Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40402.t1 | XP_013449740.1 | 91.9 | 284 | 21 | 2 | 1 | 283 | 1 | 283 | 7.90E-132 | 479.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40402.t1 | Q9M1X2 | 59.9 | 279 | 107 | 3 | 1 | 279 | 1 | 274 | 7.1e-73 | 275.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40402.t1 | A0A072U3N8 | 91.9 | 284 | 21 | 2 | 1 | 283 | 1 | 283 | 5.7e-132 | 479.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054927 | MS.gene40402 | 0.812342 | 4.45E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40402.t1 | MTR_7g094980 | 92.657 | 286 | 15 | 3 | 1 | 283 | 1 | 283 | 0.0 | 503 |
| MS.gene40402.t1 | MTR_1g015700 | 36.652 | 221 | 126 | 2 | 74 | 283 | 185 | 402 | 2.76e-36 | 134 |
| MS.gene40402.t1 | MTR_1g015700 | 36.667 | 120 | 62 | 2 | 74 | 182 | 185 | 301 | 9.99e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40402.t1 | AT3G63170 | 55.197 | 279 | 120 | 3 | 1 | 279 | 1 | 274 | 9.69e-101 | 296 |
| MS.gene40402.t1 | AT2G26310 | 37.245 | 196 | 117 | 1 | 84 | 273 | 192 | 387 | 1.58e-33 | 126 |
| MS.gene40402.t1 | AT2G26310 | 37.245 | 196 | 117 | 1 | 84 | 273 | 192 | 387 | 1.58e-33 | 126 |
| MS.gene40402.t1 | AT2G26310 | 36.571 | 175 | 105 | 1 | 84 | 252 | 192 | 366 | 7.00e-26 | 105 |
| MS.gene40402.t1 | AT2G26310 | 33.163 | 196 | 100 | 2 | 84 | 273 | 192 | 362 | 9.59e-25 | 102 |
| MS.gene40402.t1 | AT2G26310 | 36.076 | 158 | 94 | 2 | 84 | 234 | 192 | 349 | 5.20e-21 | 91.7 |
Find 76 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGGGGATTGAGGTGGTTT+TGG | 0.125570 | 7.2:-14666204 | None:intergenic |
| GTTAAGAAGGAAAAGAATTT+TGG | 0.153628 | 7.2:+14666485 | MS.gene40402:CDS |
| GGCGGCAGCAGCGGCGAATT+TGG | 0.249950 | 7.2:-14666235 | None:intergenic |
| AGATGTCTGTCTGAGAAATA+TGG | 0.266325 | 7.2:+14666799 | MS.gene40402:CDS |
| TCTCAGAAACTCTGTGGAAT+TGG | 0.270486 | 7.2:+14666462 | MS.gene40402:CDS |
| ACAACTCCTTGCCTCCTCTA+TGG | 0.281256 | 7.2:+14666358 | MS.gene40402:CDS |
| AACATTGATGTATATGCTTT+TGG | 0.326039 | 7.2:+14666516 | MS.gene40402:CDS |
| GCTGCTGCCGCCGCCGCTGC+TGG | 0.339534 | 7.2:+14666246 | MS.gene40402:CDS |
| AGCAGCGGCGGCGGCAGCAG+CGG | 0.367959 | 7.2:-14666244 | None:intergenic |
| TCTTTAGCTTGTTTATCAAA+TGG | 0.380206 | 7.2:-14668635 | None:intergenic |
| AGGAGGCAAGGAGTTGTTGT+TGG | 0.380814 | 7.2:-14666352 | None:intergenic |
| CTCCTTGTTTCCCTTCAATT+CGG | 0.387216 | 7.2:-14666836 | None:intergenic |
| CCTCGCCAACGTATAAATCT+AGG | 0.389464 | 7.2:-14668610 | None:intergenic |
| ATAATAAAGAATTGCTTCAT+AGG | 0.390871 | 7.2:+14666998 | MS.gene40402:CDS |
| CTCAGAAACTCTGTGGAATT+GGG | 0.392277 | 7.2:+14666463 | MS.gene40402:CDS |
| CAACTCCTTGCCTCCTCTAT+GGG | 0.401706 | 7.2:+14666359 | MS.gene40402:CDS |
| TCTATGGGGTTCGCTCAGTT+TGG | 0.414133 | 7.2:+14666374 | MS.gene40402:CDS |
| GGTGGCACCAGCAGCGGCGG+CGG | 0.431224 | 7.2:-14666253 | None:intergenic |
| GGAGTTTAATGAGGATCTAC+TGG | 0.431474 | 7.2:+14666855 | MS.gene40402:CDS |
| ACCTACACAGGAGTTTACTT+TGG | 0.433749 | 7.2:-14668583 | None:intergenic |
| GAGAAAGGGCGTGGGGATTG+AGG | 0.441816 | 7.2:-14666213 | None:intergenic |
| ATGATATACATTTAACAGTA+AGG | 0.442640 | 7.2:+14666881 | MS.gene40402:CDS |
| TGCAGTTGACGGACAGGAAG+TGG | 0.444813 | 7.2:+14668553 | MS.gene40402:intron |
| GCGAATTTGGAGAAAGGGCG+TGG | 0.455965 | 7.2:-14666222 | None:intergenic |
| CCGATTGTTGACTCGAGGAC+CGG | 0.457446 | 7.2:+14666411 | MS.gene40402:CDS |
| TGCGGCGGTGGCACCAGCAG+CGG | 0.466631 | 7.2:-14666259 | None:intergenic |
| AACAGAAGGGAACGAGGATC+CGG | 0.468367 | 7.2:-14666430 | None:intergenic |
| GCAGCGGCGAATTTGGAGAA+AGG | 0.485576 | 7.2:-14666228 | None:intergenic |
| CCGGTCCTCGAGTCAACAAT+CGG | 0.486482 | 7.2:-14666411 | None:intergenic |
| AAAGAGACGGTGGCGATCAT+CGG | 0.490260 | 7.2:-14666298 | None:intergenic |
| GGAAGTGAAGAAAGAATTCA+AGG | 0.491421 | 7.2:-14666331 | None:intergenic |
| GATGTCTGTCTGAGAAATAT+GGG | 0.494327 | 7.2:+14666800 | MS.gene40402:CDS |
| AACTTTGGAGGTAAGAAGCC+AGG | 0.495322 | 7.2:-14668673 | None:intergenic |
| TCTGTGGAATTGGGTTAAGA+AGG | 0.500714 | 7.2:+14666472 | MS.gene40402:CDS |
| CTTGTTTCCCTTCAATTCGG+AGG | 0.500783 | 7.2:-14666833 | None:intergenic |
| GGTTGTTGCAGTTGACGGAC+AGG | 0.501877 | 7.2:+14668547 | MS.gene40402:intron |
| TTTGGGTTAGAAAATGTGAA+AGG | 0.508855 | 7.2:-14666186 | None:intergenic |
| GACGGCGATGAATGCGGCGG+TGG | 0.511495 | 7.2:-14666271 | None:intergenic |
| CAGCGGCGAATTTGGAGAAA+GGG | 0.516843 | 7.2:-14666227 | None:intergenic |
| GGCGGTGGCACCAGCAGCGG+CGG | 0.516948 | 7.2:-14666256 | None:intergenic |
| TGAGAAGCTTCAAGAACAGA+AGG | 0.519226 | 7.2:-14666444 | None:intergenic |
| CGAATTTGGAGAAAGGGCGT+GGG | 0.521998 | 7.2:-14666221 | None:intergenic |
| AAAATGTGAAAGGGAAGCGT+AGG | 0.525237 | 7.2:-14666176 | None:intergenic |
| TTGTTTCCCTTCAATTCGGA+GGG | 0.543382 | 7.2:-14666832 | None:intergenic |
| AGTGCATTTGAAGAGTCTGT+TGG | 0.545083 | 7.2:+14666946 | MS.gene40402:CDS |
| CTCCGAATTGAAGGGAAACA+AGG | 0.565305 | 7.2:+14666834 | MS.gene40402:CDS |
| GTGGCGATCATCGGAGGAGA+CGG | 0.566663 | 7.2:-14666289 | None:intergenic |
| TTGGGTTAGAAAATGTGAAA+GGG | 0.569537 | 7.2:-14666185 | None:intergenic |
| AAAGGGCGTGGGGATTGAGG+TGG | 0.570402 | 7.2:-14666210 | None:intergenic |
| CGAACCCCATAGAGGAGGCA+AGG | 0.572793 | 7.2:-14666364 | None:intergenic |
| TCAATCCTAGATTTATACGT+TGG | 0.577790 | 7.2:+14668605 | MS.gene40402:CDS |
| ATTCATCTCACAAGAGAGAA+GGG | 0.583527 | 7.2:+14667477 | MS.gene40402:CDS |
| AATTCATCTCACAAGAGAGA+AGG | 0.588462 | 7.2:+14667476 | MS.gene40402:CDS |
| GGGAAACAAGGAGTTTAATG+AGG | 0.593911 | 7.2:+14666846 | MS.gene40402:CDS |
| AACTCCTTGCCTCCTCTATG+GGG | 0.598308 | 7.2:+14666360 | MS.gene40402:CDS |
| AAATGTGAAAGGGAAGCGTA+GGG | 0.598473 | 7.2:-14666175 | None:intergenic |
| AATCTAGGATTGACCTACAC+AGG | 0.602235 | 7.2:-14668595 | None:intergenic |
| GCAGTTGACGGACAGGAAGT+GGG | 0.604670 | 7.2:+14668554 | MS.gene40402:intron |
| TCGCTCAGTTTGGCTGACAG+TGG | 0.604675 | 7.2:+14666384 | MS.gene40402:CDS |
| GTGTTCCGATTGTTGACTCG+AGG | 0.609856 | 7.2:+14666406 | MS.gene40402:CDS |
| GAATTTGGAGAAAGGGCGTG+GGG | 0.610439 | 7.2:-14666220 | None:intergenic |
| GAGACGGTGGCGATCATCGG+AGG | 0.611190 | 7.2:-14666295 | None:intergenic |
| CCTAGATTTATACGTTGGCG+AGG | 0.617834 | 7.2:+14668610 | MS.gene40402:CDS |
| GGAGGAGACGGCGATGAATG+CGG | 0.618329 | 7.2:-14666277 | None:intergenic |
| ATGAAATCAAAATACCTCGT+GGG | 0.630447 | 7.2:+14667448 | MS.gene40402:CDS |
| TTCAAGAACAGAAGGGAACG+AGG | 0.644777 | 7.2:-14666436 | None:intergenic |
| AAACTGAGCGAACCCCATAG+AGG | 0.661589 | 7.2:-14666372 | None:intergenic |
| GATGAAATCAAAATACCTCG+TGG | 0.663911 | 7.2:+14667447 | MS.gene40402:CDS |
| TCCAAAGTAAACTCCTGTGT+AGG | 0.666013 | 7.2:+14668582 | MS.gene40402:CDS |
| GAGAAGCTTCAAGAACAGAA+GGG | 0.668073 | 7.2:-14666443 | None:intergenic |
| AGAAGAAATAGAGCTCAACC+TGG | 0.668098 | 7.2:+14668655 | MS.gene40402:CDS |
| GAAGCTTCTCAGAAACTCTG+TGG | 0.672841 | 7.2:+14666456 | MS.gene40402:CDS |
| CTGAGCGAACCCCATAGAGG+AGG | 0.675688 | 7.2:-14666369 | None:intergenic |
| GATTGAGCATTCGTTCTGTG+AGG | 0.683191 | 7.2:+14666923 | MS.gene40402:CDS |
| GGAGACGGCGATGAATGCGG+CGG | 0.700801 | 7.2:-14666274 | None:intergenic |
| AGATGAATTACAGACCCACG+AGG | 0.819642 | 7.2:-14667462 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAAAAAAAAAAAA+AGG | - | chr7.2:14667211-14667230 | None:intergenic | 0.0% |
| !! | ATATAAATGAAATATTATTG+TGG | - | chr7.2:14667811-14667830 | None:intergenic | 10.0% |
| !! | GTAAAATAATTAGATAAAAA+AGG | - | chr7.2:14666575-14666594 | None:intergenic | 10.0% |
| !! | TATAAATGAAATATTATTGT+GGG | - | chr7.2:14667810-14667829 | None:intergenic | 10.0% |
| !! | ATAGGTTCTTAAAAAAAAAA+AGG | - | chr7.2:14668130-14668149 | None:intergenic | 15.0% |
| !! | ATTAGATAAAAAAGGTAAAT+TGG | - | chr7.2:14666567-14666586 | None:intergenic | 15.0% |
| !! | TTCTTATAATGTTTCTTATT+TGG | + | chr7.2:14666724-14666743 | MS.gene40402:intron | 15.0% |
| !!! | TCTTATAATGTTTCTTATTT+GGG | + | chr7.2:14666725-14666744 | MS.gene40402:intron | 15.0% |
| !! | ATAATAAAGAATTGCTTCAT+AGG | + | chr7.2:14666998-14667017 | MS.gene40402:CDS | 20.0% |
| !! | ATGATATACATTTAACAGTA+AGG | + | chr7.2:14666881-14666900 | MS.gene40402:CDS | 20.0% |
| !! | ATTCTAGTAATGTTGAAATA+TGG | + | chr7.2:14668045-14668064 | MS.gene40402:intron | 20.0% |
| !! | TACAGTAAAAAAAAAAGTAG+TGG | - | chr7.2:14667984-14668003 | None:intergenic | 20.0% |
| !! | TTAAAAAAAAAAAGGAGGTA+AGG | - | chr7.2:14668122-14668141 | None:intergenic | 20.0% |
| !! | TTCTAGTAATGTTGAAATAT+GGG | + | chr7.2:14668046-14668065 | MS.gene40402:intron | 20.0% |
| !!! | AAAATTATGTTGTTTGTTGA+AGG | + | chr7.2:14666748-14666767 | MS.gene40402:intron | 20.0% |
| !!! | TTAAGAAGGAAAAGAATTTT+GGG | + | chr7.2:14666486-14666505 | MS.gene40402:CDS | 20.0% |
| ! | AAAATGGAAATGCAAATACA+GGG | - | chr7.2:14667536-14667555 | None:intergenic | 25.0% |
| ! | AAACCTGACAATTTGATTAT+TGG | + | chr7.2:14668003-14668022 | MS.gene40402:intron | 25.0% |
| ! | ACCCATTTCCTTAAAATAAT+GGG | - | chr7.2:14667838-14667857 | None:intergenic | 25.0% |
| ! | GGTTCTTAAAAAAAAAAAGG+AGG | - | chr7.2:14668127-14668146 | None:intergenic | 25.0% |
| ! | TATCCAATAATCAAATTGTC+AGG | - | chr7.2:14668009-14668028 | None:intergenic | 25.0% |
| !! | AACATTGATGTATATGCTTT+TGG | + | chr7.2:14666516-14666535 | MS.gene40402:CDS | 25.0% |
| !! | AATTCTGAAAGTTGAGAAAA+TGG | - | chr7.2:14667552-14667571 | None:intergenic | 25.0% |
| !! | CTTTGATGTTAATTTTGTCT+TGG | + | chr7.2:14668526-14668545 | MS.gene40402:intron | 25.0% |
| !! | GTTAAGAAGGAAAAGAATTT+TGG | + | chr7.2:14666485-14666504 | MS.gene40402:CDS | 25.0% |
| !!! | ACTTGAGTTATCTTTTTCAT+AGG | + | chr7.2:14667037-14667056 | MS.gene40402:intron | 25.0% |
| !!! | ATACTCGCTTTTTTTTTTTG+TGG | - | chr7.2:14668251-14668270 | None:intergenic | 25.0% |
| !!! | ATATCTTCCCCATTATTTTA+AGG | + | chr7.2:14667827-14667846 | MS.gene40402:intron | 25.0% |
| !!! | TCTTTAGCTTGTTTATCAAA+TGG | - | chr7.2:14668638-14668657 | None:intergenic | 25.0% |
| AACTAAAACACCTAATACTG+GGG | - | chr7.2:14668459-14668478 | None:intergenic | 30.0% | |
| AATTCAAGTCCTCTAATCAT+TGG | + | chr7.2:14667635-14667654 | MS.gene40402:intron | 30.0% | |
| AGCAGAAAAGATACAAACAA+AGG | - | chr7.2:14667240-14667259 | None:intergenic | 30.0% | |
| ATGAAATCAAAATACCTCGT+GGG | + | chr7.2:14667448-14667467 | MS.gene40402:CDS | 30.0% | |
| CAACTAAAACACCTAATACT+GGG | - | chr7.2:14668460-14668479 | None:intergenic | 30.0% | |
| CACCCATTTCCTTAAAATAA+TGG | - | chr7.2:14667839-14667858 | None:intergenic | 30.0% | |
| CCCATTTCCTTAAAATAATG+GGG | - | chr7.2:14667837-14667856 | None:intergenic | 30.0% | |
| CTTGTGTAATTGCTTATACT+CGG | + | chr7.2:14668335-14668354 | MS.gene40402:intron | 30.0% | |
| GAAAATGGAAATGCAAATAC+AGG | - | chr7.2:14667537-14667556 | None:intergenic | 30.0% | |
| GAAGAAAAAGATGCAAACAA+AGG | - | chr7.2:14667179-14667198 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr7.2:14668203-14668222 | MS.gene40402:intron | 30.0% | |
| TAAGTATCAAGTACCTTACA+CGG | + | chr7.2:14668292-14668311 | MS.gene40402:intron | 30.0% | |
| TCAATCCTAGATTTATACGT+TGG | + | chr7.2:14668605-14668624 | MS.gene40402:CDS | 30.0% | |
| TCAATGCTAAATCACAACAA+GGG | + | chr7.2:14668502-14668521 | MS.gene40402:intron | 30.0% | |
| ! | ACTTGGAATACAGTTTTCAA+TGG | - | chr7.2:14667316-14667335 | None:intergenic | 30.0% |
| ! | GGTAAGGTTTAAGTGTTATT+AGG | - | chr7.2:14668106-14668125 | None:intergenic | 30.0% |
| ! | GGTTTAAGTGTTATTAGGTT+CGG | - | chr7.2:14668101-14668120 | None:intergenic | 30.0% |
| ! | TAACTGATTGAATTTGCTTG+CGG | + | chr7.2:14666631-14666650 | MS.gene40402:intron | 30.0% |
| ! | TATTTTACCAAGATTCTGCA+TGG | + | chr7.2:14666587-14666606 | MS.gene40402:intron | 30.0% |
| ! | TGAATTTTTCACAGTCAACA+TGG | - | chr7.2:14666702-14666721 | None:intergenic | 30.0% |
| ! | TTGGGTTAGAAAATGTGAAA+GGG | - | chr7.2:14666188-14666207 | None:intergenic | 30.0% |
| ! | TTTGGGTTAGAAAATGTGAA+AGG | - | chr7.2:14666189-14666208 | None:intergenic | 30.0% |
| !! | TTCTGAAATCCAATGATTAG+AGG | - | chr7.2:14667647-14667666 | None:intergenic | 30.0% |
| !!! | CATTATTTTAAGGAAATGGG+TGG | + | chr7.2:14667837-14667856 | MS.gene40402:intron | 30.0% |
| !!! | CCCCATTATTTTAAGGAAAT+GGG | + | chr7.2:14667834-14667853 | MS.gene40402:intron | 30.0% |
| !!! | TCCCCATTATTTTAAGGAAA+TGG | + | chr7.2:14667833-14667852 | MS.gene40402:intron | 30.0% |
| !!! | TTAGGTGTTTTAGTTGCTTT+TGG | + | chr7.2:14668464-14668483 | MS.gene40402:intron | 30.0% |
| !!! | TTTTTTTTTTTGTGGTGGCT+GGG | - | chr7.2:14668243-14668262 | None:intergenic | 30.0% |
| AAAAAAGTAGTGGCAGATCA+TGG | - | chr7.2:14667974-14667993 | None:intergenic | 35.0% | |
| AATTCATCTCACAAGAGAGA+AGG | + | chr7.2:14667476-14667495 | MS.gene40402:CDS | 35.0% | |
| ACTAAAACACCTAATACTGG+GGG | - | chr7.2:14668458-14668477 | None:intergenic | 35.0% | |
| AGATGTCTGTCTGAGAAATA+TGG | + | chr7.2:14666799-14666818 | MS.gene40402:CDS | 35.0% | |
| ATTCATCTCACAAGAGAGAA+GGG | + | chr7.2:14667477-14667496 | MS.gene40402:CDS | 35.0% | |
| CACTCAGTTGGATTTACATA+TGG | - | chr7.2:14667370-14667389 | None:intergenic | 35.0% | |
| CATAATATATGCAAGGTCTG+GGG | + | chr7.2:14668210-14668229 | MS.gene40402:intron | 35.0% | |
| GAATTGCTTCATAGGTGAAA+TGG | + | chr7.2:14667006-14667025 | MS.gene40402:intron | 35.0% | |
| GATGAAATCAAAATACCTCG+TGG | + | chr7.2:14667447-14667466 | MS.gene40402:CDS | 35.0% | |
| GATGTCTGTCTGAGAAATAT+GGG | + | chr7.2:14666800-14666819 | MS.gene40402:CDS | 35.0% | |
| GCAACTAAAACACCTAATAC+TGG | - | chr7.2:14668461-14668480 | None:intergenic | 35.0% | |
| GCATAATATATGCAAGGTCT+GGG | + | chr7.2:14668209-14668228 | MS.gene40402:intron | 35.0% | |
| GGAAGTGAAGAAAGAATTCA+AGG | - | chr7.2:14666334-14666353 | None:intergenic | 35.0% | |
| GGTTAAACTTTCAACTCAGT+TGG | + | chr7.2:14668356-14668375 | MS.gene40402:intron | 35.0% | |
| GTCAATGCTAAATCACAACA+AGG | + | chr7.2:14668501-14668520 | MS.gene40402:intron | 35.0% | |
| TAAGATTCATGTAGCCAGTT+TGG | - | chr7.2:14667768-14667787 | None:intergenic | 35.0% | |
| TCGTGAGATGAATAAACACT+TGG | - | chr7.2:14667333-14667352 | None:intergenic | 35.0% | |
| TGATATACCACATTCCAAAC+TGG | + | chr7.2:14667751-14667770 | MS.gene40402:intron | 35.0% | |
| TGCATAATATATGCAAGGTC+TGG | + | chr7.2:14668208-14668227 | MS.gene40402:intron | 35.0% | |
| TGGTGATTTCAAATTCGAAC+TGG | + | chr7.2:14668376-14668395 | MS.gene40402:intron | 35.0% | |
| ! | AGGCATTTTGTAGAAAGAGA+CGG | - | chr7.2:14666314-14666333 | None:intergenic | 35.0% |
| ! | AGTATTGAGTCTAACCGAAA+GGG | + | chr7.2:14667721-14667740 | MS.gene40402:intron | 35.0% |
| ! | AGTTTGGAATGTGGTATATC+AGG | - | chr7.2:14667752-14667771 | None:intergenic | 35.0% |
| ! | GTTTGGAATGTGGTATATCA+GGG | - | chr7.2:14667751-14667770 | None:intergenic | 35.0% |
| ! | TAGTATTGAGTCTAACCGAA+AGG | + | chr7.2:14667720-14667739 | MS.gene40402:intron | 35.0% |
| ! | TATACTCGCTCTTTTAAGCA+GGG | - | chr7.2:14668155-14668174 | None:intergenic | 35.0% |
| ! | TTATACTCGCTCTTTTAAGC+AGG | - | chr7.2:14668156-14668175 | None:intergenic | 35.0% |
| ! | TTTGGAATGTGGTATATCAG+GGG | - | chr7.2:14667750-14667769 | None:intergenic | 35.0% |
| !!! | CTCGCTTTTTTTTTTTGTGG+TGG | - | chr7.2:14668248-14668267 | None:intergenic | 35.0% |
| !!! | CTTTTTTTTTTTGTGGTGGC+TGG | - | chr7.2:14668244-14668263 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTGTGGTGGCTG+GGG | - | chr7.2:14668242-14668261 | None:intergenic | 35.0% |
| AAACCTACATCAAAGCATGC+TGG | - | chr7.2:14667412-14667431 | None:intergenic | 40.0% | |
| AAGCCGATTGCAAAAATACG+GGG | + | chr7.2:14666969-14666988 | MS.gene40402:CDS | 40.0% | |
| AATCCTTCACAAATTGGCCA+TGG | - | chr7.2:14667926-14667945 | None:intergenic | 40.0% | |
| ACCTACACAGGAGTTTACTT+TGG | - | chr7.2:14668586-14668605 | None:intergenic | 40.0% | |
| AGAAGAAATAGAGCTCAACC+TGG | + | chr7.2:14668655-14668674 | MS.gene40402:CDS | 40.0% | |
| AGTGCATTTGAAGAGTCTGT+TGG | + | chr7.2:14666946-14666965 | MS.gene40402:CDS | 40.0% | |
| ATGGCCACCATATAATACCA+TGG | - | chr7.2:14667955-14667974 | None:intergenic | 40.0% | |
| CAACATGGAATTCACTCAGT+TGG | - | chr7.2:14667382-14667401 | None:intergenic | 40.0% | |
| CTACCAGTGTTGCCAAATAT+CGG | + | chr7.2:14667865-14667884 | MS.gene40402:intron | 40.0% | |
| CTCAGAAACTCTGTGGAATT+GGG | + | chr7.2:14666463-14666482 | MS.gene40402:CDS | 40.0% | |
| GAAGCCGATTGCAAAAATAC+GGG | + | chr7.2:14666968-14666987 | MS.gene40402:CDS | 40.0% | |
| GAGAAGCTTCAAGAACAGAA+GGG | - | chr7.2:14666446-14666465 | None:intergenic | 40.0% | |
| GGAAGCCGATTGCAAAAATA+CGG | + | chr7.2:14666967-14666986 | MS.gene40402:CDS | 40.0% | |
| GGAGTTTAATGAGGATCTAC+TGG | + | chr7.2:14666855-14666874 | MS.gene40402:CDS | 40.0% | |
| GGGAAACAAGGAGTTTAATG+AGG | + | chr7.2:14666846-14666865 | MS.gene40402:CDS | 40.0% | |
| TAACCAGCATGCTTTGATGT+AGG | + | chr7.2:14667406-14667425 | MS.gene40402:intron | 40.0% | |
| TCCAAAGTAAACTCCTGTGT+AGG | + | chr7.2:14668582-14668601 | MS.gene40402:CDS | 40.0% | |
| TCTCAGAAACTCTGTGGAAT+TGG | + | chr7.2:14666462-14666481 | MS.gene40402:CDS | 40.0% | |
| TCTGTGGAATTGGGTTAAGA+AGG | + | chr7.2:14666472-14666491 | MS.gene40402:CDS | 40.0% | |
| TGAGAAGCTTCAAGAACAGA+AGG | - | chr7.2:14666447-14666466 | None:intergenic | 40.0% | |
| TGGAAATGCAAATACAGGGA+AGG | - | chr7.2:14667532-14667551 | None:intergenic | 40.0% | |
| TTGTTTCCCTTCAATTCGGA+GGG | - | chr7.2:14666835-14666854 | None:intergenic | 40.0% | |
| ! | AAAATGTGAAAGGGAAGCGT+AGG | - | chr7.2:14666179-14666198 | None:intergenic | 40.0% |
| ! | AAATGTGAAAGGGAAGCGTA+GGG | - | chr7.2:14666178-14666197 | None:intergenic | 40.0% |
| ! | AATCTAGGATTGACCTACAC+AGG | - | chr7.2:14668598-14668617 | None:intergenic | 40.0% |
| ! | ATACTCGCTCTTTTAAGCAG+GGG | - | chr7.2:14668154-14668173 | None:intergenic | 40.0% |
| ! | ATTTTCTCCCTCCGAATTGA+AGG | + | chr7.2:14666825-14666844 | MS.gene40402:CDS | 40.0% |
| ! | CATGCTGGTTAACTACAACA+TGG | - | chr7.2:14667397-14667416 | None:intergenic | 40.0% |
| ! | CATTTTGTAGAAAGAGACGG+TGG | - | chr7.2:14666311-14666330 | None:intergenic | 40.0% |
| ! | CTCCTTGTTTCCCTTCAATT+CGG | - | chr7.2:14666839-14666858 | None:intergenic | 40.0% |
| ! | TTTTCTCCCTCCGAATTGAA+GGG | + | chr7.2:14666826-14666845 | MS.gene40402:CDS | 40.0% |
| !! | AACCCCCGTATTTTTGCAAT+CGG | - | chr7.2:14666975-14666994 | None:intergenic | 40.0% |
| !! | GGGGCTCTAAAAATTTGCAT+GGG | - | chr7.2:14668439-14668458 | None:intergenic | 40.0% |
| !!! | AGATTTTTTGACAGCAGCCA+TGG | + | chr7.2:14667906-14667925 | MS.gene40402:intron | 40.0% |
| !!! | TTTTTAGAGCCCCCAGTATT+AGG | + | chr7.2:14668446-14668465 | MS.gene40402:intron | 40.0% |
| AATTACACAAGAGAACCGCG+CGG | - | chr7.2:14668326-14668345 | None:intergenic | 45.0% | |
| AGATGAATTACAGACCCACG+AGG | - | chr7.2:14667465-14667484 | None:intergenic | 45.0% | |
| AGCCGATTGCAAAAATACGG+GGG | + | chr7.2:14666970-14666989 | MS.gene40402:CDS | 45.0% | |
| CCTAGATTTATACGTTGGCG+AGG | + | chr7.2:14668610-14668629 | MS.gene40402:CDS | 45.0% | |
| CCTCGCCAACGTATAAATCT+AGG | - | chr7.2:14668613-14668632 | None:intergenic | 45.0% | |
| CGCCACAATCCTTCACAAAT+TGG | - | chr7.2:14667932-14667951 | None:intergenic | 45.0% | |
| CTCCGAATTGAAGGGAAACA+AGG | + | chr7.2:14666834-14666853 | MS.gene40402:CDS | 45.0% | |
| CTTGTTTCCCTTCAATTCGG+AGG | - | chr7.2:14666836-14666855 | None:intergenic | 45.0% | |
| GAAGCTTCTCAGAAACTCTG+TGG | + | chr7.2:14666456-14666475 | MS.gene40402:CDS | 45.0% | |
| GATTGAGCATTCGTTCTGTG+AGG | + | chr7.2:14666923-14666942 | MS.gene40402:CDS | 45.0% | |
| GGCCAATTTGTGAAGGATTG+TGG | + | chr7.2:14667927-14667946 | MS.gene40402:intron | 45.0% | |
| GTCTTGGTTGTTGCAGTTGA+CGG | + | chr7.2:14668542-14668561 | MS.gene40402:intron | 45.0% | |
| TAGCCGATATTTGGCAACAC+TGG | - | chr7.2:14667871-14667890 | None:intergenic | 45.0% | |
| TATATCAGGGGACACCCTTT+CGG | - | chr7.2:14667738-14667757 | None:intergenic | 45.0% | |
| TGTGGCGCCATGGTATTATA+TGG | + | chr7.2:14667945-14667964 | MS.gene40402:intron | 45.0% | |
| TTCAAGAACAGAAGGGAACG+AGG | - | chr7.2:14666439-14666458 | None:intergenic | 45.0% | |
| TTGCTTGCCATGCAGAATCT+TGG | - | chr7.2:14666597-14666616 | None:intergenic | 45.0% | |
| ! | AACTTTGGAGGTAAGAAGCC+AGG | - | chr7.2:14668676-14668695 | None:intergenic | 45.0% |
| ! | CATGTAGCCAGTTTGGAATG+TGG | - | chr7.2:14667761-14667780 | None:intergenic | 45.0% |
| ! | GTGTTGCCAAATATCGGCTA+TGG | + | chr7.2:14667871-14667890 | MS.gene40402:intron | 45.0% |
| ! | TTGCCAAATATCGGCTATGG+CGG | + | chr7.2:14667874-14667893 | MS.gene40402:intron | 45.0% |
| !! | GCTCTTTTAAGCAGGGGTAT+AGG | - | chr7.2:14668148-14668167 | None:intergenic | 45.0% |
| !! | GGGGGCTCTAAAAATTTGCA+TGG | - | chr7.2:14668440-14668459 | None:intergenic | 45.0% |
| AAACTGAGCGAACCCCATAG+AGG | - | chr7.2:14666375-14666394 | None:intergenic | 50.0% | |
| AAAGAGACGGTGGCGATCAT+CGG | - | chr7.2:14666301-14666320 | None:intergenic | 50.0% | |
| AACAGAAGGGAACGAGGATC+CGG | - | chr7.2:14666433-14666452 | None:intergenic | 50.0% | |
| AACTCCTTGCCTCCTCTATG+GGG | + | chr7.2:14666360-14666379 | MS.gene40402:CDS | 50.0% | |
| ACAACTCCTTGCCTCCTCTA+TGG | + | chr7.2:14666358-14666377 | MS.gene40402:CDS | 50.0% | |
| AGGAGGCAAGGAGTTGTTGT+TGG | - | chr7.2:14666355-14666374 | None:intergenic | 50.0% | |
| CAACTCCTTGCCTCCTCTAT+GGG | + | chr7.2:14666359-14666378 | MS.gene40402:CDS | 50.0% | |
| CAGCCATGGCCAATTTGTGA+AGG | + | chr7.2:14667920-14667939 | MS.gene40402:intron | 50.0% | |
| CAGCGGCGAATTTGGAGAAA+GGG | - | chr7.2:14666230-14666249 | None:intergenic | 50.0% | |
| GGCGCCATGGTATTATATGG+TGG | + | chr7.2:14667948-14667967 | MS.gene40402:intron | 50.0% | |
| TCTATGGGGTTCGCTCAGTT+TGG | + | chr7.2:14666374-14666393 | MS.gene40402:CDS | 50.0% | |
| ! | CGAATTTGGAGAAAGGGCGT+GGG | - | chr7.2:14666224-14666243 | None:intergenic | 50.0% |
| ! | GAATTTGGAGAAAGGGCGTG+GGG | - | chr7.2:14666223-14666242 | None:intergenic | 50.0% |
| ! | GTGGGGATTGAGGTGGTTTT+GGG | - | chr7.2:14666206-14666225 | None:intergenic | 50.0% |
| !! | GTGTTCCGATTGTTGACTCG+AGG | + | chr7.2:14666406-14666425 | MS.gene40402:CDS | 50.0% |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr7.2:14668181-14668200 | None:intergenic | 55.0% | |
| CCGGTCCTCGAGTCAACAAT+CGG | - | chr7.2:14666414-14666433 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr7.2:14668178-14668197 | MS.gene40402:intron | 55.0% | |
| CGTGAGCTTAGCTCAGTTGG+TGG | + | chr7.2:14668181-14668200 | MS.gene40402:intron | 55.0% | |
| GCACCGCCATAGCCGATATT+TGG | - | chr7.2:14667880-14667899 | None:intergenic | 55.0% | |
| GCAGCGGCGAATTTGGAGAA+AGG | - | chr7.2:14666231-14666250 | None:intergenic | 55.0% | |
| GCGAATTTGGAGAAAGGGCG+TGG | - | chr7.2:14666225-14666244 | None:intergenic | 55.0% | |
| TACACGGTTATACCTCCGCG+CGG | + | chr7.2:14668308-14668327 | MS.gene40402:intron | 55.0% | |
| TCGCTCAGTTTGGCTGACAG+TGG | + | chr7.2:14666384-14666403 | MS.gene40402:CDS | 55.0% | |
| TGTGAAGGATTGTGGCGCCA+TGG | + | chr7.2:14667935-14667954 | MS.gene40402:intron | 55.0% | |
| ! | CGCGGAGGTATAACCGTGTA+AGG | - | chr7.2:14668308-14668327 | None:intergenic | 55.0% |
| ! | CGTGGGGATTGAGGTGGTTT+TGG | - | chr7.2:14666207-14666226 | None:intergenic | 55.0% |
| ! | GCAGTTGACGGACAGGAAGT+GGG | + | chr7.2:14668554-14668573 | MS.gene40402:intron | 55.0% |
| ! | GGTTGTTGCAGTTGACGGAC+AGG | + | chr7.2:14668547-14668566 | MS.gene40402:intron | 55.0% |
| ! | TGCAGTTGACGGACAGGAAG+TGG | + | chr7.2:14668553-14668572 | MS.gene40402:intron | 55.0% |
| !! | CCGATTGTTGACTCGAGGAC+CGG | + | chr7.2:14666411-14666430 | MS.gene40402:CDS | 55.0% |
| CGAACCCCATAGAGGAGGCA+AGG | - | chr7.2:14666367-14666386 | None:intergenic | 60.0% | |
| CTGAGCGAACCCCATAGAGG+AGG | - | chr7.2:14666372-14666391 | None:intergenic | 60.0% | |
| GGAGGAGACGGCGATGAATG+CGG | - | chr7.2:14666280-14666299 | None:intergenic | 60.0% | |
| GTGGCGATCATCGGAGGAGA+CGG | - | chr7.2:14666292-14666311 | None:intergenic | 60.0% | |
| TACACAAGAGAACCGCGCGG+AGG | - | chr7.2:14668323-14668342 | None:intergenic | 60.0% | |
| ! | AAAGGGCGTGGGGATTGAGG+TGG | - | chr7.2:14666213-14666232 | None:intergenic | 60.0% |
| ! | GAGAAAGGGCGTGGGGATTG+AGG | - | chr7.2:14666216-14666235 | None:intergenic | 60.0% |
| GAGACGGTGGCGATCATCGG+AGG | - | chr7.2:14666298-14666317 | None:intergenic | 65.0% | |
| GGAGACGGCGATGAATGCGG+CGG | - | chr7.2:14666277-14666296 | None:intergenic | 65.0% | |
| GACGGCGATGAATGCGGCGG+TGG | - | chr7.2:14666274-14666293 | None:intergenic | 70.0% | |
| GGCGGCAGCAGCGGCGAATT+TGG | - | chr7.2:14666238-14666257 | None:intergenic | 70.0% | |
| TGCGGCGGTGGCACCAGCAG+CGG | - | chr7.2:14666262-14666281 | None:intergenic | 75.0% | |
| ! | AGCAGCGGCGGCGGCAGCAG+CGG | - | chr7.2:14666247-14666266 | None:intergenic | 80.0% |
| ! | GGCGGTGGCACCAGCAGCGG+CGG | - | chr7.2:14666259-14666278 | None:intergenic | 80.0% |
| ! | GGTGGCACCAGCAGCGGCGG+CGG | - | chr7.2:14666256-14666275 | None:intergenic | 80.0% |
| ! | GCTGCTGCCGCCGCCGCTGC+TGG | + | chr7.2:14666246-14666265 | MS.gene40402:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 14666168 | 14668697 | 14666168 | ID=MS.gene40402 |
| chr7.2 | mRNA | 14666168 | 14668697 | 14666168 | ID=MS.gene40402.t1;Parent=MS.gene40402 |
| chr7.2 | exon | 14666168 | 14666537 | 14666168 | ID=MS.gene40402.t1.exon1;Parent=MS.gene40402.t1 |
| chr7.2 | CDS | 14666168 | 14666537 | 14666168 | ID=cds.MS.gene40402.t1;Parent=MS.gene40402.t1 |
| chr7.2 | exon | 14666770 | 14667019 | 14666770 | ID=MS.gene40402.t1.exon2;Parent=MS.gene40402.t1 |
| chr7.2 | CDS | 14666770 | 14667019 | 14666770 | ID=cds.MS.gene40402.t1;Parent=MS.gene40402.t1 |
| chr7.2 | exon | 14667428 | 14667519 | 14667428 | ID=MS.gene40402.t1.exon3;Parent=MS.gene40402.t1 |
| chr7.2 | CDS | 14667428 | 14667519 | 14667428 | ID=cds.MS.gene40402.t1;Parent=MS.gene40402.t1 |
| chr7.2 | exon | 14668558 | 14668697 | 14668558 | ID=MS.gene40402.t1.exon4;Parent=MS.gene40402.t1 |
| chr7.2 | CDS | 14668558 | 14668697 | 14668558 | ID=cds.MS.gene40402.t1;Parent=MS.gene40402.t1 |
| Gene Sequence |
| Protein sequence |
