene40203.t1.exon2;Parent=MS.gene40203.t1 |
| chr3.2 | CDS | 89061629 | 89061697 | 89061629 | ID=cds.MS.gene40203.t1;Parent=MS.gene40203.t1 |
| chr3.2 | exon | 89062582 | 89062686 | 89062582 | ID=MS.gene40203.t1.exon3;Parent=MS.gene40203.t1 |
| chr3.2 | CDS | 89062582 | 89062686 | 89062582 | ID=cds.MS.gene40203.t1;Parent=MS.gene40203.t1 |
| chr3.2 | exon | 89062983 | 89063046 | 89062983 | ID=MS.gene40203.t1.exon4;Parent=MS.gene40203.t1 |
| chr3.2 | CDS | 89062983 | 89063046 | 89062983 | ID=cds.MS.gene40203.t1;Parent=MS.gene40203.t1 |
| chr3.2 | exon | 89063149 | 89063275 | 89063149 | ID=MS.gene40203.t1.exon5;Parent=MS.gene40203.t1 |
| chr3.2 | CDS | 89063149 | 89063275 | 89063149 | ID=cds.MS.gene40203.t1;Parent=MS.gene40203.t1 |
| chr3.2 | exon | 89063513 | 89063552 | 89063513 | ID=MS.gene40203.t1.exon6;Parent=MS.gene40203.t1 |
| chr3.2 | CDS | 89063513 | 89063552 | 89063513 | ID=cds.MS.gene40203.t1;Parent=MS.gene40203.t1 |
| chr3.2 | exon | 89063909 | 89063977 | 89063909 | ID=MS.gene40203.t1.exon7;Parent=MS.gene40203.t1 |
| chr3.2 | CDS | 89063909 | 89063977 | 89063909 | ID=cds.MS.gene40203.t1;Parent=MS.gene40203.t1 |
| chr3.2 | exon | 89064620 | 89064745 | 89064620 | ID=MS.gene40203.t1.exon8;Parent=MS.gene40203.t1 |
| chr3.2 | CDS | 89064620 | 89064745 | 89064620 | ID=cds.MS.gene40203.t1;Parent=MS.gene40203.t1 |
| Gene Sequence |
| Protein sequence |
