Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40455.t1 | XP_003603555.1 | 98.9 | 474 | 5 | 0 | 1 | 474 | 1 | 474 | 1.00E-280 | 975.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40455.t1 | Q9SB75 | 79.1 | 479 | 95 | 3 | 1 | 474 | 1 | 479 | 1.7e-228 | 793.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40455.t1 | G7J2T7 | 98.9 | 474 | 5 | 0 | 1 | 474 | 1 | 474 | 7.3e-281 | 975.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052732 | MS.gene40455 | 0.834205 | 3.43E-56 | -1.69E-46 |
| MS.gene053144 | MS.gene40455 | 0.816962 | 4.22E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene40455 | 0.838916 | 2.16E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40455.t1 | MTR_3g109040 | 98.945 | 474 | 5 | 0 | 1 | 474 | 1 | 474 | 0.0 | 978 |
| MS.gene40455.t1 | MTR_3g109040 | 98.920 | 463 | 5 | 0 | 12 | 474 | 1 | 463 | 0.0 | 954 |
| MS.gene40455.t1 | MTR_4g006010 | 72.041 | 490 | 120 | 5 | 1 | 474 | 1 | 489 | 0.0 | 723 |
| MS.gene40455.t1 | MTR_3g103500 | 63.306 | 496 | 157 | 7 | 1 | 476 | 1 | 491 | 0.0 | 634 |
| MS.gene40455.t1 | MTR_3g103500 | 63.765 | 494 | 154 | 7 | 1 | 474 | 1 | 489 | 0.0 | 632 |
| MS.gene40455.t1 | MTR_6g007807 | 64.097 | 454 | 150 | 4 | 24 | 474 | 12 | 455 | 0.0 | 611 |
| MS.gene40455.t1 | MTR_8g012320 | 56.855 | 496 | 184 | 6 | 2 | 474 | 4 | 492 | 0.0 | 566 |
| MS.gene40455.t1 | MTR_1g061340 | 50.938 | 320 | 156 | 1 | 155 | 473 | 19 | 338 | 1.20e-108 | 332 |
| MS.gene40455.t1 | MTR_7g103590 | 49.846 | 325 | 160 | 2 | 151 | 473 | 24 | 347 | 3.73e-108 | 331 |
| MS.gene40455.t1 | MTR_7g101950 | 49.062 | 320 | 157 | 2 | 154 | 470 | 24 | 340 | 1.34e-107 | 330 |
| MS.gene40455.t1 | MTR_1g061280 | 50.467 | 321 | 156 | 2 | 155 | 473 | 19 | 338 | 7.79e-107 | 328 |
| MS.gene40455.t1 | MTR_1g061510 | 48.657 | 335 | 162 | 3 | 155 | 480 | 19 | 352 | 1.73e-106 | 327 |
| MS.gene40455.t1 | MTR_1g061270 | 50.156 | 321 | 157 | 2 | 155 | 473 | 19 | 338 | 6.58e-105 | 323 |
| MS.gene40455.t1 | MTR_1g492700 | 56.554 | 267 | 116 | 0 | 207 | 473 | 79 | 345 | 1.51e-104 | 322 |
| MS.gene40455.t1 | MTR_4g055520 | 47.164 | 335 | 167 | 3 | 155 | 480 | 28 | 361 | 1.10e-101 | 313 |
| MS.gene40455.t1 | MTR_4g055520 | 47.164 | 335 | 167 | 3 | 155 | 480 | 28 | 361 | 6.69e-101 | 313 |
| MS.gene40455.t1 | MTR_4g055520 | 52.174 | 253 | 114 | 1 | 235 | 480 | 29 | 281 | 6.24e-90 | 282 |
| MS.gene40455.t1 | MTR_4g074380 | 53.093 | 194 | 32 | 3 | 42 | 235 | 7 | 141 | 1.81e-50 | 170 |
| MS.gene40455.t1 | MTR_4g108050 | 77.966 | 59 | 13 | 0 | 42 | 100 | 7 | 65 | 7.11e-23 | 92.4 |
| MS.gene40455.t1 | MTR_4g116020 | 80.769 | 52 | 10 | 0 | 189 | 240 | 59 | 110 | 2.83e-20 | 86.7 |
| MS.gene40455.t1 | MTR_4g116020 | 85.106 | 47 | 7 | 0 | 189 | 235 | 34 | 80 | 3.18e-19 | 83.2 |
| MS.gene40455.t1 | MTR_4g116020 | 85.106 | 47 | 7 | 0 | 189 | 235 | 59 | 105 | 8.49e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40455.t1 | AT4G31590 | 78.914 | 479 | 96 | 3 | 1 | 474 | 1 | 479 | 0.0 | 799 |
| MS.gene40455.t1 | AT2G24630 | 75.052 | 481 | 115 | 3 | 1 | 476 | 1 | 481 | 0.0 | 767 |
| MS.gene40455.t1 | AT2G24630 | 75.052 | 481 | 115 | 3 | 1 | 476 | 1 | 481 | 0.0 | 767 |
| MS.gene40455.t1 | AT3G28180 | 65.727 | 461 | 136 | 6 | 21 | 474 | 6 | 451 | 0.0 | 628 |
| MS.gene40455.t1 | AT4G07960 | 61.523 | 499 | 165 | 7 | 1 | 476 | 1 | 495 | 0.0 | 627 |
| MS.gene40455.t1 | AT4G07960 | 61.523 | 499 | 165 | 7 | 1 | 476 | 1 | 495 | 0.0 | 627 |
| MS.gene40455.t1 | AT3G07330 | 58.599 | 471 | 188 | 3 | 6 | 474 | 8 | 473 | 0.0 | 561 |
| MS.gene40455.t1 | AT3G07330 | 58.599 | 471 | 188 | 3 | 6 | 474 | 8 | 473 | 0.0 | 561 |
| MS.gene40455.t1 | AT2G35650 | 50.779 | 321 | 155 | 2 | 155 | 473 | 51 | 370 | 3.92e-107 | 329 |
| MS.gene40455.t1 | AT5G03760 | 52.443 | 307 | 143 | 2 | 159 | 463 | 33 | 338 | 4.41e-107 | 328 |
| MS.gene40455.t1 | AT2G35650 | 57.252 | 262 | 112 | 0 | 212 | 473 | 37 | 298 | 7.82e-105 | 321 |
| MS.gene40455.t1 | AT2G35650 | 57.252 | 262 | 112 | 0 | 212 | 473 | 37 | 298 | 7.82e-105 | 321 |
| MS.gene40455.t1 | AT1G24070 | 48.276 | 319 | 162 | 2 | 158 | 474 | 57 | 374 | 5.30e-104 | 317 |
| MS.gene40455.t1 | AT4G13410 | 47.720 | 329 | 159 | 2 | 155 | 476 | 43 | 365 | 1.32e-103 | 315 |
| MS.gene40455.t1 | AT1G23480 | 47.507 | 341 | 169 | 3 | 149 | 480 | 46 | 385 | 2.16e-103 | 320 |
| MS.gene40455.t1 | AT1G23480 | 47.507 | 341 | 169 | 3 | 149 | 480 | 46 | 385 | 2.16e-103 | 320 |
| MS.gene40455.t1 | AT5G16190 | 47.904 | 334 | 166 | 2 | 155 | 480 | 6 | 339 | 2.39e-103 | 317 |
| MS.gene40455.t1 | AT5G22740 | 47.463 | 335 | 166 | 3 | 155 | 480 | 29 | 362 | 4.66e-103 | 318 |
| MS.gene40455.t1 | AT5G16190 | 47.904 | 334 | 166 | 2 | 155 | 480 | 6 | 339 | 7.72e-103 | 317 |
| MS.gene40455.t1 | AT5G16190 | 47.904 | 334 | 166 | 2 | 155 | 480 | 6 | 339 | 2.33e-102 | 317 |
| MS.gene40455.t1 | AT1G24070 | 46.988 | 332 | 166 | 3 | 158 | 480 | 57 | 387 | 4.79e-102 | 316 |
| MS.gene40455.t1 | AT1G23480 | 53.737 | 281 | 123 | 1 | 207 | 480 | 33 | 313 | 9.05e-101 | 311 |
| MS.gene40455.t1 | AT4G13410 | 48.734 | 316 | 149 | 2 | 155 | 463 | 43 | 352 | 3.66e-100 | 311 |
| MS.gene40455.t1 | AT5G16190 | 52.899 | 276 | 123 | 1 | 212 | 480 | 3 | 278 | 1.22e-99 | 306 |
| MS.gene40455.t1 | AT3G56000 | 47.463 | 335 | 163 | 5 | 159 | 480 | 26 | 360 | 1.98e-96 | 301 |
| MS.gene40455.t1 | AT4G16590 | 43.711 | 318 | 144 | 4 | 147 | 463 | 49 | 332 | 3.71e-79 | 256 |
| MS.gene40455.t1 | AT2G35650 | 55.882 | 204 | 90 | 0 | 270 | 473 | 9 | 212 | 2.34e-77 | 248 |
| MS.gene40455.t1 | AT1G23480 | 54.091 | 220 | 94 | 1 | 268 | 480 | 21 | 240 | 2.55e-75 | 243 |
| MS.gene40455.t1 | AT4G13410 | 56.316 | 190 | 83 | 0 | 274 | 463 | 2 | 191 | 2.72e-71 | 231 |
Find 0 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTTTGTTAATTTCTT+TGG | + | 24207:7774-7793 | MS.gene40455:CDS | 15.0% |
| !! | CTTAATTGTGTTTAAATTTC+AGG | + | 24207:9343-9362 | MS.gene40455:intron | 20.0% |
| ! | AAATTTAAGAGAGTTCTTCA+GGG | - | 24207:9323-9342 | None:intergenic | 25.0% |
| ! | ACTATTACATTGAAACTTAC+TGG | - | 24207:8223-8242 | None:intergenic | 25.0% |
| ! | AGATTGCAGAAAATTCTTAA+GGG | - | 24207:8352-8371 | None:intergenic | 25.0% |
| ! | TATTATGCACTATGAAAGAA+AGG | - | 24207:9247-9266 | None:intergenic | 25.0% |
| ! | TCAATGACATTGACAAAATA+TGG | + | 24207:8445-8464 | MS.gene40455:intron | 25.0% |
| !! | CTTAATTTCTTTGGTTTCAA+TGG | + | 24207:9041-9060 | MS.gene40455:CDS | 25.0% |
| !!! | GGAAGCATAAATTTATGTTT+TGG | - | 24207:8986-9005 | None:intergenic | 25.0% |
| AATCTTCACAACTGAGAAAT+TGG | - | 24207:7536-7555 | None:intergenic | 30.0% | |
| AGATAAATTTCCAACCATTG+AGG | - | 24207:9163-9182 | None:intergenic | 30.0% | |
| AGGGAATCAACATAATCTAT+CGG | + | 24207:8646-8665 | MS.gene40455:CDS | 30.0% | |
| ATCTGTATGCATTTATCCAA+TGG | + | 24207:8098-8117 | MS.gene40455:CDS | 30.0% | |
| ATCTTCACAACTGAGAAATT+GGG | - | 24207:7535-7554 | None:intergenic | 30.0% | |
| CAACTTGAAAAATCCAATCT+TGG | - | 24207:7460-7479 | None:intergenic | 30.0% | |
| GAAATTTAAGAGAGTTCTTC+AGG | - | 24207:9324-9343 | None:intergenic | 30.0% | |
| GAGATTGCAGAAAATTCTTA+AGG | - | 24207:8353-8372 | None:intergenic | 30.0% | |
| TAAAAACCTCATAGCAAAAC+TGG | - | 24207:8182-8201 | None:intergenic | 30.0% | |
| TAAAACAACACAGCATCAAA+TGG | - | 24207:8401-8420 | None:intergenic | 30.0% | |
| TATCTTCCTAAATGATGTCA+AGG | + | 24207:9178-9197 | MS.gene40455:CDS | 30.0% | |
| TTCTCAGTTGTGAAGATTAA+TGG | + | 24207:7538-7557 | MS.gene40455:CDS | 30.0% | |
| TTGGTTAGTAACTGTTCTTT+GGG | + | 24207:7666-7685 | MS.gene40455:CDS | 30.0% | |
| ! | ACAGTTTGCTTAAGAAAATC+AGG | - | 24207:8786-8805 | None:intergenic | 30.0% |
| ! | ATGCATTTATCCAATGGTTT+TGG | + | 24207:8104-8123 | MS.gene40455:CDS | 30.0% |
| ! | CAGTTTGCTTAAGAAAATCA+GGG | - | 24207:8785-8804 | None:intergenic | 30.0% |
| ! | GTTAATTTCTTTGGCTGTTT+TGG | + | 24207:7783-7802 | MS.gene40455:CDS | 30.0% |
| !! | GTTTTGGATCAAATTCAAGA+AGG | + | 24207:8026-8045 | MS.gene40455:CDS | 30.0% |
| !! | TGCAAATGACTTGTTATTAC+AGG | + | 24207:8887-8906 | MS.gene40455:intron | 30.0% |
| !!! | AGATTATGTTGATTCCCTTT+TGG | - | 24207:8644-8663 | None:intergenic | 30.0% |
| !!! | CAAGATTGGATTTTTCAAGT+TGG | + | 24207:7458-7477 | MS.gene40455:CDS | 30.0% |
| AAAACTGGAATGCAGAAGTT+CGG | - | 24207:8167-8186 | None:intergenic | 35.0% | |
| AAGGTTAAGCCAATGATCAA+TGG | + | 24207:8045-8064 | MS.gene40455:CDS | 35.0% | |
| AATTTCTGCAGTGTGTCAAA+TGG | + | 24207:8524-8543 | MS.gene40455:CDS | 35.0% | |
| ACAGAAGTTCGATTTCATGA+AGG | - | 24207:9285-9304 | None:intergenic | 35.0% | |
| ACCAAGCAACATAAACCATA+TGG | - | 24207:7897-7916 | None:intergenic | 35.0% | |
| ACCTCAGATTTCAAAATTGC+TGG | - | 24207:9461-9480 | None:intergenic | 35.0% | |
| AGAATGCTAAACAAGTTAGG+TGG | + | 24207:7602-7621 | MS.gene40455:CDS | 35.0% | |
| AGGTTAAGCCAATGATCAAT+GGG | + | 24207:8046-8065 | MS.gene40455:CDS | 35.0% | |
| AGTATGAGGAATGTGCAAAT+TGG | - | 24207:7854-7873 | None:intergenic | 35.0% | |
| ATACTTCTGATTTCCAAAGG+TGG | + | 24207:7869-7888 | MS.gene40455:CDS | 35.0% | |
| CTCATACTTCTGATTTCCAA+AGG | + | 24207:7866-7885 | MS.gene40455:CDS | 35.0% | |
| CTTCACTTAACCTTGAAATG+TGG | - | 24207:8810-8829 | None:intergenic | 35.0% | |
| CTTGGTTAGTAACTGTTCTT+TGG | + | 24207:7665-7684 | MS.gene40455:CDS | 35.0% | |
| GAATGCTAAACAAGTTAGGT+GGG | + | 24207:7603-7622 | MS.gene40455:CDS | 35.0% | |
| GAGAACAACTGTAGAAGATA+TGG | + | 24207:9118-9137 | MS.gene40455:CDS | 35.0% | |
| GAGCATACAGTGGTTAATTA+AGG | + | 24207:8599-8618 | MS.gene40455:CDS | 35.0% | |
| GCAAGAATGCTAAACAAGTT+AGG | + | 24207:7599-7618 | MS.gene40455:CDS | 35.0% | |
| GGAATTTGAACCAAAACCAT+TGG | - | 24207:8117-8136 | None:intergenic | 35.0% | |
| TAACCAAGTAACACAACCAA+CGG | - | 24207:7653-7672 | None:intergenic | 35.0% | |
| TCAACATCATCAACCTTGAA+TGG | - | 24207:8075-8094 | None:intergenic | 35.0% | |
| TCCATATGGTTTATGTTGCT+TGG | + | 24207:7893-7912 | MS.gene40455:CDS | 35.0% | |
| TCTTCACAACTGAGAAATTG+GGG | - | 24207:7534-7553 | None:intergenic | 35.0% | |
| TGATCACCTTGACATCATTT+AGG | - | 24207:9187-9206 | None:intergenic | 35.0% | |
| TGCTTAAGAAAATCAGGGTT+TGG | - | 24207:8780-8799 | None:intergenic | 35.0% | |
| TTACAGGATAATCCTGAACT+AGG | + | 24207:8903-8922 | MS.gene40455:intron | 35.0% | |
| ! | ACTTTCAAGGTTGGCATTTT+GGG | + | 24207:7824-7843 | MS.gene40455:CDS | 35.0% |
| ! | CTTTGGAAATCAGAAGTATG+AGG | - | 24207:7868-7887 | None:intergenic | 35.0% |
| ! | GCATTTGTGTTTCTGAGTTT+AGG | - | 24207:8375-8394 | None:intergenic | 35.0% |
| ! | GGGGTGTTTCTTAATTTCTT+TGG | + | 24207:9032-9051 | MS.gene40455:CDS | 35.0% |
| ! | TACTTTCAAGGTTGGCATTT+TGG | + | 24207:7823-7842 | MS.gene40455:CDS | 35.0% |
| ! | TAGATGGTCTTTTGTGAACA+AGG | + | 24207:8938-8957 | MS.gene40455:CDS | 35.0% |
| ! | TGCACAAATTGACTTTATGC+AGG | + | 24207:8488-8507 | MS.gene40455:intron | 35.0% |
| ! | TTGTTGCTTACTTTCAAGGT+TGG | + | 24207:7815-7834 | MS.gene40455:CDS | 35.0% |
| ! | TTTGTTTCTTATCCAATCCG+TGG | + | 24207:7978-7997 | MS.gene40455:CDS | 35.0% |
| !! | TGCTTGGTGCTATTAAGAAA+AGG | + | 24207:7692-7711 | MS.gene40455:CDS | 35.0% |
| !! | TTCAAGGTTGATGATGTTGA+AGG | + | 24207:8075-8094 | MS.gene40455:CDS | 35.0% |
| !!! | GATTGGATTTTTCAAGTTGG+TGG | + | 24207:7461-7480 | MS.gene40455:CDS | 35.0% |
| !!! | TCCAGCAATTTTGAAATCTG+AGG | + | 24207:9457-9476 | MS.gene40455:CDS | 35.0% |
| !!! | TTTTTCAAGTTGGTGGATGA+AGG | + | 24207:7468-7487 | MS.gene40455:CDS | 35.0% |
| AAACCATATGGAACCACCTT+TGG | - | 24207:7885-7904 | None:intergenic | 40.0% | |
| AAGTAGAACAGCAGGTCAAT+GGG | + | 24207:9012-9031 | MS.gene40455:CDS | 40.0% | |
| AATGGATCCCCATTGATCAT+TGG | - | 24207:8057-8076 | None:intergenic | 40.0% | |
| ACAGTGGTTAATTAAGGCTG+AGG | + | 24207:8605-8624 | MS.gene40455:CDS | 40.0% | |
| ACCTCTTTCTCATTGCACAT+TGG | - | 24207:8138-8157 | None:intergenic | 40.0% | |
| ATCAAAGCCCTAGAAGAATC+TGG | + | 24207:9083-9102 | MS.gene40455:CDS | 40.0% | |
| CACAGCCTAAAAAGTTGCAT+AGG | - | 24207:9434-9453 | None:intergenic | 40.0% | |
| CCTGCTGTTCTACTTCAAAA+TGG | - | 24207:9007-9026 | None:intergenic | 40.0% | |
| CTGAGTCATATGAAGCTTAC+AGG | + | 24207:9381-9400 | MS.gene40455:CDS | 40.0% | |
| CTGTAAGCTTCATATGACTC+AGG | - | 24207:9383-9402 | None:intergenic | 40.0% | |
| GGATAATCCTGAACTAGGTT+TGG | + | 24207:8908-8927 | MS.gene40455:intron | 40.0% | |
| GGTTAAGCCAATGATCAATG+GGG | + | 24207:8047-8066 | MS.gene40455:CDS | 40.0% | |
| GTCTCTAAGTGGAACCAAAA+GGG | + | 24207:8627-8646 | MS.gene40455:CDS | 40.0% | |
| TCAAAGCCCTAGAAGAATCT+GGG | + | 24207:9084-9103 | MS.gene40455:CDS | 40.0% | |
| TCACAAAAGACCATCTAGCT+TGG | - | 24207:8935-8954 | None:intergenic | 40.0% | |
| TCCAATGTGCAATGAGAAAG+AGG | + | 24207:8134-8153 | MS.gene40455:CDS | 40.0% | |
| TGAATCAGTAAACGATCCCT+TGG | - | 24207:8555-8574 | None:intergenic | 40.0% | |
| TGGATGAAGGATTCACAGAA+AGG | + | 24207:7481-7500 | MS.gene40455:CDS | 40.0% | |
| TTTCCAAAGGTGGTTCCATA+TGG | + | 24207:7879-7898 | MS.gene40455:CDS | 40.0% | |
| ! | ACCCGAAACAAAGAAGCATA+CGG | - | 24207:8005-8024 | None:intergenic | 40.0% |
| ! | ACCGTATGCTTCTTTGTTTC+GGG | + | 24207:8001-8020 | MS.gene40455:CDS | 40.0% |
| ! | GACCGTATGCTTCTTTGTTT+CGG | + | 24207:8000-8019 | MS.gene40455:CDS | 40.0% |
| ! | GAGGTTGTTGCTTACTTTCA+AGG | + | 24207:7811-7830 | MS.gene40455:CDS | 40.0% |
| ! | TTTGGTTTCAATGGAACTGC+TGG | + | 24207:9050-9069 | MS.gene40455:CDS | 40.0% |
| !! | AACTTCGAAAGTGCCTGAAT+TGG | - | 24207:7949-7968 | None:intergenic | 40.0% |
| !! | ACTGTTCTTTGGGATTTGCT+TGG | + | 24207:7676-7695 | MS.gene40455:CDS | 40.0% |
| !! | TGCATTCCAGTTTTGCTATG+AGG | + | 24207:8173-8192 | MS.gene40455:intron | 40.0% |
| !! | TGGTGCTATTAAGAAAAGGC+TGG | + | 24207:7696-7715 | MS.gene40455:CDS | 40.0% |
| !! | TTCTTTGTTTCGGGTGGTTT+TGG | + | 24207:8010-8029 | MS.gene40455:CDS | 40.0% |
| !!! | CCATTTTGAAGTAGAACAGC+AGG | + | 24207:9004-9023 | MS.gene40455:CDS | 40.0% |
| !!! | TTTGGCTGTTTTGGCTTTTG+AGG | + | 24207:7792-7811 | MS.gene40455:CDS | 40.0% |
| AAAGCCCTAGAAGAATCTGG+GGG | + | 24207:9086-9105 | MS.gene40455:CDS | 45.0% | |
| AGGGAGTGGCTGTTGAAAAA+GGG | + | 24207:7728-7747 | MS.gene40455:CDS | 45.0% | |
| AGTAGAACAGCAGGTCAATG+GGG | + | 24207:9013-9032 | MS.gene40455:CDS | 45.0% | |
| ATGGTGCAGATGCTGCATTT+AGG | + | 24207:7557-7576 | MS.gene40455:CDS | 45.0% | |
| CAAAGCCCTAGAAGAATCTG+GGG | + | 24207:9085-9104 | MS.gene40455:CDS | 45.0% | |
| CATAATCTATCGGCATCGCT+TGG | + | 24207:8656-8675 | MS.gene40455:CDS | 45.0% | |
| CTACATTGCTCCACCAATTC+AGG | + | 24207:7933-7952 | MS.gene40455:CDS | 45.0% | |
| CTGCAGTGTGTCAAATGGAT+TGG | + | 24207:8529-8548 | MS.gene40455:CDS | 45.0% | |
| CTTGTTTAGCATTCTTGCCG+CGG | - | 24207:7597-7616 | None:intergenic | 45.0% | |
| GAAGTAGAACAGCAGGTCAA+TGG | + | 24207:9011-9030 | MS.gene40455:CDS | 45.0% | |
| GAGAGTTCTTCAGGGATCTT+TGG | - | 24207:9315-9334 | None:intergenic | 45.0% | |
| GATCAATGGGGATCCATTCA+AGG | + | 24207:8059-8078 | MS.gene40455:CDS | 45.0% | |
| GCAAACTGTGCCACATTTCA+AGG | + | 24207:8797-8816 | MS.gene40455:CDS | 45.0% | |
| GGTCTCTAAGTGGAACCAAA+AGG | + | 24207:8626-8645 | MS.gene40455:CDS | 45.0% | |
| GTCAGGACTGGATATAAAGC+TGG | + | 24207:8678-8697 | MS.gene40455:CDS | 45.0% | |
| TCAATGGAACTGCTGGTGTT+TGG | + | 24207:9057-9076 | MS.gene40455:CDS | 45.0% | |
| TTAAGGCTGAGGTCTCTAAG+TGG | + | 24207:8616-8635 | MS.gene40455:CDS | 45.0% | |
| TTCACAGAAAGGAACACCAG+TGG | + | 24207:7492-7511 | MS.gene40455:CDS | 45.0% | |
| ! | AACACCAGTGGTGGTGAAAA+TGG | + | 24207:7504-7523 | MS.gene40455:CDS | 45.0% |
| ! | ACAAAGAAGCATACGGTCCA+CGG | - | 24207:7998-8017 | None:intergenic | 45.0% |
| ! | CAGGGCCTATGCAACTTTTT+AGG | + | 24207:9426-9445 | MS.gene40455:CDS | 45.0% |
| ! | CTGATGATGAGAGCATACAG+TGG | + | 24207:8589-8608 | MS.gene40455:CDS | 45.0% |
| ! | GTATGCTTCTTTGTTTCGGG+TGG | + | 24207:8004-8023 | MS.gene40455:CDS | 45.0% |
| ! | TAGGTTTGGTCCAAGCTAGA+TGG | + | 24207:8922-8941 | MS.gene40455:CDS | 45.0% |
| ! | TTGCCGCGGTTTTTATCTAC+CGG | - | 24207:7583-7602 | None:intergenic | 45.0% |
| !! | AAAAGGCTGGTTCGTAGACA+GGG | + | 24207:7709-7728 | MS.gene40455:CDS | 45.0% |
| !! | GTGTCAAATGGATTGGCCAA+GGG | + | 24207:8536-8555 | MS.gene40455:CDS | 45.0% |
| !! | TGTGTCAAATGGATTGGCCA+AGG | + | 24207:8535-8554 | MS.gene40455:CDS | 45.0% |
| !! | TTCGAAAGTGCCTGAATTGG+TGG | - | 24207:7946-7965 | None:intergenic | 45.0% |
| ACAGAAAGGAACACCAGTGG+TGG | + | 24207:7495-7514 | MS.gene40455:CDS | 50.0% | |
| AGGCCGGTAGATAAAAACCG+CGG | + | 24207:7577-7596 | MS.gene40455:CDS | 50.0% | |
| CAGGGAGTGGCTGTTGAAAA+AGG | + | 24207:7727-7746 | MS.gene40455:CDS | 50.0% | |
| CTTAAAGCTCATCGTGCCGT+TGG | + | 24207:7634-7653 | MS.gene40455:CDS | 50.0% | |
| GCTTGGACCAAACCTAGTTC+AGG | - | 24207:8918-8937 | None:intergenic | 50.0% | |
| TCCAACCATTGAGGTGAGCT+CGG | - | 24207:9154-9173 | None:intergenic | 50.0% | |
| TGCAGATGCTGCATTTAGGC+CGG | + | 24207:7561-7580 | MS.gene40455:CDS | 50.0% | |
| ! | ACCAGTGGTGGTGAAAATGG+AGG | + | 24207:7507-7526 | MS.gene40455:CDS | 50.0% |
| ! | GTGCCGTTGGTTGTGTTACT+TGG | + | 24207:7647-7666 | MS.gene40455:CDS | 50.0% |
| ! | TCCTCCATTTTCACCACCAC+TGG | - | 24207:7511-7530 | None:intergenic | 50.0% |
| !! | GAAAAGGCTGGTTCGTAGAC+AGG | + | 24207:7708-7727 | MS.gene40455:CDS | 50.0% |
| AGCAACACCGCTGGCATTCA+GGG | + | 24207:9408-9427 | MS.gene40455:CDS | 55.0% | |
| CCAGCCCCCAGATTCTTCTA+GGG | - | 24207:9093-9112 | None:intergenic | 55.0% | |
| GAAGCATACGGTCCACGGAT+TGG | - | 24207:7993-8012 | None:intergenic | 55.0% | |
| TCCGAGCTCACCTCAATGGT+TGG | + | 24207:9150-9169 | MS.gene40455:CDS | 55.0% | |
| TCTATCGGCATCGCTTGGTC+AGG | + | 24207:8661-8680 | MS.gene40455:CDS | 55.0% | |
| ACAGGAAGCAGCAACACCGC+TGG | + | 24207:9399-9418 | MS.gene40455:CDS | 60.0% | |
| CAGCAACACCGCTGGCATTC+AGG | + | 24207:9407-9426 | MS.gene40455:CDS | 60.0% | |
| CCCTAGAAGAATCTGGGGGC+TGG | + | 24207:9090-9109 | MS.gene40455:CDS | 60.0% | |
| GCATAGGCCCTGAATGCCAG+CGG | - | 24207:9418-9437 | None:intergenic | 60.0% | |
| GCCAGCCCCCAGATTCTTCT+AGG | - | 24207:9094-9113 | None:intergenic | 60.0% | |
| GCTGTCCGAGCTCACCTCAA+TGG | + | 24207:9146-9165 | MS.gene40455:CDS | 60.0% | |
| ! | AGAAGAATCTGGGGGCTGGC+TGG | + | 24207:9094-9113 | MS.gene40455:CDS | 60.0% |
| !! | GCTGGTTCGTAGACAGGGAG+TGG | + | 24207:7714-7733 | MS.gene40455:CDS | 60.0% |
| CGGCATCGCTTGGTCAGGAC+TGG | + | 24207:8666-8685 | MS.gene40455:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24207 | gene | 7451 | 9505 | 7451 | ID=MS.gene40455 |
| 24207 | mRNA | 7451 | 9505 | 7451 | ID=MS.gene40455.t1;Parent=MS.gene40455 |
| 24207 | exon | 7451 | 8155 | 7451 | ID=MS.gene40455.t1.exon1;Parent=MS.gene40455.t1 |
| 24207 | CDS | 7451 | 8155 | 7451 | ID=cds.MS.gene40455.t1;Parent=MS.gene40455.t1 |
| 24207 | exon | 8510 | 8818 | 8510 | ID=MS.gene40455.t1.exon2;Parent=MS.gene40455.t1 |
| 24207 | CDS | 8510 | 8818 | 8510 | ID=cds.MS.gene40455.t1;Parent=MS.gene40455.t1 |
| 24207 | exon | 8909 | 9199 | 8909 | ID=MS.gene40455.t1.exon3;Parent=MS.gene40455.t1 |
| 24207 | CDS | 8909 | 9199 | 8909 | ID=cds.MS.gene40455.t1;Parent=MS.gene40455.t1 |
| 24207 | exon | 9365 | 9505 | 9365 | ID=MS.gene40455.t1.exon4;Parent=MS.gene40455.t1 |
| 24207 | CDS | 9365 | 9505 | 9365 | ID=cds.MS.gene40455.t1;Parent=MS.gene40455.t1 |
| Gene Sequence |
| Protein sequence |
