AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42396

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42396.t1 MTR_7g075840 99.029 618 5 1 17 634 51 667 0.0 1272
MS.gene42396.t1 MTR_8g033360 83.448 580 94 1 18 595 18 597 0.0 1009
MS.gene42396.t1 MTR_3g107930 59.638 607 229 4 39 629 57 663 0.0 734
MS.gene42396.t1 MTR_3g107930 66.031 524 176 1 108 629 63 586 0.0 729
MS.gene42396.t1 MTR_2g027740 59.961 512 200 3 119 630 160 666 0.0 655
MS.gene42396.t1 MTR_8g092000 58.547 468 189 1 164 631 118 580 0.0 597
MS.gene42396.t1 MTR_2g015550 48.069 466 233 5 170 629 70 532 1.35e-162 476
MS.gene42396.t1 MTR_7g055600 57.421 411 169 4 224 630 25 433 1.75e-159 465
MS.gene42396.t1 MTR_7g057530 57.421 411 169 4 224 630 25 433 1.75e-159 465
MS.gene42396.t1 MTR_4g109890 46.667 495 245 7 145 630 51 535 8.54e-158 464
MS.gene42396.t1 MTR_2g461670 47.312 465 237 5 170 629 128 589 5.61e-156 461
MS.gene42396.t1 MTR_7g096160 47.186 462 216 3 171 629 216 652 2.47e-153 457
MS.gene42396.t1 MTR_6g016380 48.408 471 223 8 179 630 85 554 1.95e-147 438
MS.gene42396.t1 MTR_2g006790 42.918 466 233 6 170 629 70 508 3.87e-134 403
MS.gene42396.t1 MTR_1g070490 42.251 471 240 7 166 631 156 599 2.90e-125 384
MS.gene42396.t1 MTR_2g082650 41.951 410 219 5 239 629 1 410 2.58e-115 351
MS.gene42396.t1 MTR_7g012370 42.623 427 209 8 216 618 110 524 1.42e-114 354
MS.gene42396.t1 MTR_2g082650 41.346 416 225 5 233 629 124 539 4.30e-114 352
MS.gene42396.t1 MTR_6g013840 44.365 417 213 5 234 631 116 532 2.26e-112 347
MS.gene42396.t1 MTR_4g133570 40.874 389 211 4 260 629 74 462 2.40e-104 324
MS.gene42396.t1 MTR_3g452360 38.322 441 238 11 210 629 101 528 4.43e-95 302
MS.gene42396.t1 MTR_3g452360 39.426 383 210 7 264 629 2 379 3.01e-92 290
MS.gene42396.t1 MTR_7g074680 34.369 483 287 6 157 630 103 564 2.32e-84 275
MS.gene42396.t1 MTR_7g074680 34.440 482 286 6 157 629 143 603 9.14e-84 275
MS.gene42396.t1 MTR_7g074680 34.369 483 287 6 157 630 163 624 1.83e-83 275
MS.gene42396.t1 MTR_7g074680 34.440 482 286 6 157 629 163 623 2.09e-83 275
MS.gene42396.t1 MTR_7g074680 34.369 483 287 6 157 630 183 644 3.57e-83 275
MS.gene42396.t1 MTR_7g012370 42.025 326 162 6 234 537 121 441 1.97e-81 265
MS.gene42396.t1 MTR_7g074680 33.200 500 287 7 157 630 183 661 4.51e-80 266
MS.gene42396.t1 MTR_4g133942 57.000 200 56 3 433 629 160 332 1.39e-67 224
MS.gene42396.t1 MTR_4g133942 46.667 75 35 1 172 246 61 130 2.02e-11 66.2
MS.gene42396.t1 MTR_6g008900 24.776 335 201 12 308 621 64 368 9.52e-21 95.1
MS.gene42396.t1 MTR_4g071620 24.776 335 201 12 308 621 64 368 9.52e-21 95.1
MS.gene42396.t1 MTR_7g109210 29.231 195 130 4 435 621 159 353 1.20e-19 91.7
MS.gene42396.t1 MTR_7g094230 29.714 175 118 3 435 604 151 325 1.44e-19 91.3
MS.gene42396.t1 MTR_4g118030 26.482 253 151 7 386 604 69 320 1.60e-19 90.9
MS.gene42396.t1 MTR_3g092310 29.648 199 124 5 435 621 140 334 3.59e-19 89.7
MS.gene42396.t1 MTR_3g111600 26.768 198 136 5 435 623 80 277 1.90e-17 83.6
MS.gene42396.t1 MTR_5g036580 24.545 330 202 12 305 619 62 359 3.78e-17 84.3
MS.gene42396.t1 MTR_8g078240 27.461 193 129 5 435 616 142 334 9.70e-17 82.4
MS.gene42396.t1 MTR_1g021855 28.141 199 133 5 435 623 165 363 1.27e-16 82.4
MS.gene42396.t1 MTR_5g019220 27.778 198 134 5 435 623 166 363 4.28e-15 77.8
MS.gene42396.t1 MTR_1g089820 29.143 175 119 3 435 604 154 328 9.51e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42396.t1 AT3G61130 76.537 618 139 4 17 631 59 673 0.0 993
MS.gene42396.t1 AT4G38270 63.208 530 189 2 108 631 151 680 0.0 724
MS.gene42396.t1 AT4G38270 63.208 530 189 2 108 631 147 676 0.0 723
MS.gene42396.t1 AT2G46480 60.377 530 203 4 105 631 15 540 0.0 671
MS.gene42396.t1 AT2G46480 60.377 530 203 4 105 631 28 553 0.0 671
MS.gene42396.t1 AT5G47780 64.270 459 162 1 172 630 159 615 0.0 649
MS.gene42396.t1 AT2G46480 56.981 530 196 5 105 631 15 515 0.0 616
MS.gene42396.t1 AT2G46480 56.981 530 196 5 105 631 28 528 0.0 615
MS.gene42396.t1 AT3G25140 55.658 433 179 6 209 630 128 558 2.78e-168 492
MS.gene42396.t1 AT1G18580 48.614 469 229 4 167 627 70 534 6.65e-164 480
MS.gene42396.t1 AT2G20810 47.957 465 231 7 173 629 74 535 9.16e-152 449
MS.gene42396.t1 AT3G02350 52.174 437 201 5 201 630 125 560 1.15e-149 444
MS.gene42396.t1 AT2G30575 44.397 464 231 3 171 631 171 610 1.18e-143 431
MS.gene42396.t1 AT1G06780 44.372 462 231 2 171 629 149 587 2.43e-140 421
MS.gene42396.t1 AT1G06780 44.372 462 231 2 171 629 162 600 3.46e-140 421
MS.gene42396.t1 AT3G01040 45.215 418 210 5 233 631 115 532 5.03e-119 365
MS.gene42396.t1 AT3G01040 45.215 418 210 5 233 631 115 532 5.03e-119 365
MS.gene42396.t1 AT5G15470 45.564 417 208 5 234 631 116 532 6.41e-118 362
MS.gene42396.t1 AT5G54690 38.753 449 244 7 200 629 96 532 8.79e-111 343
MS.gene42396.t1 AT3G01040 42.344 418 189 6 233 631 115 499 2.75e-103 323
MS.gene42396.t1 AT2G38650 36.402 478 277 7 157 629 162 617 1.67e-98 314
MS.gene42396.t1 AT2G38650 36.402 478 277 7 157 629 162 617 1.67e-98 314
MS.gene42396.t1 AT3G58790 36.364 462 257 10 198 629 84 538 4.94e-89 287
MS.gene42396.t1 AT3G58790 38.119 404 224 7 248 629 7 406 1.26e-88 281
MS.gene42396.t1 AT2G38650 37.143 385 216 6 157 537 162 524 3.06e-76 253
MS.gene42396.t1 AT3G06260 30.857 175 116 3 435 604 150 324 4.66e-21 95.5
MS.gene42396.t1 AT4G02130 28.205 195 132 4 435 621 150 344 3.18e-20 93.2
MS.gene42396.t1 AT4G02130 28.205 195 132 4 435 621 150 344 3.18e-20 93.2
MS.gene42396.t1 AT4G02130 28.205 195 132 4 435 621 150 344 3.18e-20 93.2
MS.gene42396.t1 AT1G70090 28.571 196 131 5 435 621 169 364 6.50e-19 89.7
MS.gene42396.t1 AT1G70090 28.571 196 131 5 435 621 169 364 6.50e-19 89.7
MS.gene42396.t1 AT3G62660 27.179 195 134 4 435 621 164 358 1.11e-18 88.6
MS.gene42396.t1 AT1G02720 28.718 195 131 4 435 621 165 359 1.64e-18 88.2
MS.gene42396.t1 AT1G02720 28.718 195 131 4 435 621 165 359 1.64e-18 88.2
MS.gene42396.t1 AT3G28340 28.351 194 129 6 433 616 153 346 2.20e-18 87.8
MS.gene42396.t1 AT1G19300 27.778 198 134 5 435 623 150 347 1.88e-17 84.7
MS.gene42396.t1 AT1G24170 23.913 322 192 10 318 621 81 367 2.10e-16 82.0
MS.gene42396.t1 AT3G50760 26.396 197 136 4 433 620 134 330 4.92e-15 77.4
MS.gene42396.t1 AT1G13250 24.759 311 194 9 318 620 56 334 7.00e-13 70.9

Find 145 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACTGATAAACTAAATTT+TGG 0.147550 7.1:+27401610 MS.gene42396:CDS
CAGCTTGTGCTTACCTCTTT+TGG 0.165480 7.1:-27399780 None:intergenic
TCTTGTCTAAGATGTGTTTC+TGG 0.168293 7.1:-27400112 None:intergenic
GTTCCCTATGACTGAGAATT+TGG 0.196098 7.1:+27401277 MS.gene42396:CDS
TCCACAAGTTTATCCGAAAT+TGG 0.201752 7.1:+27401870 MS.gene42396:CDS
GAAATAATCTTTCTGCTTCT+TGG 0.205764 7.1:+27399944 MS.gene42396:CDS
GACAGGGTACTATGGAAATT+AGG 0.250416 7.1:+27402500 MS.gene42396:CDS
CCTATGTTGTTGGCTGTTGC+AGG 0.258186 7.1:+27399707 MS.gene42396:CDS
TAAGCCGTGTTTGCAGTTCT+TGG 0.267033 7.1:-27400878 None:intergenic
TATGACTGCAAGTTGGTTAT+TGG 0.275774 7.1:+27401089 MS.gene42396:CDS
ATATCACAGGTGGCAGAATT+TGG 0.278377 7.1:+27402143 MS.gene42396:CDS
AGAAGGATTTGACTGGATTA+TGG 0.290586 7.1:+27401929 MS.gene42396:CDS
ACCCTTCTGGCTAGCCTTAC+GGG 0.301649 7.1:-27400270 None:intergenic
AAAAGAATCTTATCCAATTT+CGG 0.301889 7.1:-27401883 None:intergenic
AAAGAGAGTCAGCGTGCTTT+AGG 0.304821 7.1:+27400900 MS.gene42396:CDS
ATGGTTATACTTGACATATT+TGG 0.307908 7.1:-27402714 None:intergenic
CTGCTTCTTGGAGAGTTGTT+GGG 0.314790 7.1:+27399956 MS.gene42396:CDS
GAGAAGGAAGGAAGATCTTC+AGG 0.324973 7.1:+27400145 MS.gene42396:CDS
CCAGGGCTAATGACATTCTA+TGG 0.326202 7.1:+27402533 MS.gene42396:CDS
TCTGCTTCTTGGAGAGTTGT+TGG 0.331359 7.1:+27399955 MS.gene42396:CDS
CACCCTTCTGGCTAGCCTTA+CGG 0.339727 7.1:-27400271 None:intergenic
CCTATTCTCAGACAATGTTT+TGG 0.343893 7.1:+27401325 MS.gene42396:CDS
TGACAAAGTATCGTCCTTAC+TGG 0.346721 7.1:+27402690 MS.gene42396:CDS
TCAGTTGATTCAGCAGTTCT+TGG 0.348249 7.1:+27400723 MS.gene42396:CDS
CAAAACATTGTCTGAGAATA+GGG 0.349585 7.1:-27401324 None:intergenic
AATGGGCCAAGTTCTTTCTA+AGG 0.354321 7.1:+27401052 MS.gene42396:CDS
TCATGGCATGTACTCGGTTT+GGG 0.356589 7.1:+27402578 MS.gene42396:CDS
TTCTTGGTAAATACAACCTT+TGG 0.362391 7.1:+27400739 MS.gene42396:CDS
ATCATGGCATGTACTCGGTT+TGG 0.363039 7.1:+27402577 MS.gene42396:CDS
TGCCTTCTGTTCTCTCCATT+TGG 0.363246 7.1:-27399733 None:intergenic
TATGTCCAGCACGAATGATA+TGG 0.364399 7.1:+27399897 MS.gene42396:CDS
AAGAAGCAGAAAGATTATTT+CGG 0.364907 7.1:-27399942 None:intergenic
AGTATAACCATCCTTATCTT+AGG 0.371790 7.1:+27402726 MS.gene42396:CDS
CTTGTCTAAGATGTGTTTCT+GGG 0.373678 7.1:-27400111 None:intergenic
TTAACCAAATTCTCAGTCAT+AGG 0.376964 7.1:-27401281 None:intergenic
CCAAAACATTGTCTGAGAAT+AGG 0.379751 7.1:-27401325 None:intergenic
CTTTCGCCTTAGAAAGAACT+TGG 0.387580 7.1:-27401058 None:intergenic
TGGGAGGAGGTAGTAATCTA+TGG 0.391808 7.1:-27401240 None:intergenic
AGTTGGTTATTGGGAAAGTA+AGG 0.391814 7.1:+27401099 MS.gene42396:CDS
ATGACTGCAAGTTGGTTATT+GGG 0.393638 7.1:+27401090 MS.gene42396:CDS
AAGAATGATGCTCACCCTTC+TGG 0.396798 7.1:-27400283 None:intergenic
ACAGGGTACTATGGAAATTA+GGG 0.397082 7.1:+27402501 MS.gene42396:CDS
AATGAACATGTTTGATTTGA+AGG 0.399962 7.1:+27402092 MS.gene42396:CDS
GTCATTGCTATCTCTAACCA+TGG 0.402027 7.1:-27402671 None:intergenic
ACTGCTGATGAGCAGGTTAG+AGG 0.405243 7.1:+27401134 MS.gene42396:CDS
GGCTGCTGAGTTGGTACAAC+AGG 0.408103 7.1:+27400650 MS.gene42396:CDS
AATGAAAGAGTATTATTTCA+AGG 0.412072 7.1:+27401759 MS.gene42396:CDS
TTGAGCATTGAAAGATACTT+TGG 0.416508 7.1:-27401829 None:intergenic
AGAATGAAGACAGGGTACTA+TGG 0.423957 7.1:+27402492 MS.gene42396:intron
ATAATCCAGTCAAATCCTTC+TGG 0.433499 7.1:-27401927 None:intergenic
TTGGTAAATACAACCTTTGG+AGG 0.442344 7.1:+27400742 MS.gene42396:CDS
GACTTCAAACGCAACAAATC+AGG 0.442440 7.1:+27399984 MS.gene42396:CDS
AGCTTACAGTTCCTAAGATA+AGG 0.446048 7.1:-27402737 None:intergenic
CGCAAAGCGGGCTGCTGAGT+TGG 0.447096 7.1:+27400641 MS.gene42396:CDS
TGATCCCAATGCTTGTGGTT+GGG 0.448672 7.1:+27402062 MS.gene42396:CDS
GATTCAAGCTGTCTCAAGAC+TGG 0.449905 7.1:-27401730 None:intergenic
AGTTAAGATATTTGTCGAAT+CGG 0.454272 7.1:-27402011 None:intergenic
GATAAGCAGTGAATTCCATT+TGG 0.456313 7.1:-27401206 None:intergenic
GATGCGAGATCAGATCATTA+TGG 0.457993 7.1:+27400806 MS.gene42396:CDS
ACATGCCATGATTTATTTAG+CGG 0.458664 7.1:-27402566 None:intergenic
AATTCCATTTGGTATGGTCT+TGG 0.460571 7.1:-27401195 None:intergenic
AATGCTTGTGGTTGGGCATA+CGG 0.463683 7.1:+27402069 MS.gene42396:CDS
AGGTGAAACACATGCTTTGA+AGG 0.468782 7.1:-27401586 None:intergenic
ATGTCCAGCACGAATGATAT+GGG 0.468872 7.1:+27399898 MS.gene42396:CDS
TTGACATATTTGGTCCAGTA+AGG 0.471463 7.1:-27402704 None:intergenic
AAAGAGTATTATTTCAAGGC+AGG 0.473099 7.1:+27401763 MS.gene42396:CDS
TGCAGCAATTAATAGAGAAA+AGG 0.478481 7.1:+27400616 MS.gene42396:intron
TTATGGAATGTGGATCTTCA+TGG 0.483883 7.1:+27401946 MS.gene42396:CDS
TCCAATTTCGGATAAACTTG+TGG 0.484620 7.1:-27401871 None:intergenic
GATCTTCATGGAAAAGTTAA+CGG 0.487784 7.1:+27401958 MS.gene42396:CDS
CACATCCGCTAAATAAATCA+TGG 0.490767 7.1:+27402561 MS.gene42396:CDS
TTTGATTTCAGAATGAAGAC+AGG 0.492079 7.1:+27402483 MS.gene42396:intron
GCTACAAACTGCTGATGAGC+AGG 0.495112 7.1:+27401127 MS.gene42396:CDS
AGAGAAAAGGATCGCAAAGC+GGG 0.496855 7.1:+27400629 MS.gene42396:CDS
TCTTGGCAGCCAACTGACTA+AGG 0.499672 7.1:-27401178 None:intergenic
TATGCCCAACCACAAGCATT+GGG 0.502397 7.1:-27402066 None:intergenic
CCATAGAATGTCATTAGCCC+TGG 0.504949 7.1:-27402533 None:intergenic
TAGGGCATAATGATAAAGAC+TGG 0.506359 7.1:-27401306 None:intergenic
TCTTAGACAAGAAGTTCAAA+AGG 0.513227 7.1:+27400123 MS.gene42396:CDS
GCAGGCCACCCATCCACTAC+TGG 0.513960 7.1:+27401781 MS.gene42396:CDS
ACATAGATTGTAGCTTTACC+AGG 0.515583 7.1:-27401664 None:intergenic
CTGCAACAGCCAACAACATA+GGG 0.515813 7.1:-27399706 None:intergenic
CTTGTGGAAGATAGAACCTC+AGG 0.518942 7.1:-27401855 None:intergenic
AAAATGTTGATGAATTTAAG+TGG 0.519458 7.1:+27401689 MS.gene42396:CDS
TGTAAGCTAAGTGAATGGTC+TGG 0.522229 7.1:+27402752 MS.gene42396:CDS
ATCTCCGTACGATCTATACT+TGG 0.524349 7.1:-27402608 None:intergenic
GTTGTCCAGAAGGATTTGAC+TGG 0.529202 7.1:+27401922 MS.gene42396:CDS
CCTGCAACAGCCAACAACAT+AGG 0.531038 7.1:-27399707 None:intergenic
TTGATCCCAATGCTTGTGGT+TGG 0.532084 7.1:+27402061 MS.gene42396:CDS
GCAGTGAATTCCATTTGGTA+TGG 0.537356 7.1:-27401201 None:intergenic
AGGCCCCATATCATTCGTGC+TGG 0.538645 7.1:-27399902 None:intergenic
GTATGCCCAACCACAAGCAT+TGG 0.539148 7.1:-27402067 None:intergenic
CAGTCCAAGTATAGATCGTA+CGG 0.543562 7.1:+27402604 MS.gene42396:CDS
AAGCACATTCCTTAGTCAGT+TGG 0.552027 7.1:+27401169 MS.gene42396:CDS
GCTGCCAAGACCATACCAAA+TGG 0.554333 7.1:+27401191 MS.gene42396:CDS
AACTTTGATCCCAATGCTTG+TGG 0.555666 7.1:+27402057 MS.gene42396:CDS
AGAATGCTGATTCTACCGTT+CGG 0.555890 7.1:+27400781 MS.gene42396:CDS
AGATCAGATCATTATGGCTA+GGG 0.557672 7.1:+27400812 MS.gene42396:CDS
GGAGGTAGTAATCTATGGTA+AGG 0.557714 7.1:-27401235 None:intergenic
ACATTACTGGCATATATCAC+AGG 0.557897 7.1:+27402130 MS.gene42396:CDS
TAACCAAATTCTCAGTCATA+GGG 0.564966 7.1:-27401280 None:intergenic
ACAAGAAGTTCAAAAGGAGA+AGG 0.565190 7.1:+27400129 MS.gene42396:CDS
TCCCGTAAGGCTAGCCAGAA+GGG 0.568105 7.1:+27400269 MS.gene42396:CDS
GAGATCAGATCATTATGGCT+AGG 0.570674 7.1:+27400811 MS.gene42396:CDS
GTCCCGTAAGGCTAGCCAGA+AGG 0.574160 7.1:+27400268 MS.gene42396:CDS
AAATTAGGGACATTACCTCC+AGG 0.574173 7.1:+27402515 MS.gene42396:CDS
ACATGTTTGATTTGAAGGTG+TGG 0.576976 7.1:+27402097 MS.gene42396:CDS
AATAAATCATGGCATGTACT+CGG 0.577057 7.1:+27402572 MS.gene42396:CDS
GGCTGTTGCAGGCTACCAAA+TGG 0.577386 7.1:+27399718 MS.gene42396:CDS
TTAGAAGCACCAGTAGTGGA+TGG 0.580206 7.1:-27401790 None:intergenic
GAAGTTCAAAAGGAGAAGGA+AGG 0.583365 7.1:+27400133 MS.gene42396:CDS
GAGATTAGAAGCACCAGTAG+TGG 0.588353 7.1:-27401794 None:intergenic
TCAATTGTATGACTGCAAGT+TGG 0.592735 7.1:+27401082 MS.gene42396:CDS
GGAACTGTAAGCTAAGTGAA+TGG 0.593776 7.1:+27402747 MS.gene42396:CDS
TACCAAATGGAGAGAACAGA+AGG 0.593932 7.1:+27399731 MS.gene42396:CDS
CTGATCTCGCATCAACCGAA+CGG 0.595642 7.1:-27400796 None:intergenic
TTTCAATGCTCAACCACCTG+AGG 0.596049 7.1:+27401839 MS.gene42396:CDS
TACAGTTCCTAAGATAAGGA+TGG 0.597078 7.1:-27402733 None:intergenic
ATTCAAGCTGTCTCAAGACT+GGG 0.597835 7.1:-27401729 None:intergenic
TGTACCAAGAACTGCAAACA+CGG 0.602677 7.1:+27400874 MS.gene42396:CDS
AATTTAGTTTATCAGTAACA+AGG 0.603779 7.1:-27401606 None:intergenic
TGATGACATTGTTGTCCAGA+AGG 0.605837 7.1:+27401912 MS.gene42396:CDS
TTTGACTGGATTATGGAATG+TGG 0.606404 7.1:+27401936 MS.gene42396:CDS
ATTGTGCATACCTCTGGTGT+AGG 0.607000 7.1:-27400944 None:intergenic
TAGAAGCACCAGTAGTGGAT+GGG 0.607302 7.1:-27401789 None:intergenic
ATGCAGCAGGTCTTCCTCAG+TGG 0.620368 7.1:+27400238 MS.gene42396:intron
CTCAACTGTTGTGAATGCAA+AGG 0.621934 7.1:+27401367 MS.gene42396:CDS
AAGCACCAGTAGTGGATGGG+TGG 0.630751 7.1:-27401786 None:intergenic
GTTGGTTATTGGGAAAGTAA+GGG 0.635336 7.1:+27401100 MS.gene42396:CDS
GAGTCAGCGTGCTTTAGGTG+AGG 0.637586 7.1:+27400905 MS.gene42396:CDS
ACAATGGTAATATGAAGCCA+TGG 0.641443 7.1:+27402654 MS.gene42396:CDS
TTGATTTCAGAATGAAGACA+GGG 0.646041 7.1:+27402484 MS.gene42396:intron
AGTGGACTGATAGTCCCGTA+AGG 0.647693 7.1:+27400256 MS.gene42396:CDS
AGGGCATAATGATAAAGACT+GGG 0.655474 7.1:-27401305 None:intergenic
GCAGCAGTTGTACACTACAA+TGG 0.656287 7.1:+27402638 MS.gene42396:CDS
TAGAATGTCATTAGCCCTGG+AGG 0.657306 7.1:-27402530 None:intergenic
AATTAGGGACATTACCTCCA+GGG 0.657912 7.1:+27402516 MS.gene42396:CDS
TAGATTGTAGCTTTACCAGG+AGG 0.679016 7.1:-27401661 None:intergenic
TGTCCAGCACGAATGATATG+GGG 0.682822 7.1:+27399899 MS.gene42396:CDS
TAGAGAAAAGGATCGCAAAG+CGG 0.700971 7.1:+27400628 MS.gene42396:CDS
AACGGTGCAGTTGAAACATG+TGG 0.702671 7.1:+27401976 MS.gene42396:CDS
TTACTGGCATATATCACAGG+TGG 0.707903 7.1:+27402133 MS.gene42396:CDS
GTGGAAGATAGAACCTCAGG+TGG 0.712503 7.1:-27401852 None:intergenic
CTGATGCTGACCTACACCAG+AGG 0.718609 7.1:+27400934 MS.gene42396:CDS
ACGGGACTATCAGTCCACTG+AGG 0.806472 7.1:-27400252 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTTATCAAATAATAGA+TGG - chr7.1:27401507-27401526 None:intergenic 10.0%
!!! ATTAGTTTTAAAATAGAAAT+TGG - chr7.1:27402300-27402319 None:intergenic 10.0%
!! AATCAAACATGAAAAAAAAA+TGG - chr7.1:27402470-27402489 None:intergenic 15.0%
!! TTAATGAAAAATTAATGAGA+AGG - chr7.1:27400219-27400238 None:intergenic 15.0%
!! TTCACTAAAGATAATTAATT+AGG - chr7.1:27401015-27401034 None:intergenic 15.0%
!! AAAAGAATCTTATCCAATTT+CGG - chr7.1:27401886-27401905 None:intergenic 20.0%
!! AACATAAGTTAATGAATGAA+GGG - chr7.1:27401544-27401563 None:intergenic 20.0%
!! TACAAACACAATTTAGTTAA+TGG - chr7.1:27400344-27400363 None:intergenic 20.0%
!!! AAAATGTTGATGAATTTAAG+TGG + chr7.1:27401689-27401708 MS.gene42396:CDS 20.0%
!!! AATGAAAGAGTATTATTTCA+AGG + chr7.1:27401759-27401778 MS.gene42396:CDS 20.0%
!!! AATTTAGTTTATCAGTAACA+AGG - chr7.1:27401609-27401628 None:intergenic 20.0%
!!! GTTACTGATAAACTAAATTT+TGG + chr7.1:27401610-27401629 MS.gene42396:CDS 20.0%
! AACAACATAGGGTAAAAAAA+TGG - chr7.1:27399698-27399717 None:intergenic 25.0%
! AAGAAGCAGAAAGATTATTT+CGG - chr7.1:27399945-27399964 None:intergenic 25.0%
! ACATGAAAAAATCAAAGCAA+TGG + chr7.1:27401034-27401053 MS.gene42396:CDS 25.0%
! ACATTAAAATCAGTAGCAAT+AGG - chr7.1:27400070-27400089 None:intergenic 25.0%
! AGGTGAAATAAAATAAAGCA+TGG - chr7.1:27400199-27400218 None:intergenic 25.0%
! AGTTAAGATATTTGTCGAAT+CGG - chr7.1:27402014-27402033 None:intergenic 25.0%
! ATGGTTATACTTGACATATT+TGG - chr7.1:27402717-27402736 None:intergenic 25.0%
! CAACATAAGTTAATGAATGA+AGG - chr7.1:27401545-27401564 None:intergenic 25.0%
! CAATAAAAACCACATATTCA+TGG - chr7.1:27401638-27401657 None:intergenic 25.0%
! CATGAAAAAATCAAAGCAAT+GGG + chr7.1:27401035-27401054 MS.gene42396:CDS 25.0%
! GGTGAAATAAAATAAAGCAT+GGG - chr7.1:27400198-27400217 None:intergenic 25.0%
! GTGAAATAAAATAAAGCATG+GGG - chr7.1:27400197-27400216 None:intergenic 25.0%
! TCTAATCAATACCATATTGT+AGG + chr7.1:27399861-27399880 MS.gene42396:intron 25.0%
!! CAAATCCATCATCTTTAAAA+AGG - chr7.1:27401452-27401471 None:intergenic 25.0%
!! CATGCTATTTGTATATGATA+AGG - chr7.1:27400425-27400444 None:intergenic 25.0%
!! TAAATCTCTTTTTCCAAAAG+AGG + chr7.1:27399767-27399786 MS.gene42396:CDS 25.0%
!! TAATTTTTCATTAATGCAGC+AGG + chr7.1:27400225-27400244 MS.gene42396:intron 25.0%
!! TTACATCATGTTTCTATTCT+CGG + chr7.1:27402191-27402210 MS.gene42396:intron 25.0%
!!! AATGAACATGTTTGATTTGA+AGG + chr7.1:27402092-27402111 MS.gene42396:CDS 25.0%
!!! ACAATATGGTATTGATTAGA+AGG - chr7.1:27399861-27399880 None:intergenic 25.0%
!!! ACATTCCTTTTTAAAGATGA+TGG + chr7.1:27401444-27401463 MS.gene42396:intron 25.0%
!!! ATTTTTTTACCCTATGTTGT+TGG + chr7.1:27399697-27399716 MS.gene42396:CDS 25.0%
!!! CTTTTGGAAAAAGAGATTTA+AGG - chr7.1:27399767-27399786 None:intergenic 25.0%
!!! TCAAAGTTTTTTGCAATATG+TGG - chr7.1:27402045-27402064 None:intergenic 25.0%
AACATCAAGAACCTACAATA+TGG - chr7.1:27399875-27399894 None:intergenic 30.0%
AAGTTAATGAATGAAGGGTT+GGG - chr7.1:27401539-27401558 None:intergenic 30.0%
AATAAATCATGGCATGTACT+CGG + chr7.1:27402572-27402591 MS.gene42396:CDS 30.0%
AATAGGACAATAATGCCTTT+CGG - chr7.1:27400053-27400072 None:intergenic 30.0%
ACATGCCATGATTTATTTAG+CGG - chr7.1:27402569-27402588 None:intergenic 30.0%
AGTATAACCATCCTTATCTT+AGG + chr7.1:27402726-27402745 MS.gene42396:CDS 30.0%
ATCAAGGCTACTATTATTGT+AGG - chr7.1:27400479-27400498 None:intergenic 30.0%
CAAAACATTGTCTGAGAATA+GGG - chr7.1:27401327-27401346 None:intergenic 30.0%
GAAATAATCTTTCTGCTTCT+TGG + chr7.1:27399944-27399963 MS.gene42396:CDS 30.0%
GAGCAAATTGAACATAACAT+CGG + chr7.1:27402167-27402186 MS.gene42396:intron 30.0%
GATCTTCATGGAAAAGTTAA+CGG + chr7.1:27401958-27401977 MS.gene42396:CDS 30.0%
TAACCAAATTCTCAGTCATA+GGG - chr7.1:27401283-27401302 None:intergenic 30.0%
TAAGTTAATGAATGAAGGGT+TGG - chr7.1:27401540-27401559 None:intergenic 30.0%
TCTTAGACAAGAAGTTCAAA+AGG + chr7.1:27400123-27400142 MS.gene42396:CDS 30.0%
TGAAAATATTGTTTGACCTG+TGG + chr7.1:27400517-27400536 MS.gene42396:intron 30.0%
TGCAGCAATTAATAGAGAAA+AGG + chr7.1:27400616-27400635 MS.gene42396:intron 30.0%
TTAACCAAATTCTCAGTCAT+AGG - chr7.1:27401284-27401303 None:intergenic 30.0%
TTCTTGGTAAATACAACCTT+TGG + chr7.1:27400739-27400758 MS.gene42396:CDS 30.0%
TTGATTTCAGAATGAAGACA+GGG + chr7.1:27402484-27402503 MS.gene42396:intron 30.0%
! AGTCTTTTATGATACATGTG+CGG + chr7.1:27401402-27401421 MS.gene42396:intron 30.0%
! TTTCATTTTCTTTCCTCCAA+AGG - chr7.1:27400758-27400777 None:intergenic 30.0%
! TTTGATTTCAGAATGAAGAC+AGG + chr7.1:27402483-27402502 MS.gene42396:intron 30.0%
!! AAAGAGTATTATTTCAAGGC+AGG + chr7.1:27401763-27401782 MS.gene42396:CDS 30.0%
!! ATGGTATTGATTAGAAGGTT+GGG - chr7.1:27399856-27399875 None:intergenic 30.0%
!! TATGGTATTGATTAGAAGGT+TGG - chr7.1:27399857-27399876 None:intergenic 30.0%
!! TTGAGCATTGAAAGATACTT+TGG - chr7.1:27401832-27401851 None:intergenic 30.0%
AAGCACCACATTAAAAGGTA+TGG - chr7.1:27400382-27400401 None:intergenic 35.0%
AATTCCATTTGGTATGGTCT+TGG - chr7.1:27401198-27401217 None:intergenic 35.0%
ACAAGAAGTTCAAAAGGAGA+AGG + chr7.1:27400129-27400148 MS.gene42396:CDS 35.0%
ACAATGGTAATATGAAGCCA+TGG + chr7.1:27402654-27402673 MS.gene42396:CDS 35.0%
ACATTACTGGCATATATCAC+AGG + chr7.1:27402130-27402149 MS.gene42396:CDS 35.0%
AGAAGGATTTGACTGGATTA+TGG + chr7.1:27401929-27401948 MS.gene42396:CDS 35.0%
AGATCAGATCATTATGGCTA+GGG + chr7.1:27400812-27400831 MS.gene42396:CDS 35.0%
AGCTTACAGTTCCTAAGATA+AGG - chr7.1:27402740-27402759 None:intergenic 35.0%
AGGCTACTATTATTGTAGGT+TGG - chr7.1:27400475-27400494 None:intergenic 35.0%
AGGGCATAATGATAAAGACT+GGG - chr7.1:27401308-27401327 None:intergenic 35.0%
AGTTGGTTATTGGGAAAGTA+AGG + chr7.1:27401099-27401118 MS.gene42396:CDS 35.0%
ATAATCCAGTCAAATCCTTC+TGG - chr7.1:27401930-27401949 None:intergenic 35.0%
ATAGGACAATAATGCCTTTC+GGG - chr7.1:27400052-27400071 None:intergenic 35.0%
ATCACAAGCACCACATTAAA+AGG - chr7.1:27400387-27400406 None:intergenic 35.0%
CACATCCGCTAAATAAATCA+TGG + chr7.1:27402561-27402580 MS.gene42396:CDS 35.0%
CAGAACATCATACTTCATCA+AGG - chr7.1:27400495-27400514 None:intergenic 35.0%
CCAAAACATTGTCTGAGAAT+AGG - chr7.1:27401328-27401347 None:intergenic 35.0%
GATAAGCAGTGAATTCCATT+TGG - chr7.1:27401209-27401228 None:intergenic 35.0%
GCTACTATTATTGTAGGTTG+GGG - chr7.1:27400473-27400492 None:intergenic 35.0%
GGCTACTATTATTGTAGGTT+GGG - chr7.1:27400474-27400493 None:intergenic 35.0%
GTTGGTTATTGGGAAAGTAA+GGG + chr7.1:27401100-27401119 MS.gene42396:CDS 35.0%
TACAGTTCCTAAGATAAGGA+TGG - chr7.1:27402736-27402755 None:intergenic 35.0%
TAGGGCATAATGATAAAGAC+TGG - chr7.1:27401309-27401328 None:intergenic 35.0%
TCAATTGTATGACTGCAAGT+TGG + chr7.1:27401082-27401101 MS.gene42396:CDS 35.0%
TCCAATTTCGGATAAACTTG+TGG - chr7.1:27401874-27401893 None:intergenic 35.0%
TCCACAAGTTTATCCGAAAT+TGG + chr7.1:27401870-27401889 MS.gene42396:CDS 35.0%
TGGAAAAAGAAGGACATTAC+TGG + chr7.1:27402117-27402136 MS.gene42396:CDS 35.0%
TTATGGAATGTGGATCTTCA+TGG + chr7.1:27401946-27401965 MS.gene42396:CDS 35.0%
TTGACATATTTGGTCCAGTA+AGG - chr7.1:27402707-27402726 None:intergenic 35.0%
TTGGTAAATACAACCTTTGG+AGG + chr7.1:27400742-27400761 MS.gene42396:CDS 35.0%
TTTGACTGGATTATGGAATG+TGG + chr7.1:27401936-27401955 MS.gene42396:CDS 35.0%
! ACAGGGTACTATGGAAATTA+GGG + chr7.1:27402501-27402520 MS.gene42396:CDS 35.0%
! ACATAGATTGTAGCTTTACC+AGG - chr7.1:27401667-27401686 None:intergenic 35.0%
! AGCACCACATTAAAAGGTAT+GGG - chr7.1:27400381-27400400 None:intergenic 35.0%
! ATAGGGAACTTTCTCTTTTC+AGG - chr7.1:27401266-27401285 None:intergenic 35.0%
! ATCTCCCATACCTTTTAATG+TGG + chr7.1:27400374-27400393 MS.gene42396:intron 35.0%
! CATGTTTCTATTCTCGGAAT+TGG + chr7.1:27402197-27402216 MS.gene42396:intron 35.0%
! CCTATTCTCAGACAATGTTT+TGG + chr7.1:27401325-27401344 MS.gene42396:CDS 35.0%
! CGGAAATTTTCTAGACTCAA+AGG - chr7.1:27399925-27399944 None:intergenic 35.0%
! CTTGTCTAAGATGTGTTTCT+GGG - chr7.1:27400114-27400133 None:intergenic 35.0%
! GTCTTTTATGATACATGTGC+GGG + chr7.1:27401403-27401422 MS.gene42396:intron 35.0%
! TCTTGTCTAAGATGTGTTTC+TGG - chr7.1:27400115-27400134 None:intergenic 35.0%
! TGGTTTTTATTGAATCCTCC+TGG + chr7.1:27401646-27401665 MS.gene42396:CDS 35.0%
! TTTGAAGGTGTGGAAAAAGA+AGG + chr7.1:27402107-27402126 MS.gene42396:CDS 35.0%
!! AAAGATGATGGATTTGAGCT+TGG + chr7.1:27401456-27401475 MS.gene42396:intron 35.0%
!! ACATGTTTGATTTGAAGGTG+TGG + chr7.1:27402097-27402116 MS.gene42396:CDS 35.0%
!! ATGACTGCAAGTTGGTTATT+GGG + chr7.1:27401090-27401109 MS.gene42396:CDS 35.0%
!! TATGACTGCAAGTTGGTTAT+TGG + chr7.1:27401089-27401108 MS.gene42396:CDS 35.0%
!!! ATTTTGGAGCCATGAATATG+TGG + chr7.1:27401626-27401645 MS.gene42396:CDS 35.0%
AAATTAGGGACATTACCTCC+AGG + chr7.1:27402515-27402534 MS.gene42396:CDS 40.0%
AACTTTGATCCCAATGCTTG+TGG + chr7.1:27402057-27402076 MS.gene42396:CDS 40.0%
AAGCACATTCCTTAGTCAGT+TGG + chr7.1:27401169-27401188 MS.gene42396:CDS 40.0%
AATGGGCCAAGTTCTTTCTA+AGG + chr7.1:27401052-27401071 MS.gene42396:CDS 40.0%
AATTAGGGACATTACCTCCA+GGG + chr7.1:27402516-27402535 MS.gene42396:CDS 40.0%
AGCATGATTCCCTACAGTTA+GGG - chr7.1:27402399-27402418 None:intergenic 40.0%
AGGTGAAACACATGCTTTGA+AGG - chr7.1:27401589-27401608 None:intergenic 40.0%
ATAAAGAAAACTCGCTCCAC+AGG - chr7.1:27400536-27400555 None:intergenic 40.0%
ATATCACAGGTGGCAGAATT+TGG + chr7.1:27402143-27402162 MS.gene42396:CDS 40.0%
ATCTCCGTACGATCTATACT+TGG - chr7.1:27402611-27402630 None:intergenic 40.0%
ATGTCCAGCACGAATGATAT+GGG + chr7.1:27399898-27399917 MS.gene42396:CDS 40.0%
ATTCAAGCTGTCTCAAGACT+GGG - chr7.1:27401732-27401751 None:intergenic 40.0%
CAAACGCAACAAATCAGGTT+AGG + chr7.1:27399989-27400008 MS.gene42396:intron 40.0%
CAGAAAATTGTGCATACCTC+TGG - chr7.1:27400953-27400972 None:intergenic 40.0%
CAGTCCAAGTATAGATCGTA+CGG + chr7.1:27402604-27402623 MS.gene42396:CDS 40.0%
CTCAACTGTTGTGAATGCAA+AGG + chr7.1:27401367-27401386 MS.gene42396:CDS 40.0%
CTTTCGCCTTAGAAAGAACT+TGG - chr7.1:27401061-27401080 None:intergenic 40.0%
GAAGTTCAAAAGGAGAAGGA+AGG + chr7.1:27400133-27400152 MS.gene42396:CDS 40.0%
GACTTCAAACGCAACAAATC+AGG + chr7.1:27399984-27400003 MS.gene42396:CDS 40.0%
GAGATCAGATCATTATGGCT+AGG + chr7.1:27400811-27400830 MS.gene42396:CDS 40.0%
GATGCGAGATCAGATCATTA+TGG + chr7.1:27400806-27400825 MS.gene42396:CDS 40.0%
GCAGTGAATTCCATTTGGTA+TGG - chr7.1:27401204-27401223 None:intergenic 40.0%
GGAACTGTAAGCTAAGTGAA+TGG + chr7.1:27402747-27402766 MS.gene42396:CDS 40.0%
GGAGGTAGTAATCTATGGTA+AGG - chr7.1:27401238-27401257 None:intergenic 40.0%
GTCATTGCTATCTCTAACCA+TGG - chr7.1:27402674-27402693 None:intergenic 40.0%
GTTCCCTATGACTGAGAATT+TGG + chr7.1:27401277-27401296 MS.gene42396:CDS 40.0%
GTTGTTGTCTTTGACATTGC+AGG + chr7.1:27401561-27401580 MS.gene42396:intron 40.0%
TACCAAATGGAGAGAACAGA+AGG + chr7.1:27399731-27399750 MS.gene42396:CDS 40.0%
TAGAGAAAAGGATCGCAAAG+CGG + chr7.1:27400628-27400647 MS.gene42396:CDS 40.0%
TAGGACAATAATGCCTTTCG+GGG - chr7.1:27400051-27400070 None:intergenic 40.0%
TATGTCCAGCACGAATGATA+TGG + chr7.1:27399897-27399916 MS.gene42396:CDS 40.0%
TGATGACATTGTTGTCCAGA+AGG + chr7.1:27401912-27401931 MS.gene42396:CDS 40.0%
TGTAAGCTAAGTGAATGGTC+TGG + chr7.1:27402752-27402771 MS.gene42396:CDS 40.0%
TGTACCAAGAACTGCAAACA+CGG + chr7.1:27400874-27400893 MS.gene42396:CDS 40.0%
TTACTGGCATATATCACAGG+TGG + chr7.1:27402133-27402152 MS.gene42396:CDS 40.0%
! AGAATGAAGACAGGGTACTA+TGG + chr7.1:27402492-27402511 MS.gene42396:intron 40.0%
! GACAGGGTACTATGGAAATT+AGG + chr7.1:27402500-27402519 MS.gene42396:CDS 40.0%
! TAGATTGTAGCTTTACCAGG+AGG - chr7.1:27401664-27401683 None:intergenic 40.0%
! TCAGTTGATTCAGCAGTTCT+TGG + chr7.1:27400723-27400742 MS.gene42396:CDS 40.0%
!! AGAATGCTGATTCTACCGTT+CGG + chr7.1:27400781-27400800 MS.gene42396:CDS 40.0%
!! GTATTGATTAGAAGGTTGGG+AGG - chr7.1:27399853-27399872 None:intergenic 40.0%
!! TGACAAAGTATCGTCCTTAC+TGG + chr7.1:27402690-27402709 MS.gene42396:CDS 40.0%
!!! GGAACTTTCTCTTTTCAGGT+GGG - chr7.1:27401262-27401281 None:intergenic 40.0%
AAAGAGAGTCAGCGTGCTTT+AGG + chr7.1:27400900-27400919 MS.gene42396:CDS 45.0%
AACCGAGGAATCTAGACTGT+TGG - chr7.1:27402359-27402378 None:intergenic 45.0%
AACGGTGCAGTTGAAACATG+TGG + chr7.1:27401976-27401995 MS.gene42396:CDS 45.0%
AAGAATGATGCTCACCCTTC+TGG - chr7.1:27400286-27400305 None:intergenic 45.0%
AATGCTTGTGGTTGGGCATA+CGG + chr7.1:27402069-27402088 MS.gene42396:CDS 45.0%
ACTGTTGCAAGCAAAACACG+TGG - chr7.1:27401484-27401503 None:intergenic 45.0%
AGAAGGGTGAGCATCATTCT+TGG + chr7.1:27400285-27400304 MS.gene42396:intron 45.0%
AGAGAAAAGGATCGCAAAGC+GGG + chr7.1:27400629-27400648 MS.gene42396:CDS 45.0%
AGCCAACAGTCTAGATTCCT+CGG + chr7.1:27402354-27402373 MS.gene42396:intron 45.0%
AGGACAATAATGCCTTTCGG+GGG - chr7.1:27400050-27400069 None:intergenic 45.0%
ATCATGGCATGTACTCGGTT+TGG + chr7.1:27402577-27402596 MS.gene42396:CDS 45.0%
ATTGTGCATACCTCTGGTGT+AGG - chr7.1:27400947-27400966 None:intergenic 45.0%
CAACCACGAATCTCGAATCT+CGG + chr7.1:27402248-27402267 MS.gene42396:intron 45.0%
CCAGGGCTAATGACATTCTA+TGG + chr7.1:27402533-27402552 MS.gene42396:CDS 45.0%
CCATAGAATGTCATTAGCCC+TGG - chr7.1:27402536-27402555 None:intergenic 45.0%
CTGCAACAGCCAACAACATA+GGG - chr7.1:27399709-27399728 None:intergenic 45.0%
CTGCTTCTTGGAGAGTTGTT+GGG + chr7.1:27399956-27399975 MS.gene42396:CDS 45.0%
CTTGTGGAAGATAGAACCTC+AGG - chr7.1:27401858-27401877 None:intergenic 45.0%
GAGAAGGAAGGAAGATCTTC+AGG + chr7.1:27400145-27400164 MS.gene42396:CDS 45.0%
GAGCATGATTCCCTACAGTT+AGG - chr7.1:27402400-27402419 None:intergenic 45.0%
GATTCAAGCTGTCTCAAGAC+TGG - chr7.1:27401733-27401752 None:intergenic 45.0%
GCAGCAGTTGTACACTACAA+TGG + chr7.1:27402638-27402657 MS.gene42396:CDS 45.0%
GTTGTCCAGAAGGATTTGAC+TGG + chr7.1:27401922-27401941 MS.gene42396:CDS 45.0%
TAAGCCGTGTTTGCAGTTCT+TGG - chr7.1:27400881-27400900 None:intergenic 45.0%
TAGAATGTCATTAGCCCTGG+AGG - chr7.1:27402533-27402552 None:intergenic 45.0%
TATGCCCAACCACAAGCATT+GGG - chr7.1:27402069-27402088 None:intergenic 45.0%
TCATGGCATGTACTCGGTTT+GGG + chr7.1:27402578-27402597 MS.gene42396:CDS 45.0%
TCTGCTTCTTGGAGAGTTGT+TGG + chr7.1:27399955-27399974 MS.gene42396:CDS 45.0%
TGATCCCAATGCTTGTGGTT+GGG + chr7.1:27402062-27402081 MS.gene42396:CDS 45.0%
TGCCTTCTGTTCTCTCCATT+TGG - chr7.1:27399736-27399755 None:intergenic 45.0%
TGGGAGGAGGTAGTAATCTA+TGG - chr7.1:27401243-27401262 None:intergenic 45.0%
TGTCCAGCACGAATGATATG+GGG + chr7.1:27399899-27399918 MS.gene42396:CDS 45.0%
TTGATCCCAATGCTTGTGGT+TGG + chr7.1:27402061-27402080 MS.gene42396:CDS 45.0%
TTTCAATGCTCAACCACCTG+AGG + chr7.1:27401839-27401858 MS.gene42396:CDS 45.0%
! AAGTTTGATTTCCCCCCGAA+AGG + chr7.1:27400035-27400054 MS.gene42396:intron 45.0%
! CAGCTTGTGCTTACCTCTTT+TGG - chr7.1:27399783-27399802 None:intergenic 45.0%
!! GAGATTAGAAGCACCAGTAG+TGG - chr7.1:27401797-27401816 None:intergenic 45.0%
!! GGGAACTTTCTCTTTTCAGG+TGG - chr7.1:27401263-27401282 None:intergenic 45.0%
!! TAGAAGCACCAGTAGTGGAT+GGG - chr7.1:27401792-27401811 None:intergenic 45.0%
!! TTAGAAGCACCAGTAGTGGA+TGG - chr7.1:27401793-27401812 None:intergenic 45.0%
!!! ACTTTCTCTTTTCAGGTGGG+AGG - chr7.1:27401259-27401278 None:intergenic 45.0%
ACTGCTGATGAGCAGGTTAG+AGG + chr7.1:27401134-27401153 MS.gene42396:CDS 50.0%
AGTCTAGATTCCTCGGTTGC+AGG + chr7.1:27402361-27402380 MS.gene42396:intron 50.0%
CCTGCAACAGCCAACAACAT+AGG - chr7.1:27399710-27399729 None:intergenic 50.0%
CTGATCTCGCATCAACCGAA+CGG - chr7.1:27400799-27400818 None:intergenic 50.0%
GAATCTCGAATCTCGGCTGT+TGG + chr7.1:27402255-27402274 MS.gene42396:intron 50.0%
GCTACAAACTGCTGATGAGC+AGG + chr7.1:27401127-27401146 MS.gene42396:CDS 50.0%
GCTGCCAAGACCATACCAAA+TGG + chr7.1:27401191-27401210 MS.gene42396:CDS 50.0%
GGACAATAATGCCTTTCGGG+GGG - chr7.1:27400049-27400068 None:intergenic 50.0%
GTATGCCCAACCACAAGCAT+TGG - chr7.1:27402070-27402089 None:intergenic 50.0%
GTGGAAGATAGAACCTCAGG+TGG - chr7.1:27401855-27401874 None:intergenic 50.0%
GTGTGCTTGCCCTAACTGTA+GGG + chr7.1:27402387-27402406 MS.gene42396:intron 50.0%
TCTTGGCAGCCAACTGACTA+AGG - chr7.1:27401181-27401200 None:intergenic 50.0%
TGGTTGCGTGCAGTACTATG+TGG - chr7.1:27402234-27402253 None:intergenic 50.0%
TGTGTGCTTGCCCTAACTGT+AGG + chr7.1:27402386-27402405 MS.gene42396:intron 50.0%
! ACTGTTGGCTGAGGATCAGA+CGG - chr7.1:27402344-27402363 None:intergenic 50.0%
! CCTATGTTGTTGGCTGTTGC+AGG + chr7.1:27399707-27399726 MS.gene42396:CDS 50.0%
! GGAATCTAGACTGTTGGCTG+AGG - chr7.1:27402353-27402372 None:intergenic 50.0%
!! AGTGGACTGATAGTCCCGTA+AGG + chr7.1:27400256-27400275 MS.gene42396:CDS 50.0%
!!! TTCTCTTTTCAGGTGGGAGG+AGG - chr7.1:27401256-27401275 None:intergenic 50.0%
ACGGGACTATCAGTCCACTG+AGG - chr7.1:27400255-27400274 None:intergenic 55.0%
AGGCCCCATATCATTCGTGC+TGG - chr7.1:27399905-27399924 None:intergenic 55.0%
ATGCAGCAGGTCTTCCTCAG+TGG + chr7.1:27400238-27400257 MS.gene42396:intron 55.0%
CAGCCGAGATTCGAGATTCG+TGG - chr7.1:27402254-27402273 None:intergenic 55.0%
CTGATGCTGACCTACACCAG+AGG + chr7.1:27400934-27400953 MS.gene42396:CDS 55.0%
GGCTGTTGCAGGCTACCAAA+TGG + chr7.1:27399718-27399737 MS.gene42396:CDS 55.0%
! GAGTCAGCGTGCTTTAGGTG+AGG + chr7.1:27400905-27400924 MS.gene42396:CDS 55.0%
! TCCCGTAAGGCTAGCCAGAA+GGG + chr7.1:27400269-27400288 MS.gene42396:CDS 55.0%
!! AAGCACCAGTAGTGGATGGG+TGG - chr7.1:27401789-27401808 None:intergenic 55.0%
!! ACCCTTCTGGCTAGCCTTAC+GGG - chr7.1:27400273-27400292 None:intergenic 55.0%
!! CACCCTTCTGGCTAGCCTTA+CGG - chr7.1:27400274-27400293 None:intergenic 55.0%
!! GGCTGCTGAGTTGGTACAAC+AGG + chr7.1:27400650-27400669 MS.gene42396:CDS 55.0%
AGCACACAGTCCTGCAACCG+AGG - chr7.1:27402374-27402393 None:intergenic 60.0%
! GTCCCGTAAGGCTAGCCAGA+AGG + chr7.1:27400268-27400287 MS.gene42396:CDS 60.0%
GCAGGCCACCCATCCACTAC+TGG + chr7.1:27401781-27401800 MS.gene42396:CDS 65.0%
!! CGCAAAGCGGGCTGCTGAGT+TGG + chr7.1:27400641-27400660 MS.gene42396:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 27399678 27402778 27399678 ID=MS.gene42396
chr7.1 mRNA 27399678 27402778 27399678 ID=MS.gene42396.t1;Parent=MS.gene42396
chr7.1 exon 27399678 27399788 27399678 ID=MS.gene42396.t1.exon1;Parent=MS.gene42396.t1
chr7.1 CDS 27399678 27399788 27399678 ID=cds.MS.gene42396.t1;Parent=MS.gene42396.t1
chr7.1 exon 27399883 27400005 27399883 ID=MS.gene42396.t1.exon2;Parent=MS.gene42396.t1
chr7.1 CDS 27399883 27400005 27399883 ID=cds.MS.gene42396.t1;Parent=MS.gene42396.t1
chr7.1 exon 27400103 27400166 27400103 ID=MS.gene42396.t1.exon3;Parent=MS.gene42396.t1
chr7.1 CDS 27400103 27400166 27400103 ID=cds.MS.gene42396.t1;Parent=MS.gene42396.t1
chr7.1 exon 27400244 27400290 27400244 ID=MS.gene42396.t1.exon4;Parent=MS.gene42396.t1
chr7.1 CDS 27400244 27400290 27400244 ID=cds.MS.gene42396.t1;Parent=MS.gene42396.t1
chr7.1 exon 27400621 27400955 27400621 ID=MS.gene42396.t1.exon5;Parent=MS.gene42396.t1
chr7.1 CDS 27400621 27400955 27400621 ID=cds.MS.gene42396.t1;Parent=MS.gene42396.t1
chr7.1 exon 27401031 27401388 27401031 ID=MS.gene42396.t1.exon6;Parent=MS.gene42396.t1
chr7.1 CDS 27401031 27401388 27401031 ID=cds.MS.gene42396.t1;Parent=MS.gene42396.t1
chr7.1 exon 27401583 27402164 27401583 ID=MS.gene42396.t1.exon7;Parent=MS.gene42396.t1
chr7.1 CDS 27401583 27402164 27401583 ID=cds.MS.gene42396.t1;Parent=MS.gene42396.t1
chr7.1 exon 27402494 27402778 27402494 ID=MS.gene42396.t1.exon8;Parent=MS.gene42396.t1
chr7.1 CDS 27402494 27402778 27402494 ID=cds.MS.gene42396.t1;Parent=MS.gene42396.t1
Gene Sequence

>MS.gene42396

ATGCATACAATATATAGCCATTTTTTTACCCTATGTTGTTGGCTGTTGCAGGCTACCAAATGGAGAGAACAGAAGGCACTACACGACCTTAAATCTCTTTTTCCAAAAGAGGTAAGCACAAGCTGACATCACTCTTGTTTTGTCTTTCGTAATATTTTCATGCAAGAGTTATCCTCCCAACCTTCTAATCAATACCATATTGTAGGTTCTTGATGTTATTATGTCCAGCACGAATGATATGGGGCCTTTGAGTCTAGAAAATTTCCGAAATAATCTTTCTGCTTCTTGGAGAGTTGTTGGGTCAAAGACTTCAAACGCAACAAATCAGGTTAGGATTACTGATGTGCTTCTGCTTGAAAGTTTGATTTCCCCCCGAAAGGCATTATTGTCCTATTGCTACTGATTTTAATGTTTTTTAATTAAAGCTAAACAACCCAGAAACACATCTTAGACAAGAAGTTCAAAAGGAGAAGGAAGGAAGATCTTCAGGTTGTATCAGATACTATCAGTTAATATCCCCATGCTTTATTTTATTTCACCTTCTCATTAATTTTTCATTAATGCAGCAGGTCTTCCTCAGTGGACTGATAGTCCCGTAAGGCTAGCCAGAAGGGTGAGCATCATTCTTGGATATTTTTCTTTTTTCACTTAGCATTTTAGATACCATTAACTAAATTGTGTTTGTAGTGAAGAGTAATCTCCCATACCTTTTAATGTGGTGCTTGTGATAGTGACAAAAAAAAGCCTTATCATATACAAATAGCATGATATAATAATATAATTCTTAGCAGACCCCAACCTACAATAATAGTAGCCTTGATGAAGTATGATGTTCTGTTTGAAAATATTGTTTGACCTGTGGAGCGAGTTTTCTTTATTTAGTGAACAACAAATATATTCTTAAAGTAAACTTTGTTTTGCTCTTTTTTAATATCTTCTGCAGCAATTAATAGAGAAAAGGATCGCAAAGCGGGCTGCTGAGTTGGTACAACAGGATGATGAAGTTATTGTAAAACTTGAAGATTTAGCTATTGAACGTTCAAAATCAGTTGATTCAGCAGTTCTTGGTAAATACAACCTTTGGAGGAAAGAAAATGAAAATGAGAATGCTGATTCTACCGTTCGGTTGATGCGAGATCAGATCATTATGGCTAGGGTATACTTGAGTATTGCAAAGATGAAGAACAAGCTTGAATTGTACCAAGAACTGCAAACACGGCTTAAAGAGAGTCAGCGTGCTTTAGGTGAGGCAACTTCTGATGCTGACCTACACCAGAGGTATGCACAATTTTCTGAAGTGTATAAATATCTGCATCTGTTTGTATATACACTAACCTAATTAATTATCTTTAGTGAACATGAAAAAATCAAAGCAATGGGCCAAGTTCTTTCTAAGGCGAAAGATCAATTGTATGACTGCAAGTTGGTTATTGGGAAAGTAAGGGCAATGCTACAAACTGCTGATGAGCAGGTTAGAGGCTTGAAGAAACAAAGCACATTCCTTAGTCAGTTGGCTGCCAAGACCATACCAAATGGAATTCACTGCTTATCGATGCGCCTTACCATAGATTACTACCTCCTCCCACCTGAAAAGAGAAAGTTCCCTATGACTGAGAATTTGGTTAATCCCAGTCTTTATCATTATGCCCTATTCTCAGACAATGTTTTGGCTGCATCTGTTGTTGTCAACTCAACTGTTGTGAATGCAAAGGTAAAGAACTAACAGTCTTTTATGATACATGTGCGGGTGTGTATGTTTTTCAAGCACATTCCTTTTTAAAGATGATGGATTTGAGCTTGGATCCACGTGTTTTGCTTGCAACAGTCCATCTATTATTTGATAAATAATATTATTAAACCCAACCCTTCATTCATTAACTTATGTTGTTGTCTTTGACATTGCAGGATCCTTCAAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAATATGTGGTTTTTATTGAATCCTCCTGGTAAAGCTACAATCTATGTTGAAAATGTTGATGAATTTAAGTGGTTGAACTCATCTTACTGCCCAGTCTTGAGACAGCTTGAATCTGCGACAATGAAAGAGTATTATTTCAAGGCAGGCCACCCATCCACTACTGGTGCTTCTAATCTCAAATACAGAAATCCAAAGTATCTTTCAATGCTCAACCACCTGAGGTTCTATCTTCCACAAGTTTATCCGAAATTGGATAAGATTCTTTTTCTTGATGATGACATTGTTGTCCAGAAGGATTTGACTGGATTATGGAATGTGGATCTTCATGGAAAAGTTAACGGTGCAGTTGAAACATGTGGTGAGAGCTTTCACCGATTCGACAAATATCTTAACTTTTCAAATCCACATATTGCAAAAAACTTTGATCCCAATGCTTGTGGTTGGGCATACGGAATGAACATGTTTGATTTGAAGGTGTGGAAAAAGAAGGACATTACTGGCATATATCACAGGTGGCAGAATTTGGTGAGCAAATTGAACATAACATCGGTTTACATCATGTTTCTATTCTCGGAATTGGATTCTCTGCAACCACATAGTACTGCACGCAACCACGAATCTCGAATCTCGGCTGTTGGATATCAGATGACTCTTATTCCAATTTCTATTTTAAAACTAATTTGAAGAAGTCAGAATGTGAGCCGTCTGATCCTCAGCCAACAGTCTAGATTCCTCGGTTGCAGGACTGTGTGCTTGCCCTAACTGTAGGGAATCATGCTCTGTCTATCTTCACATAAATAGACAAAACAAATGTGATCTTTCACTGACCATTTTTTTTTCATGTTTGATTTCAGAATGAAGACAGGGTACTATGGAAATTAGGGACATTACCTCCAGGGCTAATGACATTCTATGGATTAACACATCCGCTAAATAAATCATGGCATGTACTCGGTTTGGGTTACAGTCCAAGTATAGATCGTACGGAGATTGAGAATGCAGCAGTTGTACACTACAATGGTAATATGAAGCCATGGTTAGAGATAGCAATGACAAAGTATCGTCCTTACTGGACCAAATATGTCAAGTATAACCATCCTTATCTTAGGAACTGTAAGCTAAGTGAATGGTCTGGATAA
Protein sequence

>MS.gene42396.t1

MHTIYSHFFTLCCWLLQATKWREQKALHDLKSLFPKEVLDVIMSSTNDMGPLSLENFRNNLSASWRVVGSKTSNATNQLNNPETHLRQEVQKEKEGRSSAGLPQWTDSPVRLARRQLIEKRIAKRAAELVQQDDEVIVKLEDLAIERSKSVDSAVLGKYNLWRKENENENADSTVRLMRDQIIMARVYLSIAKMKNKLELYQELQTRLKESQRALGEATSDADLHQSEHEKIKAMGQVLSKAKDQLYDCKLVIGKVRAMLQTADEQVRGLKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLPPEKRKFPMTENLVNPSLYHYALFSDNVLAASVVVNSTVVNAKDPSKHVFHLVTDKLNFGAMNMWFLLNPPGKATIYVENVDEFKWLNSSYCPVLRQLESATMKEYYFKAGHPSTTGASNLKYRNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTGLWNVDLHGKVNGAVETCGESFHRFDKYLNFSNPHIAKNFDPNACGWAYGMNMFDLKVWKKKDITGIYHRWQNLNEDRVLWKLGTLPPGLMTFYGLTHPLNKSWHVLGLGYSPSIDRTEIENAAVVHYNGNMKPWLEIAMTKYRPYWTKYVKYNHPYLRNCKLSEWSG