Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42416.t1 | KEH23342.1 | 99.4 | 170 | 1 | 0 | 1 | 170 | 1 | 170 | 5.50E-96 | 360.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42416.t1 | P37225 | 83.1 | 172 | 27 | 1 | 1 | 170 | 1 | 172 | 9.3e-84 | 310.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42416.t1 | G7L3I1 | 99.4 | 170 | 1 | 0 | 1 | 170 | 1 | 170 | 4.0e-96 | 360.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055729 | MS.gene42416 | 0.813016 | 3.17E-51 | -1.69E-46 |
MS.gene055730 | MS.gene42416 | 0.822502 | 2.29E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42416.t1 | MTR_7g076650 | 99.412 | 170 | 1 | 0 | 1 | 170 | 1 | 170 | 4.21e-126 | 364 |
MS.gene42416.t1 | MTR_7g076650 | 99.412 | 170 | 1 | 0 | 1 | 170 | 1 | 170 | 3.04e-125 | 365 |
MS.gene42416.t1 | MTR_7g076650 | 99.412 | 170 | 1 | 0 | 1 | 170 | 1 | 170 | 8.81e-125 | 365 |
MS.gene42416.t1 | MTR_8g032040 | 83.237 | 173 | 26 | 1 | 1 | 170 | 1 | 173 | 1.47e-106 | 317 |
MS.gene42416.t1 | MTR_8g009500 | 67.568 | 148 | 48 | 0 | 23 | 170 | 44 | 191 | 1.17e-71 | 224 |
MS.gene42416.t1 | MTR_8g009500 | 67.568 | 148 | 48 | 0 | 23 | 170 | 44 | 191 | 8.87e-71 | 225 |
MS.gene42416.t1 | MTR_8g009500 | 80.769 | 78 | 15 | 0 | 93 | 170 | 20 | 97 | 1.13e-43 | 151 |
MS.gene42416.t1 | MTR_3g110330 | 41.606 | 137 | 70 | 1 | 30 | 166 | 39 | 165 | 1.14e-33 | 125 |
MS.gene42416.t1 | MTR_8g102620 | 43.066 | 137 | 68 | 1 | 30 | 166 | 52 | 178 | 1.01e-32 | 122 |
MS.gene42416.t1 | MTR_8g014390 | 39.007 | 141 | 76 | 1 | 30 | 170 | 49 | 179 | 1.25e-30 | 116 |
MS.gene42416.t1 | MTR_2g101040 | 39.007 | 141 | 76 | 1 | 30 | 170 | 102 | 232 | 4.02e-29 | 112 |
MS.gene42416.t1 | MTR_2g101040 | 39.007 | 141 | 76 | 1 | 30 | 170 | 136 | 266 | 4.75e-29 | 112 |
MS.gene42416.t1 | MTR_2g101040 | 39.007 | 141 | 76 | 1 | 30 | 170 | 102 | 232 | 4.96e-29 | 112 |
MS.gene42416.t1 | MTR_2g101040 | 39.007 | 141 | 76 | 1 | 30 | 170 | 102 | 232 | 5.74e-29 | 112 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42416.t1 | AT4G00570 | 82.803 | 157 | 27 | 0 | 14 | 170 | 23 | 179 | 8.10e-98 | 295 |
MS.gene42416.t1 | AT2G13560 | 62.651 | 166 | 61 | 1 | 6 | 170 | 21 | 186 | 1.04e-71 | 227 |
MS.gene42416.t1 | AT2G19900 | 40.876 | 137 | 71 | 1 | 30 | 166 | 42 | 168 | 5.56e-32 | 120 |
MS.gene42416.t1 | AT5G25880 | 40.146 | 137 | 72 | 1 | 30 | 166 | 49 | 175 | 1.37e-31 | 119 |
MS.gene42416.t1 | AT5G25880 | 40.146 | 137 | 72 | 1 | 30 | 166 | 49 | 175 | 1.64e-31 | 119 |
MS.gene42416.t1 | AT5G25880 | 40.146 | 137 | 72 | 1 | 30 | 166 | 49 | 175 | 3.91e-30 | 115 |
MS.gene42416.t1 | AT5G11670 | 39.416 | 137 | 73 | 1 | 30 | 166 | 49 | 175 | 6.04e-29 | 112 |
MS.gene42416.t1 | AT1G79750 | 39.007 | 141 | 76 | 1 | 30 | 170 | 107 | 237 | 6.07e-29 | 112 |
MS.gene42416.t1 | AT2G19900 | 50.746 | 67 | 33 | 0 | 100 | 166 | 3 | 69 | 1.90e-21 | 90.5 |
Find 46 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTCGTATCATTTCATTTC+AGG | 0.152277 | 7.2:-87368713 | MS.gene42416:CDS |
AAACGATCCCTTTCAGTTAA+AGG | 0.185284 | 7.2:+87368757 | None:intergenic |
TCATGATCCTTGGTTCAATA+AGG | 0.276524 | 7.2:-87369615 | MS.gene42416:intron |
CATCATCTCTCCTTTATCTT+TGG | 0.282849 | 7.2:+87368188 | None:intergenic |
CTGATATTCTTCATGATCCT+TGG | 0.337382 | 7.2:-87369625 | MS.gene42416:CDS |
TCTATTTAAGATCCTCCATT+TGG | 0.349893 | 7.2:+87368454 | None:intergenic |
TTTAACTGAAAGGGATCGTT+TGG | 0.353746 | 7.2:-87368755 | MS.gene42416:CDS |
ACTGTAGGAGTGTAAATTAT+TGG | 0.368268 | 7.2:+87368273 | None:intergenic |
AAAACTATTGTGGGTTGTAT+AGG | 0.378512 | 7.2:-87368236 | MS.gene42416:CDS |
TTATAACTGGCCAGCTCCTC+AGG | 0.382199 | 7.2:-87368157 | MS.gene42416:CDS |
TAAGATCCTCCATTTGGATA+AGG | 0.396615 | 7.2:+87368460 | None:intergenic |
CGGATTTCCTTTAACTGAAA+GGG | 0.420020 | 7.2:-87368764 | MS.gene42416:CDS |
TGATGTCGATGATTTATAAC+TGG | 0.420109 | 7.2:-87368170 | MS.gene42416:CDS |
GGCGATACCTGCTCCGTGTA+TGG | 0.423282 | 7.2:-87369663 | MS.gene42416:CDS |
TTAACTGAAAGGGATCGTTT+GGG | 0.440854 | 7.2:-87368754 | MS.gene42416:CDS |
AAATTGTTTCCTTATCCAAA+TGG | 0.443400 | 7.2:-87368469 | MS.gene42416:CDS |
CCTTTCAGTTAAAGGAAATC+CGG | 0.475100 | 7.2:+87368765 | None:intergenic |
AGTGAGCTCATATAGATCAT+TGG | 0.482376 | 7.2:-87368519 | MS.gene42416:CDS |
CCGGATTTCCTTTAACTGAA+AGG | 0.492100 | 7.2:-87368765 | MS.gene42416:CDS |
CAATTCATTACCTGAGGAGC+TGG | 0.495881 | 7.2:+87368147 | None:intergenic |
TAATTTACACTCCTACAGTT+GGG | 0.496930 | 7.2:-87368269 | MS.gene42416:CDS |
ATAATTTACACTCCTACAGT+TGG | 0.500644 | 7.2:-87368270 | MS.gene42416:CDS |
AGGGATCGTTTGGGGCTTCG+AGG | 0.509582 | 7.2:-87368745 | MS.gene42416:CDS |
TAGTGTGTCAAAACTATTGT+GGG | 0.517809 | 7.2:-87368245 | MS.gene42416:CDS |
ATTCTCGAAATGTAGGATAC+CGG | 0.537469 | 7.2:-87368784 | MS.gene42416:intron |
ATGAAATGATACGAGGAGGA+AGG | 0.570448 | 7.2:+87368719 | None:intergenic |
TTATGAACCATACACGGAGC+AGG | 0.578199 | 7.2:+87369656 | None:intergenic |
TTGTTTCCTTATCCAAATGG+AGG | 0.585354 | 7.2:-87368466 | MS.gene42416:CDS |
GCGATCGCGGTTGTTCTCGA+CGG | 0.600148 | 7.2:-87369684 | MS.gene42416:CDS |
TGGCTGCATCATCGCGATCG+CGG | 0.605590 | 7.2:-87369697 | MS.gene42416:CDS |
TAACTGAAAGGGATCGTTTG+GGG | 0.609536 | 7.2:-87368753 | MS.gene42416:CDS |
TCTTAAATAGACTACATGAC+AGG | 0.611160 | 7.2:-87368442 | MS.gene42416:CDS |
CAAGATCAATTCATTACCTG+AGG | 0.613037 | 7.2:+87368141 | None:intergenic |
TGACACACTAACCCAACTGT+AGG | 0.613154 | 7.2:+87368258 | None:intergenic |
TTGATTTGGAAGAATGTGGA+AGG | 0.621516 | 7.2:-87369729 | None:intergenic |
AAATGATACGAGGAGGAAGG+AGG | 0.624874 | 7.2:+87368722 | None:intergenic |
TTAGTGTGTCAAAACTATTG+TGG | 0.625148 | 7.2:-87368246 | MS.gene42416:CDS |
AATGTGGAAGGTGACGCGTT+TGG | 0.629005 | 7.2:-87369717 | MS.gene42416:CDS |
TGATGAACCTTATTGAACCA+AGG | 0.639671 | 7.2:+87369608 | None:intergenic |
CCACGTTTATGAACCATACA+CGG | 0.649265 | 7.2:+87369650 | None:intergenic |
CCGTGTATGGTTCATAAACG+TGG | 0.657511 | 7.2:-87369650 | MS.gene42416:CDS |
TGAAATGAAATGATACGAGG+AGG | 0.663233 | 7.2:+87368715 | None:intergenic |
TCATTGGAGAAGAATACCCA+TGG | 0.676024 | 7.2:-87368503 | MS.gene42416:CDS |
GGGTTGTATAGGCGTCCACG+TGG | 0.704315 | 7.2:-87368225 | MS.gene42416:CDS |
GCACTAAAATACATTCCACG+TGG | 0.711731 | 7.2:+87368210 | None:intergenic |
TCCTGAAATGAAATGATACG+AGG | 0.716494 | 7.2:+87368712 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAAAAATAAAATCAGTTA+TGG | - | chr7.2:87368552-87368571 | MS.gene42416:intron | 10.0% |
!!! | ATAATAATTTATTTTCATAG+TGG | + | chr7.2:87368533-87368552 | None:intergenic | 10.0% |
!!! | TTAAAAAAATGATGTTTTTA+TGG | - | chr7.2:87368680-87368699 | MS.gene42416:intron | 10.0% |
!! | AAAAAAAAAGCTATAACAAA+TGG | - | chr7.2:87368707-87368726 | MS.gene42416:CDS | 15.0% |
!! | AAAAAAAAGCTATAACAAAT+GGG | - | chr7.2:87368708-87368727 | MS.gene42416:CDS | 15.0% |
!! | AAAAAAAGCTATAACAAATG+GGG | - | chr7.2:87368709-87368728 | MS.gene42416:CDS | 20.0% |
!! | TTGTAACATTTATTTCCAAA+TGG | - | chr7.2:87369505-87369524 | MS.gene42416:intron | 20.0% |
!!! | AAATGTAGTAGTTATTTTGA+AGG | - | chr7.2:87368428-87368447 | MS.gene42416:CDS | 20.0% |
!!! | ATCACAAAATCATCAAATTT+TGG | + | chr7.2:87368793-87368812 | None:intergenic | 20.0% |
!!! | TCACAAAATCATCAAATTTT+GGG | + | chr7.2:87368792-87368811 | None:intergenic | 20.0% |
! | AAATTGTTTCCTTATCCAAA+TGG | - | chr7.2:87369393-87369412 | MS.gene42416:intron | 25.0% |
! | AATGAACCTTAACTAATTTG+AGG | + | chr7.2:87368916-87368935 | None:intergenic | 25.0% |
! | CAGTATTAAATCAAAACCAA+TGG | + | chr7.2:87369027-87369046 | None:intergenic | 25.0% |
!! | TTTTTGAATTCTCGAAATGT+AGG | - | chr7.2:87369071-87369090 | MS.gene42416:intron | 25.0% |
!!! | TATTTTAGTGCCAAAGATAA+AGG | - | chr7.2:87369664-87369683 | MS.gene42416:CDS | 25.0% |
!!! | TTATGGAAAAAGTGTTTTTC+TGG | - | chr7.2:87368569-87368588 | MS.gene42416:intron | 25.0% |
AACTCACCTCAAATTAGTTA+AGG | - | chr7.2:87368907-87368926 | MS.gene42416:intron | 30.0% | |
ACTATATGCATCTATGTTCT+TGG | - | chr7.2:87369216-87369235 | MS.gene42416:intron | 30.0% | |
ATAATTTACACTCCTACAGT+TGG | - | chr7.2:87369592-87369611 | MS.gene42416:intron | 30.0% | |
CGAAGATAGAAACATAGTAA+TGG | + | chr7.2:87368308-87368327 | None:intergenic | 30.0% | |
GTAACAACATAAGAACCATT+TGG | + | chr7.2:87369523-87369542 | None:intergenic | 30.0% | |
TAATTTACACTCCTACAGTT+GGG | - | chr7.2:87369593-87369612 | MS.gene42416:intron | 30.0% | |
TAGTGTGTCAAAACTATTGT+GGG | - | chr7.2:87369617-87369636 | MS.gene42416:CDS | 30.0% | |
TCTTAAATAGACTACATGAC+AGG | - | chr7.2:87369420-87369439 | MS.gene42416:intron | 30.0% | |
TGATGTCGATGATTTATAAC+TGG | - | chr7.2:87369692-87369711 | MS.gene42416:CDS | 30.0% | |
TTAGTGTGTCAAAACTATTG+TGG | - | chr7.2:87369616-87369635 | MS.gene42416:CDS | 30.0% | |
! | AAAACTATTGTGGGTTGTAT+AGG | - | chr7.2:87369626-87369645 | MS.gene42416:CDS | 30.0% |
! | AATTTTATCTGACTGACCAT+GGG | + | chr7.2:87369378-87369397 | None:intergenic | 30.0% |
! | ACTGTAGGAGTGTAAATTAT+TGG | + | chr7.2:87369592-87369611 | None:intergenic | 30.0% |
! | TCTATTTAAGATCCTCCATT+TGG | + | chr7.2:87369411-87369430 | None:intergenic | 30.0% |
! | TTAAGGTTCATTGTCATTTC+TGG | - | chr7.2:87368924-87368943 | MS.gene42416:intron | 30.0% |
AAACGATCCCTTTCAGTTAA+AGG | + | chr7.2:87369108-87369127 | None:intergenic | 35.0% | |
AATGATCTATATGAGCTCAC+TGG | + | chr7.2:87369344-87369363 | None:intergenic | 35.0% | |
AGTGAGCTCATATAGATCAT+TGG | - | chr7.2:87369343-87369362 | MS.gene42416:intron | 35.0% | |
ATGCATGAGAAAATAGACAC+TGG | - | chr7.2:87368855-87368874 | MS.gene42416:intron | 35.0% | |
ATTCTCGAAATGTAGGATAC+CGG | - | chr7.2:87369078-87369097 | MS.gene42416:intron | 35.0% | |
CAAAACCAATGGTTAAGAAC+AGG | + | chr7.2:87369016-87369035 | None:intergenic | 35.0% | |
CAGAAACTTGAAATTCTACG+CGG | + | chr7.2:87368990-87369009 | None:intergenic | 35.0% | |
CATCATCTCTCCTTTATCTT+TGG | + | chr7.2:87369677-87369696 | None:intergenic | 35.0% | |
CCTTTCAGTTAAAGGAAATC+CGG | + | chr7.2:87369100-87369119 | None:intergenic | 35.0% | |
CGGATTTCCTTTAACTGAAA+GGG | - | chr7.2:87369098-87369117 | MS.gene42416:intron | 35.0% | |
CTGATATTCTTCATGATCCT+TGG | - | chr7.2:87368237-87368256 | MS.gene42416:CDS | 35.0% | |
TAAGATCCTCCATTTGGATA+AGG | + | chr7.2:87369405-87369424 | None:intergenic | 35.0% | |
TATCTAAATCCTCAGTATCC+AGG | + | chr7.2:87368951-87368970 | None:intergenic | 35.0% | |
TCATGATCCTTGGTTCAATA+AGG | - | chr7.2:87368247-87368266 | MS.gene42416:CDS | 35.0% | |
TCCTCGTATCATTTCATTTC+AGG | - | chr7.2:87369149-87369168 | MS.gene42416:intron | 35.0% | |
TCCTGAAATGAAATGATACG+AGG | + | chr7.2:87369153-87369172 | None:intergenic | 35.0% | |
TGAAATGAAATGATACGAGG+AGG | + | chr7.2:87369150-87369169 | None:intergenic | 35.0% | |
TGATGAACCTTATTGAACCA+AGG | + | chr7.2:87368257-87368276 | None:intergenic | 35.0% | |
TGCATGAGAAAATAGACACT+GGG | - | chr7.2:87368856-87368875 | MS.gene42416:intron | 35.0% | |
TGTTACCTTTCATTCTCTTC+AGG | - | chr7.2:87369537-87369556 | MS.gene42416:intron | 35.0% | |
TTAACTGAAAGGGATCGTTT+GGG | - | chr7.2:87369108-87369127 | MS.gene42416:intron | 35.0% | |
TTGTTTCCTTATCCAAATGG+AGG | - | chr7.2:87369396-87369415 | MS.gene42416:intron | 35.0% | |
TTTAACTGAAAGGGATCGTT+TGG | - | chr7.2:87369107-87369126 | MS.gene42416:intron | 35.0% | |
! | CAATTTTATCTGACTGACCA+TGG | + | chr7.2:87369379-87369398 | None:intergenic | 35.0% |
! | CTAATTTGAGGTGAGTTGAA+TGG | + | chr7.2:87368904-87368923 | None:intergenic | 35.0% |
! | GTGAGTCTGATGATGAAATT+AGG | - | chr7.2:87369464-87369483 | MS.gene42416:intron | 35.0% |
AAGTGCCTGAAGAGAATGAA+AGG | + | chr7.2:87369545-87369564 | None:intergenic | 40.0% | |
ATGAAATGATACGAGGAGGA+AGG | + | chr7.2:87369146-87369165 | None:intergenic | 40.0% | |
CCACGTTTATGAACCATACA+CGG | + | chr7.2:87368215-87368234 | None:intergenic | 40.0% | |
CCGGATTTCCTTTAACTGAA+AGG | - | chr7.2:87369097-87369116 | MS.gene42416:intron | 40.0% | |
GCACTAAAATACATTCCACG+TGG | + | chr7.2:87369655-87369674 | None:intergenic | 40.0% | |
TAACTGAAAGGGATCGTTTG+GGG | - | chr7.2:87369109-87369128 | MS.gene42416:intron | 40.0% | |
TCATTGGAGAAGAATACCCA+TGG | - | chr7.2:87369359-87369378 | MS.gene42416:intron | 40.0% | |
TGATGCCTGTTCTTAACCAT+TGG | - | chr7.2:87369008-87369027 | MS.gene42416:intron | 40.0% | |
!! | TTCATTGTCATTTCTGGTCC+TGG | - | chr7.2:87368930-87368949 | MS.gene42416:intron | 40.0% |
AAATGATACGAGGAGGAAGG+AGG | + | chr7.2:87369143-87369162 | None:intergenic | 45.0% | |
CAATTCATTACCTGAGGAGC+TGG | + | chr7.2:87369718-87369737 | None:intergenic | 45.0% | |
CCGTGTATGGTTCATAAACG+TGG | - | chr7.2:87368212-87368231 | MS.gene42416:CDS | 45.0% | |
TGACACACTAACCCAACTGT+AGG | + | chr7.2:87369607-87369626 | None:intergenic | 45.0% | |
TTATGAACCATACACGGAGC+AGG | + | chr7.2:87368209-87368228 | None:intergenic | 45.0% | |
!! | ATTTCTGGTCCTGGATACTG+AGG | - | chr7.2:87368939-87368958 | MS.gene42416:intron | 45.0% |
!! | ATTAAAATAATAATATGTTA+TGG | + | chr7.2:87369318-87369337 | None:intergenic | 5.0% |
TTATAACTGGCCAGCTCCTC+AGG | - | chr7.2:87369705-87369724 | MS.gene42416:CDS | 50.0% | |
GCGATCGCGGTTGTTCTCGA+CGG | - | chr7.2:87368178-87368197 | MS.gene42416:CDS | 60.0% | |
GGCGATACCTGCTCCGTGTA+TGG | - | chr7.2:87368199-87368218 | MS.gene42416:CDS | 60.0% | |
GGGTTGTATAGGCGTCCACG+TGG | - | chr7.2:87369637-87369656 | MS.gene42416:CDS | 60.0% | |
TGGCTGCATCATCGCGATCG+CGG | - | chr7.2:87368165-87368184 | MS.gene42416:CDS | 60.0% | |
! | AGGGATCGTTTGGGGCTTCG+AGG | - | chr7.2:87369117-87369136 | MS.gene42416:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 87368146 | 87369738 | 87368146 | ID=MS.gene42416 |
chr7.2 | mRNA | 87368146 | 87369738 | 87368146 | ID=MS.gene42416.t1;Parent=MS.gene42416 |
chr7.2 | exon | 87369616 | 87369738 | 87369616 | ID=MS.gene42416.t1.exon1;Parent=MS.gene42416.t1 |
chr7.2 | CDS | 87369616 | 87369738 | 87369616 | ID=cds.MS.gene42416.t1;Parent=MS.gene42416.t1 |
chr7.2 | exon | 87368695 | 87368791 | 87368695 | ID=MS.gene42416.t1.exon2;Parent=MS.gene42416.t1 |
chr7.2 | CDS | 87368695 | 87368791 | 87368695 | ID=cds.MS.gene42416.t1;Parent=MS.gene42416.t1 |
chr7.2 | exon | 87368421 | 87368539 | 87368421 | ID=MS.gene42416.t1.exon3;Parent=MS.gene42416.t1 |
chr7.2 | CDS | 87368421 | 87368539 | 87368421 | ID=cds.MS.gene42416.t1;Parent=MS.gene42416.t1 |
chr7.2 | exon | 87368146 | 87368325 | 87368146 | ID=MS.gene42416.t1.exon4;Parent=MS.gene42416.t1 |
chr7.2 | CDS | 87368146 | 87368325 | 87368146 | ID=cds.MS.gene42416.t1;Parent=MS.gene42416.t1 |
Gene Sequence |
Protein sequence |