Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42355.t1 | XP_013462103.1 | 93.1 | 231 | 15 | 1 | 1 | 230 | 1 | 231 | 6.70E-97 | 363.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42355.t1 | A0A072V439 | 93.1 | 231 | 15 | 1 | 1 | 230 | 1 | 231 | 4.8e-97 | 363.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051871 | MS.gene42355 | 0.819673 | 1.03E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42355.t1 | MTR_3g111670 | 98.701 | 231 | 2 | 1 | 1 | 230 | 1 | 231 | 2.71e-169 | 465 |
| MS.gene42355.t1 | MTR_1g021970 | 83.550 | 231 | 32 | 4 | 1 | 230 | 1 | 226 | 1.68e-136 | 382 |
| MS.gene42355.t1 | MTR_1g021970 | 83.117 | 231 | 32 | 5 | 1 | 230 | 1 | 225 | 3.78e-134 | 376 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42355.t1 | AT1G19330 | 76.522 | 230 | 51 | 3 | 1 | 230 | 1 | 227 | 6.01e-111 | 318 |
| MS.gene42355.t1 | AT1G19330 | 75.319 | 235 | 50 | 4 | 1 | 230 | 1 | 232 | 3.12e-109 | 314 |
| MS.gene42355.t1 | AT1G19330 | 75.000 | 236 | 50 | 5 | 1 | 230 | 1 | 233 | 5.43e-108 | 311 |
| MS.gene42355.t1 | AT1G75060 | 69.787 | 235 | 64 | 5 | 1 | 230 | 1 | 233 | 2.40e-106 | 306 |
| MS.gene42355.t1 | AT1G75060 | 69.362 | 235 | 64 | 6 | 1 | 230 | 1 | 232 | 7.83e-104 | 300 |
| MS.gene42355.t1 | AT1G75060 | 70.370 | 189 | 50 | 4 | 1 | 184 | 1 | 188 | 9.89e-81 | 240 |
Find 61 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACTAAGGTTGTTGTTAC+TGG | 0.194013 | 3.2:-89176701 | MS.gene42355:CDS |
| AGCTGCTCCTTTGATGGGTT+TGG | 0.231841 | 3.2:+89174703 | None:intergenic |
| CTCTGGTGATTCACAGTCTA+AGG | 0.252293 | 3.2:-89175060 | MS.gene42355:CDS |
| GGACGAGTTGCAGGTCATTA+AGG | 0.256826 | 3.2:-89174349 | MS.gene42355:CDS |
| TCTGTTCTTGTTGGTCTTCA+AGG | 0.325218 | 3.2:-89176662 | MS.gene42355:CDS |
| GTTAAGAAAGCTGTTGGATT+AGG | 0.325633 | 3.2:-89176635 | MS.gene42355:CDS |
| GCAATGGAATGGATCAGATA+TGG | 0.328027 | 3.2:-89175630 | MS.gene42355:CDS |
| ATAATGCAGGTTCTTACTAA+TGG | 0.333844 | 3.2:-89175743 | MS.gene42355:intron |
| GCTGCTCCTTTGATGGGTTT+GGG | 0.336272 | 3.2:+89174704 | None:intergenic |
| TCAACTAGCTGCTCCTTTGA+TGG | 0.362105 | 3.2:+89174697 | None:intergenic |
| TGGCTGCATTGTGGAGATAT+TGG | 0.369691 | 3.2:-89174868 | MS.gene42355:CDS |
| GAAGCAAATGGACGAGTTGC+AGG | 0.380501 | 3.2:-89174358 | MS.gene42355:intron |
| GACGAGTTGCAGGTCATTAA+GGG | 0.386548 | 3.2:-89174348 | MS.gene42355:CDS |
| GCGACTCATTTGCAAAGCTT+TGG | 0.398902 | 3.2:-89176770 | MS.gene42355:CDS |
| CGTACAAAATCTGTTCTTGT+TGG | 0.403520 | 3.2:-89176671 | MS.gene42355:CDS |
| ATTGCACGTTATCAAATTCA+AGG | 0.405029 | 3.2:+89175648 | None:intergenic |
| TTGGATTAGGTGGTTGGCAT+TGG | 0.430118 | 3.2:-89176622 | MS.gene42355:CDS |
| CACAGAATGCATAGATCATT+GGG | 0.437599 | 3.2:-89175113 | MS.gene42355:CDS |
| ATTAGGTGGTTGGCATTGGC+TGG | 0.438971 | 3.2:-89176618 | MS.gene42355:intron |
| GCACAGAATGCATAGATCAT+TGG | 0.439918 | 3.2:-89175114 | MS.gene42355:CDS |
| GGCGTTGTTAAGAAAGCTGT+TGG | 0.447387 | 3.2:-89176641 | MS.gene42355:CDS |
| TGACTTGAGCAAGCTTGAAA+TGG | 0.450063 | 3.2:-89174888 | MS.gene42355:CDS |
| TTGCAAAGCTTTGGTGGTGG+TGG | 0.460216 | 3.2:-89176761 | MS.gene42355:CDS |
| ACTCATTTGCAAAGCTTTGG+TGG | 0.481146 | 3.2:-89176767 | MS.gene42355:CDS |
| CAACTAGCTGCTCCTTTGAT+GGG | 0.486144 | 3.2:+89174698 | None:intergenic |
| TCTGGTGATTCACAGTCTAA+GGG | 0.496708 | 3.2:-89175059 | MS.gene42355:CDS |
| AGTTCAGTTAACGGTGGTGG+TGG | 0.498339 | 3.2:-89176797 | MS.gene42355:CDS |
| ATCATCTTCTTCATTGCCAG+TGG | 0.499955 | 3.2:+89175673 | None:intergenic |
| GGGTCCGTTACTATGCCTCA+TGG | 0.500458 | 3.2:-89175038 | MS.gene42355:CDS |
| AAGCTGTTGGATTAGGTGGT+TGG | 0.508473 | 3.2:-89176628 | MS.gene42355:CDS |
| GCAATGGAAAGTTCAGTTAA+CGG | 0.508721 | 3.2:-89176806 | MS.gene42355:CDS |
| ACCATGAGTAGGTCCTTCTC+TGG | 0.512079 | 3.2:-89175077 | MS.gene42355:CDS |
| TGTGTTACCTCGTCATACTA+AGG | 0.520326 | 3.2:-89176714 | MS.gene42355:CDS |
| TACTATGCCTCATGGGTCCA+TGG | 0.522112 | 3.2:-89175030 | MS.gene42355:intron |
| TTGAATTTGATAACGTGCAA+TGG | 0.522138 | 3.2:-89175646 | MS.gene42355:CDS |
| CATTTGCAAAGCTTTGGTGG+TGG | 0.527791 | 3.2:-89176764 | MS.gene42355:CDS |
| AGACGAAATGATTGAAGCAA+TGG | 0.538460 | 3.2:-89176822 | None:intergenic |
| GAGGCATTTCATGTCCCAGC+TGG | 0.539302 | 3.2:-89174665 | MS.gene42355:intron |
| CAATGGAATGGATCAGATAT+GGG | 0.541429 | 3.2:-89175629 | MS.gene42355:intron |
| AAGAAAGCTGTTGGATTAGG+TGG | 0.556533 | 3.2:-89176632 | MS.gene42355:CDS |
| ATTTGTCAATGCTGCAAAGA+GGG | 0.558483 | 3.2:-89174325 | MS.gene42355:CDS |
| TTTGATAACGTGCAATGGAA+TGG | 0.564949 | 3.2:-89175641 | MS.gene42355:CDS |
| TCATCTTCTTCATTGCCAGT+GGG | 0.573087 | 3.2:+89175674 | None:intergenic |
| AGCGTGATTGAAGCACCCAC+TGG | 0.574928 | 3.2:-89175689 | MS.gene42355:CDS |
| GAAAGTTCAGTTAACGGTGG+TGG | 0.587165 | 3.2:-89176800 | MS.gene42355:CDS |
| TGTCGTCCCAAACCCATCAA+AGG | 0.596940 | 3.2:-89174710 | MS.gene42355:CDS |
| GGTCCGTTACTATGCCTCAT+GGG | 0.599829 | 3.2:-89175037 | MS.gene42355:CDS |
| AGACTGTGAATCACCAGAGA+AGG | 0.609518 | 3.2:+89175064 | None:intergenic |
| ACCAGAGAAGGACCTACTCA+TGG | 0.614361 | 3.2:+89175076 | None:intergenic |
| GAATTGAAGTGAAGCTACAA+AGG | 0.619531 | 3.2:-89175721 | MS.gene42355:CDS |
| CTGGTGATTCACAGTCTAAG+GGG | 0.620120 | 3.2:-89175058 | MS.gene42355:CDS |
| AGCTAGTTGATGTTGTTCAG+AGG | 0.634780 | 3.2:-89174684 | MS.gene42355:CDS |
| AGCTTGAAATGGCTGCATTG+TGG | 0.645923 | 3.2:-89174877 | MS.gene42355:CDS |
| TGGTGGTGATAGTAGTGAAG+AGG | 0.648847 | 3.2:-89176744 | MS.gene42355:CDS |
| CACACAAGTCTCACAAATCG+AGG | 0.652726 | 3.2:-89175136 | MS.gene42355:CDS |
| GATTTGTCAATGCTGCAAAG+AGG | 0.660589 | 3.2:-89174326 | MS.gene42355:CDS |
| GGACCCATGAGGCATAGTAA+CGG | 0.688810 | 3.2:+89175034 | None:intergenic |
| CATGTCACAAGACCATGAGT+AGG | 0.700516 | 3.2:-89175088 | MS.gene42355:CDS |
| TGATATACCATGGACCCATG+AGG | 0.707981 | 3.2:+89175023 | None:intergenic |
| ACAACAACCTTAGTATGACG+AGG | 0.714849 | 3.2:+89176707 | None:intergenic |
| ATGGAAAGTTCAGTTAACGG+TGG | 0.729999 | 3.2:-89176803 | MS.gene42355:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATTAAAAATAGTAC+CGG | + | chr3.2:89175919-89175938 | None:intergenic | 10.0% |
| !! | ATTGTTAAAAAAAATCATTT+AGG | + | chr3.2:89175344-89175363 | None:intergenic | 10.0% |
| !! | TAACACAATTTATTTAATAT+TGG | + | chr3.2:89175091-89175110 | None:intergenic | 10.0% |
| !! | TATTAAATAAATTGTGTTAT+TGG | - | chr3.2:89175092-89175111 | MS.gene42355:CDS | 10.0% |
| !!! | AATTTAGATTATTTGAAATT+AGG | - | chr3.2:89175318-89175337 | MS.gene42355:intron | 10.0% |
| !!! | ATTGTTTATTAAGTTTATTT+TGG | - | chr3.2:89175006-89175025 | MS.gene42355:intron | 10.0% |
| !!! | GTTTCTATTTTTTATTATTA+AGG | - | chr3.2:89174548-89174567 | MS.gene42355:intron | 10.0% |
| !!! | TTGTTTATTAAGTTTATTTT+GGG | - | chr3.2:89175007-89175026 | MS.gene42355:intron | 10.0% |
| !! | TATCAGATAATTTACAAATT+CGG | + | chr3.2:89176629-89176648 | None:intergenic | 15.0% |
| !! | TGGTATATATAGTAAAAAAA+AGG | + | chr3.2:89175849-89175868 | None:intergenic | 15.0% |
| !! | TTATTAATAATAATTCTGAC+TGG | - | chr3.2:89175545-89175564 | MS.gene42355:intron | 15.0% |
| !!! | ATATGCATTTTTATTTTTCA+TGG | - | chr3.2:89175165-89175184 | MS.gene42355:intron | 15.0% |
| !!! | TAGTTTATTAATTGTTGTTT+TGG | - | chr3.2:89175753-89175772 | MS.gene42355:intron | 15.0% |
| !!! | TGTTTATTAAGTTTATTTTG+GGG | - | chr3.2:89175008-89175027 | MS.gene42355:intron | 15.0% |
| !! | AAATCAAAACTTGAATGATT+TGG | + | chr3.2:89174797-89174816 | None:intergenic | 20.0% |
| !! | ATATTGGAAAATAATACCAA+AGG | + | chr3.2:89175075-89175094 | None:intergenic | 20.0% |
| !! | GTTAATCATTATTATTGAGA+TGG | + | chr3.2:89175624-89175643 | None:intergenic | 20.0% |
| !! | TGAAATTGAAATGATAAGAA+TGG | + | chr3.2:89174596-89174615 | None:intergenic | 20.0% |
| !!! | AAGATAGAAACTTGATAATA+TGG | + | chr3.2:89176592-89176611 | None:intergenic | 20.0% |
| !!! | AATTTTGATTCTCAAAATGT+TGG | - | chr3.2:89174824-89174843 | MS.gene42355:intron | 20.0% |
| !!! | ACCAAAAGATTAGTTATTAT+AGG | + | chr3.2:89176300-89176319 | None:intergenic | 20.0% |
| !!! | ATTTTGATTCTCAAAATGTT+GGG | - | chr3.2:89174825-89174844 | MS.gene42355:intron | 20.0% |
| !!! | TAACCGTTTTTTTTTTCTTT+CGG | - | chr3.2:89174723-89174742 | MS.gene42355:intron | 20.0% |
| !!! | TCCTATAATAACTAATCTTT+TGG | - | chr3.2:89176296-89176315 | MS.gene42355:intron | 20.0% |
| ! | AACCCGAAAGAAAAAAAAAA+CGG | + | chr3.2:89174729-89174748 | None:intergenic | 25.0% |
| ! | AATTTGAACTGTTGTAATTG+AGG | - | chr3.2:89176548-89176567 | MS.gene42355:intron | 25.0% |
| ! | AGTTGAATCACATTAATTCT+AGG | + | chr3.2:89175672-89175691 | None:intergenic | 25.0% |
| ! | GGATAAGAATTCATAAAGTA+GGG | + | chr3.2:89174776-89174795 | None:intergenic | 25.0% |
| ! | TATCTTATTGAAGATGCTTA+TGG | - | chr3.2:89176325-89176344 | MS.gene42355:intron | 25.0% |
| ! | TCATTATTATTGAGATGGAA+TGG | + | chr3.2:89175619-89175638 | None:intergenic | 25.0% |
| ! | TGCAATTAACTAATTATCAG+TGG | - | chr3.2:89175224-89175243 | MS.gene42355:intron | 25.0% |
| ! | TGGATAAGAATTCATAAAGT+AGG | + | chr3.2:89174777-89174796 | None:intergenic | 25.0% |
| ! | TTTAGCTGTATAAATAATGC+AGG | - | chr3.2:89175364-89175383 | MS.gene42355:intron | 25.0% |
| !! | AAGTTCTACAACAAACTTTT+AGG | + | chr3.2:89176680-89176699 | None:intergenic | 25.0% |
| !! | AATAATTTTTATGTACCAGC+TGG | + | chr3.2:89176473-89176492 | None:intergenic | 25.0% |
| !! | AATCTAATGGGGATTTTATT+TGG | - | chr3.2:89175123-89175142 | MS.gene42355:CDS | 25.0% |
| !! | ACAAGAGTTCTTTATTTCAA+TGG | + | chr3.2:89176526-89176545 | None:intergenic | 25.0% |
| !! | ATAATTTTTATGTACCAGCT+GGG | + | chr3.2:89176472-89176491 | None:intergenic | 25.0% |
| !! | ATTGGATTTTCTGAATCTAA+TGG | - | chr3.2:89175110-89175129 | MS.gene42355:CDS | 25.0% |
| !! | CTGTTCTGTTTTATCTTAAA+GGG | - | chr3.2:89175573-89175592 | MS.gene42355:intron | 25.0% |
| !! | TTGGATTTTCTGAATCTAAT+GGG | - | chr3.2:89175111-89175130 | MS.gene42355:CDS | 25.0% |
| !!! | AACCGTTTTTTTTTTCTTTC+GGG | - | chr3.2:89174724-89174743 | MS.gene42355:intron | 25.0% |
| !!! | ATCTAATGGGGATTTTATTT+GGG | - | chr3.2:89175124-89175143 | MS.gene42355:CDS | 25.0% |
| !!! | ATTTTTTGCTGTTGTTTATG+TGG | - | chr3.2:89174876-89174895 | MS.gene42355:CDS | 25.0% |
| !!! | GTACGTACTTACTTTTAAAA+TGG | - | chr3.2:89176374-89176393 | MS.gene42355:intron | 25.0% |
| !!! | TACTTTTAAAATGGATTTGC+AGG | - | chr3.2:89176383-89176402 | MS.gene42355:intron | 25.0% |
| !!! | TATTAAAAATAGTACCGGTA+GGG | + | chr3.2:89175914-89175933 | None:intergenic | 25.0% |
| !!! | TTATTAAAAATAGTACCGGT+AGG | + | chr3.2:89175915-89175934 | None:intergenic | 25.0% |
| !!! | TTTTGATTCTCAAAATGTTG+GGG | - | chr3.2:89174826-89174845 | MS.gene42355:intron | 25.0% |
| !!! | TTTTTTGCTGTTGTTTATGT+GGG | - | chr3.2:89174877-89174896 | MS.gene42355:CDS | 25.0% |
| AAAATAATACCAAAGGAGGT+AGG | + | chr3.2:89175068-89175087 | None:intergenic | 30.0% | |
| AAAATTATCTAATGCGTCAG+TGG | + | chr3.2:89176155-89176174 | None:intergenic | 30.0% | |
| ATAATGCAGGTTCTTACTAA+TGG | - | chr3.2:89175377-89175396 | MS.gene42355:intron | 30.0% | |
| ATTGAAATCAAGTTTGTCGT+AGG | - | chr3.2:89175248-89175267 | MS.gene42355:intron | 30.0% | |
| ATTGCACGTTATCAAATTCA+AGG | + | chr3.2:89175475-89175494 | None:intergenic | 30.0% | |
| CAAGAAAGAAACACAATTTC+AGG | + | chr3.2:89176741-89176760 | None:intergenic | 30.0% | |
| TGCATGTTTCTCTTTATTAC+TGG | - | chr3.2:89174941-89174960 | MS.gene42355:intron | 30.0% | |
| TTGGAAAATAATACCAAAGG+AGG | + | chr3.2:89175072-89175091 | None:intergenic | 30.0% | |
| TTTCTCTTTATTACTGGATC+TGG | - | chr3.2:89174947-89174966 | MS.gene42355:intron | 30.0% | |
| TTTCTTTCTTGTGAAGCAAA+TGG | - | chr3.2:89176750-89176769 | MS.gene42355:CDS | 30.0% | |
| ! | CAACAAGAACAGATTTTGTA+CGG | + | chr3.2:89174451-89174470 | None:intergenic | 30.0% |
| ! | CTTTGTATATTTTCTGCAGA+AGG | - | chr3.2:89176208-89176227 | MS.gene42355:intron | 30.0% |
| ! | GATTTAAAGCTGATATACCA+TGG | + | chr3.2:89176110-89176129 | None:intergenic | 30.0% |
| ! | GCTGTTCTGTTTTATCTTAA+AGG | - | chr3.2:89175572-89175591 | MS.gene42355:intron | 30.0% |
| ! | TATTTATTTGTTGACCCTAC+CGG | - | chr3.2:89175897-89175916 | MS.gene42355:intron | 30.0% |
| ! | TGGATTTTCTGAATCTAATG+GGG | - | chr3.2:89175112-89175131 | MS.gene42355:CDS | 30.0% |
| ! | TTCAAACCATTTTCTTGTGT+CGG | - | chr3.2:89174612-89174631 | MS.gene42355:intron | 30.0% |
| !! | TTGAATTTGATAACGTGCAA+TGG | - | chr3.2:89175474-89175493 | MS.gene42355:intron | 30.0% |
| !!! | TTTTAAAATGGATTTGCAGG+TGG | - | chr3.2:89176386-89176405 | MS.gene42355:intron | 30.0% |
| AATTGACCGACACAAGAAAA+TGG | + | chr3.2:89174621-89174640 | None:intergenic | 35.0% | |
| AGTATATTACCTACCTCCTT+TGG | - | chr3.2:89175056-89175075 | MS.gene42355:CDS | 35.0% | |
| ATTTGTCAATGCTGCAAAGA+GGG | - | chr3.2:89176795-89176814 | MS.gene42355:CDS | 35.0% | |
| CAATGGAATGGATCAGATAT+GGG | - | chr3.2:89175491-89175510 | MS.gene42355:intron | 35.0% | |
| CACAGAATGCATAGATCATT+GGG | - | chr3.2:89176007-89176026 | MS.gene42355:intron | 35.0% | |
| CAGAAACAAGTACTAGTACT+CGG | + | chr3.2:89175709-89175728 | None:intergenic | 35.0% | |
| CGTACAAAATCTGTTCTTGT+TGG | - | chr3.2:89174449-89174468 | MS.gene42355:intron | 35.0% | |
| CTGATATGCATGAATTGTGA+TGG | - | chr3.2:89176643-89176662 | MS.gene42355:CDS | 35.0% | |
| GAATTGAAGTGAAGCTACAA+AGG | - | chr3.2:89175399-89175418 | MS.gene42355:intron | 35.0% | |
| GAGAAACATGCAATGAATAC+AGG | + | chr3.2:89174933-89174952 | None:intergenic | 35.0% | |
| GCAATGGAAAGTTCAGTTAA+CGG | - | chr3.2:89174314-89174333 | MS.gene42355:CDS | 35.0% | |
| GGAAAAAAAGACACGCATAA+AGG | + | chr3.2:89175828-89175847 | None:intergenic | 35.0% | |
| GTTAAGAAAGCTGTTGGATT+AGG | - | chr3.2:89174485-89174504 | MS.gene42355:intron | 35.0% | |
| GTTTGCAAAGTGATAGAGTT+TGG | - | chr3.2:89175791-89175810 | MS.gene42355:intron | 35.0% | |
| TACAAATTCGGCGTAATTTG+TGG | + | chr3.2:89176617-89176636 | None:intergenic | 35.0% | |
| ! | CATACTAAGGTTGTTGTTAC+TGG | - | chr3.2:89174419-89174438 | MS.gene42355:intron | 35.0% |
| ! | GCAAAACACTAGAGTCTTTT+TGG | + | chr3.2:89175869-89175888 | None:intergenic | 35.0% |
| ! | GTGATAGAGTTTGGTAACAT+TGG | - | chr3.2:89175800-89175819 | MS.gene42355:intron | 35.0% |
| !! | TTTCTTGTGTCGGTCAATTT+TGG | - | chr3.2:89174622-89174641 | MS.gene42355:intron | 35.0% |
| !! | TTTGATAACGTGCAATGGAA+TGG | - | chr3.2:89175479-89175498 | MS.gene42355:intron | 35.0% |
| ACAACAACCTTAGTATGACG+AGG | + | chr3.2:89174416-89174435 | None:intergenic | 40.0% | |
| ATCATCTTCTTCATTGCCAG+TGG | + | chr3.2:89175450-89175469 | None:intergenic | 40.0% | |
| ATGGAAAGTTCAGTTAACGG+TGG | - | chr3.2:89174317-89174336 | MS.gene42355:CDS | 40.0% | |
| GATTTGTCAATGCTGCAAAG+AGG | - | chr3.2:89176794-89176813 | MS.gene42355:CDS | 40.0% | |
| GCAATGGAATGGATCAGATA+TGG | - | chr3.2:89175490-89175509 | MS.gene42355:intron | 40.0% | |
| GCACAGAATGCATAGATCAT+TGG | - | chr3.2:89176006-89176025 | MS.gene42355:intron | 40.0% | |
| TATCTAATGCGTCAGTGGTA+GGG | + | chr3.2:89176150-89176169 | None:intergenic | 40.0% | |
| TCATCTTCTTCATTGCCAGT+GGG | + | chr3.2:89175449-89175468 | None:intergenic | 40.0% | |
| TCTATCACTTTGCAAACCCA+TGG | + | chr3.2:89175788-89175807 | None:intergenic | 40.0% | |
| TCTGGTGATTCACAGTCTAA+GGG | - | chr3.2:89176061-89176080 | MS.gene42355:intron | 40.0% | |
| TGACTTGAGCAAGCTTGAAA+TGG | - | chr3.2:89176232-89176251 | MS.gene42355:intron | 40.0% | |
| TGTGTTACCTCGTCATACTA+AGG | - | chr3.2:89174406-89174425 | MS.gene42355:intron | 40.0% | |
| TTATCTAATGCGTCAGTGGT+AGG | + | chr3.2:89176151-89176170 | None:intergenic | 40.0% | |
| ! | AAGAAAGCTGTTGGATTAGG+TGG | - | chr3.2:89174488-89174507 | MS.gene42355:intron | 40.0% |
| ! | ACTCATTTGCAAAGCTTTGG+TGG | - | chr3.2:89174353-89174372 | MS.gene42355:CDS | 40.0% |
| ! | AGCTAGTTGATGTTGTTCAG+AGG | - | chr3.2:89176436-89176455 | MS.gene42355:intron | 40.0% |
| !! | TCTGTTCTTGTTGGTCTTCA+AGG | - | chr3.2:89174458-89174477 | MS.gene42355:intron | 40.0% |
| ACTTTGCAAACCCATGGTCA+TGG | + | chr3.2:89175782-89175801 | None:intergenic | 45.0% | |
| AGACTGTGAATCACCAGAGA+AGG | + | chr3.2:89176059-89176078 | None:intergenic | 45.0% | |
| AGCTTGAAATGGCTGCATTG+TGG | - | chr3.2:89176243-89176262 | MS.gene42355:intron | 45.0% | |
| CAACTAGCTGCTCCTTTGAT+GGG | + | chr3.2:89176425-89176444 | None:intergenic | 45.0% | |
| CACACAAGTCTCACAAATCG+AGG | - | chr3.2:89175984-89176003 | MS.gene42355:intron | 45.0% | |
| CATGTCACAAGACCATGAGT+AGG | - | chr3.2:89176032-89176051 | MS.gene42355:intron | 45.0% | |
| CTCTGGTGATTCACAGTCTA+AGG | - | chr3.2:89176060-89176079 | MS.gene42355:intron | 45.0% | |
| CTGGTGATTCACAGTCTAAG+GGG | - | chr3.2:89176062-89176081 | MS.gene42355:intron | 45.0% | |
| GAAAGTTCAGTTAACGGTGG+TGG | - | chr3.2:89174320-89174339 | MS.gene42355:CDS | 45.0% | |
| GACGAGTTGCAGGTCATTAA+GGG | - | chr3.2:89176772-89176791 | MS.gene42355:CDS | 45.0% | |
| GCGACTCATTTGCAAAGCTT+TGG | - | chr3.2:89174350-89174369 | MS.gene42355:CDS | 45.0% | |
| GGCGTTGTTAAGAAAGCTGT+TGG | - | chr3.2:89174479-89174498 | MS.gene42355:intron | 45.0% | |
| TCAACTAGCTGCTCCTTTGA+TGG | + | chr3.2:89176426-89176445 | None:intergenic | 45.0% | |
| TGATATACCATGGACCCATG+AGG | + | chr3.2:89176100-89176119 | None:intergenic | 45.0% | |
| TGGCTGCATTGTGGAGATAT+TGG | - | chr3.2:89176252-89176271 | MS.gene42355:intron | 45.0% | |
| ! | AAGCTGTTGGATTAGGTGGT+TGG | - | chr3.2:89174492-89174511 | MS.gene42355:intron | 45.0% |
| ! | CATTTGCAAAGCTTTGGTGG+TGG | - | chr3.2:89174356-89174375 | MS.gene42355:CDS | 45.0% |
| ! | TGGTGGTGATAGTAGTGAAG+AGG | - | chr3.2:89174376-89174395 | MS.gene42355:intron | 45.0% |
| ! | TTGGATTAGGTGGTTGGCAT+TGG | - | chr3.2:89174498-89174517 | MS.gene42355:intron | 45.0% |
| !!! | GTTTTGGCTTCCATGACCAT+GGG | - | chr3.2:89175769-89175788 | MS.gene42355:intron | 45.0% |
| !!! | TGTTTTGGCTTCCATGACCA+TGG | - | chr3.2:89175768-89175787 | MS.gene42355:intron | 45.0% |
| !! | CATTAATAATTAAAATATTA+AGG | + | chr3.2:89176181-89176200 | None:intergenic | 5.0% |
| ACCAGAGAAGGACCTACTCA+TGG | + | chr3.2:89176047-89176066 | None:intergenic | 50.0% | |
| ACCATGAGTAGGTCCTTCTC+TGG | - | chr3.2:89176043-89176062 | MS.gene42355:intron | 50.0% | |
| GAAGCAAATGGACGAGTTGC+AGG | - | chr3.2:89176762-89176781 | MS.gene42355:CDS | 50.0% | |
| GGACCCATGAGGCATAGTAA+CGG | + | chr3.2:89176089-89176108 | None:intergenic | 50.0% | |
| GGACGAGTTGCAGGTCATTA+AGG | - | chr3.2:89176771-89176790 | MS.gene42355:CDS | 50.0% | |
| GGTCCGTTACTATGCCTCAT+GGG | - | chr3.2:89176083-89176102 | MS.gene42355:intron | 50.0% | |
| TACTATGCCTCATGGGTCCA+TGG | - | chr3.2:89176090-89176109 | MS.gene42355:intron | 50.0% | |
| TGTCGTCCCAAACCCATCAA+AGG | - | chr3.2:89176410-89176429 | MS.gene42355:intron | 50.0% | |
| ! | AGTTCAGTTAACGGTGGTGG+TGG | - | chr3.2:89174323-89174342 | MS.gene42355:CDS | 50.0% |
| !! | AGCTGCTCCTTTGATGGGTT+TGG | + | chr3.2:89176420-89176439 | None:intergenic | 50.0% |
| !! | ATTAGGTGGTTGGCATTGGC+TGG | - | chr3.2:89174502-89174521 | MS.gene42355:intron | 50.0% |
| !! | GCTGCTCCTTTGATGGGTTT+GGG | + | chr3.2:89176419-89176438 | None:intergenic | 50.0% |
| !! | TTGCAAAGCTTTGGTGGTGG+TGG | - | chr3.2:89174359-89174378 | MS.gene42355:intron | 50.0% |
| GGGTCCGTTACTATGCCTCA+TGG | - | chr3.2:89176082-89176101 | MS.gene42355:intron | 55.0% | |
| ! | AGCGTGATTGAAGCACCCAC+TGG | - | chr3.2:89175431-89175450 | MS.gene42355:intron | 55.0% |
| ! | GAGGCATTTCATGTCCCAGC+TGG | - | chr3.2:89176455-89176474 | MS.gene42355:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 89174305 | 89176837 | 89174305 | ID=MS.gene42355 |
| chr3.2 | mRNA | 89174305 | 89176837 | 89174305 | ID=MS.gene42355.t1;Parent=MS.gene42355 |
| chr3.2 | exon | 89176619 | 89176837 | 89176619 | ID=MS.gene42355.t1.exon1;Parent=MS.gene42355.t1 |
| chr3.2 | CDS | 89176619 | 89176837 | 89176619 | ID=cds.MS.gene42355.t1;Parent=MS.gene42355.t1 |
| chr3.2 | exon | 89175630 | 89175756 | 89175630 | ID=MS.gene42355.t1.exon2;Parent=MS.gene42355.t1 |
| chr3.2 | CDS | 89175630 | 89175756 | 89175630 | ID=cds.MS.gene42355.t1;Parent=MS.gene42355.t1 |
| chr3.2 | exon | 89175031 | 89175170 | 89175031 | ID=MS.gene42355.t1.exon3;Parent=MS.gene42355.t1 |
| chr3.2 | CDS | 89175031 | 89175170 | 89175031 | ID=cds.MS.gene42355.t1;Parent=MS.gene42355.t1 |
| chr3.2 | exon | 89174853 | 89174915 | 89174853 | ID=MS.gene42355.t1.exon4;Parent=MS.gene42355.t1 |
| chr3.2 | CDS | 89174853 | 89174915 | 89174853 | ID=cds.MS.gene42355.t1;Parent=MS.gene42355.t1 |
| chr3.2 | exon | 89174666 | 89174737 | 89174666 | ID=MS.gene42355.t1.exon5;Parent=MS.gene42355.t1 |
| chr3.2 | CDS | 89174666 | 89174737 | 89174666 | ID=cds.MS.gene42355.t1;Parent=MS.gene42355.t1 |
| chr3.2 | exon | 89174305 | 89174376 | 89174305 | ID=MS.gene42355.t1.exon6;Parent=MS.gene42355.t1 |
| chr3.2 | CDS | 89174305 | 89174376 | 89174305 | ID=cds.MS.gene42355.t1;Parent=MS.gene42355.t1 |
| Gene Sequence |
| Protein sequence |
