Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40215.t1 | RHN65795.1 | 77.5 | 386 | 87 | 0 | 1 | 386 | 54 | 439 | 3.10E-163 | 584.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40215.t1 | Q9S7T8 | 54.9 | 390 | 172 | 4 | 1 | 386 | 1 | 390 | 7.6e-118 | 425.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40215.t1 | G7IW05 | 77.5 | 386 | 87 | 0 | 1 | 386 | 1 | 386 | 2.2e-163 | 584.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40215 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene40215 | PPI |
| MS.gene031697 | MS.gene40215 | PPI |
| MS.gene40215 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene40215 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40215.t1 | MTR_3g018740 | 77.461 | 386 | 87 | 0 | 1 | 386 | 1 | 386 | 0.0 | 600 |
| MS.gene40215.t1 | MTR_3g101010 | 75.641 | 390 | 92 | 2 | 1 | 388 | 1 | 389 | 0.0 | 568 |
| MS.gene40215.t1 | MTR_4g045707 | 69.870 | 385 | 115 | 1 | 4 | 388 | 5 | 388 | 0.0 | 530 |
| MS.gene40215.t1 | MTR_8g027395 | 68.653 | 386 | 118 | 2 | 3 | 388 | 15 | 397 | 0.0 | 530 |
| MS.gene40215.t1 | MTR_2g045980 | 70.513 | 390 | 107 | 3 | 1 | 386 | 1 | 386 | 0.0 | 530 |
| MS.gene40215.t1 | MTR_2g046030 | 69.487 | 390 | 111 | 3 | 1 | 386 | 1 | 386 | 0.0 | 526 |
| MS.gene40215.t1 | MTR_3g101030 | 66.917 | 399 | 109 | 5 | 10 | 388 | 34 | 429 | 0.0 | 515 |
| MS.gene40215.t1 | MTR_3g101180 | 65.736 | 394 | 122 | 4 | 5 | 386 | 6 | 398 | 4.26e-179 | 504 |
| MS.gene40215.t1 | MTR_8g027420 | 66.321 | 386 | 116 | 3 | 3 | 388 | 4 | 375 | 1.15e-178 | 501 |
| MS.gene40215.t1 | MTR_3g048000 | 67.102 | 383 | 104 | 5 | 6 | 386 | 28 | 390 | 1.16e-178 | 502 |
| MS.gene40215.t1 | MTR_8g461160 | 67.263 | 391 | 121 | 3 | 2 | 386 | 3 | 392 | 2.31e-178 | 501 |
| MS.gene40215.t1 | MTR_7g050810 | 64.213 | 394 | 130 | 4 | 3 | 388 | 14 | 404 | 3.90e-174 | 491 |
| MS.gene40215.t1 | MTR_7g451890 | 62.755 | 392 | 139 | 3 | 3 | 388 | 12 | 402 | 4.37e-174 | 491 |
| MS.gene40215.t1 | MTR_7g050750 | 62.500 | 392 | 140 | 3 | 3 | 388 | 6 | 396 | 5.69e-173 | 488 |
| MS.gene40215.t1 | MTR_7g047780 | 63.265 | 392 | 137 | 3 | 3 | 388 | 12 | 402 | 2.04e-171 | 484 |
| MS.gene40215.t1 | MTR_3g101130 | 63.198 | 394 | 134 | 4 | 1 | 388 | 1 | 389 | 2.60e-171 | 484 |
| MS.gene40215.t1 | MTR_4g088525 | 66.484 | 364 | 119 | 2 | 24 | 387 | 8 | 368 | 6.38e-170 | 479 |
| MS.gene40215.t1 | MTR_4g088535 | 66.227 | 379 | 109 | 4 | 5 | 383 | 7 | 366 | 7.72e-167 | 472 |
| MS.gene40215.t1 | MTR_3g015620 | 64.433 | 388 | 107 | 4 | 5 | 386 | 16 | 378 | 4.01e-162 | 460 |
| MS.gene40215.t1 | MTR_3g101050 | 63.731 | 386 | 112 | 6 | 8 | 386 | 32 | 396 | 2.44e-158 | 451 |
| MS.gene40215.t1 | MTR_3g102920 | 59.211 | 380 | 114 | 7 | 12 | 386 | 65 | 408 | 2.95e-140 | 405 |
| MS.gene40215.t1 | MTR_3g101190 | 54.639 | 388 | 100 | 4 | 1 | 388 | 1 | 312 | 4.80e-135 | 389 |
| MS.gene40215.t1 | MTR_3g018747 | 74.903 | 259 | 50 | 2 | 129 | 386 | 9 | 253 | 4.25e-133 | 381 |
| MS.gene40215.t1 | MTR_3g101200 | 54.897 | 388 | 145 | 4 | 3 | 386 | 29 | 390 | 1.24e-129 | 378 |
| MS.gene40215.t1 | MTR_3g111160 | 89.423 | 208 | 22 | 0 | 181 | 388 | 13 | 220 | 6.66e-127 | 364 |
| MS.gene40215.t1 | MTR_3g100995 | 68.504 | 254 | 76 | 2 | 136 | 388 | 14 | 264 | 3.70e-122 | 354 |
| MS.gene40215.t1 | MTR_7g050830 | 57.278 | 316 | 102 | 3 | 3 | 296 | 14 | 318 | 8.27e-118 | 345 |
| MS.gene40215.t1 | MTR_3g100010 | 57.742 | 310 | 83 | 4 | 30 | 306 | 42 | 336 | 3.24e-115 | 339 |
| MS.gene40215.t1 | MTR_3g015760 | 64.751 | 261 | 85 | 3 | 129 | 386 | 23 | 279 | 4.77e-107 | 316 |
| MS.gene40215.t1 | MTR_3g100520 | 63.636 | 220 | 68 | 2 | 170 | 388 | 1 | 209 | 1.61e-90 | 271 |
| MS.gene40215.t1 | MTR_3g111150 | 77.401 | 177 | 16 | 2 | 7 | 183 | 1 | 153 | 2.26e-88 | 265 |
| MS.gene40215.t1 | MTR_2g046410 | 67.805 | 205 | 61 | 2 | 186 | 386 | 144 | 347 | 6.07e-87 | 267 |
| MS.gene40215.t1 | MTR_3g099970 | 63.500 | 200 | 55 | 2 | 126 | 325 | 17 | 198 | 9.37e-84 | 254 |
| MS.gene40215.t1 | MTR_3g101110 | 57.203 | 236 | 70 | 2 | 132 | 362 | 71 | 280 | 3.82e-82 | 253 |
| MS.gene40215.t1 | MTR_3g114310 | 39.043 | 397 | 222 | 11 | 6 | 388 | 20 | 410 | 1.31e-79 | 251 |
| MS.gene40215.t1 | MTR_3g101020 | 58.289 | 187 | 50 | 2 | 203 | 388 | 1 | 160 | 2.58e-64 | 202 |
| MS.gene40215.t1 | MTR_3g102870 | 64.744 | 156 | 54 | 1 | 192 | 347 | 1 | 155 | 5.56e-64 | 202 |
| MS.gene40215.t1 | MTR_3g101150 | 63.291 | 158 | 51 | 3 | 235 | 386 | 1 | 157 | 8.72e-59 | 188 |
| MS.gene40215.t1 | MTR_3g100990 | 59.091 | 154 | 62 | 1 | 1 | 154 | 1 | 153 | 1.50e-51 | 180 |
| MS.gene40215.t1 | MTR_4g093550 | 66.667 | 87 | 29 | 0 | 2 | 88 | 3 | 89 | 4.21e-31 | 114 |
| MS.gene40215.t1 | MTR_6g046890 | 60.714 | 84 | 30 | 1 | 13 | 96 | 7 | 87 | 1.74e-24 | 98.2 |
| MS.gene40215.t1 | MTR_3g101140 | 61.842 | 76 | 25 | 2 | 316 | 388 | 42 | 116 | 2.94e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40215.t1 | AT1G47710 | 54.872 | 390 | 172 | 4 | 1 | 386 | 1 | 390 | 3.10e-152 | 435 |
| MS.gene40215.t1 | AT1G47710 | 54.872 | 390 | 172 | 4 | 1 | 386 | 28 | 417 | 2.33e-151 | 434 |
| MS.gene40215.t1 | AT3G45220 | 48.731 | 394 | 189 | 5 | 1 | 385 | 1 | 390 | 1.29e-127 | 373 |
| MS.gene40215.t1 | AT2G25240 | 49.100 | 389 | 187 | 6 | 1 | 385 | 1 | 382 | 1.60e-124 | 365 |
| MS.gene40215.t1 | AT2G26390 | 49.377 | 401 | 172 | 8 | 1 | 385 | 1 | 386 | 4.09e-124 | 363 |
| MS.gene40215.t1 | AT1G64030 | 45.685 | 394 | 182 | 7 | 1 | 385 | 1 | 371 | 3.03e-106 | 318 |
| MS.gene40215.t1 | AT2G14540 | 43.878 | 392 | 190 | 6 | 1 | 385 | 29 | 397 | 1.48e-102 | 309 |
| MS.gene40215.t1 | AT1G62170 | 42.025 | 395 | 194 | 6 | 1 | 385 | 62 | 431 | 8.20e-99 | 301 |
| MS.gene40215.t1 | AT2G35580 | 43.860 | 399 | 182 | 11 | 1 | 385 | 1 | 371 | 1.36e-97 | 295 |
| MS.gene40215.t1 | AT1G62170 | 38.785 | 428 | 194 | 7 | 1 | 385 | 62 | 464 | 3.27e-92 | 285 |
| MS.gene40215.t1 | AT1G64010 | 48.387 | 217 | 89 | 2 | 170 | 385 | 1 | 195 | 3.37e-65 | 206 |
| MS.gene40215.t1 | AT1G64010 | 47.525 | 202 | 83 | 2 | 185 | 385 | 2 | 181 | 1.39e-57 | 186 |
| MS.gene40215.t1 | AT1G63280 | 55.085 | 118 | 49 | 2 | 126 | 241 | 5 | 120 | 9.87e-37 | 130 |
| MS.gene40215.t1 | AT1G62160 | 42.000 | 200 | 87 | 4 | 192 | 385 | 42 | 218 | 1.32e-33 | 125 |
| MS.gene40215.t1 | AT1G51330 | 55.914 | 93 | 41 | 0 | 130 | 222 | 32 | 124 | 2.30e-28 | 110 |
| MS.gene40215.t1 | AT1G64020 | 33.929 | 112 | 71 | 3 | 10 | 119 | 10 | 120 | 1.36e-13 | 67.4 |
Find 78 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCATTGTACTTTAG+AGG | 0.228573 | 3.2:+88935533 | MS.gene40215:CDS |
| TTCACTTCCTTACGCACTTC+TGG | 0.250709 | 3.2:-88935425 | None:intergenic |
| TTATCTCCACCTTTCTTATA+AGG | 0.278181 | 3.2:-88935701 | None:intergenic |
| GTCTGACTATAAGGCCTCTT+TGG | 0.314575 | 3.2:+88934825 | MS.gene40215:CDS |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.316269 | 3.2:-88935475 | None:intergenic |
| GTTGAGATGATCAGTTGATT+TGG | 0.329351 | 3.2:-88934668 | None:intergenic |
| AATCGTGTCGTCTGACTATA+AGG | 0.332269 | 3.2:+88934816 | MS.gene40215:CDS |
| CAACCTTTGTCTTTCTCAAA+AGG | 0.381896 | 3.2:+88935820 | MS.gene40215:CDS |
| CAGGTGCTCAATCCACTTAC+CGG | 0.382564 | 3.2:+88936175 | MS.gene40215:CDS |
| TTCTGAGTGAAACTCTTGTT+TGG | 0.384913 | 3.2:-88934510 | None:intergenic |
| ACCGGAACAATCATCTTTGT+TGG | 0.389749 | 3.2:+88936151 | MS.gene40215:CDS |
| CTTCGTCTTCCTTATAAGAA+AGG | 0.393399 | 3.2:+88935692 | MS.gene40215:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.393434 | 3.2:+88935746 | MS.gene40215:CDS |
| CTTCTTATTGCTTGTCATGA+AGG | 0.402863 | 3.2:-88935636 | None:intergenic |
| TTCCGTTGATTTCATATTCA+AGG | 0.404811 | 3.2:+88934849 | MS.gene40215:CDS |
| TGACTGAGCTGCCATTTAGA+AGG | 0.423575 | 3.2:-88935607 | None:intergenic |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.426729 | 3.2:-88934789 | None:intergenic |
| TCTCCTTCGTCGATGGTGTA+TGG | 0.430979 | 3.2:+88934755 | MS.gene40215:CDS |
| GTGTAGGAACTCAGATTTAG+AGG | 0.438792 | 3.2:-88935795 | None:intergenic |
| AACAATCATCTTTGTTGGAC+AGG | 0.440935 | 3.2:+88936156 | MS.gene40215:CDS |
| TGCGTAAGGAAGTGAACATA+TGG | 0.443212 | 3.2:+88935432 | MS.gene40215:CDS |
| TCCAACAAAGATGATTGTTC+CGG | 0.452329 | 3.2:-88936152 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.2:+88936016 | MS.gene40215:CDS |
| CTCTCCGACGCTGCTCCTGC+CGG | 0.459274 | 3.2:+88934721 | MS.gene40215:CDS |
| GTAAAACCTCCAGCTGAGAA+AGG | 0.471088 | 3.2:-88935929 | None:intergenic |
| GTGCTCAGCATGATCGCTGC+TGG | 0.475334 | 3.2:+88934601 | MS.gene40215:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.477583 | 3.2:-88934788 | None:intergenic |
| GAGTGAAACTCTTGTTTGGT+TGG | 0.477610 | 3.2:-88934506 | None:intergenic |
| CACCAAGATCACCCGGTAAG+TGG | 0.479483 | 3.2:-88936187 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3.2:-88936121 | None:intergenic |
| ATTAAAGAACTTCTTCCTCC+AGG | 0.485712 | 3.2:+88935479 | MS.gene40215:CDS |
| TTTGGTTGGTGATTGACTCA+TGG | 0.489862 | 3.2:-88934492 | None:intergenic |
| TTCTTATTGCTTGTCATGAA+GGG | 0.490256 | 3.2:-88935635 | None:intergenic |
| AGACGACACGATTTGCTTGA+AGG | 0.492806 | 3.2:-88934806 | None:intergenic |
| ATGATCGCTGCTGGCTCTGA+TGG | 0.495156 | 3.2:+88934610 | MS.gene40215:CDS |
| GTTAAGCTATCAACTGATCC+TGG | 0.502275 | 3.2:-88935497 | None:intergenic |
| TTTGAGAAAGACAAAGGTTG+TGG | 0.502972 | 3.2:-88935817 | None:intergenic |
| GAGAGTCGAGGTCCACCGGC+AGG | 0.505461 | 3.2:-88934736 | None:intergenic |
| ATGGTGGACTCTTCTCTTGT+GGG | 0.507953 | 3.2:+88935956 | MS.gene40215:CDS |
| GAAATATGTAAGTTACAGAA+AGG | 0.511718 | 3.2:-88935985 | None:intergenic |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3.2:-88936120 | None:intergenic |
| CTGATTAGAGAAGATTTGAC+CGG | 0.517828 | 3.2:+88936133 | MS.gene40215:CDS |
| CACTGCTGCAATATTATCCA+AGG | 0.518182 | 3.2:+88936057 | MS.gene40215:CDS |
| CCTCGACTCTCCTTCGTCGA+TGG | 0.525076 | 3.2:+88934748 | MS.gene40215:CDS |
| GATGATCAGTTGATTTGGAT+CGG | 0.528836 | 3.2:-88934663 | None:intergenic |
| AGATGGAAAGCTAAAGCCCT+TGG | 0.532842 | 3.2:-88936074 | None:intergenic |
| GAAGGAGAGTCGAGGTCCAC+CGG | 0.533066 | 3.2:-88934740 | None:intergenic |
| AGCACAACTTGCAGCGACAA+TGG | 0.534900 | 3.2:-88934583 | None:intergenic |
| AAAGACAAAGGTTGTGGTGT+AGG | 0.535033 | 3.2:-88935811 | None:intergenic |
| GCTACAAAGTCTAGTTGAGA+TGG | 0.536062 | 3.2:-88936091 | None:intergenic |
| TCTCGTATGCTGAAGGAGCT+AGG | 0.541126 | 3.2:+88935896 | MS.gene40215:CDS |
| AATGGTGGACTCTTCTCTTG+TGG | 0.543680 | 3.2:+88935955 | MS.gene40215:CDS |
| CATTGTACTTTAGAGGAGCA+TGG | 0.546324 | 3.2:+88935540 | MS.gene40215:CDS |
| GACACGATTTGCTTGAAGGA+AGG | 0.561491 | 3.2:-88934802 | None:intergenic |
| CGTCTTCCTTATAAGAAAGG+TGG | 0.568369 | 3.2:+88935695 | MS.gene40215:CDS |
| TCCGACGCTGCTCCTGCCGG+TGG | 0.579915 | 3.2:+88934724 | MS.gene40215:CDS |
| TTAGGCTCCAGAAGTGCGTA+AGG | 0.581412 | 3.2:+88935418 | MS.gene40215:intron |
| TACCTTGAATATGAAATCAA+CGG | 0.585355 | 3.2:-88934851 | None:intergenic |
| TCTAAATGGCAGCTCAGTCA+AGG | 0.587482 | 3.2:+88935610 | MS.gene40215:CDS |
| CTTGGATAATATTGCAGCAG+TGG | 0.588147 | 3.2:-88936056 | None:intergenic |
| TCCACCGGCAGGAGCAGCGT+CGG | 0.589894 | 3.2:-88934725 | None:intergenic |
| GAAATCAACGGAAGCCAAAG+AGG | 0.593112 | 3.2:-88934839 | None:intergenic |
| TGAAACTTCTCGTATGCTGA+AGG | 0.598857 | 3.2:+88935889 | MS.gene40215:CDS |
| TCGAGAAGTTGCTGTCGTGT+AGG | 0.602586 | 3.2:-88934634 | None:intergenic |
| GCGTAAGGAAGTGAACATAT+GGG | 0.604799 | 3.2:+88935433 | MS.gene40215:CDS |
| AGGTGCTCAATCCACTTACC+GGG | 0.607771 | 3.2:+88936176 | MS.gene40215:CDS |
| AGAAGGCGTTGAAGCTGCTG+CGG | 0.611204 | 3.2:+88936033 | MS.gene40215:CDS |
| CAGAAACAAGCTGTGAGGCG+AGG | 0.626579 | 3.2:-88934693 | None:intergenic |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3.2:-88936117 | None:intergenic |
| ACAATGCATTAGCAAAGATG+AGG | 0.643645 | 3.2:-88935523 | None:intergenic |
| CACAGCAGAAACAAGCTGTG+AGG | 0.652997 | 3.2:-88934698 | None:intergenic |
| TAGCGATCACCAAGATCACC+CGG | 0.654012 | 3.2:-88936194 | None:intergenic |
| GATCAGTTGATTTGGATCGG+AGG | 0.660817 | 3.2:-88934660 | None:intergenic |
| ACTGCTGCAATATTATCCAA+GGG | 0.662517 | 3.2:+88936058 | MS.gene40215:CDS |
| TATCCATACACCATCGACGA+AGG | 0.669317 | 3.2:-88934758 | None:intergenic |
| TATGCTGAAGGAGCTAGGAG+TGG | 0.677919 | 3.2:+88935901 | MS.gene40215:CDS |
| AAGCTATCAACTGATCCTGG+AGG | 0.720518 | 3.2:-88935494 | None:intergenic |
| CCATCGACGAAGGAGAGTCG+AGG | 0.723381 | 3.2:-88934748 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTTTTAAATTTGATA+TGG | + | chr3.2:88935391-88935410 | MS.gene40215:intron | 10.0% |
| !! | ATTTCATGTTAATTAACTAA+AGG | + | chr3.2:88934978-88934997 | MS.gene40215:intron | 15.0% |
| !!! | TAAATTTGATATGGTTTTTT+AGG | + | chr3.2:88935400-88935419 | MS.gene40215:intron | 15.0% |
| !!! | TCAAATGAAATTTTGAATTT+CGG | - | chr3.2:88935866-88935885 | None:intergenic | 15.0% |
| !! | ATAACACGAAATAAAAATAG+CGG | - | chr3.2:88934916-88934935 | None:intergenic | 20.0% |
| !! | ATGAAATATATATGCAAAGT+CGG | - | chr3.2:88934965-88934984 | None:intergenic | 20.0% |
| !! | TAAAAACTAATTGTTTGTGA+TGG | - | chr3.2:88935009-88935028 | None:intergenic | 20.0% |
| !!! | TAACTCTAAAAAATTTGAAG+AGG | - | chr3.2:88935258-88935277 | None:intergenic | 20.0% |
| !!! | TTATTTCGTGTTATTATTTG+TGG | + | chr3.2:88934922-88934941 | MS.gene40215:intron | 20.0% |
| !!! | TTTTATTTCATTAGCCAATT+TGG | + | chr3.2:88935035-88935054 | MS.gene40215:intron | 20.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | - | chr3.2:88936123-88936142 | None:intergenic | 25.0% |
| ! | GAAATATGTAAGTTACAGAA+AGG | - | chr3.2:88935988-88936007 | None:intergenic | 25.0% |
| ! | TACCTTGAATATGAAATCAA+CGG | - | chr3.2:88934854-88934873 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.2:88936124-88936143 | None:intergenic | 25.0% |
| ! | TGAAATATATATGCAAAGTC+GGG | - | chr3.2:88934964-88934983 | None:intergenic | 25.0% |
| ! | TGTTATTATTTGTGGTGTTT+CGG | + | chr3.2:88934930-88934949 | MS.gene40215:intron | 25.0% |
| ! | TTATGCAAATAGATCATATG+AGG | - | chr3.2:88935372-88935391 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.2:88936016-88936035 | MS.gene40215:CDS | 25.0% |
| !! | ATTGATTTCAGCACAAAATA+GGG | + | chr3.2:88935191-88935210 | MS.gene40215:intron | 25.0% |
| !! | TATGATTTTCACCTTCTAAA+TGG | + | chr3.2:88935596-88935615 | MS.gene40215:CDS | 25.0% |
| !!! | AAATCATTTTTGCTCCAAAT+TGG | - | chr3.2:88935052-88935071 | None:intergenic | 25.0% |
| !!! | AATTGCTGTTTTAGAAACAT+TGG | - | chr3.2:88935167-88935186 | None:intergenic | 25.0% |
| !!! | TATTGATTTCAGCACAAAAT+AGG | + | chr3.2:88935190-88935209 | MS.gene40215:intron | 25.0% |
| !!! | TTGTTTTGAGAACAAATGTT+TGG | - | chr3.2:88934539-88934558 | None:intergenic | 25.0% |
| AAGCTCTTGAAACATATTTC+TGG | + | chr3.2:88935124-88935143 | MS.gene40215:intron | 30.0% | |
| GAAATATATATGCAAAGTCG+GGG | - | chr3.2:88934963-88934982 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.2:88935478-88935497 | None:intergenic | 30.0% | |
| GTTATTATTTGTGGTGTTTC+GGG | + | chr3.2:88934931-88934950 | MS.gene40215:intron | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | - | chr3.2:88936120-88936139 | None:intergenic | 30.0% | |
| TTATCTCCACCTTTCTTATA+AGG | - | chr3.2:88935704-88935723 | None:intergenic | 30.0% | |
| TTCTTATTGCTTGTCATGAA+GGG | - | chr3.2:88935638-88935657 | None:intergenic | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.2:88935746-88935765 | MS.gene40215:CDS | 30.0% | |
| TTTCTTGATCCTTTAGCATA+CGG | + | chr3.2:88935292-88935311 | MS.gene40215:intron | 30.0% | |
| !! | AAAAATAGCGGATAGATTGT+AGG | - | chr3.2:88934904-88934923 | None:intergenic | 30.0% |
| !! | AAAATAGCGGATAGATTGTA+GGG | - | chr3.2:88934903-88934922 | None:intergenic | 30.0% |
| !! | TTCCGTTGATTTCATATTCA+AGG | + | chr3.2:88934849-88934868 | MS.gene40215:CDS | 30.0% |
| AACAATCATCTTTGTTGGAC+AGG | + | chr3.2:88936156-88936175 | MS.gene40215:CDS | 35.0% | |
| ACAATGCATTAGCAAAGATG+AGG | - | chr3.2:88935526-88935545 | None:intergenic | 35.0% | |
| ACTGCTGCAATATTATCCAA+GGG | + | chr3.2:88936058-88936077 | MS.gene40215:CDS | 35.0% | |
| AGCATACATAACCTTTGTGT+TGG | + | chr3.2:88935080-88935099 | MS.gene40215:intron | 35.0% | |
| ATTAAAGAACTTCTTCCTCC+AGG | + | chr3.2:88935479-88935498 | MS.gene40215:CDS | 35.0% | |
| ATTAGTGAAGACCAACACAA+AGG | - | chr3.2:88935094-88935113 | None:intergenic | 35.0% | |
| CAACCTTTGTCTTTCTCAAA+AGG | + | chr3.2:88935820-88935839 | MS.gene40215:CDS | 35.0% | |
| CTGATTAGAGAAGATTTGAC+CGG | + | chr3.2:88936133-88936152 | MS.gene40215:CDS | 35.0% | |
| CTTCGTCTTCCTTATAAGAA+AGG | + | chr3.2:88935692-88935711 | MS.gene40215:CDS | 35.0% | |
| CTTCTTATTGCTTGTCATGA+AGG | - | chr3.2:88935639-88935658 | None:intergenic | 35.0% | |
| GCTAATGCATTGTACTTTAG+AGG | + | chr3.2:88935533-88935552 | MS.gene40215:CDS | 35.0% | |
| GTTGAGATGATCAGTTGATT+TGG | - | chr3.2:88934671-88934690 | None:intergenic | 35.0% | |
| TCCAACAAAGATGATTGTTC+CGG | - | chr3.2:88936155-88936174 | None:intergenic | 35.0% | |
| TTCTGAGTGAAACTCTTGTT+TGG | - | chr3.2:88934513-88934532 | None:intergenic | 35.0% | |
| TTTGAGAAAGACAAAGGTTG+TGG | - | chr3.2:88935820-88935839 | None:intergenic | 35.0% | |
| ! | AGCTGGAGGTTTTACAAAAA+TGG | + | chr3.2:88935937-88935956 | MS.gene40215:CDS | 35.0% |
| ! | GACAATCCATCTTTTGCATT+TGG | - | chr3.2:88935755-88935774 | None:intergenic | 35.0% |
| ! | GTCAGCTTTAGTTGAAAAAG+TGG | + | chr3.2:88935772-88935791 | MS.gene40215:CDS | 35.0% |
| ! | TGGAGGTTTTACAAAAATGG+TGG | + | chr3.2:88935940-88935959 | MS.gene40215:CDS | 35.0% |
| ! | TGGGTTGAAAAAGAGACAAA+TGG | + | chr3.2:88935452-88935471 | MS.gene40215:CDS | 35.0% |
| !! | CTTCCTTTTGAGAAAGACAA+AGG | - | chr3.2:88935826-88935845 | None:intergenic | 35.0% |
| !! | CTTGAAACATATTTCTGGAG+TGG | + | chr3.2:88935129-88935148 | MS.gene40215:intron | 35.0% |
| !! | GATGATCAGTTGATTTGGAT+CGG | - | chr3.2:88934666-88934685 | None:intergenic | 35.0% |
| AAAGACAAAGGTTGTGGTGT+AGG | - | chr3.2:88935814-88935833 | None:intergenic | 40.0% | |
| AATCGTGTCGTCTGACTATA+AGG | + | chr3.2:88934816-88934835 | MS.gene40215:CDS | 40.0% | |
| ACCGGAACAATCATCTTTGT+TGG | + | chr3.2:88936151-88936170 | MS.gene40215:CDS | 40.0% | |
| CACTGCTGCAATATTATCCA+AGG | + | chr3.2:88936057-88936076 | MS.gene40215:CDS | 40.0% | |
| CGTCTTCCTTATAAGAAAGG+TGG | + | chr3.2:88935695-88935714 | MS.gene40215:CDS | 40.0% | |
| CTTGGATAATATTGCAGCAG+TGG | - | chr3.2:88936059-88936078 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.2:88934791-88934810 | None:intergenic | 40.0% | |
| GCGTAAGGAAGTGAACATAT+GGG | + | chr3.2:88935433-88935452 | MS.gene40215:CDS | 40.0% | |
| GCTACAAAGTCTAGTTGAGA+TGG | - | chr3.2:88936094-88936113 | None:intergenic | 40.0% | |
| GTGTAGGAACTCAGATTTAG+AGG | - | chr3.2:88935798-88935817 | None:intergenic | 40.0% | |
| GTTAAGCTATCAACTGATCC+TGG | - | chr3.2:88935500-88935519 | None:intergenic | 40.0% | |
| TGAAACTTCTCGTATGCTGA+AGG | + | chr3.2:88935889-88935908 | MS.gene40215:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.2:88934792-88934811 | None:intergenic | 40.0% | |
| TGCGTAAGGAAGTGAACATA+TGG | + | chr3.2:88935432-88935451 | MS.gene40215:CDS | 40.0% | |
| ! | CATTGTACTTTAGAGGAGCA+TGG | + | chr3.2:88935540-88935559 | MS.gene40215:CDS | 40.0% |
| ! | GAGTGAAACTCTTGTTTGGT+TGG | - | chr3.2:88934509-88934528 | None:intergenic | 40.0% |
| !! | TTTGGTTGGTGATTGACTCA+TGG | - | chr3.2:88934495-88934514 | None:intergenic | 40.0% |
| AAGCTATCAACTGATCCTGG+AGG | - | chr3.2:88935497-88935516 | None:intergenic | 45.0% | |
| AGATGGAAAGCTAAAGCCCT+TGG | - | chr3.2:88936077-88936096 | None:intergenic | 45.0% | |
| GAAATCAACGGAAGCCAAAG+AGG | - | chr3.2:88934842-88934861 | None:intergenic | 45.0% | |
| GTAAAACCTCCAGCTGAGAA+AGG | - | chr3.2:88935932-88935951 | None:intergenic | 45.0% | |
| GTCTGACTATAAGGCCTCTT+TGG | + | chr3.2:88934825-88934844 | MS.gene40215:CDS | 45.0% | |
| TATCCATACACCATCGACGA+AGG | - | chr3.2:88934761-88934780 | None:intergenic | 45.0% | |
| TCTAAATGGCAGCTCAGTCA+AGG | + | chr3.2:88935610-88935629 | MS.gene40215:CDS | 45.0% | |
| TTCACTTCCTTACGCACTTC+TGG | - | chr3.2:88935428-88935447 | None:intergenic | 45.0% | |
| ! | AGACGACACGATTTGCTTGA+AGG | - | chr3.2:88934809-88934828 | None:intergenic | 45.0% |
| ! | GACACGATTTGCTTGAAGGA+AGG | - | chr3.2:88934805-88934824 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCTCAGCTGG+AGG | + | chr3.2:88935923-88935942 | MS.gene40215:CDS | 45.0% |
| ! | TGACTGAGCTGCCATTTAGA+AGG | - | chr3.2:88935610-88935629 | None:intergenic | 45.0% |
| !! | AATGGTGGACTCTTCTCTTG+TGG | + | chr3.2:88935955-88935974 | MS.gene40215:CDS | 45.0% |
| !! | ATGGTGGACTCTTCTCTTGT+GGG | + | chr3.2:88935956-88935975 | MS.gene40215:CDS | 45.0% |
| !! | GATCAGTTGATTTGGATCGG+AGG | - | chr3.2:88934663-88934682 | None:intergenic | 45.0% |
| !! | GTGGTTTTACCTTTCTCAGC+TGG | + | chr3.2:88935920-88935939 | MS.gene40215:CDS | 45.0% |
| AGCACAACTTGCAGCGACAA+TGG | - | chr3.2:88934586-88934605 | None:intergenic | 50.0% | |
| AGGTGCTCAATCCACTTACC+GGG | + | chr3.2:88936176-88936195 | MS.gene40215:CDS | 50.0% | |
| CACAGCAGAAACAAGCTGTG+AGG | - | chr3.2:88934701-88934720 | None:intergenic | 50.0% | |
| CAGGTGCTCAATCCACTTAC+CGG | + | chr3.2:88936175-88936194 | MS.gene40215:CDS | 50.0% | |
| GTCGATCAGCCGTATGCTAA+AGG | - | chr3.2:88935304-88935323 | None:intergenic | 50.0% | |
| TATGCTGAAGGAGCTAGGAG+TGG | + | chr3.2:88935901-88935920 | MS.gene40215:CDS | 50.0% | |
| TCGAGAAGTTGCTGTCGTGT+AGG | - | chr3.2:88934637-88934656 | None:intergenic | 50.0% | |
| TCTCCTTCGTCGATGGTGTA+TGG | + | chr3.2:88934755-88934774 | MS.gene40215:CDS | 50.0% | |
| TCTCGTATGCTGAAGGAGCT+AGG | + | chr3.2:88935896-88935915 | MS.gene40215:CDS | 50.0% | |
| ! | TTAGGCTCCAGAAGTGCGTA+AGG | + | chr3.2:88935418-88935437 | MS.gene40215:intron | 50.0% |
| CAGAAACAAGCTGTGAGGCG+AGG | - | chr3.2:88934696-88934715 | None:intergenic | 55.0% | |
| !! | AGAAGGCGTTGAAGCTGCTG+CGG | + | chr3.2:88936033-88936052 | MS.gene40215:CDS | 55.0% |
| !! | ATGATCGCTGCTGGCTCTGA+TGG | + | chr3.2:88934610-88934629 | MS.gene40215:CDS | 55.0% |
| CCATCGACGAAGGAGAGTCG+AGG | - | chr3.2:88934751-88934770 | None:intergenic | 60.0% | |
| CCTCGACTCTCCTTCGTCGA+TGG | + | chr3.2:88934748-88934767 | MS.gene40215:CDS | 60.0% | |
| GAAGGAGAGTCGAGGTCCAC+CGG | - | chr3.2:88934743-88934762 | None:intergenic | 60.0% | |
| GTGCTCAGCATGATCGCTGC+TGG | + | chr3.2:88934601-88934620 | MS.gene40215:CDS | 60.0% | |
| CTCTCCGACGCTGCTCCTGC+CGG | + | chr3.2:88934721-88934740 | MS.gene40215:CDS | 70.0% | |
| GAGAGTCGAGGTCCACCGGC+AGG | - | chr3.2:88934739-88934758 | None:intergenic | 70.0% | |
| TCCACCGGCAGGAGCAGCGT+CGG | - | chr3.2:88934728-88934747 | None:intergenic | 70.0% | |
| TCCGACGCTGCTCCTGCCGG+TGG | + | chr3.2:88934724-88934743 | MS.gene40215:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 88934484 | 88936201 | 88934484 | ID=MS.gene40215 |
| chr3.2 | mRNA | 88934484 | 88936201 | 88934484 | ID=MS.gene40215.t1;Parent=MS.gene40215 |
| chr3.2 | exon | 88934484 | 88934870 | 88934484 | ID=MS.gene40215.t1.exon1;Parent=MS.gene40215.t1 |
| chr3.2 | CDS | 88934484 | 88934870 | 88934484 | ID=cds.MS.gene40215.t1;Parent=MS.gene40215.t1 |
| chr3.2 | exon | 88935422 | 88936201 | 88935422 | ID=MS.gene40215.t1.exon2;Parent=MS.gene40215.t1 |
| chr3.2 | CDS | 88935422 | 88936201 | 88935422 | ID=cds.MS.gene40215.t1;Parent=MS.gene40215.t1 |
| Gene Sequence |
| Protein sequence |
