AlfalfaGEDB | MS.gene40455

M. sativa cultivar XinJiangDaYe / MS.gene40455

KEGG: -
GO: -
PFAM: PF13632.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40455.t1	XP_003603555.1	98.9	474	5	0	1	474	1	474	1.00E-280	975.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40455.t1	Q9SB75	79.1	479	95	3	1	474	1	479	1.7e-228	793.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40455.t1	G7J2T7	98.9	474	5	0	1	474	1	474	7.3e-281	975.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052732	MS.gene40455	0.834205	3.43E-56	-1.69E-46
MS.gene053144	MS.gene40455	0.816962	4.22E-52	-1.69E-46
MS.gene054584	MS.gene40455	0.838916	2.16E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40455.t1	MTR_3g109040	98.945	474	5	0	1	474	1	474	0.0	978
MS.gene40455.t1	MTR_3g109040	98.920	463	5	0	12	474	1	463	0.0	954
MS.gene40455.t1	MTR_4g006010	72.041	490	120	5	1	474	1	489	0.0	723
MS.gene40455.t1	MTR_3g103500	63.306	496	157	7	1	476	1	491	0.0	634
MS.gene40455.t1	MTR_3g103500	63.765	494	154	7	1	474	1	489	0.0	632
MS.gene40455.t1	MTR_6g007807	64.097	454	150	4	24	474	12	455	0.0	611
MS.gene40455.t1	MTR_8g012320	56.855	496	184	6	2	474	4	492	0.0	566
MS.gene40455.t1	MTR_1g061340	50.938	320	156	1	155	473	19	338	1.20e-108	332
MS.gene40455.t1	MTR_7g103590	49.846	325	160	2	151	473	24	347	3.73e-108	331
MS.gene40455.t1	MTR_7g101950	49.062	320	157	2	154	470	24	340	1.34e-107	330

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40455.t1	AT4G31590	78.914	479	96	3	1	474	1	479	0.0	799
MS.gene40455.t1	AT2G24630	75.052	481	115	3	1	476	1	481	0.0	767
MS.gene40455.t1	AT2G24630	75.052	481	115	3	1	476	1	481	0.0	767
MS.gene40455.t1	AT3G28180	65.727	461	136	6	21	474	6	451	0.0	628
MS.gene40455.t1	AT4G07960	61.523	499	165	7	1	476	1	495	0.0	627
MS.gene40455.t1	AT4G07960	61.523	499	165	7	1	476	1	495	0.0	627
MS.gene40455.t1	AT3G07330	58.599	471	188	3	6	474	8	473	0.0	561
MS.gene40455.t1	AT3G07330	58.599	471	188	3	6	474	8	473	0.0	561
MS.gene40455.t1	AT2G35650	50.779	321	155	2	155	473	51	370	3.92e-107	329
MS.gene40455.t1	AT5G03760	52.443	307	143	2	159	463	33	338	4.41e-107	328

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Find 0 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCTTCACAACTGAGAAAT+TGG	-	24207:7536-7555	None:intergenic	30.0%
AGATAAATTTCCAACCATTG+AGG	-	24207:9163-9182	None:intergenic	30.0%
AGGGAATCAACATAATCTAT+CGG	+	24207:8646-8665	MS.gene40455:CDS	30.0%
ATCTGTATGCATTTATCCAA+TGG	+	24207:8098-8117	MS.gene40455:CDS	30.0%
ATCTTCACAACTGAGAAATT+GGG	-	24207:7535-7554	None:intergenic	30.0%
CAACTTGAAAAATCCAATCT+TGG	-	24207:7460-7479	None:intergenic	30.0%
GAAATTTAAGAGAGTTCTTC+AGG	-	24207:9324-9343	None:intergenic	30.0%
GAGATTGCAGAAAATTCTTA+AGG	-	24207:8353-8372	None:intergenic	30.0%
TAAAAACCTCATAGCAAAAC+TGG	-	24207:8182-8201	None:intergenic	30.0%
TAAAACAACACAGCATCAAA+TGG	-	24207:8401-8420	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
24207	gene	7451	9505	7451	ID=MS.gene40455
24207	mRNA	7451	9505	7451	ID=MS.gene40455.t1;Parent=MS.gene40455
24207	exon	7451	8155	7451	ID=MS.gene40455.t1.exon1;Parent=MS.gene40455.t1
24207	CDS	7451	8155	7451	ID=cds.MS.gene40455.t1;Parent=MS.gene40455.t1
24207	exon	8510	8818	8510	ID=MS.gene40455.t1.exon2;Parent=MS.gene40455.t1
24207	CDS	8510	8818	8510	ID=cds.MS.gene40455.t1;Parent=MS.gene40455.t1
24207	exon	8909	9199	8909	ID=MS.gene40455.t1.exon3;Parent=MS.gene40455.t1
24207	CDS	8909	9199	8909	ID=cds.MS.gene40455.t1;Parent=MS.gene40455.t1
24207	exon	9365	9505	9365	ID=MS.gene40455.t1.exon4;Parent=MS.gene40455.t1
24207	CDS	9365	9505	9365	ID=cds.MS.gene40455.t1;Parent=MS.gene40455.t1

Gene Sequence

>MS.gene40455

ATGGCTCCAAGATTGGATTTTTCAAGTTGGTGGATGAAGGATTCACAGAAAGGAACACCAGTGGTGGTGAAAATGGAGGACCCCAATTTCTCAGTTGTGAAGATTAATGGTGCAGATGCTGCATTTAGGCCGGTAGATAAAAACCGCGGCAAGAATGCTAAACAAGTTAGGTGGGTTTTGCTTCTTAAAGCTCATCGTGCCGTTGGTTGTGTTACTTGGTTAGTAACTGTTCTTTGGGATTTGCTTGGTGCTATTAAGAAAAGGCTGGTTCGTAGACAGGGAGTGGCTGTTGAAAAAGGGAAATTGTTGTTTAGAATCATTAGTTTGTTTTTGTTAATTTCTTTGGCTGTTTTGGCTTTTGAGGTTGTTGCTTACTTTCAAGGTTGGCATTTTGGGAATACCAATTTGCACATTCCTCATACTTCTGATTTCCAAAGGTGGTTCCATATGGTTTATGTTGCTTGGTTGACGTTTCGTGCTGACTACATTGCTCCACCAATTCAGGCACTTTCGAAGTTTTGTATTGTTTTGTTTCTTATCCAATCCGTGGACCGTATGCTTCTTTGTTTCGGGTGGTTTTGGATCAAATTCAAGAAGGTTAAGCCAATGATCAATGGGGATCCATTCAAGGTTGATGATGTTGAAGGATCTGTATGCATTTATCCAATGGTTTTGGTTCAAATTCCAATGTGCAATGAGAAAGAGGTATGACACCGAACTTCTGCATTCCAGTTTTGCTATGAGGTTTTTATATCTGATGTGTACGCTACCAGTAAGTTTCAATGTAATAGTGTTAACTAATTTTTTCAAGTCAAACTTAAATTTTGCAAATGTCACGAGAAAATAGAAGAGTGTGCGTCGAGTCTGACAAACACACTATTCTTTTAAAATTTTAACTCCCTTAAGAATTTTCTGCAATCTCCTAAACTCAGAAACACAAATGCTTTCCATTTGATGCTGTGTTGTTTTATGAATTTTTAACTATTATAAGCAATCAATGACATTGACAAAATATGGAGTTCATCTTTTGTTCATCTTGCACAAATTGACTTTATGCAGGTGTATGAGCAGTCAATTTCTGCAGTGTGTCAAATGGATTGGCCAAGGGATCGTTTACTGATTCAAGTACTTGACGATTCTGATGATGAGAGCATACAGTGGTTAATTAAGGCTGAGGTCTCTAAGTGGAACCAAAAGGGAATCAACATAATCTATCGGCATCGCTTGGTCAGGACTGGATATAAAGCTGGAAATCTTAATTCTGCAATGAACTGTGACTACGTGAAAGACTATGAATTTGTTGCAATATTTGATGCAGACTTTCAACCAAACCCTGATTTTCTTAAGCAAACTGTGCCACATTTCAAGGTTAAGTGAAGATCATGACATATATATTCAGATACGATTATCGATAAGTGTTAACTTGTTTTAAGATTTGCAAATGACTTGTTATTACAGGATAATCCTGAACTAGGTTTGGTCCAAGCTAGATGGTCTTTTGTGAACAAGGATGAGAATTTGTTGACTCGTCTCCAAAACATAAATTTATGCTTCCATTTTGAAGTAGAACAGCAGGTCAATGGGGTGTTTCTTAATTTCTTTGGTTTCAATGGAACTGCTGGTGTTTGGAGAATCAAAGCCCTAGAAGAATCTGGGGGCTGGCTGGAGAGAACAACTGTAGAAGATATGGACATTGCTGTCCGAGCTCACCTCAATGGTTGGAAATTTATCTTCCTAAATGATGTCAAGGTGATCATAAATGACAGTTTATTTTCAGTTCGTATCTGTTATCTCCTTTCTTTCATAGTGCATAATACTGATAGTTATGTCACCTTCATGAAATCGAACTTCTGTGTTCAGACCAAAGATCCCTGAAGAACTCTCTTAAATTTCTTAATTGTGTTTAAATTTCAGGTACTTTGTGAAGTTCCTGAGTCATATGAAGCTTACAGGAAGCAGCAACACCGCTGGCATTCAGGGCCTATGCAACTTTTTAGGCTGTGTCTTCCAGCAATTTTGAAATCTGAGGTATATCTGATACACAGCTTGATGTAA

Protein sequence

>MS.gene40455.t1

MAPRLDFSSWWMKDSQKGTPVVVKMEDPNFSVVKINGADAAFRPVDKNRGKNAKQVRWVLLLKAHRAVGCVTWLVTVLWDLLGAIKKRLVRRQGVAVEKGKLLFRIISLFLLISLAVLAFEVVAYFQGWHFGNTNLHIPHTSDFQRWFHMVYVAWLTFRADYIAPPIQALSKFCIVLFLIQSVDRMLLCFGWFWIKFKKVKPMINGDPFKVDDVEGSVCIYPMVLVQIPMCNEKEVYEQSISAVCQMDWPRDRLLIQVLDDSDDESIQWLIKAEVSKWNQKGINIIYRHRLVRTGYKAGNLNSAMNCDYVKDYEFVAIFDADFQPNPDFLKQTVPHFKDNPELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAILKSEVYLIHSLM