Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40289.t1 | XP_003603613.1 | 96.3 | 998 | 33 | 1 | 1 | 994 | 1 | 998 | 0.00E+00 | 1789.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40289.t1 | Q8RX56 | 33.7 | 875 | 511 | 15 | 152 | 992 | 259 | 1098 | 2.8e-132 | 474.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40289.t1 | G7J3F7 | 96.3 | 998 | 33 | 1 | 1 | 994 | 1 | 998 | 0.0e+00 | 1789.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052289 | MS.gene40289 | 0.830676 | 2.57E-55 | -1.69E-46 |
| MS.gene057195 | MS.gene40289 | 0.870758 | 1.15E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40289.t1 | MTR_3g109630 | 98.998 | 998 | 6 | 1 | 1 | 994 | 1 | 998 | 0.0 | 2033 |
| MS.gene40289.t1 | MTR_1g114270 | 56.729 | 966 | 373 | 9 | 30 | 994 | 1 | 922 | 0.0 | 1117 |
| MS.gene40289.t1 | MTR_1g044480 | 38.944 | 1004 | 543 | 15 | 37 | 993 | 53 | 1033 | 0.0 | 702 |
| MS.gene40289.t1 | MTR_1g073760 | 38.338 | 999 | 560 | 15 | 37 | 993 | 31 | 1015 | 0.0 | 682 |
| MS.gene40289.t1 | MTR_6g043090 | 37.190 | 968 | 567 | 11 | 58 | 993 | 188 | 1146 | 0.0 | 663 |
| MS.gene40289.t1 | MTR_1g114190 | 43.323 | 674 | 270 | 12 | 179 | 851 | 807 | 1369 | 7.93e-165 | 521 |
| MS.gene40289.t1 | MTR_8g040190 | 31.136 | 986 | 583 | 18 | 36 | 992 | 181 | 1099 | 2.82e-135 | 435 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40289.t1 | AT2G25800 | 71.457 | 995 | 272 | 10 | 3 | 994 | 2 | 987 | 0.0 | 1447 |
| MS.gene40289.t1 | AT2G20010 | 58.628 | 962 | 382 | 10 | 37 | 994 | 2 | 951 | 0.0 | 1158 |
| MS.gene40289.t1 | AT2G20010 | 60.714 | 840 | 320 | 7 | 158 | 994 | 1 | 833 | 0.0 | 1076 |
| MS.gene40289.t1 | AT2G33420 | 39.771 | 1046 | 559 | 18 | 11 | 993 | 1 | 1038 | 0.0 | 766 |
| MS.gene40289.t1 | AT1G04470 | 38.824 | 1020 | 552 | 17 | 38 | 993 | 23 | 1034 | 0.0 | 719 |
| MS.gene40289.t1 | AT5G06970 | 33.830 | 872 | 512 | 15 | 153 | 992 | 260 | 1098 | 1.66e-146 | 465 |
| MS.gene40289.t1 | AT4G11670 | 26.808 | 899 | 557 | 21 | 150 | 991 | 227 | 1081 | 2.22e-88 | 307 |
| MS.gene40289.t1 | AT4G11670 | 26.357 | 903 | 564 | 21 | 146 | 991 | 218 | 1076 | 1.08e-85 | 300 |
| MS.gene40289.t1 | AT4G11670 | 26.327 | 923 | 563 | 23 | 150 | 991 | 227 | 1113 | 2.92e-83 | 293 |
| MS.gene40289.t1 | AT4G11670 | 25.824 | 941 | 557 | 23 | 150 | 991 | 227 | 1125 | 2.63e-81 | 288 |
Find 258 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTTGTTAAAGTTTCTT+AGG | 0.168547 | 3.3:-90882380 | None:intergenic |
| TTCTACATTGACTTCGATAT+TGG | 0.198334 | 3.3:+90879628 | MS.gene40289:CDS |
| CAATGTAGAACTCAAAATTT+TGG | 0.201505 | 3.3:-90879615 | None:intergenic |
| GGCTCAAAATTTCAAGGCTT+TGG | 0.212670 | 3.3:+90881516 | MS.gene40289:CDS |
| AAAACACGTAATAATGTATT+TGG | 0.217025 | 3.3:-90882302 | None:intergenic |
| ATGGAGGGCATTGTCTCTTT+AGG | 0.233555 | 3.3:+90879713 | MS.gene40289:CDS |
| ACAAATGGGGATAGCTCTTT+TGG | 0.238042 | 3.3:+90881591 | MS.gene40289:CDS |
| CCTGGTTCTGGTTCTGCTTC+CGG | 0.244028 | 3.3:+90878220 | MS.gene40289:CDS |
| TCTGGTTCTGCTTCCGGTTC+CGG | 0.264298 | 3.3:+90878226 | MS.gene40289:CDS |
| GGTTTGAAATCTCCTGGTTC+TGG | 0.266567 | 3.3:+90878184 | MS.gene40289:CDS |
| TTCTTGTTTGTATTGCTTGC+TGG | 0.274899 | 3.3:+90882005 | MS.gene40289:CDS |
| TTGCGAATCTCGTGAAAATA+TGG | 0.276207 | 3.3:+90880775 | MS.gene40289:CDS |
| GAGTTGAAGCAATTCATTTC+AGG | 0.278627 | 3.3:+90880594 | MS.gene40289:CDS |
| TTTGGAATACTCGGAATCTT+TGG | 0.280205 | 3.3:-90879597 | None:intergenic |
| CATGGACTCGTTATTCTTCC+CGG | 0.286039 | 3.3:-90879225 | None:intergenic |
| CAGGATTGATCCGTTTCTTC+AGG | 0.286621 | 3.3:+90881887 | MS.gene40289:CDS |
| CAGTCTGTCTATTCTAGTCT+TGG | 0.288410 | 3.3:-90880799 | None:intergenic |
| GAGTTTCTCTTCTGAGAATT+TGG | 0.289177 | 3.3:-90881558 | None:intergenic |
| TTGGAGATCCCTCATCTTCC+AGG | 0.293760 | 3.3:+90881868 | MS.gene40289:CDS |
| GCCGCATGTCGAACCTCTTC+TGG | 0.301195 | 3.3:+90878022 | MS.gene40289:CDS |
| TGGAGGGCATTGTCTCTTTA+GGG | 0.304365 | 3.3:+90879714 | MS.gene40289:CDS |
| TTCTGCTTCCGGTTCCGGTC+AGG | 0.305029 | 3.3:+90878231 | MS.gene40289:CDS |
| ATAATGAGAGCTTCCTTTGA+TGG | 0.306004 | 3.3:+90881981 | MS.gene40289:CDS |
| CTCGTCAGTGCCGGCATTGT+TGG | 0.318661 | 3.3:-90881483 | None:intergenic |
| CTATGATTTGTGAATCCTTC+CGG | 0.327209 | 3.3:-90882049 | None:intergenic |
| AAGTTCTAAAGGAGCTGTTT+TGG | 0.333586 | 3.3:+90882084 | MS.gene40289:CDS |
| ATAAGCTCCCCAACCGTTAA+CGG | 0.334980 | 3.3:-90878268 | None:intergenic |
| AGTAAGGTTAAGAAGGCTTT+TGG | 0.339002 | 3.3:+90878163 | MS.gene40289:CDS |
| GAAGAGGACTCTCAAGGTTC+TGG | 0.339762 | 3.3:+90879097 | MS.gene40289:CDS |
| CCTGGGTGAATTTGATGTTC+TGG | 0.342448 | 3.3:+90881656 | MS.gene40289:CDS |
| TGCCACTGGCCAGATGGATT+TGG | 0.344716 | 3.3:+90879517 | MS.gene40289:CDS |
| TTCCACGATCAAAAGTTTCA+TGG | 0.359783 | 3.3:-90879679 | None:intergenic |
| AACTCGCAGGTTGCAACAAA+TGG | 0.362002 | 3.3:+90881576 | MS.gene40289:CDS |
| TCTACATTGACTTCGATATT+GGG | 0.363206 | 3.3:+90879629 | MS.gene40289:CDS |
| GCTCAAAATTTCAAGGCTTT+GGG | 0.363933 | 3.3:+90881517 | MS.gene40289:CDS |
| GAAGATCTCGTAGGCAGTTA+AGG | 0.364153 | 3.3:-90877996 | None:intergenic |
| CAATTTCCCCTGACCGGAAC+CGG | 0.365221 | 3.3:-90878239 | None:intergenic |
| CTTAAAACTTGAACAGCATC+AGG | 0.366499 | 3.3:-90880633 | None:intergenic |
| CTGTCATGTCTCTTGCAAAT+AGG | 0.366778 | 3.3:+90879264 | MS.gene40289:CDS |
| TTTGCATCCTTACATACCTT+TGG | 0.368824 | 3.3:+90879133 | MS.gene40289:CDS |
| GTTATTCTTCCCGGTTTCGA+TGG | 0.369414 | 3.3:-90879216 | None:intergenic |
| AAATACTTTGCAGTGGATCC+TGG | 0.374692 | 3.3:+90881638 | MS.gene40289:CDS |
| TATGATTTGTGAATCCTTCC+GGG | 0.375343 | 3.3:-90882048 | None:intergenic |
| TGTACGTTTCAATTCTTTCT+CGG | 0.375733 | 3.3:-90879814 | None:intergenic |
| TCTAAGAAGAGTCCTGGTTC+TGG | 0.378612 | 3.3:+90878208 | MS.gene40289:CDS |
| TTGGATAGGCCCATCGAAAC+CGG | 0.381362 | 3.3:+90879206 | MS.gene40289:CDS |
| GCCTACATCCTTTGCAAGAA+TGG | 0.382078 | 3.3:-90880466 | None:intergenic |
| TGCTTGCTGGAGGCCCCTCT+CGG | 0.388086 | 3.3:+90882018 | MS.gene40289:CDS |
| TCGTGGAAACGTTGAAACTA+TGG | 0.390886 | 3.3:+90879694 | MS.gene40289:CDS |
| TGTTGTTGAATCTCTTCTCT+TGG | 0.391006 | 3.3:-90877870 | None:intergenic |
| GAAATTGAAACGACCGTTAA+CGG | 0.392100 | 3.3:+90878255 | MS.gene40289:CDS |
| TCTGCTTCCGGTTCCGGTCA+GGG | 0.394873 | 3.3:+90878232 | MS.gene40289:CDS |
| CAGCCGCTGCGCAGCAGAGT+TGG | 0.396522 | 3.3:-90879162 | None:intergenic |
| AGAATGACTATTATTGTTGT+TGG | 0.398818 | 3.3:-90878080 | None:intergenic |
| GCAGATTATTCATGCTGCTT+TGG | 0.399117 | 3.3:+90879187 | MS.gene40289:CDS |
| TTGGAGTCCACAAGCAAATC+AGG | 0.401211 | 3.3:+90881171 | MS.gene40289:CDS |
| CTCTGTGTCGGTCCTGAAAA+GGG | 0.409212 | 3.3:-90882174 | None:intergenic |
| AACTTCTACGGCTGCTAGTA+AGG | 0.411095 | 3.3:+90878147 | MS.gene40289:CDS |
| ACTATTGGCTCAAAATTTCA+AGG | 0.411689 | 3.3:+90881510 | MS.gene40289:CDS |
| TTGAATCTCTTCTCTTGGAA+TGG | 0.413001 | 3.3:-90877865 | None:intergenic |
| TCTCCAGCCGCGTGTCTTGA+AGG | 0.414172 | 3.3:+90881765 | MS.gene40289:CDS |
| ACTCTCAAGGTTCTGGAGGC+TGG | 0.416060 | 3.3:+90879104 | MS.gene40289:CDS |
| GTAGAAGCATTTCATAAATC+CGG | 0.416656 | 3.3:-90879346 | None:intergenic |
| ATTCCATTACCTCCAACTTC+CGG | 0.419659 | 3.3:+90882260 | MS.gene40289:CDS |
| CGCTCAAGTTCCTGAAGAAA+CGG | 0.420917 | 3.3:-90881897 | None:intergenic |
| ACTATTATTGTTGTTGGAAG+AGG | 0.421777 | 3.3:-90878074 | None:intergenic |
| TAACGGTTGGGGAGCTTATG+AGG | 0.423194 | 3.3:+90878272 | MS.gene40289:CDS |
| CTCTCACTGATTCATGTCAC+TGG | 0.423710 | 3.3:+90879300 | MS.gene40289:CDS |
| TGAAACGACCGTTAACGGTT+GGG | 0.425777 | 3.3:+90878260 | MS.gene40289:CDS |
| AAGAAGACCTGGGGAATACT+TGG | 0.427059 | 3.3:+90879437 | MS.gene40289:CDS |
| AGATCGTCGGCGGTAGGCGG+TGG | 0.427261 | 3.3:-90877923 | None:intergenic |
| TCTACGCCATGCATCACTTC+AGG | 0.428363 | 3.3:-90881292 | None:intergenic |
| GTACGTTTCAATTCTTTCTC+GGG | 0.431558 | 3.3:-90879813 | None:intergenic |
| ACTCTGCTGCGCAGCGGCTG+CGG | 0.433323 | 3.3:+90879165 | MS.gene40289:CDS |
| TCGTCGGCGGTAGGCGGTGG+TGG | 0.434640 | 3.3:-90877920 | None:intergenic |
| TCTCTGTGTCGGTCCTGAAA+AGG | 0.436618 | 3.3:-90882175 | None:intergenic |
| CTTTGGCCACGTAATATTGA+AGG | 0.438511 | 3.3:-90881321 | None:intergenic |
| TGTCCGGAAGTTGGAGGTAA+TGG | 0.440626 | 3.3:-90882263 | None:intergenic |
| ACCACAGCCAGATTTAGCTT+TGG | 0.442738 | 3.3:-90881338 | None:intergenic |
| CTTCATTGCAGGTTGGAAGA+AGG | 0.444714 | 3.3:+90878988 | MS.gene40289:intron |
| ACTCGCAGGTTGCAACAAAT+GGG | 0.445481 | 3.3:+90881577 | MS.gene40289:CDS |
| CTGAAGAAACGGATCAATCC+TGG | 0.445795 | 3.3:-90881886 | None:intergenic |
| TACGTGGCCAAAGCTAAATC+TGG | 0.448308 | 3.3:+90881331 | MS.gene40289:CDS |
| GCACTGACGAGATGCACTAT+TGG | 0.452098 | 3.3:+90881495 | MS.gene40289:CDS |
| GCTCAGAATTTCTGCTGGAC+AGG | 0.452501 | 3.3:+90878345 | MS.gene40289:CDS |
| TTATTCTTCCCGGTTTCGAT+GGG | 0.452779 | 3.3:-90879215 | None:intergenic |
| GAATAGACAGACTGAAAGAC+TGG | 0.454811 | 3.3:+90880808 | MS.gene40289:CDS |
| GGATGATTTCAAAGTTCTAA+AGG | 0.458797 | 3.3:+90882073 | MS.gene40289:CDS |
| GACTTATCCAAAGGTATGTA+AGG | 0.460142 | 3.3:-90879140 | None:intergenic |
| ATAAAACATGGCTTAGATCA+TGG | 0.460701 | 3.3:-90881830 | None:intergenic |
| CGCAGAACTTCAACAGAAGA+TGG | 0.462658 | 3.3:-90881205 | None:intergenic |
| GCACAAGGTCTTTCTCCAAC+TGG | 0.462711 | 3.3:-90880665 | None:intergenic |
| GAGGTATTCATCGGAGAGAT+TGG | 0.474537 | 3.3:-90877972 | None:intergenic |
| ACTCAAGAGATGGCATCCTT+TGG | 0.474605 | 3.3:+90880527 | MS.gene40289:CDS |
| TTTCATCGATTTGTTGCCAC+TGG | 0.477890 | 3.3:+90879503 | MS.gene40289:CDS |
| CTCTTTAGAGACCTTTCCTT+AGG | 0.480652 | 3.3:+90877842 | MS.gene40289:CDS |
| ATGGGATTCCTCTGAATCTC+CGG | 0.480843 | 3.3:+90879327 | MS.gene40289:CDS |
| TACATTTATTCCAACAATGC+CGG | 0.483907 | 3.3:+90881473 | MS.gene40289:CDS |
| GAAACGACCGTTAACGGTTG+GGG | 0.484963 | 3.3:+90878261 | MS.gene40289:CDS |
| ATCAGATGGACCCCACTGTC+CGG | 0.485545 | 3.3:-90882279 | None:intergenic |
| GCTTGCTGGAGGCCCCTCTC+GGG | 0.487224 | 3.3:+90882019 | MS.gene40289:CDS |
| ATCACTTCAGGAAGCAATGC+AGG | 0.488114 | 3.3:-90881280 | None:intergenic |
| CGGATCAATCCTGGAAGATG+AGG | 0.488330 | 3.3:-90881877 | None:intergenic |
| ACCTCCAACTTCCGGACAGT+GGG | 0.488634 | 3.3:+90882268 | MS.gene40289:CDS |
| GATTCATGTCACTGGGCAGA+TGG | 0.489380 | 3.3:+90879308 | MS.gene40289:CDS |
| CCTCCTTGCCATTCTTGCAA+AGG | 0.490097 | 3.3:+90880458 | MS.gene40289:CDS |
| GGACCCCACTGTCCGGAAGT+TGG | 0.491064 | 3.3:-90882272 | None:intergenic |
| AATGCAGCAACTCAAGGCTT+CGG | 0.492178 | 3.3:+90879040 | MS.gene40289:CDS |
| AATGTTGTTAAAGTTTCTTA+GGG | 0.492562 | 3.3:-90882379 | None:intergenic |
| AAAGAATTGAAACGTACATC+AGG | 0.492897 | 3.3:+90879819 | MS.gene40289:CDS |
| TGCCTTCTGAAATAATAGAC+AGG | 0.494168 | 3.3:+90882123 | MS.gene40289:CDS |
| GCGTTGCTCAGAATTTCTGC+TGG | 0.499189 | 3.3:+90878340 | MS.gene40289:CDS |
| GGATGCCATCTCTTGAGTAT+TGG | 0.499480 | 3.3:-90880522 | None:intergenic |
| TATCCTTCCTGATTTGCTTG+TGG | 0.499773 | 3.3:-90881178 | None:intergenic |
| CTGCTTCCGGTTCCGGTCAG+GGG | 0.499825 | 3.3:+90878233 | MS.gene40289:CDS |
| TCAGAGATCGTTAACTTCTA+CGG | 0.500517 | 3.3:+90878135 | MS.gene40289:CDS |
| AATGCAGGATGCATTGGTAT+TGG | 0.500944 | 3.3:-90881265 | None:intergenic |
| AGATGGCATCCTTTGGCAGC+AGG | 0.503176 | 3.3:+90880534 | MS.gene40289:CDS |
| TTTAAGAGCTGCAGACCAGT+TGG | 0.503301 | 3.3:+90880650 | MS.gene40289:CDS |
| TTGAAACGACCGTTAACGGT+TGG | 0.505234 | 3.3:+90878259 | MS.gene40289:CDS |
| TTATTCATGCTGCTTTGGAT+AGG | 0.506168 | 3.3:+90879192 | MS.gene40289:CDS |
| ATCAACAAGAATACAGTGAA+TGG | 0.506366 | 3.3:+90879072 | MS.gene40289:CDS |
| GGCTGCTAGTAAGGTTAAGA+AGG | 0.508957 | 3.3:+90878156 | MS.gene40289:CDS |
| GAGGGAAGATCGTCGGCGGT+AGG | 0.509837 | 3.3:-90877929 | None:intergenic |
| CTTTGCAAGAATGGCAAGGA+GGG | 0.509853 | 3.3:-90880457 | None:intergenic |
| GCTACCCTCCATGCATGCTA+TGG | 0.509945 | 3.3:+90880567 | MS.gene40289:CDS |
| ATCTTTAACGAAGGTGGTGA+TGG | 0.510021 | 3.3:-90877893 | None:intergenic |
| TATTGGGATGGGCAGAGAAA+AGG | 0.510276 | 3.3:+90879645 | MS.gene40289:CDS |
| AGTTGCTGCATTAGCTCAAG+TGG | 0.511277 | 3.3:-90879029 | None:intergenic |
| GAGCTTCTGTCTGATGCTGA+TGG | 0.511404 | 3.3:+90879539 | MS.gene40289:CDS |
| ATTCCTTCAAGACACGCGGC+TGG | 0.512629 | 3.3:-90881768 | None:intergenic |
| GGAAGCAATGCAGGATGCAT+TGG | 0.513711 | 3.3:-90881271 | None:intergenic |
| GGAGGGCATTGTCTCTTTAG+GGG | 0.514556 | 3.3:+90879715 | MS.gene40289:CDS |
| AACAGAGATTATGATACGTC+TGG | 0.518236 | 3.3:-90879466 | None:intergenic |
| GCCATTCTTGCAAAGGATGT+AGG | 0.520093 | 3.3:+90880465 | MS.gene40289:CDS |
| TGGAGAAAGCAGACTCAAGC+AGG | 0.520288 | 3.3:+90880403 | MS.gene40289:CDS |
| TCTTCTCTTGGAATGGCCTA+AGG | 0.521382 | 3.3:-90877858 | None:intergenic |
| ACAGAAGCTCCAAATCCATC+TGG | 0.522010 | 3.3:-90879526 | None:intergenic |
| TCTGGTTCTAAGAAGAGTCC+TGG | 0.522127 | 3.3:+90878202 | MS.gene40289:CDS |
| AAAGGGGAAGGATAGACCTC+AGG | 0.522716 | 3.3:-90882157 | None:intergenic |
| TGCAAAGGATGTAGGCAGCC+TGG | 0.523674 | 3.3:+90880473 | MS.gene40289:CDS |
| AACCTGTCTATTATTTCAGA+AGG | 0.523873 | 3.3:-90882125 | None:intergenic |
| AATAATGTATTTGGATCAGA+TGG | 0.524578 | 3.3:-90882293 | None:intergenic |
| GGAAGATCGTCGGCGGTAGG+CGG | 0.525507 | 3.3:-90877926 | None:intergenic |
| CTTGCAAATAGGTCGTATGA+TGG | 0.527450 | 3.3:+90879275 | MS.gene40289:CDS |
| TCGTTTCAATTTCCCCTGAC+CGG | 0.532155 | 3.3:-90878245 | None:intergenic |
| GAAAGTTGACCGAGTGGGGA+GGG | 0.535613 | 3.3:-90877947 | None:intergenic |
| CCTTGTGCAGATAGCTGTTG+AGG | 0.535897 | 3.3:+90880680 | MS.gene40289:CDS |
| ACTCGTTTCCATAGCATGCA+TGG | 0.536398 | 3.3:-90880575 | None:intergenic |
| ATTTGTTGCCACTGGCCAGA+TGG | 0.538861 | 3.3:+90879511 | MS.gene40289:CDS |
| GACGATCTTCCCTCCCCACT+CGG | 0.540231 | 3.3:+90877938 | MS.gene40289:CDS |
| CCGGAAGCAGAACCAGAACC+AGG | 0.540336 | 3.3:-90878220 | None:intergenic |
| ACGTCTCACACGCGAATCCA+TGG | 0.540350 | 3.3:-90878317 | None:intergenic |
| AATACTTTGCAGTGGATCCT+GGG | 0.540872 | 3.3:+90881639 | MS.gene40289:CDS |
| CCGAGTCAGAACTCGCCGCT+TGG | 0.541782 | 3.3:+90878109 | MS.gene40289:CDS |
| GATGAGGGTTTCTGAAGCCA+TGG | 0.541906 | 3.3:+90878300 | MS.gene40289:CDS |
| CTCAATGAGGCTCTCTGTGT+CGG | 0.542053 | 3.3:-90882186 | None:intergenic |
| GGCATTATCTTTAACGAAGG+TGG | 0.543436 | 3.3:-90877899 | None:intergenic |
| CATTGACTTCGATATTGGGA+TGG | 0.544223 | 3.3:+90879633 | MS.gene40289:CDS |
| TGGAACAAATCAAGAAGACC+TGG | 0.545660 | 3.3:+90879426 | MS.gene40289:CDS |
| TTATGGGATAGTTTGTATGT+TGG | 0.550276 | 3.3:+90881849 | MS.gene40289:CDS |
| GCACCTTCTGCTTCGTAAGG+AGG | 0.551903 | 3.3:-90880750 | None:intergenic |
| CTCTTCTTAGAACCAGAACC+AGG | 0.557153 | 3.3:-90878196 | None:intergenic |
| ATTGCACCTTCTGCTTCGTA+AGG | 0.562101 | 3.3:-90880753 | None:intergenic |
| TTCTCAGAAGAGAAACTCGC+AGG | 0.563521 | 3.3:+90881563 | MS.gene40289:CDS |
| TGAGCTAATGCAGCAACTCA+AGG | 0.568356 | 3.3:+90879034 | MS.gene40289:CDS |
| ATTCATGTCACTGGGCAGAT+GGG | 0.568585 | 3.3:+90879309 | MS.gene40289:CDS |
| GAAGCTGAAAGAATGCATCC+AGG | 0.568789 | 3.3:-90881243 | None:intergenic |
| AGACATATAAATCTTCTGCC+AGG | 0.568965 | 3.3:+90882231 | MS.gene40289:CDS |
| ATAGTGCATCTCGTCAGTGC+CGG | 0.569024 | 3.3:-90881492 | None:intergenic |
| TTGCAAGAATGGCAAGGAGG+GGG | 0.571275 | 3.3:-90880455 | None:intergenic |
| TTGTTTGTATTGCTTGCTGG+AGG | 0.576276 | 3.3:+90882008 | MS.gene40289:CDS |
| GCCTCATTGAGCAGTTTAGA+CGG | 0.577385 | 3.3:+90882198 | MS.gene40289:CDS |
| AATACAGTGAATGGCAGAAG+AGG | 0.578035 | 3.3:+90879081 | MS.gene40289:CDS |
| ATTGACTTCGATATTGGGAT+GGG | 0.578379 | 3.3:+90879634 | MS.gene40289:CDS |
| GGAAAGTTGACCGAGTGGGG+AGG | 0.578684 | 3.3:-90877948 | None:intergenic |
| TCATAAATCCGGAGATTCAG+AGG | 0.580170 | 3.3:-90879335 | None:intergenic |
| GAAGAATAACGAGTCCATGC+AGG | 0.580172 | 3.3:+90879229 | MS.gene40289:CDS |
| TCTTGGAATGGCCTAAGGAA+AGG | 0.581203 | 3.3:-90877853 | None:intergenic |
| TTCGCATAAATACTTTGCAG+TGG | 0.584932 | 3.3:+90881631 | MS.gene40289:CDS |
| TGGATAGGCCCATCGAAACC+GGG | 0.585233 | 3.3:+90879207 | MS.gene40289:CDS |
| TACAAACAAGAATCCATCAA+AGG | 0.587937 | 3.3:-90881994 | None:intergenic |
| TCTCACTGATTCATGTCACT+GGG | 0.588827 | 3.3:+90879301 | MS.gene40289:CDS |
| TGGTGGAAAGTTGACCGAGT+GGG | 0.590747 | 3.3:-90877952 | None:intergenic |
| AAGGGGAAGGATAGACCTCA+GGG | 0.591323 | 3.3:-90882156 | None:intergenic |
| GCGAATCATAAATGAAACCC+TGG | 0.591476 | 3.3:+90881225 | MS.gene40289:CDS |
| GCCAAAGCTAAATCTGGCTG+TGG | 0.591978 | 3.3:+90881337 | MS.gene40289:CDS |
| GGTGGCATTATCTTTAACGA+AGG | 0.592180 | 3.3:-90877902 | None:intergenic |
| GATAGCTGTTGAGGATTCAG+TGG | 0.593196 | 3.3:+90880689 | MS.gene40289:CDS |
| GTTCAATCCAAGTATTCCCC+AGG | 0.593786 | 3.3:-90879444 | None:intergenic |
| GAGTGGGGAGGGAAGATCGT+CGG | 0.597777 | 3.3:-90877936 | None:intergenic |
| GGAACAAATCAAGAAGACCT+GGG | 0.600803 | 3.3:+90879427 | MS.gene40289:CDS |
| TGGAAGAAGGATTGAGTCTG+TGG | 0.601665 | 3.3:+90879001 | MS.gene40289:CDS |
| GTATTCATCGGAGAGATTGG+TGG | 0.602433 | 3.3:-90877969 | None:intergenic |
| CCAGAACATCAAATTCACCC+AGG | 0.604022 | 3.3:-90881656 | None:intergenic |
| ACCAGAAGAGGTTCGACATG+CGG | 0.604617 | 3.3:-90878023 | None:intergenic |
| TTAAAACTTGAACAGCATCA+GGG | 0.605982 | 3.3:-90880632 | None:intergenic |
| AGCTTATGAGGAATCAGATG+AGG | 0.607480 | 3.3:+90878284 | MS.gene40289:CDS |
| TCTGTGTCGGTCCTGAAAAG+GGG | 0.608220 | 3.3:-90882173 | None:intergenic |
| CCCCACTGTCCGGAAGTTGG+AGG | 0.609288 | 3.3:-90882269 | None:intergenic |
| AAGCTGAAAGAATGCATCCA+GGG | 0.609415 | 3.3:-90881242 | None:intergenic |
| ACTGAGAGGCTTACCAGAAG+AGG | 0.611640 | 3.3:-90878035 | None:intergenic |
| GGTGGAAAGTTGACCGAGTG+GGG | 0.612431 | 3.3:-90877951 | None:intergenic |
| ACAGCAAGACCTGCTGCCAA+AGG | 0.613633 | 3.3:-90880543 | None:intergenic |
| CCAAGCGGCGAGTTCTGACT+CGG | 0.613768 | 3.3:-90878109 | None:intergenic |
| TGGAAACGTTGAAACTATGG+AGG | 0.615215 | 3.3:+90879697 | MS.gene40289:CDS |
| TTTGGCAGCAGGTCTTGCTG+TGG | 0.615431 | 3.3:+90880545 | MS.gene40289:CDS |
| AGTTAAGGTGAGGTATTCAT+CGG | 0.619093 | 3.3:-90877981 | None:intergenic |
| TCAGTCCAATACTCAAGAGA+TGG | 0.621303 | 3.3:+90880517 | MS.gene40289:CDS |
| TACCTCCAACTTCCGGACAG+TGG | 0.623157 | 3.3:+90882267 | MS.gene40289:CDS |
| TTTGCAAGAATGGCAAGGAG+GGG | 0.623362 | 3.3:-90880456 | None:intergenic |
| GAAGGATTCACAAATCATAG+AGG | 0.624526 | 3.3:+90882052 | MS.gene40289:CDS |
| GGATCAATCCTGGAAGATGA+GGG | 0.625391 | 3.3:-90881876 | None:intergenic |
| CTCCAAATCCATCTGGCCAG+TGG | 0.625417 | 3.3:-90879519 | None:intergenic |
| GAAAGCAGACTCAAGCAGGA+GGG | 0.626703 | 3.3:+90880407 | MS.gene40289:CDS |
| TGTCGGTCCTGAAAAGGGGA+AGG | 0.627708 | 3.3:-90882169 | None:intergenic |
| TTTATGCGAACACAGAGTTG+TGG | 0.627937 | 3.3:-90881618 | None:intergenic |
| CCTTTGCAAGAATGGCAAGG+AGG | 0.631775 | 3.3:-90880458 | None:intergenic |
| TGATAGAAATCTGCAGCAAG+AGG | 0.632292 | 3.3:+90880833 | MS.gene40289:CDS |
| ATGCCTCCTTACGAAGCAGA+AGG | 0.634351 | 3.3:+90880747 | MS.gene40289:CDS |
| CCTCAACAGCTATCTGCACA+AGG | 0.635306 | 3.3:-90880680 | None:intergenic |
| TCCGTCTAAACTGCTCAATG+AGG | 0.636700 | 3.3:-90882199 | None:intergenic |
| GAGGACTCTCAAGGTTCTGG+AGG | 0.638648 | 3.3:+90879100 | MS.gene40289:CDS |
| GCTTATGAGGAATCAGATGA+GGG | 0.638968 | 3.3:+90878285 | MS.gene40289:CDS |
| TAAAACTTGAACAGCATCAG+GGG | 0.639874 | 3.3:-90880631 | None:intergenic |
| AGCGGCTAAGATATTGCTTG+AGG | 0.639941 | 3.3:+90879742 | MS.gene40289:CDS |
| CTCGCAGGTTGCAACAAATG+GGG | 0.641472 | 3.3:+90881578 | MS.gene40289:CDS |
| GTTTCCATAGCATGCATGGA+GGG | 0.644542 | 3.3:-90880571 | None:intergenic |
| ACAAACTATCCCATAAAACA+TGG | 0.645581 | 3.3:-90881842 | None:intergenic |
| TTGCTTCCTGAAGTGATGCA+TGG | 0.649727 | 3.3:+90881286 | MS.gene40289:CDS |
| CATCCTTTGCAAGAATGGCA+AGG | 0.651566 | 3.3:-90880461 | None:intergenic |
| AGAAAGCAGACTCAAGCAGG+AGG | 0.652723 | 3.3:+90880406 | MS.gene40289:CDS |
| AGAACTACGAAGAACCTGCA+TGG | 0.652762 | 3.3:-90879243 | None:intergenic |
| ATATATCTAATGAATATCGT+CGG | 0.658453 | 3.3:+90879765 | MS.gene40289:CDS |
| TGTCTCTTTAGGGGTAGCAG+CGG | 0.659641 | 3.3:+90879724 | MS.gene40289:CDS |
| ATGGCAGAAGAGGACTCTCA+AGG | 0.662747 | 3.3:+90879091 | MS.gene40289:CDS |
| GCAGAGTTGGACTTATCCAA+AGG | 0.663196 | 3.3:-90879149 | None:intergenic |
| TGGGGAGGGAAGATCGTCGG+CGG | 0.664820 | 3.3:-90877933 | None:intergenic |
| CGTTTCCATAGCATGCATGG+AGG | 0.666154 | 3.3:-90880572 | None:intergenic |
| TCTCGTAGGCAGTTAAGGTG+AGG | 0.668289 | 3.3:-90877991 | None:intergenic |
| CTGAATTCCTTCAAGACACG+CGG | 0.671823 | 3.3:-90881772 | None:intergenic |
| TTGGTGGAAAGTTGACCGAG+TGG | 0.672351 | 3.3:-90877953 | None:intergenic |
| AATAGACAGACTGAAAGACT+GGG | 0.674683 | 3.3:+90880809 | MS.gene40289:CDS |
| GGAAACGTTGAAACTATGGA+GGG | 0.678419 | 3.3:+90879698 | MS.gene40289:CDS |
| AGGAATTCAGCAGCTATGTG+AGG | 0.683434 | 3.3:+90881785 | MS.gene40289:CDS |
| AGGTAATGGAATTCTAGACC+TGG | 0.684017 | 3.3:-90882249 | None:intergenic |
| TATCTAATGAATATCGTCGG+AGG | 0.690045 | 3.3:+90879768 | MS.gene40289:CDS |
| AACGATCTCTGAATACCAAG+CGG | 0.693612 | 3.3:-90878124 | None:intergenic |
| TTAGCAATTGATGAACTGAG+AGG | 0.694391 | 3.3:-90878049 | None:intergenic |
| GAACAAATCAAGAAGACCTG+GGG | 0.694702 | 3.3:+90879428 | MS.gene40289:CDS |
| AGTCCACAAGCAAATCAGGA+AGG | 0.695524 | 3.3:+90881175 | MS.gene40289:CDS |
| AGTCCAACTCTGCTGCGCAG+CGG | 0.703256 | 3.3:+90879159 | MS.gene40289:CDS |
| TGCGGCGACGAAGATCTCGT+AGG | 0.722455 | 3.3:-90878005 | None:intergenic |
| TCAGTGGACAGTGACGATGG+TGG | 0.726194 | 3.3:+90880705 | MS.gene40289:CDS |
| GATTCAGTGGACAGTGACGA+TGG | 0.726792 | 3.3:+90880702 | MS.gene40289:CDS |
| ACAGGTTTGCAACTACCCTG+AGG | 0.728126 | 3.3:+90882141 | MS.gene40289:CDS |
| TAGATGCCTTCAATATTACG+TGG | 0.734258 | 3.3:+90881315 | MS.gene40289:CDS |
| CCTCCAACTTCCGGACAGTG+GGG | 0.745165 | 3.3:+90882269 | MS.gene40289:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTATTCTTTAGTAAA+AGG | + | chr3.3:90879894-90879913 | MS.gene40289:intron | 10.0% |
| !! | AAAATTCAACATTCAATTAT+TGG | + | chr3.3:90878471-90878490 | MS.gene40289:intron | 15.0% |
| !! | TGTAAACCAAAAAATTTAAT+TGG | - | chr3.3:90880153-90880172 | None:intergenic | 15.0% |
| !!! | AAAGAATAATTACTCTTTTA+CGG | + | chr3.3:90881682-90881701 | MS.gene40289:CDS | 15.0% |
| !!! | AATATTCTTTTAGTTGATTA+GGG | + | chr3.3:90881039-90881058 | MS.gene40289:intron | 15.0% |
| !!! | ATTAAATTTTTTGGTTTACA+AGG | + | chr3.3:90880153-90880172 | MS.gene40289:intron | 15.0% |
| !! | AAAACACGTAATAATGTATT+TGG | - | chr3.3:90882305-90882324 | None:intergenic | 20.0% |
| !! | AGTTAAACAACAAATTTGAA+TGG | - | chr3.3:90878714-90878733 | None:intergenic | 20.0% |
| !! | ATATATCTAATGAATATCGT+CGG | + | chr3.3:90879765-90879784 | MS.gene40289:CDS | 20.0% |
| !! | ATCTTTAATAACTGTATATG+TGG | + | chr3.3:90881402-90881421 | MS.gene40289:intron | 20.0% |
| !! | ATTTAATTGGCATGTAAATA+TGG | - | chr3.3:90880140-90880159 | None:intergenic | 20.0% |
| !! | GTTACTTGAAAAAAATGTTA+GGG | + | chr3.3:90880911-90880930 | MS.gene40289:intron | 20.0% |
| !!! | AATAGTTTAGCTCTTATATA+TGG | + | chr3.3:90881378-90881397 | MS.gene40289:intron | 20.0% |
| !!! | CAATATTCTTTTAGTTGATT+AGG | + | chr3.3:90881038-90881057 | MS.gene40289:intron | 20.0% |
| !!! | GATGATTTTTCGTTTTTATT+TGG | + | chr3.3:90878438-90878457 | MS.gene40289:intron | 20.0% |
| !!! | TACATGCCAATTAAATTTTT+TGG | + | chr3.3:90880144-90880163 | MS.gene40289:intron | 20.0% |
| !!! | TCAAAAGCTCTAATTAATTT+TGG | - | chr3.3:90878674-90878693 | None:intergenic | 20.0% |
| !!! | TGCATAGATTTTACTTATAA+AGG | + | chr3.3:90880046-90880065 | MS.gene40289:intron | 20.0% |
| !!! | TGTTACTTGAAAAAAATGTT+AGG | + | chr3.3:90880910-90880929 | MS.gene40289:intron | 20.0% |
| !!! | TGTTTTTTATTCCAATATTC+AGG | + | chr3.3:90881441-90881460 | MS.gene40289:intron | 20.0% |
| !!! | TTTTACTTTTTAGTTGAACA+TGG | + | chr3.3:90878941-90878960 | MS.gene40289:intron | 20.0% |
| ! | AATAAACATTTACACAGACA+AGG | - | chr3.3:90878856-90878875 | None:intergenic | 25.0% |
| ! | AATAATGTATTTGGATCAGA+TGG | - | chr3.3:90882296-90882315 | None:intergenic | 25.0% |
| ! | AATGTAAAGTAATTCATGCT+TGG | - | chr3.3:90878756-90878775 | None:intergenic | 25.0% |
| ! | ACTTAAAGTAAGTGTATGTT+TGG | + | chr3.3:90878631-90878650 | MS.gene40289:intron | 25.0% |
| ! | AGAATGACTATTATTGTTGT+TGG | - | chr3.3:90878083-90878102 | None:intergenic | 25.0% |
| ! | ATAAATAACATGCTATTGCA+CGG | - | chr3.3:90880251-90880270 | None:intergenic | 25.0% |
| ! | GAAAAATCATCAACAAAATC+TGG | - | chr3.3:90878429-90878448 | None:intergenic | 25.0% |
| ! | GATTAGGGATAATATGTTTA+TGG | + | chr3.3:90881054-90881073 | MS.gene40289:intron | 25.0% |
| ! | TCACAATGAATATCATCAAT+GGG | - | chr3.3:90880887-90880906 | None:intergenic | 25.0% |
| ! | TGATTAATTTCTGTGTATTC+TGG | + | chr3.3:90881086-90881105 | MS.gene40289:intron | 25.0% |
| !! | ATCATAATCTCTGTTTTACT+TGG | + | chr3.3:90879474-90879493 | MS.gene40289:CDS | 25.0% |
| !! | CAATGTAGAACTCAAAATTT+TGG | - | chr3.3:90879618-90879637 | None:intergenic | 25.0% |
| !! | GCTTTACAAACTAGAATTTT+GGG | + | chr3.3:90880086-90880105 | MS.gene40289:intron | 25.0% |
| !! | TCATAATCTCTGTTTTACTT+GGG | + | chr3.3:90879475-90879494 | MS.gene40289:CDS | 25.0% |
| !! | TGCAATAGCATGTTATTTAT+GGG | + | chr3.3:90880251-90880270 | MS.gene40289:intron | 25.0% |
| !! | TGCTTTACAAACTAGAATTT+TGG | + | chr3.3:90880085-90880104 | MS.gene40289:intron | 25.0% |
| !!! | ACTCAAAATTTTGGAATACT+CGG | - | chr3.3:90879609-90879628 | None:intergenic | 25.0% |
| !!! | AGAGAAGAAGATTTTTCAAA+CGG | + | chr3.3:90881720-90881739 | MS.gene40289:CDS | 25.0% |
| !!! | GATTTTGAGTGAATTGATTA+AGG | - | chr3.3:90878793-90878812 | None:intergenic | 25.0% |
| !!! | TTGGAATTTGCTTTTAACTT+TGG | + | chr3.3:90879974-90879993 | MS.gene40289:intron | 25.0% |
| AAAGAATTGAAACGTACATC+AGG | + | chr3.3:90879819-90879838 | MS.gene40289:CDS | 30.0% | |
| AACCTGTCTATTATTTCAGA+AGG | - | chr3.3:90882128-90882147 | None:intergenic | 30.0% | |
| ACAAACTATCCCATAAAACA+TGG | - | chr3.3:90881845-90881864 | None:intergenic | 30.0% | |
| ACAAATTAACGAACACCTTA+TGG | - | chr3.3:90878602-90878621 | None:intergenic | 30.0% | |
| ACTATGTTAGTTCCACATAA+AGG | - | chr3.3:90881132-90881151 | None:intergenic | 30.0% | |
| AGTGAATTGATTAAGGCTAA+AGG | - | chr3.3:90878786-90878805 | None:intergenic | 30.0% | |
| ATAAAACATGGCTTAGATCA+TGG | - | chr3.3:90881833-90881852 | None:intergenic | 30.0% | |
| ATCAACAAGAATACAGTGAA+TGG | + | chr3.3:90879072-90879091 | MS.gene40289:CDS | 30.0% | |
| ATTAAGTCATTGCAAACTGT+GGG | + | chr3.3:90880986-90881005 | MS.gene40289:intron | 30.0% | |
| ATTCGCATTGGAATTGAAAA+GGG | + | chr3.3:90878901-90878920 | MS.gene40289:intron | 30.0% | |
| ATTTCAACAAACACTAGCAT+TGG | - | chr3.3:90878560-90878579 | None:intergenic | 30.0% | |
| GTCACAATGAATATCATCAA+TGG | - | chr3.3:90880888-90880907 | None:intergenic | 30.0% | |
| GTTTGAAAAATCTTCTTCTC+TGG | - | chr3.3:90881721-90881740 | None:intergenic | 30.0% | |
| TACAAACAAGAATCCATCAA+AGG | - | chr3.3:90881997-90882016 | None:intergenic | 30.0% | |
| TACATTTATTCCAACAATGC+CGG | + | chr3.3:90881473-90881492 | MS.gene40289:CDS | 30.0% | |
| TATTTCGAGATCCTGAATAT+TGG | - | chr3.3:90881455-90881474 | None:intergenic | 30.0% | |
| TGTACGTTTCAATTCTTTCT+CGG | - | chr3.3:90879817-90879836 | None:intergenic | 30.0% | |
| TTAAAACTTGAACAGCATCA+GGG | - | chr3.3:90880635-90880654 | None:intergenic | 30.0% | |
| TTGACTAGATTCATTCCATA+AGG | + | chr3.3:90878584-90878603 | MS.gene40289:intron | 30.0% | |
| ! | ACTATTATTGTTGTTGGAAG+AGG | - | chr3.3:90878077-90878096 | None:intergenic | 30.0% |
| ! | ATGATCTAAGCCATGTTTTA+TGG | + | chr3.3:90881832-90881851 | MS.gene40289:CDS | 30.0% |
| ! | GGATGATTTCAAAGTTCTAA+AGG | + | chr3.3:90882073-90882092 | MS.gene40289:CDS | 30.0% |
| ! | GTGCAATAGCATGTTATTTA+TGG | + | chr3.3:90880250-90880269 | MS.gene40289:intron | 30.0% |
| ! | TGATCTAAGCCATGTTTTAT+GGG | + | chr3.3:90881833-90881852 | MS.gene40289:CDS | 30.0% |
| ! | TTATGGGATAGTTTGTATGT+TGG | + | chr3.3:90881849-90881868 | MS.gene40289:CDS | 30.0% |
| !! | ACTATTGGCTCAAAATTTCA+AGG | + | chr3.3:90881510-90881529 | MS.gene40289:CDS | 30.0% |
| !! | GTAGAAGCATTTCATAAATC+CGG | - | chr3.3:90879349-90879368 | None:intergenic | 30.0% |
| !! | TCTACATTGACTTCGATATT+GGG | + | chr3.3:90879629-90879648 | MS.gene40289:CDS | 30.0% |
| !! | TGAAGATTTTGATGAGCTAA+TGG | + | chr3.3:90879406-90879425 | MS.gene40289:CDS | 30.0% |
| !! | TTCTACATTGACTTCGATAT+TGG | + | chr3.3:90879628-90879647 | MS.gene40289:CDS | 30.0% |
| !!! | AATTTTGGCTACTCAAAAAG+TGG | - | chr3.3:90878659-90878678 | None:intergenic | 30.0% |
| AACAGAGATTATGATACGTC+TGG | - | chr3.3:90879469-90879488 | None:intergenic | 35.0% | |
| AATAGACAGACTGAAAGACT+GGG | + | chr3.3:90880809-90880828 | MS.gene40289:CDS | 35.0% | |
| ACAGACTATATAAACTTGCC+TGG | - | chr3.3:90879868-90879887 | None:intergenic | 35.0% | |
| AGACATATAAATCTTCTGCC+AGG | + | chr3.3:90882231-90882250 | MS.gene40289:CDS | 35.0% | |
| AGTGCTTAATGTGAGAGAAT+TGG | + | chr3.3:90879955-90879974 | MS.gene40289:intron | 35.0% | |
| ATAATGAGAGCTTCCTTTGA+TGG | + | chr3.3:90881981-90882000 | MS.gene40289:CDS | 35.0% | |
| CAGACTATATAAACTTGCCT+GGG | - | chr3.3:90879867-90879886 | None:intergenic | 35.0% | |
| CATTAAGTCATTGCAAACTG+TGG | + | chr3.3:90880985-90881004 | MS.gene40289:intron | 35.0% | |
| CTTAAAACTTGAACAGCATC+AGG | - | chr3.3:90880636-90880655 | None:intergenic | 35.0% | |
| GAAATTGAAACGACCGTTAA+CGG | + | chr3.3:90878255-90878274 | MS.gene40289:CDS | 35.0% | |
| GAAGGATTCACAAATCATAG+AGG | + | chr3.3:90882052-90882071 | MS.gene40289:CDS | 35.0% | |
| GAATGCCAAGAGATGTTTAA+AGG | - | chr3.3:90880000-90880019 | None:intergenic | 35.0% | |
| GAGTTGAAGCAATTCATTTC+AGG | + | chr3.3:90880594-90880613 | MS.gene40289:CDS | 35.0% | |
| GATTCGCATTGGAATTGAAA+AGG | + | chr3.3:90878900-90878919 | MS.gene40289:intron | 35.0% | |
| GCTCAAAATTTCAAGGCTTT+GGG | + | chr3.3:90881517-90881536 | MS.gene40289:CDS | 35.0% | |
| GGAATAATTAAGCGTGTGTT+TGG | - | chr3.3:90878835-90878854 | None:intergenic | 35.0% | |
| GTACGTTTCAATTCTTTCTC+GGG | - | chr3.3:90879816-90879835 | None:intergenic | 35.0% | |
| GTCAATTGATTGCCTTTATG+TGG | + | chr3.3:90881117-90881136 | MS.gene40289:intron | 35.0% | |
| GTCTTATGTTCTCTTGAGTT+TGG | - | chr3.3:90880955-90880974 | None:intergenic | 35.0% | |
| GTTTGATCATGAACAAACCT+AGG | + | chr3.3:90880220-90880239 | MS.gene40289:intron | 35.0% | |
| TAAAACTTGAACAGCATCAG+GGG | - | chr3.3:90880634-90880653 | None:intergenic | 35.0% | |
| TAGATGCCTTCAATATTACG+TGG | + | chr3.3:90881315-90881334 | MS.gene40289:CDS | 35.0% | |
| TATCTAATGAATATCGTCGG+AGG | + | chr3.3:90879768-90879787 | MS.gene40289:CDS | 35.0% | |
| TCAGAGATCGTTAACTTCTA+CGG | + | chr3.3:90878135-90878154 | MS.gene40289:CDS | 35.0% | |
| TGTTGTTGAATCTCTTCTCT+TGG | - | chr3.3:90877873-90877892 | None:intergenic | 35.0% | |
| TTACTGTGATATCCTAGCTT+TGG | + | chr3.3:90881152-90881171 | MS.gene40289:intron | 35.0% | |
| TTAGCAATTGATGAACTGAG+AGG | - | chr3.3:90878052-90878071 | None:intergenic | 35.0% | |
| TTCCACGATCAAAAGTTTCA+TGG | - | chr3.3:90879682-90879701 | None:intergenic | 35.0% | |
| TTCGCATAAATACTTTGCAG+TGG | + | chr3.3:90881631-90881650 | MS.gene40289:CDS | 35.0% | |
| TTGAATCTCTTCTCTTGGAA+TGG | - | chr3.3:90877868-90877887 | None:intergenic | 35.0% | |
| TTGCGAATCTCGTGAAAATA+TGG | + | chr3.3:90880775-90880794 | MS.gene40289:CDS | 35.0% | |
| TTTGCATCCTTACATACCTT+TGG | + | chr3.3:90879133-90879152 | MS.gene40289:CDS | 35.0% | |
| ! | ACACTAGCATTGGATTAAAG+TGG | - | chr3.3:90878550-90878569 | None:intergenic | 35.0% |
| ! | AGTAAGGTTAAGAAGGCTTT+TGG | + | chr3.3:90878163-90878182 | MS.gene40289:CDS | 35.0% |
| ! | AGTTAAGGTGAGGTATTCAT+CGG | - | chr3.3:90877984-90878003 | None:intergenic | 35.0% |
| ! | ATTGACTTCGATATTGGGAT+GGG | + | chr3.3:90879634-90879653 | MS.gene40289:CDS | 35.0% |
| ! | CTATGATTTGTGAATCCTTC+CGG | - | chr3.3:90882052-90882071 | None:intergenic | 35.0% |
| ! | GACTTATCCAAAGGTATGTA+AGG | - | chr3.3:90879143-90879162 | None:intergenic | 35.0% |
| ! | GAGTTTCTCTTCTGAGAATT+TGG | - | chr3.3:90881561-90881580 | None:intergenic | 35.0% |
| ! | TAACTTGTGAACTTCATTGC+AGG | + | chr3.3:90878977-90878996 | MS.gene40289:intron | 35.0% |
| ! | TACCATGAAACTTTTGATCG+TGG | + | chr3.3:90879677-90879696 | MS.gene40289:CDS | 35.0% |
| ! | TATGATTTGTGAATCCTTCC+GGG | - | chr3.3:90882051-90882070 | None:intergenic | 35.0% |
| ! | TTCTTGTTTGTATTGCTTGC+TGG | + | chr3.3:90882005-90882024 | MS.gene40289:CDS | 35.0% |
| ! | TTGTTGAGTTGTGCAAGTAA+CGG | + | chr3.3:90880194-90880213 | MS.gene40289:intron | 35.0% |
| ! | TTTGGAATACTCGGAATCTT+TGG | - | chr3.3:90879600-90879619 | None:intergenic | 35.0% |
| ! | TTTGGCCTTTAAACATCTCT+TGG | + | chr3.3:90879992-90880011 | MS.gene40289:intron | 35.0% |
| ! | TTTTGCTGCTGCATAGATAA+TGG | + | chr3.3:90880383-90880402 | MS.gene40289:intron | 35.0% |
| !! | TGCCTTCTGAAATAATAGAC+AGG | + | chr3.3:90882123-90882142 | MS.gene40289:CDS | 35.0% |
| !! | TTATTCATGCTGCTTTGGAT+AGG | + | chr3.3:90879192-90879211 | MS.gene40289:CDS | 35.0% |
| !!! | AAGTTCTAAAGGAGCTGTTT+TGG | + | chr3.3:90882084-90882103 | MS.gene40289:CDS | 35.0% |
| !!! | AGTTCTAAAGGAGCTGTTTT+GGG | + | chr3.3:90882085-90882104 | MS.gene40289:CDS | 35.0% |
| AAATACTTTGCAGTGGATCC+TGG | + | chr3.3:90881638-90881657 | MS.gene40289:CDS | 40.0% | |
| AACGATCTCTGAATACCAAG+CGG | - | chr3.3:90878127-90878146 | None:intergenic | 40.0% | |
| AAGCTGAAAGAATGCATCCA+GGG | - | chr3.3:90881245-90881264 | None:intergenic | 40.0% | |
| AATACAGTGAATGGCAGAAG+AGG | + | chr3.3:90879081-90879100 | MS.gene40289:CDS | 40.0% | |
| AATACTTTGCAGTGGATCCT+GGG | + | chr3.3:90881639-90881658 | MS.gene40289:CDS | 40.0% | |
| AGCTTATGAGGAATCAGATG+AGG | + | chr3.3:90878284-90878303 | MS.gene40289:CDS | 40.0% | |
| AGTAAAAGGTGACAAACTCG+AGG | + | chr3.3:90879908-90879927 | MS.gene40289:intron | 40.0% | |
| ATCTTTAACGAAGGTGGTGA+TGG | - | chr3.3:90877896-90877915 | None:intergenic | 40.0% | |
| ATTCCAATGCATGTACAGTG+TGG | + | chr3.3:90878395-90878414 | MS.gene40289:intron | 40.0% | |
| ATTCCATTACCTCCAACTTC+CGG | + | chr3.3:90882260-90882279 | MS.gene40289:CDS | 40.0% | |
| CAGTCTGTCTATTCTAGTCT+TGG | - | chr3.3:90880802-90880821 | None:intergenic | 40.0% | |
| CTGTCATGTCTCTTGCAAAT+AGG | + | chr3.3:90879264-90879283 | MS.gene40289:CDS | 40.0% | |
| CTTGCAAATAGGTCGTATGA+TGG | + | chr3.3:90879275-90879294 | MS.gene40289:CDS | 40.0% | |
| CTTTGGCCACGTAATATTGA+AGG | - | chr3.3:90881324-90881343 | None:intergenic | 40.0% | |
| GAACAAATCAAGAAGACCTG+GGG | + | chr3.3:90879428-90879447 | MS.gene40289:CDS | 40.0% | |
| GAATAGACAGACTGAAAGAC+TGG | + | chr3.3:90880808-90880827 | MS.gene40289:CDS | 40.0% | |
| GCGAATCATAAATGAAACCC+TGG | + | chr3.3:90881225-90881244 | MS.gene40289:CDS | 40.0% | |
| GCTTATGAGGAATCAGATGA+GGG | + | chr3.3:90878285-90878304 | MS.gene40289:CDS | 40.0% | |
| GGAAACGTTGAAACTATGGA+GGG | + | chr3.3:90879698-90879717 | MS.gene40289:CDS | 40.0% | |
| GGAACAAATCAAGAAGACCT+GGG | + | chr3.3:90879427-90879446 | MS.gene40289:CDS | 40.0% | |
| GGCATTATCTTTAACGAAGG+TGG | - | chr3.3:90877902-90877921 | None:intergenic | 40.0% | |
| GGCTCAAAATTTCAAGGCTT+TGG | + | chr3.3:90881516-90881535 | MS.gene40289:CDS | 40.0% | |
| GGTGGCATTATCTTTAACGA+AGG | - | chr3.3:90877905-90877924 | None:intergenic | 40.0% | |
| TCAGTCCAATACTCAAGAGA+TGG | + | chr3.3:90880517-90880536 | MS.gene40289:CDS | 40.0% | |
| TCATAAATCCGGAGATTCAG+AGG | - | chr3.3:90879338-90879357 | None:intergenic | 40.0% | |
| TCGTGGAAACGTTGAAACTA+TGG | + | chr3.3:90879694-90879713 | MS.gene40289:CDS | 40.0% | |
| TGACTACACTAGATTCGCAT+TGG | + | chr3.3:90878889-90878908 | MS.gene40289:intron | 40.0% | |
| TGATAGAAATCTGCAGCAAG+AGG | + | chr3.3:90880833-90880852 | MS.gene40289:CDS | 40.0% | |
| TGGAAACGTTGAAACTATGG+AGG | + | chr3.3:90879697-90879716 | MS.gene40289:CDS | 40.0% | |
| TGGAACAAATCAAGAAGACC+TGG | + | chr3.3:90879426-90879445 | MS.gene40289:CDS | 40.0% | |
| TTAAGCACTATTACCATCGC+AGG | - | chr3.3:90879944-90879963 | None:intergenic | 40.0% | |
| TTATTCTTCCCGGTTTCGAT+GGG | - | chr3.3:90879218-90879237 | None:intergenic | 40.0% | |
| TTGTGAACTTCATTGCAGGT+TGG | + | chr3.3:90878981-90879000 | MS.gene40289:intron | 40.0% | |
| TTTATGCGAACACAGAGTTG+TGG | - | chr3.3:90881621-90881640 | None:intergenic | 40.0% | |
| ! | AATGCAGGATGCATTGGTAT+TGG | - | chr3.3:90881268-90881287 | None:intergenic | 40.0% |
| ! | ACAAATGGGGATAGCTCTTT+TGG | + | chr3.3:90881591-90881610 | MS.gene40289:CDS | 40.0% |
| ! | CAAATGGGGATAGCTCTTTT+GGG | + | chr3.3:90881592-90881611 | MS.gene40289:CDS | 40.0% |
| ! | CAAGGCAAACAAGCTTTATC+AGG | + | chr3.3:90880171-90880190 | MS.gene40289:intron | 40.0% |
| ! | CTCTTTAGAGACCTTTCCTT+AGG | + | chr3.3:90877842-90877861 | MS.gene40289:CDS | 40.0% |
| ! | GCAGATTATTCATGCTGCTT+TGG | + | chr3.3:90879187-90879206 | MS.gene40289:CDS | 40.0% |
| ! | TGGATTCAGATGACTGCTTT+TGG | + | chr3.3:90878491-90878510 | MS.gene40289:intron | 40.0% |
| ! | TGTTGAGTTGTGCAAGTAAC+GGG | + | chr3.3:90880195-90880214 | MS.gene40289:intron | 40.0% |
| ! | TTGTTTGTATTGCTTGCTGG+AGG | + | chr3.3:90882008-90882027 | MS.gene40289:CDS | 40.0% |
| !! | AGGTAATGGAATTCTAGACC+TGG | - | chr3.3:90882252-90882271 | None:intergenic | 40.0% |
| !! | ATTTTGGGTGACTAAGCAAG+TGG | + | chr3.3:90880101-90880120 | MS.gene40289:intron | 40.0% |
| !! | CATTGACTTCGATATTGGGA+TGG | + | chr3.3:90879633-90879652 | MS.gene40289:CDS | 40.0% |
| !! | CTAGCTTTTCATTAACTGCC+AGG | - | chr3.3:90880494-90880513 | None:intergenic | 40.0% |
| !! | TAAGCGTGTGTTTGGCTTTA+CGG | - | chr3.3:90878827-90878846 | None:intergenic | 40.0% |
| !! | TATCCTTCCTGATTTGCTTG+TGG | - | chr3.3:90881181-90881200 | None:intergenic | 40.0% |
| !! | TCTCACTGATTCATGTCACT+GGG | + | chr3.3:90879301-90879320 | MS.gene40289:CDS | 40.0% |
| !! | TTTCATCGATTTGTTGCCAC+TGG | + | chr3.3:90879503-90879522 | MS.gene40289:CDS | 40.0% |
| !! | TTTTGGGTGACTAAGCAAGT+GGG | + | chr3.3:90880102-90880121 | MS.gene40289:intron | 40.0% |
| !!! | GCTTTTGGTTTGAAATCTCC+TGG | + | chr3.3:90878178-90878197 | MS.gene40289:CDS | 40.0% |
| AACTCGCAGGTTGCAACAAA+TGG | + | chr3.3:90881576-90881595 | MS.gene40289:CDS | 45.0% | |
| AACTTCTACGGCTGCTAGTA+AGG | + | chr3.3:90878147-90878166 | MS.gene40289:CDS | 45.0% | |
| AAGAAGACCTGGGGAATACT+TGG | + | chr3.3:90879437-90879456 | MS.gene40289:CDS | 45.0% | |
| AATGCAGCAACTCAAGGCTT+CGG | + | chr3.3:90879040-90879059 | MS.gene40289:CDS | 45.0% | |
| ACACCACACTGTACATGCAT+TGG | - | chr3.3:90878401-90878420 | None:intergenic | 45.0% | |
| ACAGAAGCTCCAAATCCATC+TGG | - | chr3.3:90879529-90879548 | None:intergenic | 45.0% | |
| ACTCAAGAGATGGCATCCTT+TGG | + | chr3.3:90880527-90880546 | MS.gene40289:CDS | 45.0% | |
| ACTCGCAGGTTGCAACAAAT+GGG | + | chr3.3:90881577-90881596 | MS.gene40289:CDS | 45.0% | |
| ACTCGTTTCCATAGCATGCA+TGG | - | chr3.3:90880578-90880597 | None:intergenic | 45.0% | |
| AGAACTACGAAGAACCTGCA+TGG | - | chr3.3:90879246-90879265 | None:intergenic | 45.0% | |
| AGCGGCTAAGATATTGCTTG+AGG | + | chr3.3:90879742-90879761 | MS.gene40289:CDS | 45.0% | |
| AGGAATTCAGCAGCTATGTG+AGG | + | chr3.3:90881785-90881804 | MS.gene40289:CDS | 45.0% | |
| AGGTTTATCATCTCCTGCGA+TGG | + | chr3.3:90879928-90879947 | MS.gene40289:intron | 45.0% | |
| AGTCCACAAGCAAATCAGGA+AGG | + | chr3.3:90881175-90881194 | MS.gene40289:CDS | 45.0% | |
| AGTTGCTGCATTAGCTCAAG+TGG | - | chr3.3:90879032-90879051 | None:intergenic | 45.0% | |
| ATAAGCTCCCCAACCGTTAA+CGG | - | chr3.3:90878271-90878290 | None:intergenic | 45.0% | |
| ATCACTTCAGGAAGCAATGC+AGG | - | chr3.3:90881283-90881302 | None:intergenic | 45.0% | |
| ATGGGATTCCTCTGAATCTC+CGG | + | chr3.3:90879327-90879346 | MS.gene40289:CDS | 45.0% | |
| ATTCATGTCACTGGGCAGAT+GGG | + | chr3.3:90879309-90879328 | MS.gene40289:CDS | 45.0% | |
| ATTGCACCTTCTGCTTCGTA+AGG | - | chr3.3:90880756-90880775 | None:intergenic | 45.0% | |
| CAGGATTGATCCGTTTCTTC+AGG | + | chr3.3:90881887-90881906 | MS.gene40289:CDS | 45.0% | |
| CATCCTTTGCAAGAATGGCA+AGG | - | chr3.3:90880464-90880483 | None:intergenic | 45.0% | |
| CATGGACTCGTTATTCTTCC+CGG | - | chr3.3:90879228-90879247 | None:intergenic | 45.0% | |
| CCAGAACATCAAATTCACCC+AGG | - | chr3.3:90881659-90881678 | None:intergenic | 45.0% | |
| CCTGGGTGAATTTGATGTTC+TGG | + | chr3.3:90881656-90881675 | MS.gene40289:CDS | 45.0% | |
| CGCAGAACTTCAACAGAAGA+TGG | - | chr3.3:90881208-90881227 | None:intergenic | 45.0% | |
| CGCTCAAGTTCCTGAAGAAA+CGG | - | chr3.3:90881900-90881919 | None:intergenic | 45.0% | |
| CTCTTCTTAGAACCAGAACC+AGG | - | chr3.3:90878199-90878218 | None:intergenic | 45.0% | |
| CTGAAGAAACGGATCAATCC+TGG | - | chr3.3:90881889-90881908 | None:intergenic | 45.0% | |
| CTGAATTCCTTCAAGACACG+CGG | - | chr3.3:90881775-90881794 | None:intergenic | 45.0% | |
| CTTTGCAAGAATGGCAAGGA+GGG | - | chr3.3:90880460-90880479 | None:intergenic | 45.0% | |
| GAAGAATAACGAGTCCATGC+AGG | + | chr3.3:90879229-90879248 | MS.gene40289:CDS | 45.0% | |
| GAAGATCTCGTAGGCAGTTA+AGG | - | chr3.3:90877999-90878018 | None:intergenic | 45.0% | |
| GAAGCTGAAAGAATGCATCC+AGG | - | chr3.3:90881246-90881265 | None:intergenic | 45.0% | |
| GATAGCTGTTGAGGATTCAG+TGG | + | chr3.3:90880689-90880708 | MS.gene40289:CDS | 45.0% | |
| GCAGAGTTGGACTTATCCAA+AGG | - | chr3.3:90879152-90879171 | None:intergenic | 45.0% | |
| GCCATTCTTGCAAAGGATGT+AGG | + | chr3.3:90880465-90880484 | MS.gene40289:CDS | 45.0% | |
| GCCTACATCCTTTGCAAGAA+TGG | - | chr3.3:90880469-90880488 | None:intergenic | 45.0% | |
| GCCTCATTGAGCAGTTTAGA+CGG | + | chr3.3:90882198-90882217 | MS.gene40289:CDS | 45.0% | |
| GGATCAATCCTGGAAGATGA+GGG | - | chr3.3:90881879-90881898 | None:intergenic | 45.0% | |
| GGATGCCATCTCTTGAGTAT+TGG | - | chr3.3:90880525-90880544 | None:intergenic | 45.0% | |
| GGCTGCTAGTAAGGTTAAGA+AGG | + | chr3.3:90878156-90878175 | MS.gene40289:CDS | 45.0% | |
| GTATTCATCGGAGAGATTGG+TGG | - | chr3.3:90877972-90877991 | None:intergenic | 45.0% | |
| GTTATTCTTCCCGGTTTCGA+TGG | - | chr3.3:90879219-90879238 | None:intergenic | 45.0% | |
| GTTCAATCCAAGTATTCCCC+AGG | - | chr3.3:90879447-90879466 | None:intergenic | 45.0% | |
| GTTTCCATAGCATGCATGGA+GGG | - | chr3.3:90880574-90880593 | None:intergenic | 45.0% | |
| TACGTGGCCAAAGCTAAATC+TGG | + | chr3.3:90881331-90881350 | MS.gene40289:CDS | 45.0% | |
| TATTGGGATGGGCAGAGAAA+AGG | + | chr3.3:90879645-90879664 | MS.gene40289:CDS | 45.0% | |
| TCCGTCTAAACTGCTCAATG+AGG | - | chr3.3:90882202-90882221 | None:intergenic | 45.0% | |
| TCGTTTCAATTTCCCCTGAC+CGG | - | chr3.3:90878248-90878267 | None:intergenic | 45.0% | |
| TCTAAGAAGAGTCCTGGTTC+TGG | + | chr3.3:90878208-90878227 | MS.gene40289:CDS | 45.0% | |
| TCTTCTCTTGGAATGGCCTA+AGG | - | chr3.3:90877861-90877880 | None:intergenic | 45.0% | |
| TCTTGGAATGGCCTAAGGAA+AGG | - | chr3.3:90877856-90877875 | None:intergenic | 45.0% | |
| TGAAACGACCGTTAACGGTT+GGG | + | chr3.3:90878260-90878279 | MS.gene40289:CDS | 45.0% | |
| TGAGCTAATGCAGCAACTCA+AGG | + | chr3.3:90879034-90879053 | MS.gene40289:CDS | 45.0% | |
| TGGAAGAAGGATTGAGTCTG+TGG | + | chr3.3:90879001-90879020 | MS.gene40289:CDS | 45.0% | |
| TTCTCAGAAGAGAAACTCGC+AGG | + | chr3.3:90881563-90881582 | MS.gene40289:CDS | 45.0% | |
| TTGAAACGACCGTTAACGGT+TGG | + | chr3.3:90878259-90878278 | MS.gene40289:CDS | 45.0% | |
| TTGCTTCCTGAAGTGATGCA+TGG | + | chr3.3:90881286-90881305 | MS.gene40289:CDS | 45.0% | |
| TTGGAGTCCACAAGCAAATC+AGG | + | chr3.3:90881171-90881190 | MS.gene40289:CDS | 45.0% | |
| TTTAAGAGCTGCAGACCAGT+TGG | + | chr3.3:90880650-90880669 | MS.gene40289:CDS | 45.0% | |
| TTTGCAAGAATGGCAAGGAG+GGG | - | chr3.3:90880459-90880478 | None:intergenic | 45.0% | |
| ! | ACCACAGCCAGATTTAGCTT+TGG | - | chr3.3:90881341-90881360 | None:intergenic | 45.0% |
| ! | CTTCATTGCAGGTTGGAAGA+AGG | + | chr3.3:90878988-90879007 | MS.gene40289:intron | 45.0% |
| ! | CTTTTGCAACTTCAGCTAGC+TGG | - | chr3.3:90879565-90879584 | None:intergenic | 45.0% |
| ! | GAGGTATTCATCGGAGAGAT+TGG | - | chr3.3:90877975-90877994 | None:intergenic | 45.0% |
| ! | GGTTTGAAATCTCCTGGTTC+TGG | + | chr3.3:90878184-90878203 | MS.gene40289:CDS | 45.0% |
| !! | AAGGAGCTGTTTTGGGCAAA+TGG | + | chr3.3:90882092-90882111 | MS.gene40289:CDS | 45.0% |
| !! | AGGAGCTGTTTTGGGCAAAT+GGG | + | chr3.3:90882093-90882112 | MS.gene40289:CDS | 45.0% |
| !! | ATGGAGGGCATTGTCTCTTT+AGG | + | chr3.3:90879713-90879732 | MS.gene40289:CDS | 45.0% |
| !! | CTCTCACTGATTCATGTCAC+TGG | + | chr3.3:90879300-90879319 | MS.gene40289:CDS | 45.0% |
| !! | TCTGGTTCTAAGAAGAGTCC+TGG | + | chr3.3:90878202-90878221 | MS.gene40289:CDS | 45.0% |
| !! | TGGAGGGCATTGTCTCTTTA+GGG | + | chr3.3:90879714-90879733 | MS.gene40289:CDS | 45.0% |
| AAAGGGGAAGGATAGACCTC+AGG | - | chr3.3:90882160-90882179 | None:intergenic | 50.0% | |
| AAGGGGAAGGATAGACCTCA+GGG | - | chr3.3:90882159-90882178 | None:intergenic | 50.0% | |
| ACAGGTTTGCAACTACCCTG+AGG | + | chr3.3:90882141-90882160 | MS.gene40289:CDS | 50.0% | |
| ACCAGAAGAGGTTCGACATG+CGG | - | chr3.3:90878026-90878045 | None:intergenic | 50.0% | |
| ACTGAGAGGCTTACCAGAAG+AGG | - | chr3.3:90878038-90878057 | None:intergenic | 50.0% | |
| AGAAAGCAGACTCAAGCAGG+AGG | + | chr3.3:90880406-90880425 | MS.gene40289:CDS | 50.0% | |
| ATAGTGCATCTCGTCAGTGC+CGG | - | chr3.3:90881495-90881514 | None:intergenic | 50.0% | |
| ATGCCTCCTTACGAAGCAGA+AGG | + | chr3.3:90880747-90880766 | MS.gene40289:CDS | 50.0% | |
| ATGGCAGAAGAGGACTCTCA+AGG | + | chr3.3:90879091-90879110 | MS.gene40289:CDS | 50.0% | |
| CCTCAACAGCTATCTGCACA+AGG | - | chr3.3:90880683-90880702 | None:intergenic | 50.0% | |
| CCTCCTTGCCATTCTTGCAA+AGG | + | chr3.3:90880458-90880477 | MS.gene40289:CDS | 50.0% | |
| CCTTGTGCAGATAGCTGTTG+AGG | + | chr3.3:90880680-90880699 | MS.gene40289:CDS | 50.0% | |
| CCTTTGCAAGAATGGCAAGG+AGG | - | chr3.3:90880461-90880480 | None:intergenic | 50.0% | |
| CGGATCAATCCTGGAAGATG+AGG | - | chr3.3:90881880-90881899 | None:intergenic | 50.0% | |
| CGTTTCCATAGCATGCATGG+AGG | - | chr3.3:90880575-90880594 | None:intergenic | 50.0% | |
| CTCAATGAGGCTCTCTGTGT+CGG | - | chr3.3:90882189-90882208 | None:intergenic | 50.0% | |
| CTCGCAGGTTGCAACAAATG+GGG | + | chr3.3:90881578-90881597 | MS.gene40289:CDS | 50.0% | |
| GAAACGACCGTTAACGGTTG+GGG | + | chr3.3:90878261-90878280 | MS.gene40289:CDS | 50.0% | |
| GAAAGCAGACTCAAGCAGGA+GGG | + | chr3.3:90880407-90880426 | MS.gene40289:CDS | 50.0% | |
| GAAGAGGACTCTCAAGGTTC+TGG | + | chr3.3:90879097-90879116 | MS.gene40289:CDS | 50.0% | |
| GAGCTTCTGTCTGATGCTGA+TGG | + | chr3.3:90879539-90879558 | MS.gene40289:CDS | 50.0% | |
| GATTCAGTGGACAGTGACGA+TGG | + | chr3.3:90880702-90880721 | MS.gene40289:CDS | 50.0% | |
| GATTCATGTCACTGGGCAGA+TGG | + | chr3.3:90879308-90879327 | MS.gene40289:CDS | 50.0% | |
| GCACAAGGTCTTTCTCCAAC+TGG | - | chr3.3:90880668-90880687 | None:intergenic | 50.0% | |
| GCCAAAGCTAAATCTGGCTG+TGG | + | chr3.3:90881337-90881356 | MS.gene40289:CDS | 50.0% | |
| GCGTTGCTCAGAATTTCTGC+TGG | + | chr3.3:90878340-90878359 | MS.gene40289:CDS | 50.0% | |
| GCTCAGAATTTCTGCTGGAC+AGG | + | chr3.3:90878345-90878364 | MS.gene40289:CDS | 50.0% | |
| GGAAGCAATGCAGGATGCAT+TGG | - | chr3.3:90881274-90881293 | None:intergenic | 50.0% | |
| TAACGGTTGGGGAGCTTATG+AGG | + | chr3.3:90878272-90878291 | MS.gene40289:CDS | 50.0% | |
| TCTACGCCATGCATCACTTC+AGG | - | chr3.3:90881295-90881314 | None:intergenic | 50.0% | |
| TCTCGTAGGCAGTTAAGGTG+AGG | - | chr3.3:90877994-90878013 | None:intergenic | 50.0% | |
| TGCTTGTGGACTCCAAAGCT+AGG | - | chr3.3:90881167-90881186 | None:intergenic | 50.0% | |
| TGGAGAAAGCAGACTCAAGC+AGG | + | chr3.3:90880403-90880422 | MS.gene40289:CDS | 50.0% | |
| TGGTGGAAAGTTGACCGAGT+GGG | - | chr3.3:90877955-90877974 | None:intergenic | 50.0% | |
| TGTCCGGAAGTTGGAGGTAA+TGG | - | chr3.3:90882266-90882285 | None:intergenic | 50.0% | |
| TTGCAAGAATGGCAAGGAGG+GGG | - | chr3.3:90880458-90880477 | None:intergenic | 50.0% | |
| TTGGAGATCCCTCATCTTCC+AGG | + | chr3.3:90881868-90881887 | MS.gene40289:CDS | 50.0% | |
| TTGGATAGGCCCATCGAAAC+CGG | + | chr3.3:90879206-90879225 | MS.gene40289:CDS | 50.0% | |
| TTGGTGGAAAGTTGACCGAG+TGG | - | chr3.3:90877956-90877975 | None:intergenic | 50.0% | |
| ! | ATTTGTTGCCACTGGCCAGA+TGG | + | chr3.3:90879511-90879530 | MS.gene40289:CDS | 50.0% |
| ! | CTCTGTGTCGGTCCTGAAAA+GGG | - | chr3.3:90882177-90882196 | None:intergenic | 50.0% |
| ! | GCACTGACGAGATGCACTAT+TGG | + | chr3.3:90881495-90881514 | MS.gene40289:CDS | 50.0% |
| ! | GGTCTATCCTTCCCCTTTTC+AGG | + | chr3.3:90882162-90882181 | MS.gene40289:CDS | 50.0% |
| ! | TCTCTGTGTCGGTCCTGAAA+AGG | - | chr3.3:90882178-90882197 | None:intergenic | 50.0% |
| ! | TCTGTGTCGGTCCTGAAAAG+GGG | - | chr3.3:90882176-90882195 | None:intergenic | 50.0% |
| ! | TGTCTCTTTAGGGGTAGCAG+CGG | + | chr3.3:90879724-90879743 | MS.gene40289:CDS | 50.0% |
| !! | CTGTTTTGGGCAAATGGGGA+CGG | + | chr3.3:90882098-90882117 | MS.gene40289:CDS | 50.0% |
| !! | GATGAGGGTTTCTGAAGCCA+TGG | + | chr3.3:90878300-90878319 | MS.gene40289:CDS | 50.0% |
| !! | GGAGCTGTTTTGGGCAAATG+GGG | + | chr3.3:90882094-90882113 | MS.gene40289:CDS | 50.0% |
| !! | GGAGGGCATTGTCTCTTTAG+GGG | + | chr3.3:90879715-90879734 | MS.gene40289:CDS | 50.0% |
| !! | TCTACGTACTGCTTTTGCCC+AGG | + | chr3.3:90879847-90879866 | MS.gene40289:CDS | 50.0% |
| ACAGCAAGACCTGCTGCCAA+AGG | - | chr3.3:90880546-90880565 | None:intergenic | 55.0% | |
| ACCTCCAACTTCCGGACAGT+GGG | + | chr3.3:90882268-90882287 | MS.gene40289:CDS | 55.0% | |
| ACGTCTCACACGCGAATCCA+TGG | - | chr3.3:90878320-90878339 | None:intergenic | 55.0% | |
| AGATGGCATCCTTTGGCAGC+AGG | + | chr3.3:90880534-90880553 | MS.gene40289:CDS | 55.0% | |
| ATCAGATGGACCCCACTGTC+CGG | - | chr3.3:90882282-90882301 | None:intergenic | 55.0% | |
| ATTCCTTCAAGACACGCGGC+TGG | - | chr3.3:90881771-90881790 | None:intergenic | 55.0% | |
| CAATTTCCCCTGACCGGAAC+CGG | - | chr3.3:90878242-90878261 | None:intergenic | 55.0% | |
| CTCCAAATCCATCTGGCCAG+TGG | - | chr3.3:90879522-90879541 | None:intergenic | 55.0% | |
| GAAAGTTGACCGAGTGGGGA+GGG | - | chr3.3:90877950-90877969 | None:intergenic | 55.0% | |
| GCACCTTCTGCTTCGTAAGG+AGG | - | chr3.3:90880753-90880772 | None:intergenic | 55.0% | |
| GCTACCCTCCATGCATGCTA+TGG | + | chr3.3:90880567-90880586 | MS.gene40289:CDS | 55.0% | |
| GCTATTGCACGGATGCACCT+AGG | - | chr3.3:90880240-90880259 | None:intergenic | 55.0% | |
| GGTGGAAAGTTGACCGAGTG+GGG | - | chr3.3:90877954-90877973 | None:intergenic | 55.0% | |
| TACCTCCAACTTCCGGACAG+TGG | + | chr3.3:90882267-90882286 | MS.gene40289:CDS | 55.0% | |
| TCAGTGGACAGTGACGATGG+TGG | + | chr3.3:90880705-90880724 | MS.gene40289:CDS | 55.0% | |
| TGCAAAGGATGTAGGCAGCC+TGG | + | chr3.3:90880473-90880492 | MS.gene40289:CDS | 55.0% | |
| TGGATAGGCCCATCGAAACC+GGG | + | chr3.3:90879207-90879226 | MS.gene40289:CDS | 55.0% | |
| TGTCGGTCCTGAAAAGGGGA+AGG | - | chr3.3:90882172-90882191 | None:intergenic | 55.0% | |
| TTCCGGGAAAAAGCCCGAGA+GGG | - | chr3.3:90882035-90882054 | None:intergenic | 55.0% | |
| TTTGGCAGCAGGTCTTGCTG+TGG | + | chr3.3:90880545-90880564 | MS.gene40289:CDS | 55.0% | |
| ! | GAGGACTCTCAAGGTTCTGG+AGG | + | chr3.3:90879100-90879119 | MS.gene40289:CDS | 55.0% |
| ! | TGCCACTGGCCAGATGGATT+TGG | + | chr3.3:90879517-90879536 | MS.gene40289:CDS | 55.0% |
| !! | ACTCTCAAGGTTCTGGAGGC+TGG | + | chr3.3:90879104-90879123 | MS.gene40289:CDS | 55.0% |
| !! | CCTGGTTCTGGTTCTGCTTC+CGG | + | chr3.3:90878220-90878239 | MS.gene40289:CDS | 55.0% |
| !! | TCTGGTTCTGCTTCCGGTTC+CGG | + | chr3.3:90878226-90878245 | MS.gene40289:CDS | 55.0% |
| AGTCCAACTCTGCTGCGCAG+CGG | + | chr3.3:90879159-90879178 | MS.gene40289:CDS | 60.0% | |
| CCGGAAGCAGAACCAGAACC+AGG | - | chr3.3:90878223-90878242 | None:intergenic | 60.0% | |
| CCTCCAACTTCCGGACAGTG+GGG | + | chr3.3:90882269-90882288 | MS.gene40289:CDS | 60.0% | |
| CTTCCGGGAAAAAGCCCGAG+AGG | - | chr3.3:90882036-90882055 | None:intergenic | 60.0% | |
| GACGATCTTCCCTCCCCACT+CGG | + | chr3.3:90877938-90877957 | MS.gene40289:CDS | 60.0% | |
| GAGTGGGGAGGGAAGATCGT+CGG | - | chr3.3:90877939-90877958 | None:intergenic | 60.0% | |
| GCCGCATGTCGAACCTCTTC+TGG | + | chr3.3:90878022-90878041 | MS.gene40289:CDS | 60.0% | |
| GGAAAGTTGACCGAGTGGGG+AGG | - | chr3.3:90877951-90877970 | None:intergenic | 60.0% | |
| TCCGGGAAAAAGCCCGAGAG+GGG | - | chr3.3:90882034-90882053 | None:intergenic | 60.0% | |
| TCTCCAGCCGCGTGTCTTGA+AGG | + | chr3.3:90881765-90881784 | MS.gene40289:CDS | 60.0% | |
| TCTGCTTCCGGTTCCGGTCA+GGG | + | chr3.3:90878232-90878251 | MS.gene40289:CDS | 60.0% | |
| TGCGGCGACGAAGATCTCGT+AGG | - | chr3.3:90878008-90878027 | None:intergenic | 60.0% | |
| TTCTGCTTCCGGTTCCGGTC+AGG | + | chr3.3:90878231-90878250 | MS.gene40289:CDS | 60.0% | |
| ! | CCAAGCGGCGAGTTCTGACT+CGG | - | chr3.3:90878112-90878131 | None:intergenic | 60.0% |
| !! | CTCGTCAGTGCCGGCATTGT+TGG | - | chr3.3:90881486-90881505 | None:intergenic | 60.0% |
| !! | CTCTCGGGCTTTTTCCCGGA+AGG | + | chr3.3:90882034-90882053 | MS.gene40289:CDS | 60.0% |
| !! | GCAAGGAGGGGGAGAGCATT+TGG | - | chr3.3:90880447-90880466 | None:intergenic | 60.0% |
| CCCCACTGTCCGGAAGTTGG+AGG | - | chr3.3:90882272-90882291 | None:intergenic | 65.0% | |
| CCGAGTCAGAACTCGCCGCT+TGG | + | chr3.3:90878109-90878128 | MS.gene40289:CDS | 65.0% | |
| CTGCTTCCGGTTCCGGTCAG+GGG | + | chr3.3:90878233-90878252 | MS.gene40289:CDS | 65.0% | |
| GAGGGAAGATCGTCGGCGGT+AGG | - | chr3.3:90877932-90877951 | None:intergenic | 65.0% | |
| GGAAGATCGTCGGCGGTAGG+CGG | - | chr3.3:90877929-90877948 | None:intergenic | 65.0% | |
| GGACCCCACTGTCCGGAAGT+TGG | - | chr3.3:90882275-90882294 | None:intergenic | 65.0% | |
| TGGGGAGGGAAGATCGTCGG+CGG | - | chr3.3:90877936-90877955 | None:intergenic | 65.0% | |
| ! | TGCTTGCTGGAGGCCCCTCT+CGG | + | chr3.3:90882018-90882037 | MS.gene40289:CDS | 65.0% |
| !! | GCCCCTCTCGGGCTTTTTCC+CGG | + | chr3.3:90882030-90882049 | MS.gene40289:CDS | 65.0% |
| !! | GGAGGGGGAGAGCATTTGGC+TGG | - | chr3.3:90880443-90880462 | None:intergenic | 65.0% |
| ACTCTGCTGCGCAGCGGCTG+CGG | + | chr3.3:90879165-90879184 | MS.gene40289:CDS | 70.0% | |
| AGATCGTCGGCGGTAGGCGG+TGG | - | chr3.3:90877926-90877945 | None:intergenic | 70.0% | |
| CAGCCGCTGCGCAGCAGAGT+TGG | - | chr3.3:90879165-90879184 | None:intergenic | 70.0% | |
| ! | GCTTGCTGGAGGCCCCTCTC+GGG | + | chr3.3:90882019-90882038 | MS.gene40289:CDS | 70.0% |
| TCGTCGGCGGTAGGCGGTGG+TGG | - | chr3.3:90877923-90877942 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 90877830 | 90882394 | 90877830 | ID=MS.gene40289 |
| chr3.3 | mRNA | 90877830 | 90882394 | 90877830 | ID=MS.gene40289.t1;Parent=MS.gene40289 |
| chr3.3 | exon | 90877830 | 90878366 | 90877830 | ID=MS.gene40289.t1.exon1;Parent=MS.gene40289.t1 |
| chr3.3 | CDS | 90877830 | 90878366 | 90877830 | ID=cds.MS.gene40289.t1;Parent=MS.gene40289.t1 |
| chr3.3 | exon | 90878999 | 90879868 | 90878999 | ID=MS.gene40289.t1.exon2;Parent=MS.gene40289.t1 |
| chr3.3 | CDS | 90878999 | 90879868 | 90878999 | ID=cds.MS.gene40289.t1;Parent=MS.gene40289.t1 |
| chr3.3 | exon | 90880399 | 90880854 | 90880399 | ID=MS.gene40289.t1.exon3;Parent=MS.gene40289.t1 |
| chr3.3 | CDS | 90880399 | 90880854 | 90880399 | ID=cds.MS.gene40289.t1;Parent=MS.gene40289.t1 |
| chr3.3 | exon | 90881169 | 90881358 | 90881169 | ID=MS.gene40289.t1.exon4;Parent=MS.gene40289.t1 |
| chr3.3 | CDS | 90881169 | 90881358 | 90881169 | ID=cds.MS.gene40289.t1;Parent=MS.gene40289.t1 |
| chr3.3 | exon | 90881463 | 90882394 | 90881463 | ID=MS.gene40289.t1.exon5;Parent=MS.gene40289.t1 |
| chr3.3 | CDS | 90881463 | 90882394 | 90881463 | ID=cds.MS.gene40289.t1;Parent=MS.gene40289.t1 |
| Gene Sequence |
| Protein sequence |
