AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40388

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40388.t1 MTR_7g095220 99.710 345 1 0 1 345 1 345 0.0 707
MS.gene40388.t1 MTR_3g085570 30.620 258 157 7 2 250 33 277 2.04e-25 105
MS.gene40388.t1 MTR_8g080370 30.415 217 136 5 2 214 49 254 2.97e-22 97.1
MS.gene40388.t1 MTR_8g085600 30.769 195 121 5 4 194 77 261 2.89e-21 94.4
MS.gene40388.t1 MTR_4g114110 30.986 213 132 6 2 210 79 280 2.96e-20 91.7
MS.gene40388.t1 MTR_2g008440 31.004 229 122 6 2 194 41 269 4.89e-19 88.2
MS.gene40388.t1 MTR_2g102370 28.111 217 129 6 3 200 2 210 2.42e-18 85.5
MS.gene40388.t1 MTR_2g094093 27.554 323 187 15 4 300 20 321 3.72e-18 84.7
MS.gene40388.t1 MTR_8g030940 25.723 311 197 10 4 294 25 321 1.68e-17 82.8
MS.gene40388.t1 MTR_4g011900 26.522 230 142 6 3 214 4 224 3.54e-17 82.0
MS.gene40388.t1 MTR_0105s0130 23.148 324 201 10 4 297 89 394 4.22e-17 82.4
MS.gene40388.t1 MTR_0345s0010 23.148 324 201 10 4 297 89 394 5.28e-17 82.0
MS.gene40388.t1 MTR_0105s0170 23.148 324 201 10 4 297 102 407 7.06e-17 81.6
MS.gene40388.t1 MTR_1330s0010 23.148 324 201 10 4 297 102 407 7.58e-17 81.6
MS.gene40388.t1 MTR_0105s0040 22.162 370 233 12 4 343 187 531 1.35e-16 81.3
MS.gene40388.t1 MTR_0105s0020 22.840 324 202 10 4 297 89 394 1.91e-16 80.5
MS.gene40388.t1 MTR_2g019230 29.493 217 136 7 4 213 52 258 9.38e-16 78.2
MS.gene40388.t1 MTR_7g096420 28.899 218 140 7 4 210 34 247 1.69e-15 77.4
MS.gene40388.t1 MTR_3g108860 28.767 219 119 6 3 213 16 205 7.43e-15 75.1
MS.gene40388.t1 MTR_7g029290 25.079 315 191 13 8 295 59 355 7.63e-15 75.5
MS.gene40388.t1 MTR_6g023805 24.380 242 148 7 8 231 60 284 4.97e-14 72.8
MS.gene40388.t1 MTR_0496s0010 21.184 321 207 9 4 295 71 374 6.11e-14 72.8
MS.gene40388.t1 MTR_8g085650 24.830 294 160 9 3 259 6 275 1.66e-13 70.9
MS.gene40388.t1 MTR_4g022400 22.523 333 196 10 2 297 66 373 2.56e-13 70.9
MS.gene40388.t1 MTR_7g070320 30.049 203 111 10 65 253 489 674 2.69e-13 71.2
MS.gene40388.t1 MTR_8g468030 23.645 203 137 4 13 214 159 344 1.41e-12 68.9
MS.gene40388.t1 MTR_4g108280 24.186 215 143 5 2 214 29 225 2.16e-12 67.8
MS.gene40388.t1 MTR_3g094850 27.136 199 118 4 2 192 7 186 4.16e-12 67.0
MS.gene40388.t1 MTR_4g022260 21.605 324 206 9 4 297 71 376 6.29e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40388.t1 AT3G63220 67.536 345 112 0 1 345 1 345 1.82e-180 503
MS.gene40388.t1 AT3G63220 67.536 345 112 0 1 345 8 352 3.07e-180 503
MS.gene40388.t1 AT3G63220 67.536 345 112 0 1 345 8 352 3.07e-180 503
MS.gene40388.t1 AT1G16250 29.659 381 216 12 4 343 8 377 1.73e-34 130
MS.gene40388.t1 AT1G16250 29.659 381 216 12 4 343 8 377 1.73e-34 130
MS.gene40388.t1 AT1G67480 31.776 214 133 4 4 214 39 242 6.27e-24 101
MS.gene40388.t1 AT1G67480 31.776 214 133 4 4 214 39 242 6.27e-24 101
MS.gene40388.t1 AT1G67480 31.776 214 133 4 4 214 39 242 6.27e-24 101
MS.gene40388.t1 AT1G55270 32.308 195 118 5 4 194 78 262 2.83e-22 97.4
MS.gene40388.t1 AT2G24540 30.500 200 116 4 4 194 28 213 2.28e-21 94.4
MS.gene40388.t1 AT1G27420 27.692 195 132 3 2 191 8 198 1.04e-18 86.3
MS.gene40388.t1 AT4G03030 30.769 221 133 7 4 207 38 255 1.39e-18 86.7
MS.gene40388.t1 AT1G80440 27.876 226 140 6 3 214 2 218 2.92e-18 85.1
MS.gene40388.t1 AT1G14330 22.327 318 206 6 4 295 94 396 2.98e-17 82.8
MS.gene40388.t1 AT5G03000 28.814 236 141 8 4 229 39 257 2.94e-16 79.3
MS.gene40388.t1 AT5G03020 28.571 189 116 5 10 191 22 198 4.18e-16 78.6
MS.gene40388.t1 AT2G02870 23.013 239 169 3 4 242 117 340 1.84e-15 77.4
MS.gene40388.t1 AT2G02870 23.013 239 169 3 4 242 117 340 1.84e-15 77.4
MS.gene40388.t1 AT2G02870 23.013 239 169 3 4 242 117 340 1.84e-15 77.4
MS.gene40388.t1 AT5G02980 27.083 240 128 6 2 215 11 229 6.05e-15 75.1
MS.gene40388.t1 AT1G30090 30.594 219 131 9 4 213 53 259 8.36e-15 75.5
MS.gene40388.t1 AT3G27150 23.988 321 193 11 12 301 78 378 1.03e-14 75.1
MS.gene40388.t1 AT3G27150 23.988 321 193 11 12 301 78 378 1.03e-14 75.1
MS.gene40388.t1 AT1G26930 23.944 213 142 5 4 214 71 265 1.07e-13 72.0
MS.gene40388.t1 AT1G55270 32.812 128 74 4 69 194 19 136 1.72e-13 70.5
MS.gene40388.t1 AT2G22030 27.411 197 122 4 2 192 23 204 2.34e-13 70.9
MS.gene40388.t1 AT3G61350 29.255 188 111 6 4 183 21 194 5.48e-13 69.7
MS.gene40388.t1 AT3G61350 29.255 188 111 6 4 183 21 194 5.48e-13 69.7
MS.gene40388.t1 AT2G21950 28.634 227 135 8 2 214 18 231 6.74e-13 69.3
MS.gene40388.t1 AT3G43710 27.426 237 147 7 5 231 26 247 6.85e-13 69.3
MS.gene40388.t1 AT3G46050 26.364 220 139 6 5 215 18 223 3.36e-12 67.4
MS.gene40388.t1 AT4G19330 24.797 246 153 7 8 238 34 262 8.07e-12 66.2
MS.gene40388.t1 AT4G29370 26.577 222 136 9 2 213 23 227 1.18e-11 65.9
MS.gene40388.t1 AT4G33900 27.895 190 126 4 8 188 15 202 2.58e-11 64.7

Find 97 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGGCCCACTGTTGGATTA+TGG 0.219380 7.2:-14483854 None:intergenic
TAGCTTTGGATGGAGGTAAA+AGG 0.268586 7.2:-14483512 None:intergenic
CACCTTATTGCAACAGCATC+AGG 0.322901 7.2:-14483475 None:intergenic
GGGGCCCACTGTTGGATTAT+GGG 0.332679 7.2:-14483853 None:intergenic
AGAATTGGGTTTGCAATGAT+TGG 0.333271 7.2:+14484282 MS.gene40388:CDS
AGGTCCAATGGCAGTAGTTC+AGG 0.344387 7.2:+14484170 MS.gene40388:CDS
TAGAGGTTGTCTCTCGTTCT+TGG 0.348117 7.2:+14483533 MS.gene40388:CDS
TTATCAGATGTTGATGTTCT+CGG 0.371892 7.2:+14484375 MS.gene40388:CDS
TACAGTTGCCATACGTTCTC+TGG 0.374253 7.2:-14483643 None:intergenic
ACCGTGTCATTGGAGCTATT+TGG 0.377305 7.2:-14484425 None:intergenic
TACATGATTGGAGGCGTCAT+TGG 0.386097 7.2:+14484321 MS.gene40388:CDS
GCTGGAAAGTTGTTTGTCAT+TGG 0.404038 7.2:+14483751 MS.gene40388:CDS
GGTGATGATTTATACATGAT+TGG 0.404282 7.2:+14484309 MS.gene40388:CDS
AGAACATCAACATCTGATAA+TGG 0.409101 7.2:-14484372 None:intergenic
TCCCTGATGCTGTTGCAATA+AGG 0.411155 7.2:+14483473 MS.gene40388:CDS
GATGTTGATGTTCTCGGACT+TGG 0.411384 7.2:+14484381 MS.gene40388:CDS
TAGACAATGCAGGGGCTAGA+TGG 0.415228 7.2:+14484121 MS.gene40388:CDS
ATAATGTCTGAACTGATTGA+AGG 0.416927 7.2:+14483448 None:intergenic
ACCAATCACTATTCCTGAAC+AGG 0.430627 7.2:-14484052 None:intergenic
CAACTTTCCAGCTGCGGATA+CGG 0.435951 7.2:-14483740 None:intergenic
TTGGACCTGACAGATGGAAC+TGG 0.437231 7.2:+14484340 MS.gene40388:CDS
ACAGCATGCAAACATAGAAC+GGG 0.441369 7.2:-14483896 None:intergenic
AATGGGAAAATTGTTGTCGC+TGG 0.444336 7.2:+14483925 MS.gene40388:CDS
ATGACCCTCTTAGAGATCTC+TGG 0.444585 7.2:+14483665 MS.gene40388:CDS
CGAGAGACAACCTCTAGCTT+TGG 0.447447 7.2:-14483526 None:intergenic
GTACCACGACACCGTGTCAT+TGG 0.449231 7.2:-14484435 None:intergenic
GCCTGTTCAGGAATAGTGAT+TGG 0.449318 7.2:+14484051 MS.gene40388:CDS
TGATAGTTCTGGGCTATGAA+TGG 0.452045 7.2:-14483563 None:intergenic
ACTCAAAATTCAGCCTGTTC+AGG 0.453864 7.2:+14484039 MS.gene40388:CDS
AATCCAACAGTGGGCCCCTC+GGG 0.459039 7.2:+14483858 MS.gene40388:CDS
AGCAAGGTGCCTGGTCTTTG+AGG 0.462553 7.2:-14483707 None:intergenic
ATGTCCCAGTTCCATCTGTC+AGG 0.465004 7.2:-14484345 None:intergenic
ACCAGGCACCTTGCTCACTT+TGG 0.468091 7.2:+14483715 MS.gene40388:CDS
CGGTGTCGTGGTACCATTGT+TGG 0.476922 7.2:+14484444 MS.gene40388:CDS
CTGGTCTTTGAGGGAAGAAC+GGG 0.478632 7.2:-14483697 None:intergenic
GAGGAGTGTGAGTGGCTTCA+AGG 0.481039 7.2:+14484150 MS.gene40388:CDS
TAATCCAACAGTGGGCCCCT+CGG 0.485586 7.2:+14483857 MS.gene40388:CDS
ATCATAAAGCAAGACAAAGA+AGG 0.487099 7.2:+14484222 MS.gene40388:CDS
AGCTTTGGATGGAGGTAAAA+GGG 0.491803 7.2:-14483511 None:intergenic
AAGCCCGAGGGGCCCACTGT+TGG 0.494183 7.2:-14483861 None:intergenic
ACCAAAGTGAGCAAGGTGCC+TGG 0.495529 7.2:-14483716 None:intergenic
TTTGGTGCCGTATCCGCAGC+TGG 0.498780 7.2:+14483733 MS.gene40388:CDS
GGAGTCCATACATCCTTCTC+AGG 0.502640 7.2:-14483997 None:intergenic
ATGGGAAAATTGTTGTCGCT+GGG 0.504570 7.2:+14483926 MS.gene40388:CDS
GCAAGGTGCCTGGTCTTTGA+GGG 0.508996 7.2:-14483706 None:intergenic
GCATCCTGAACTACTGCCAT+TGG 0.513611 7.2:-14484174 None:intergenic
CCGTTCTTCCCTCAAAGACC+AGG 0.521677 7.2:+14483698 MS.gene40388:CDS
GGAAAGTTGTTTGTCATTGG+CGG 0.525545 7.2:+14483754 MS.gene40388:CDS
CACAGCATGCAAACATAGAA+CGG 0.534363 7.2:-14483897 None:intergenic
ACGATCCTGAGAAGGATGTA+TGG 0.540634 7.2:+14483992 MS.gene40388:CDS
GCACTTTGTGTTATGAGCAA+TGG 0.543239 7.2:+14484195 MS.gene40388:CDS
GGAGCTATTTGGCGCCAAGT+TGG 0.544319 7.2:-14484414 None:intergenic
GGGAAAATTGTTGTCGCTGG+GGG 0.548900 7.2:+14483928 MS.gene40388:CDS
GATGATTTATACATGATTGG+AGG 0.550401 7.2:+14484312 MS.gene40388:CDS
AAAACATCCATCGTGATCAC+CGG 0.551179 7.2:-14483803 None:intergenic
GGGCCCACTGTTGGATTATG+GGG 0.555055 7.2:-14483852 None:intergenic
TCATAAAGCAAGACAAAGAA+GGG 0.555728 7.2:+14484223 MS.gene40388:CDS
GGGTTTGCAATGATTGGACT+AGG 0.558189 7.2:+14484288 MS.gene40388:CDS
CTTTGAGGGAAGAACGGGAA+GGG 0.565020 7.2:-14483692 None:intergenic
CCTGGTCTTTGAGGGAAGAA+CGG 0.568560 7.2:-14483698 None:intergenic
GTGCGATGAAGATCAGGCAT+TGG 0.570847 7.2:-14484018 None:intergenic
CCATCGTGATCACCGGTCGA+AGG 0.573037 7.2:-14483796 None:intergenic
AGACAACCTCTAGCTTTGGA+TGG 0.574344 7.2:-14483522 None:intergenic
GTAATCCAGAGATCTCTAAG+AGG 0.575936 7.2:-14483670 None:intergenic
GCCAAATAGCTCCAATGACA+CGG 0.582259 7.2:+14484424 MS.gene40388:CDS
TTACCTCCATCCAAAGCTAG+AGG 0.588537 7.2:+14483516 MS.gene40388:CDS
GCGTCATTGGACCTGACAGA+TGG 0.590626 7.2:+14484334 MS.gene40388:CDS
GGAACAAGCATTGAAGCCCG+AGG 0.593474 7.2:-14483874 None:intergenic
GAACAAGCATTGAAGCCCGA+GGG 0.596251 7.2:-14483873 None:intergenic
TGTTCAGGAATAGTGATTGG+TGG 0.597908 7.2:+14484054 MS.gene40388:CDS
CAACCTCTAGCTTTGGATGG+AGG 0.602511 7.2:-14483519 None:intergenic
TGAGTGGCTTCAAGGTCCAA+TGG 0.603101 7.2:+14484158 MS.gene40388:CDS
AAGTTGTTTGTCATTGGCGG+TGG 0.603362 7.2:+14483757 MS.gene40388:CDS
CCTTCGACCGGTGATCACGA+TGG 0.605134 7.2:+14483796 MS.gene40388:CDS
TGGACCTGACAGATGGAACT+GGG 0.607636 7.2:+14484341 MS.gene40388:CDS
ACAGGAGGTTGCTTCATCTG+AGG 0.609268 7.2:+14483594 MS.gene40388:CDS
GGTAAAAGGGAACGCGTGCA+AGG 0.612187 7.2:-14483498 None:intergenic
GTCATATGACCAGACTTCGT+CGG 0.615421 7.2:-14483830 None:intergenic
AGAAATGTACGATCCTGAGA+AGG 0.617500 7.2:+14483984 MS.gene40388:CDS
ACCTTATTGCAACAGCATCA+GGG 0.622347 7.2:-14483474 None:intergenic
GGATCGTCGAGGAGTGTGAG+TGG 0.622938 7.2:+14484142 MS.gene40388:CDS
ATACGGCACCAAAGTGAGCA+AGG 0.624375 7.2:-14483723 None:intergenic
TGGGAAAATTGTTGTCGCTG+GGG 0.627830 7.2:+14483927 MS.gene40388:CDS
TGACCCCATAATCCAACAGT+GGG 0.628215 7.2:+14483849 MS.gene40388:CDS
GATCAAAAGCACAGACACAC+AGG 0.628483 7.2:-14483621 None:intergenic
GATGCTGTTGATCCTTCGAC+CGG 0.628985 7.2:+14483784 MS.gene40388:CDS
TAATCCAGAGATCTCTAAGA+GGG 0.633713 7.2:-14483669 None:intergenic
CATCAGTGTACAACCAACAA+TGG 0.634433 7.2:-14484457 None:intergenic
GCTCCAATGACACGGTGTCG+TGG 0.641084 7.2:+14484432 MS.gene40388:CDS
TTGGTAGTGAGAGACCAACT+TGG 0.641441 7.2:+14484400 MS.gene40388:CDS
AACAAGCATTGAAGCCCGAG+GGG 0.644286 7.2:-14483872 None:intergenic
GACAAACAACTTTCCAGCTG+CGG 0.655991 7.2:-14483746 None:intergenic
AAAGATGCATGTACTGCACA+AGG 0.662171 7.2:+14484077 MS.gene40388:CDS
ATGACCCCATAATCCAACAG+TGG 0.692852 7.2:+14483848 MS.gene40388:CDS
CAGCATGCAAACATAGAACG+GGG 0.697725 7.2:-14483895 None:intergenic
TCTTTGAGGGAAGAACGGGA+AGG 0.697994 7.2:-14483693 None:intergenic
AGGGGCTAGATGGATCGTCG+AGG 0.760201 7.2:+14484131 MS.gene40388:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAGATTTTAAAAAGAGAAT+TGG + chr7.2:14484267-14484286 MS.gene40388:CDS 20.0%
!!! CAGATTTTAAAAAGAGAATT+GGG + chr7.2:14484268-14484287 MS.gene40388:CDS 20.0%
AGAACATCAACATCTGATAA+TGG - chr7.2:14484375-14484394 None:intergenic 30.0%
AGAACTATCAAAAATTCGAC+AGG + chr7.2:14483576-14483595 MS.gene40388:CDS 30.0%
ATCATAAAGCAAGACAAAGA+AGG + chr7.2:14484222-14484241 MS.gene40388:CDS 30.0%
GATGATTTATACATGATTGG+AGG + chr7.2:14484312-14484331 MS.gene40388:CDS 30.0%
GGTGATGATTTATACATGAT+TGG + chr7.2:14484309-14484328 MS.gene40388:CDS 30.0%
TCATAAAGCAAGACAAAGAA+GGG + chr7.2:14484223-14484242 MS.gene40388:CDS 30.0%
TTATCAGATGTTGATGTTCT+CGG + chr7.2:14484375-14484394 MS.gene40388:CDS 30.0%
!! GTCGAATTTTTGATAGTTCT+GGG - chr7.2:14483576-14483595 None:intergenic 30.0%
!! TGTCGAATTTTTGATAGTTC+TGG - chr7.2:14483577-14483596 None:intergenic 30.0%
ACTATCAAAAATTCGACAGG+AGG + chr7.2:14483579-14483598 MS.gene40388:CDS 35.0%
AGAATTGGGTTTGCAATGAT+TGG + chr7.2:14484282-14484301 MS.gene40388:CDS 35.0%
! TAATCCAGAGATCTCTAAGA+GGG - chr7.2:14483672-14483691 None:intergenic 35.0%
!! TTGCATGCTGTGTTTTGAAT+GGG + chr7.2:14483908-14483927 MS.gene40388:CDS 35.0%
!! TTTGCATGCTGTGTTTTGAA+TGG + chr7.2:14483907-14483926 MS.gene40388:CDS 35.0%
!!! TGCAAGTTTTAGACAATGCA+GGG + chr7.2:14484112-14484131 MS.gene40388:CDS 35.0%
AAAACATCCATCGTGATCAC+CGG - chr7.2:14483806-14483825 None:intergenic 40.0%
AAAGATGCATGTACTGCACA+AGG + chr7.2:14484077-14484096 MS.gene40388:CDS 40.0%
AATGGGAAAATTGTTGTCGC+TGG + chr7.2:14483925-14483944 MS.gene40388:CDS 40.0%
ACAGCATGCAAACATAGAAC+GGG - chr7.2:14483899-14483918 None:intergenic 40.0%
ACCAATCACTATTCCTGAAC+AGG - chr7.2:14484055-14484074 None:intergenic 40.0%
ACCTTATTGCAACAGCATCA+GGG - chr7.2:14483477-14483496 None:intergenic 40.0%
ACTCAAAATTCAGCCTGTTC+AGG + chr7.2:14484039-14484058 MS.gene40388:CDS 40.0%
AGAAATGTACGATCCTGAGA+AGG + chr7.2:14483984-14484003 MS.gene40388:CDS 40.0%
ATGGGAAAATTGTTGTCGCT+GGG + chr7.2:14483926-14483945 MS.gene40388:CDS 40.0%
CACAGCATGCAAACATAGAA+CGG - chr7.2:14483900-14483919 None:intergenic 40.0%
CATCAGTGTACAACCAACAA+TGG - chr7.2:14484460-14484479 None:intergenic 40.0%
GCACTTTGTGTTATGAGCAA+TGG + chr7.2:14484195-14484214 MS.gene40388:CDS 40.0%
GCTGGAAAGTTGTTTGTCAT+TGG + chr7.2:14483751-14483770 MS.gene40388:CDS 40.0%
GGAAAGTTGTTTGTCATTGG+CGG + chr7.2:14483754-14483773 MS.gene40388:CDS 40.0%
GTAATCCAGAGATCTCTAAG+AGG - chr7.2:14483673-14483692 None:intergenic 40.0%
TGTTCAGGAATAGTGATTGG+TGG + chr7.2:14484054-14484073 MS.gene40388:CDS 40.0%
! CTTTTGATCCAGAGAACGTA+TGG + chr7.2:14483635-14483654 MS.gene40388:CDS 40.0%
!! AGCTTTGGATGGAGGTAAAA+GGG - chr7.2:14483514-14483533 None:intergenic 40.0%
!! TAGCTTTGGATGGAGGTAAA+AGG - chr7.2:14483515-14483534 None:intergenic 40.0%
!! TGATAGTTCTGGGCTATGAA+TGG - chr7.2:14483566-14483585 None:intergenic 40.0%
!! TTTTGAGTGCGATGAAGATC+AGG - chr7.2:14484027-14484046 None:intergenic 40.0%
!!! GCAAGTTTTAGACAATGCAG+GGG + chr7.2:14484113-14484132 MS.gene40388:CDS 40.0%
!!! GTGCAAGTTTTAGACAATGC+AGG + chr7.2:14484111-14484130 MS.gene40388:CDS 40.0%
AAGTTGTTTGTCATTGGCGG+TGG + chr7.2:14483757-14483776 MS.gene40388:CDS 45.0%
ACGATCCTGAGAAGGATGTA+TGG + chr7.2:14483992-14484011 MS.gene40388:CDS 45.0%
ATGACCCCATAATCCAACAG+TGG + chr7.2:14483848-14483867 MS.gene40388:CDS 45.0%
ATGACCCTCTTAGAGATCTC+TGG + chr7.2:14483665-14483684 MS.gene40388:CDS 45.0%
CACCTTATTGCAACAGCATC+AGG - chr7.2:14483478-14483497 None:intergenic 45.0%
CAGCATGCAAACATAGAACG+GGG - chr7.2:14483898-14483917 None:intergenic 45.0%
GACAAACAACTTTCCAGCTG+CGG - chr7.2:14483749-14483768 None:intergenic 45.0%
GATGTTGATGTTCTCGGACT+TGG + chr7.2:14484381-14484400 MS.gene40388:CDS 45.0%
GCCAAATAGCTCCAATGACA+CGG + chr7.2:14484424-14484443 MS.gene40388:CDS 45.0%
GCCTGTTCAGGAATAGTGAT+TGG + chr7.2:14484051-14484070 MS.gene40388:CDS 45.0%
GGGTTTGCAATGATTGGACT+AGG + chr7.2:14484288-14484307 MS.gene40388:CDS 45.0%
GTCATATGACCAGACTTCGT+CGG - chr7.2:14483833-14483852 None:intergenic 45.0%
TACAGTTGCCATACGTTCTC+TGG - chr7.2:14483646-14483665 None:intergenic 45.0%
TAGAGGTTGTCTCTCGTTCT+TGG + chr7.2:14483533-14483552 MS.gene40388:CDS 45.0%
TCCCTGATGCTGTTGCAATA+AGG + chr7.2:14483473-14483492 MS.gene40388:CDS 45.0%
TGACCCCATAATCCAACAGT+GGG + chr7.2:14483849-14483868 MS.gene40388:CDS 45.0%
TGGGAAAATTGTTGTCGCTG+GGG + chr7.2:14483927-14483946 MS.gene40388:CDS 45.0%
TTACCTCCATCCAAAGCTAG+AGG + chr7.2:14483516-14483535 MS.gene40388:CDS 45.0%
! ACCGTGTCATTGGAGCTATT+TGG - chr7.2:14484428-14484447 None:intergenic 45.0%
! GATCAAAAGCACAGACACAC+AGG - chr7.2:14483624-14483643 None:intergenic 45.0%
!! AGACAACCTCTAGCTTTGGA+TGG - chr7.2:14483525-14483544 None:intergenic 45.0%
!! TACATGATTGGAGGCGTCAT+TGG + chr7.2:14484321-14484340 MS.gene40388:CDS 45.0%
!! TTGGTAGTGAGAGACCAACT+TGG + chr7.2:14484400-14484419 MS.gene40388:CDS 45.0%
ACAGGAGGTTGCTTCATCTG+AGG + chr7.2:14483594-14483613 MS.gene40388:CDS 50.0%
AGGTCCAATGGCAGTAGTTC+AGG + chr7.2:14484170-14484189 MS.gene40388:CDS 50.0%
ATACGGCACCAAAGTGAGCA+AGG - chr7.2:14483726-14483745 None:intergenic 50.0%
ATGTCCCAGTTCCATCTGTC+AGG - chr7.2:14484348-14484367 None:intergenic 50.0%
CAACTTTCCAGCTGCGGATA+CGG - chr7.2:14483743-14483762 None:intergenic 50.0%
GATGCTGTTGATCCTTCGAC+CGG + chr7.2:14483784-14483803 MS.gene40388:CDS 50.0%
GCATCCTGAACTACTGCCAT+TGG - chr7.2:14484177-14484196 None:intergenic 50.0%
GGAGTCCATACATCCTTCTC+AGG - chr7.2:14484000-14484019 None:intergenic 50.0%
GGGAAAATTGTTGTCGCTGG+GGG + chr7.2:14483928-14483947 MS.gene40388:CDS 50.0%
GTGCGATGAAGATCAGGCAT+TGG - chr7.2:14484021-14484040 None:intergenic 50.0%
TAGACAATGCAGGGGCTAGA+TGG + chr7.2:14484121-14484140 MS.gene40388:CDS 50.0%
TGAGTGGCTTCAAGGTCCAA+TGG + chr7.2:14484158-14484177 MS.gene40388:CDS 50.0%
TGGACCTGACAGATGGAACT+GGG + chr7.2:14484341-14484360 MS.gene40388:CDS 50.0%
TTGGACCTGACAGATGGAAC+TGG + chr7.2:14484340-14484359 MS.gene40388:CDS 50.0%
! CCTGGTCTTTGAGGGAAGAA+CGG - chr7.2:14483701-14483720 None:intergenic 50.0%
! CGAGAGACAACCTCTAGCTT+TGG - chr7.2:14483529-14483548 None:intergenic 50.0%
! CTGGTCTTTGAGGGAAGAAC+GGG - chr7.2:14483700-14483719 None:intergenic 50.0%
! CTTTGAGGGAAGAACGGGAA+GGG - chr7.2:14483695-14483714 None:intergenic 50.0%
! GTTTTGCAACCGACGAAGTC+TGG + chr7.2:14483821-14483840 MS.gene40388:CDS 50.0%
! TCTTTGAGGGAAGAACGGGA+AGG - chr7.2:14483696-14483715 None:intergenic 50.0%
!! AACAAGCATTGAAGCCCGAG+GGG - chr7.2:14483875-14483894 None:intergenic 50.0%
!! CAACCTCTAGCTTTGGATGG+AGG - chr7.2:14483522-14483541 None:intergenic 50.0%
!! GAACAAGCATTGAAGCCCGA+GGG - chr7.2:14483876-14483895 None:intergenic 50.0%
ACCAGGCACCTTGCTCACTT+TGG + chr7.2:14483715-14483734 MS.gene40388:CDS 55.0%
AGGGGCCCACTGTTGGATTA+TGG - chr7.2:14483857-14483876 None:intergenic 55.0%
CCGTTCTTCCCTCAAAGACC+AGG + chr7.2:14483698-14483717 MS.gene40388:CDS 55.0%
GCGTCATTGGACCTGACAGA+TGG + chr7.2:14484334-14484353 MS.gene40388:CDS 55.0%
GGAGCTATTTGGCGCCAAGT+TGG - chr7.2:14484417-14484436 None:intergenic 55.0%
GGGCCCACTGTTGGATTATG+GGG - chr7.2:14483855-14483874 None:intergenic 55.0%
GGGGCCCACTGTTGGATTAT+GGG - chr7.2:14483856-14483875 None:intergenic 55.0%
GGTAAAAGGGAACGCGTGCA+AGG - chr7.2:14483501-14483520 None:intergenic 55.0%
GTACCACGACACCGTGTCAT+TGG - chr7.2:14484438-14484457 None:intergenic 55.0%
TAATCCAACAGTGGGCCCCT+CGG + chr7.2:14483857-14483876 MS.gene40388:CDS 55.0%
! ACCAAAGTGAGCAAGGTGCC+TGG - chr7.2:14483719-14483738 None:intergenic 55.0%
! AGCAAGGTGCCTGGTCTTTG+AGG - chr7.2:14483710-14483729 None:intergenic 55.0%
! GAGGAGTGTGAGTGGCTTCA+AGG + chr7.2:14484150-14484169 MS.gene40388:CDS 55.0%
! GCAAGGTGCCTGGTCTTTGA+GGG - chr7.2:14483709-14483728 None:intergenic 55.0%
!! CGGTGTCGTGGTACCATTGT+TGG + chr7.2:14484444-14484463 MS.gene40388:CDS 55.0%
!! GGAACAAGCATTGAAGCCCG+AGG - chr7.2:14483877-14483896 None:intergenic 55.0%
AATCCAACAGTGGGCCCCTC+GGG + chr7.2:14483858-14483877 MS.gene40388:CDS 60.0%
AGGGGCTAGATGGATCGTCG+AGG + chr7.2:14484131-14484150 MS.gene40388:CDS 60.0%
CCATCGTGATCACCGGTCGA+AGG - chr7.2:14483799-14483818 None:intergenic 60.0%
CCTTCGACCGGTGATCACGA+TGG + chr7.2:14483796-14483815 MS.gene40388:CDS 60.0%
! GCTCCAATGACACGGTGTCG+TGG + chr7.2:14484432-14484451 MS.gene40388:CDS 60.0%
! GGATCGTCGAGGAGTGTGAG+TGG + chr7.2:14484142-14484161 MS.gene40388:CDS 60.0%
!! TTTGGTGCCGTATCCGCAGC+TGG + chr7.2:14483733-14483752 MS.gene40388:CDS 60.0%
AAGCCCGAGGGGCCCACTGT+TGG - chr7.2:14483864-14483883 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 14483451 14484488 14483451 ID=MS.gene40388
chr7.2 mRNA 14483451 14484488 14483451 ID=MS.gene40388.t1;Parent=MS.gene40388
chr7.2 exon 14483451 14484488 14483451 ID=MS.gene40388.t1.exon1;Parent=MS.gene40388.t1
chr7.2 CDS 14483451 14484488 14483451 ID=cds.MS.gene40388.t1;Parent=MS.gene40388.t1
Gene Sequence

>MS.gene40388

ATGTCTGAACTGATTGAAGGACTCCCTGATGCTGTTGCAATAAGGTGCCTTGCACGCGTTCCCTTTTACCTCCATCCAAAGCTAGAGGTTGTCTCTCGTTCTTGGCAAGCAGCCATTCATAGCCCAGAACTATCAAAAATTCGACAGGAGGTTGCTTCATCTGAGGATCTCCTGTGTGTCTGTGCTTTTGATCCAGAGAACGTATGGCAACTGTATGACCCTCTTAGAGATCTCTGGATTACCCTTCCCGTTCTTCCCTCAAAGACCAGGCACCTTGCTCACTTTGGTGCCGTATCCGCAGCTGGAAAGTTGTTTGTCATTGGCGGTGGAAGTGATGCTGTTGATCCTTCGACCGGTGATCACGATGGATGTTTTGCAACCGACGAAGTCTGGTCATATGACCCCATAATCCAACAGTGGGCCCCTCGGGCTTCAATGCTTGTTCCCCGTTCTATGTTTGCATGCTGTGTTTTGAATGGGAAAATTGTTGTCGCTGGGGGCTTCACTAGCTGTAGAAAAACAATCTCTCAAGCAGAAATGTACGATCCTGAGAAGGATGTATGGACTCCAATGCCTGATCTTCATCGCACTCAAAATTCAGCCTGTTCAGGAATAGTGATTGGTGGAAAGATGCATGTACTGCACAAGGATATGTCAACAGTGCAAGTTTTAGACAATGCAGGGGCTAGATGGATCGTCGAGGAGTGTGAGTGGCTTCAAGGTCCAATGGCAGTAGTTCAGGATGCACTTTGTGTTATGAGCAATGGATCTATCATAAAGCAAGACAAAGAAGGGAGAAAGATTGTAAGTTCAGCAACAGATTTTAAAAAGAGAATTGGGTTTGCAATGATTGGACTAGGTGATGATTTATACATGATTGGAGGCGTCATTGGACCTGACAGATGGAACTGGGACATTAAGCCATTATCAGATGTTGATGTTCTCGGACTTGGTAGTGAGAGACCAACTTGGCGCCAAATAGCTCCAATGACACGGTGTCGTGGTACCATTGTTGGTTGTACACTGATGAGAATTTAA
Protein sequence

>MS.gene40388.t1

MSELIEGLPDAVAIRCLARVPFYLHPKLEVVSRSWQAAIHSPELSKIRQEVASSEDLLCVCAFDPENVWQLYDPLRDLWITLPVLPSKTRHLAHFGAVSAAGKLFVIGGGSDAVDPSTGDHDGCFATDEVWSYDPIIQQWAPRASMLVPRSMFACCVLNGKIVVAGGFTSCRKTISQAEMYDPEKDVWTPMPDLHRTQNSACSGIVIGGKMHVLHKDMSTVQVLDNAGARWIVEECEWLQGPMAVVQDALCVMSNGSIIKQDKEGRKIVSSATDFKKRIGFAMIGLGDDLYMIGGVIGPDRWNWDIKPLSDVDVLGLGSERPTWRQIAPMTRCRGTIVGCTLMRI