Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42635.t1 | XP_003603211.1 | 96.1 | 229 | 7 | 1 | 1 | 227 | 1 | 229 | 2.40E-123 | 451.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42635.t1 | G7J8F5 | 96.1 | 229 | 7 | 1 | 1 | 227 | 1 | 229 | 1.7e-123 | 451.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057669 | MS.gene42635 | 0.802575 | 5.26E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42635.t1 | MTR_3g105080 | 96.070 | 229 | 7 | 1 | 1 | 227 | 1 | 229 | 2.29e-164 | 452 |
| MS.gene42635.t1 | MTR_8g009260 | 45.026 | 191 | 103 | 2 | 32 | 221 | 30 | 219 | 3.46e-54 | 173 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42635.t1 | AT1G02180 | 44.000 | 175 | 92 | 6 | 32 | 203 | 29 | 200 | 3.73e-43 | 145 |
Find 60 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGGGTCTCCTTATTTC+TGG | 0.118257 | 3.4:+91995331 | MS.gene42635:CDS |
| TTCATCCTTTCCTTCCTTCT+TGG | 0.129768 | 3.4:+91992989 | MS.gene42635:CDS |
| TCGTATAACTGGTCGTTTCT+TGG | 0.250063 | 3.4:+91995182 | MS.gene42635:CDS |
| GCTTCAGCAAATTGAGATTC+AGG | 0.261524 | 3.4:-91995120 | None:intergenic |
| AGCTCTTCTCGTTTCTTATC+AGG | 0.274033 | 3.4:-91995251 | None:intergenic |
| CGTATAACTGGTCGTTTCTT+GGG | 0.276791 | 3.4:+91995183 | MS.gene42635:CDS |
| ATGCCTTAACACCACAGTTT+GGG | 0.323486 | 3.4:-91995149 | None:intergenic |
| AACAACACACACCAGAAATA+AGG | 0.333485 | 3.4:-91995342 | None:intergenic |
| GATGCCTTAACACCACAGTT+TGG | 0.357391 | 3.4:-91995150 | None:intergenic |
| TCAACTCTTGCTCGTATAAC+TGG | 0.364017 | 3.4:+91995171 | MS.gene42635:CDS |
| TCAAAAGTAAATGTGCTGTT+AGG | 0.374585 | 3.4:-91995378 | None:intergenic |
| TGCCCCAAACTGTGGTGTTA+AGG | 0.376413 | 3.4:+91995146 | MS.gene42635:CDS |
| GCTTCAGTTTCAATTGCAAT+GGG | 0.382192 | 3.4:+91995507 | MS.gene42635:CDS |
| CAAGTTGGTGCTGCTGTAAC+CGG | 0.391700 | 3.4:+91995303 | MS.gene42635:CDS |
| TTCCTTCTTGGTGCTTCTAC+CGG | 0.398930 | 3.4:+91993001 | MS.gene42635:CDS |
| ACAAAACCAGGTTGCTATAG+TGG | 0.403030 | 3.4:+91995420 | MS.gene42635:CDS |
| TGCTTCAGTTTCAATTGCAA+TGG | 0.413253 | 3.4:+91995506 | MS.gene42635:CDS |
| TCTCGCCCTACAGTACATTA+AGG | 0.413855 | 3.4:+91995047 | MS.gene42635:CDS |
| TCATCTTTATTTGACAATCC+CGG | 0.454811 | 3.4:+91995015 | MS.gene42635:CDS |
| TGTGCAGTGGTGCTCATGTT+TGG | 0.457962 | 3.4:+91995454 | MS.gene42635:CDS |
| TAGGGCGAGACATGCGAGCC+CGG | 0.474850 | 3.4:-91995034 | None:intergenic |
| GCAGCTACTAACTTGTCTGC+AGG | 0.476484 | 3.4:-91994961 | None:intergenic |
| CATCTTTATTTGACAATCCC+GGG | 0.500468 | 3.4:+91995016 | MS.gene42635:CDS |
| TGGTGTGTGTTGTTTAGTAA+TGG | 0.500489 | 3.4:+91995351 | MS.gene42635:CDS |
| GGTGATTGTGGTGCTGTGGG+TGG | 0.502206 | 3.4:+91995078 | MS.gene42635:CDS |
| GGTATGCCTTAATGTACTGT+AGG | 0.503759 | 3.4:-91995053 | None:intergenic |
| CAGGGTGATTGTGGTGCTGT+GGG | 0.510763 | 3.4:+91995075 | MS.gene42635:CDS |
| CTTCAGCAAATTGAGATTCA+GGG | 0.511447 | 3.4:-91995119 | None:intergenic |
| CGAAAACAGAACTGCTCACA+AGG | 0.516931 | 3.4:+91994990 | MS.gene42635:CDS |
| GTGCATGGACATACTTAGTC+TGG | 0.524594 | 3.4:-91995209 | None:intergenic |
| GTATAACTGGTCGTTTCTTG+GGG | 0.529253 | 3.4:+91995184 | MS.gene42635:CDS |
| CCAGGGTGATTGTGGTGCTG+TGG | 0.539111 | 3.4:+91995074 | MS.gene42635:CDS |
| AATAGCCACATCACACTGAC+TGG | 0.539928 | 3.4:-91995480 | None:intergenic |
| AAGGCATACCAGGGTGATTG+TGG | 0.548506 | 3.4:+91995066 | MS.gene42635:CDS |
| ACAGTACATTAAGGCATACC+AGG | 0.557681 | 3.4:+91995056 | MS.gene42635:CDS |
| CAGAAAACGCCTCAGGTGCA+TGG | 0.559426 | 3.4:-91995224 | None:intergenic |
| GCTGCTGTAACCGGTACTGA+TGG | 0.569000 | 3.4:+91995312 | MS.gene42635:CDS |
| AGTAAGAATCACACTCAAGT+TGG | 0.576187 | 3.4:+91995288 | MS.gene42635:CDS |
| AAGCACCAAGAAGGAAGGAA+AGG | 0.578158 | 3.4:-91992994 | None:intergenic |
| AGGGCGAGACATGCGAGCCC+GGG | 0.579446 | 3.4:-91995033 | None:intergenic |
| TGCCTTAACACCACAGTTTG+GGG | 0.580489 | 3.4:-91995148 | None:intergenic |
| CACCGGTAGAAGCACCAAGA+AGG | 0.580761 | 3.4:-91993003 | None:intergenic |
| GCTGTAACCGGTACTGATGG+AGG | 0.581331 | 3.4:+91995315 | MS.gene42635:CDS |
| AGGATTTCAGAAAACGCCTC+AGG | 0.582162 | 3.4:-91995231 | None:intergenic |
| GGTAGAAGCACCAAGAAGGA+AGG | 0.585888 | 3.4:-91992999 | None:intergenic |
| AGGAGACCCTCCATCAGTAC+CGG | 0.597918 | 3.4:-91995322 | None:intergenic |
| GTATGCCTTAATGTACTGTA+GGG | 0.599616 | 3.4:-91995052 | None:intergenic |
| TTCAGCAAATTGAGATTCAG+GGG | 0.606803 | 3.4:-91995118 | None:intergenic |
| AGACTTACTTTGAGTAGCAC+CGG | 0.607278 | 3.4:-91993020 | None:intergenic |
| GGTCACCAGTCAGTGTGATG+TGG | 0.613666 | 3.4:+91995475 | MS.gene42635:CDS |
| CAGCTACTAACTTGTCTGCA+GGG | 0.614123 | 3.4:-91994960 | None:intergenic |
| CTTCAGTTTCAATTGCAATG+GGG | 0.618866 | 3.4:+91995508 | MS.gene42635:CDS |
| CTGTAACCGGTACTGATGGA+GGG | 0.623210 | 3.4:+91995316 | MS.gene42635:CDS |
| TTAGCTCCACTATAGCAACC+TGG | 0.653166 | 3.4:-91995426 | None:intergenic |
| TCAGCAAATTGAGATTCAGG+GGG | 0.657704 | 3.4:-91995117 | None:intergenic |
| CCACAGCACCACAATCACCC+TGG | 0.672377 | 3.4:-91995074 | None:intergenic |
| GTGGCTAAAGAAACAAAACC+AGG | 0.685787 | 3.4:+91995408 | MS.gene42635:CDS |
| TAAGTATGTCCATGCACCTG+AGG | 0.686474 | 3.4:+91995215 | MS.gene42635:CDS |
| CAGTACATTAAGGCATACCA+GGG | 0.710618 | 3.4:+91995057 | MS.gene42635:CDS |
| GGAGCTAATGATGTGTGCAG+TGG | 0.715652 | 3.4:+91995441 | MS.gene42635:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCATTGATTATATATA+TGG | + | chr3.4:91994714-91994733 | MS.gene42635:intron | 10.0% |
| !! | AGAAAATAAATATAACTATG+AGG | - | chr3.4:91994830-91994849 | None:intergenic | 15.0% |
| !! | TTATAACTCATTAAAGTTTA+TGG | + | chr3.4:91993425-91993444 | MS.gene42635:intron | 15.0% |
| !!! | TTTATTTTATATCTCAGATT+TGG | + | chr3.4:91993059-91993078 | MS.gene42635:intron | 15.0% |
| !! | AAAAAAATTGAACTGTTATG+TGG | + | chr3.4:91993976-91993995 | MS.gene42635:intron | 20.0% |
| !! | AAATATGTAACCTTAATCAA+AGG | - | chr3.4:91994690-91994709 | None:intergenic | 20.0% |
| !! | AACAACTATTTACTAACATT+TGG | + | chr3.4:91993677-91993696 | MS.gene42635:intron | 20.0% |
| !! | AATAAATATAACTATGAGGT+AGG | - | chr3.4:91994826-91994845 | None:intergenic | 20.0% |
| !! | ATAAATATAACTATGAGGTA+GGG | - | chr3.4:91994825-91994844 | None:intergenic | 20.0% |
| !! | CATTAAAAAAAATTGGTTGT+AGG | + | chr3.4:91993700-91993719 | MS.gene42635:intron | 20.0% |
| !! | CATTTGGCATTAAAAAAAAT+TGG | + | chr3.4:91993693-91993712 | MS.gene42635:intron | 20.0% |
| !! | GACAATATAAAATGAAATCA+AGG | - | chr3.4:91993795-91993814 | None:intergenic | 20.0% |
| ! | AACCTTAATCAAAGGATAAA+AGG | - | chr3.4:91994682-91994701 | None:intergenic | 25.0% |
| ! | AGACAAACTATAACAAATGT+TGG | - | chr3.4:91994434-91994453 | None:intergenic | 25.0% |
| ! | CTTAAACAATAAGCATCAAA+CGG | - | chr3.4:91993875-91993894 | None:intergenic | 25.0% |
| ! | CTTTCAACAAAATTAATCCA+GGG | - | chr3.4:91993916-91993935 | None:intergenic | 25.0% |
| ! | TAATCAAAGGATAAAAGGAA+AGG | - | chr3.4:91994677-91994696 | None:intergenic | 25.0% |
| ! | TATGTTAGTTAGTCACAAAT+TGG | + | chr3.4:91993543-91993562 | MS.gene42635:intron | 25.0% |
| ! | TCTTGCAAGTTGTATTAAAA+TGG | + | chr3.4:91993269-91993288 | MS.gene42635:intron | 25.0% |
| ! | TCTTTCAACAAAATTAATCC+AGG | - | chr3.4:91993917-91993936 | None:intergenic | 25.0% |
| ! | TGAAATTAGGACTAAACTTA+TGG | + | chr3.4:91994119-91994138 | MS.gene42635:intron | 25.0% |
| ! | TTAAACAATAAGCATCAAAC+GGG | - | chr3.4:91993874-91993893 | None:intergenic | 25.0% |
| ! | TTGTTTAAGAGCTAATTATG+TGG | + | chr3.4:91993886-91993905 | MS.gene42635:intron | 25.0% |
| ! | TTTCAACAAAATTAATCCAG+GGG | - | chr3.4:91993915-91993934 | None:intergenic | 25.0% |
| !! | ATGACTTTTGTAGTGAAATT+AGG | + | chr3.4:91994106-91994125 | MS.gene42635:intron | 25.0% |
| !! | ATTTGGAACTTTCACTATAA+TGG | + | chr3.4:91993318-91993337 | MS.gene42635:intron | 25.0% |
| !! | TTCCTTTTATCCTTTGATTA+AGG | + | chr3.4:91994677-91994696 | MS.gene42635:intron | 25.0% |
| !!! | ACATTTGTTATAGTTTGTCT+AGG | + | chr3.4:91994434-91994453 | MS.gene42635:intron | 25.0% |
| !!! | TGAATATCTAGCTTTCATTA+TGG | + | chr3.4:91994249-91994268 | MS.gene42635:intron | 25.0% |
| AAACTTATGGAAGCCTTAAA+TGG | + | chr3.4:91994132-91994151 | MS.gene42635:intron | 30.0% | |
| AAGATAAATAAAACCGTTGC+TGG | + | chr3.4:91994344-91994363 | MS.gene42635:intron | 30.0% | |
| AATTGAACTGTTATGTGGTT+AGG | + | chr3.4:91993981-91994000 | MS.gene42635:intron | 30.0% | |
| AATTTAGAGAACACCAAAGT+GGG | - | chr3.4:91994892-91994911 | None:intergenic | 30.0% | |
| ACAAAAGTCATAACTTTGCA+TGG | - | chr3.4:91994097-91994116 | None:intergenic | 30.0% | |
| ACAATGATAGAAGCAATATC+AGG | - | chr3.4:91994397-91994416 | None:intergenic | 30.0% | |
| ACAGAGTTTAGTGTATACAA+AGG | + | chr3.4:91994310-91994329 | MS.gene42635:intron | 30.0% | |
| AGGAAAAAGAGAACAAGTTA+AGG | + | chr3.4:91993357-91993376 | MS.gene42635:intron | 30.0% | |
| ATTACTGTGAAATGCTACAT+TGG | - | chr3.4:91993188-91993207 | None:intergenic | 30.0% | |
| ATTGTCCAAATCAAGAATCA+CGG | - | chr3.4:91993388-91993407 | None:intergenic | 30.0% | |
| CAGAGTTTAGTGTATACAAA+GGG | + | chr3.4:91994311-91994330 | MS.gene42635:intron | 30.0% | |
| GAGTTATAAAGACGAAGAAA+TGG | - | chr3.4:91993414-91993433 | None:intergenic | 30.0% | |
| TAATTTAGAGAACACCAAAG+TGG | - | chr3.4:91994893-91994912 | None:intergenic | 30.0% | |
| TGAAAGTTCCAAATCAGATA+CGG | - | chr3.4:91993312-91993331 | None:intergenic | 30.0% | |
| TTGTGACTAACTAACATAAG+TGG | - | chr3.4:91993541-91993560 | None:intergenic | 30.0% | |
| TTTATAACTGTATACGCTTC+CGG | + | chr3.4:91993749-91993768 | MS.gene42635:intron | 30.0% | |
| ! | CATTTTATATTGTCTCTGCT+CGG | + | chr3.4:91993801-91993820 | MS.gene42635:intron | 30.0% |
| ! | GGATTTAGGAATTTGAGATT+TGG | + | chr3.4:91994191-91994210 | MS.gene42635:intron | 30.0% |
| ! | TCAAAAGTAAATGTGCTGTT+AGG | - | chr3.4:91995381-91995400 | None:intergenic | 30.0% |
| ! | TCATCTTTATTTGACAATCC+CGG | + | chr3.4:91995015-91995034 | MS.gene42635:CDS | 30.0% |
| !! | AACAGCACATTTACTTTTGA+GGG | + | chr3.4:91995381-91995400 | MS.gene42635:CDS | 30.0% |
| !! | TAACAGCACATTTACTTTTG+AGG | + | chr3.4:91995380-91995399 | MS.gene42635:CDS | 30.0% |
| !!! | TTATGGTCTTTGTTTTAGTG+TGG | + | chr3.4:91993442-91993461 | MS.gene42635:intron | 30.0% |
| AAAGTAGGCTGTTTATTGTG+AGG | - | chr3.4:91994747-91994766 | None:intergenic | 35.0% | |
| AAAGTCATAACTTTGCATGG+TGG | - | chr3.4:91994094-91994113 | None:intergenic | 35.0% | |
| AACAACACACACCAGAAATA+AGG | - | chr3.4:91995345-91995364 | None:intergenic | 35.0% | |
| AACAGAAGTCTCATCTTCAA+AGG | - | chr3.4:91994047-91994066 | None:intergenic | 35.0% | |
| AGTAAGAATCACACTCAAGT+TGG | + | chr3.4:91995288-91995307 | MS.gene42635:CDS | 35.0% | |
| ATATCCCGTGATTCTTGATT+TGG | + | chr3.4:91993380-91993399 | MS.gene42635:intron | 35.0% | |
| ATGATAGAAGCAATATCAGG+AGG | - | chr3.4:91994394-91994413 | None:intergenic | 35.0% | |
| CTAGAGCTAGAAACATAGAT+GGG | - | chr3.4:91993955-91993974 | None:intergenic | 35.0% | |
| CTTCAGCAAATTGAGATTCA+GGG | - | chr3.4:91995122-91995141 | None:intergenic | 35.0% | |
| CTTCAGTTTCAATTGCAATG+GGG | + | chr3.4:91995508-91995527 | MS.gene42635:CDS | 35.0% | |
| GCTTCAGTTTCAATTGCAAT+GGG | + | chr3.4:91995507-91995526 | MS.gene42635:CDS | 35.0% | |
| GTATGCCTTAATGTACTGTA+GGG | - | chr3.4:91995055-91995074 | None:intergenic | 35.0% | |
| TAAGAGTGGAGAAAATGTTG+TGG | + | chr3.4:91994221-91994240 | MS.gene42635:intron | 35.0% | |
| TACAAAGAGGTCACCATTTA+AGG | - | chr3.4:91994148-91994167 | None:intergenic | 35.0% | |
| TATACACTAAACTCTGTCTC+TGG | - | chr3.4:91994307-91994326 | None:intergenic | 35.0% | |
| TATCTGTGTCAAGTACAAAG+AGG | - | chr3.4:91994161-91994180 | None:intergenic | 35.0% | |
| TATGTAGCATGAGTTTGATC+TGG | + | chr3.4:91993100-91993119 | MS.gene42635:intron | 35.0% | |
| TGAGTTAAGGGATAAAGAGT+TGG | + | chr3.4:91993611-91993630 | MS.gene42635:intron | 35.0% | |
| TGAGTTTCTCAACAGATTCT+CGG | - | chr3.4:91994500-91994519 | None:intergenic | 35.0% | |
| TGCTTCAGTTTCAATTGCAA+TGG | + | chr3.4:91995506-91995525 | MS.gene42635:CDS | 35.0% | |
| TGGAACTTTCACTATAATGG+TGG | + | chr3.4:91993321-91993340 | MS.gene42635:intron | 35.0% | |
| TTCAGCAAATTGAGATTCAG+GGG | - | chr3.4:91995121-91995140 | None:intergenic | 35.0% | |
| TTGTCCAAATCAAGAATCAC+GGG | - | chr3.4:91993387-91993406 | None:intergenic | 35.0% | |
| ! | AATTCTGCTAGCTGTAGTTT+TGG | + | chr3.4:91993205-91993224 | MS.gene42635:intron | 35.0% |
| ! | ACGTGGACATAGTTCATTTT+TGG | - | chr3.4:91993829-91993848 | None:intergenic | 35.0% |
| ! | CACAATAAACAGCCTACTTT+TGG | + | chr3.4:91994747-91994766 | MS.gene42635:intron | 35.0% |
| ! | CATCTTTATTTGACAATCCC+GGG | + | chr3.4:91995016-91995035 | MS.gene42635:CDS | 35.0% |
| !! | AGTTCAACTGGTTTGAGTTA+AGG | + | chr3.4:91993598-91993617 | MS.gene42635:intron | 35.0% |
| !! | GATAGAGAGTACTAGGATTT+AGG | + | chr3.4:91994177-91994196 | MS.gene42635:intron | 35.0% |
| !! | GTTCAACTGGTTTGAGTTAA+GGG | + | chr3.4:91993599-91993618 | MS.gene42635:intron | 35.0% |
| !! | GTTTTAGTGTGGAGTTTCAT+TGG | + | chr3.4:91993453-91993472 | MS.gene42635:intron | 35.0% |
| !! | TGGTGTGTGTTGTTTAGTAA+TGG | + | chr3.4:91995351-91995370 | MS.gene42635:CDS | 35.0% |
| !! | TTTTTCAGTGAGCCAAAAGT+AGG | - | chr3.4:91994762-91994781 | None:intergenic | 35.0% |
| ACAAAACCAGGTTGCTATAG+TGG | + | chr3.4:91995420-91995439 | MS.gene42635:CDS | 40.0% | |
| ACAGTACATTAAGGCATACC+AGG | + | chr3.4:91995056-91995075 | MS.gene42635:CDS | 40.0% | |
| AGAACTGTCCGTATCTGATT+TGG | + | chr3.4:91993301-91993320 | MS.gene42635:intron | 40.0% | |
| AGACTTACTTTGAGTAGCAC+CGG | - | chr3.4:91993023-91993042 | None:intergenic | 40.0% | |
| AGCTCTTCTCGTTTCTTATC+AGG | - | chr3.4:91995254-91995273 | None:intergenic | 40.0% | |
| AGTCACAAATTGGCTGTACT+AGG | + | chr3.4:91993553-91993572 | MS.gene42635:intron | 40.0% | |
| ATGCCTTAACACCACAGTTT+GGG | - | chr3.4:91995152-91995171 | None:intergenic | 40.0% | |
| CAGTACATTAAGGCATACCA+GGG | + | chr3.4:91995057-91995076 | MS.gene42635:CDS | 40.0% | |
| CCTAGAGCTAGAAACATAGA+TGG | - | chr3.4:91993956-91993975 | None:intergenic | 40.0% | |
| CGTATAACTGGTCGTTTCTT+GGG | + | chr3.4:91995183-91995202 | MS.gene42635:CDS | 40.0% | |
| CTTCTGCATCAGAGATGAAT+TGG | + | chr3.4:91994272-91994291 | MS.gene42635:intron | 40.0% | |
| GCTATTATACATGGAACACG+TGG | - | chr3.4:91993846-91993865 | None:intergenic | 40.0% | |
| GCTTCAGCAAATTGAGATTC+AGG | - | chr3.4:91995123-91995142 | None:intergenic | 40.0% | |
| GGTATGCCTTAATGTACTGT+AGG | - | chr3.4:91995056-91995075 | None:intergenic | 40.0% | |
| GTATAACTGGTCGTTTCTTG+GGG | + | chr3.4:91995184-91995203 | MS.gene42635:CDS | 40.0% | |
| GTGGCTAAAGAAACAAAACC+AGG | + | chr3.4:91995408-91995427 | MS.gene42635:CDS | 40.0% | |
| GTTAAGGGATAAAGAGTTGG+AGG | + | chr3.4:91993614-91993633 | MS.gene42635:intron | 40.0% | |
| TCAACTCTTGCTCGTATAAC+TGG | + | chr3.4:91995171-91995190 | MS.gene42635:CDS | 40.0% | |
| TCAGCAAATTGAGATTCAGG+GGG | - | chr3.4:91995120-91995139 | None:intergenic | 40.0% | |
| TCGTATAACTGGTCGTTTCT+TGG | + | chr3.4:91995182-91995201 | MS.gene42635:CDS | 40.0% | |
| TTCATCCTTTCCTTCCTTCT+TGG | + | chr3.4:91992989-91993008 | MS.gene42635:CDS | 40.0% | |
| ! | ATGGTGGAGAAAGAAAGTGA+AGG | + | chr3.4:91993337-91993356 | MS.gene42635:intron | 40.0% |
| ! | CAGCACAGTGTGAAAGTTTT+AGG | - | chr3.4:91992962-91992981 | None:intergenic | 40.0% |
| ! | CATCTTCAAAGGTACATGGT+TGG | - | chr3.4:91994036-91994055 | None:intergenic | 40.0% |
| ! | CTGCTAGTTTGAAAAAGTGC+CGG | - | chr3.4:91993771-91993790 | None:intergenic | 40.0% |
| ! | GTCTCATCTTCAAAGGTACA+TGG | - | chr3.4:91994040-91994059 | None:intergenic | 40.0% |
| ! | TTTGGTCACTTGGTGGAAAA+TGG | + | chr3.4:91993223-91993242 | MS.gene42635:intron | 40.0% |
| !! | AGCACATTTACTTTTGAGGG+TGG | + | chr3.4:91995384-91995403 | MS.gene42635:CDS | 40.0% |
| !! | ATTTACTTTTGAGGGTGGTG+TGG | + | chr3.4:91995389-91995408 | MS.gene42635:CDS | 40.0% |
| !! | CCATCTATGTTTCTAGCTCT+AGG | + | chr3.4:91993953-91993972 | MS.gene42635:intron | 40.0% |
| !! | GATTTGGTGTTCGTTAAGAG+TGG | + | chr3.4:91994207-91994226 | MS.gene42635:intron | 40.0% |
| !! | TGACACAGATAGAGAGTACT+AGG | + | chr3.4:91994170-91994189 | MS.gene42635:intron | 40.0% |
| !!! | TAGCTGTAGTTTTGGTCACT+TGG | + | chr3.4:91993213-91993232 | MS.gene42635:intron | 40.0% |
| AAAAGAGCAGCAACCAGCAA+CGG | - | chr3.4:91994360-91994379 | None:intergenic | 45.0% | |
| AAGCACCAAGAAGGAAGGAA+AGG | - | chr3.4:91992997-91993016 | None:intergenic | 45.0% | |
| AATAGCCACATCACACTGAC+TGG | - | chr3.4:91995483-91995502 | None:intergenic | 45.0% | |
| AGGATTTCAGAAAACGCCTC+AGG | - | chr3.4:91995234-91995253 | None:intergenic | 45.0% | |
| CACAAATTGGCTGTACTAGG+AGG | + | chr3.4:91993556-91993575 | MS.gene42635:intron | 45.0% | |
| CGAAAACAGAACTGCTCACA+AGG | + | chr3.4:91994990-91995009 | MS.gene42635:CDS | 45.0% | |
| GATGCCTTAACACCACAGTT+TGG | - | chr3.4:91995153-91995172 | None:intergenic | 45.0% | |
| GCATTCACTGTTACCCACTT+TGG | + | chr3.4:91994876-91994895 | MS.gene42635:intron | 45.0% | |
| GTGCATGGACATACTTAGTC+TGG | - | chr3.4:91995212-91995231 | None:intergenic | 45.0% | |
| TAAGTATGTCCATGCACCTG+AGG | + | chr3.4:91995215-91995234 | MS.gene42635:CDS | 45.0% | |
| TCTCGCCCTACAGTACATTA+AGG | + | chr3.4:91995047-91995066 | MS.gene42635:CDS | 45.0% | |
| TGCCTTAACACCACAGTTTG+GGG | - | chr3.4:91995151-91995170 | None:intergenic | 45.0% | |
| TTACATGTGTGCTTCCCAGA+TGG | + | chr3.4:91994462-91994481 | MS.gene42635:intron | 45.0% | |
| TTAGCTCCACTATAGCAACC+TGG | - | chr3.4:91995429-91995448 | None:intergenic | 45.0% | |
| ! | ATGGAGGGTCTCCTTATTTC+TGG | + | chr3.4:91995331-91995350 | MS.gene42635:CDS | 45.0% |
| ! | CAGCTACTAACTTGTCTGCA+GGG | - | chr3.4:91994963-91994982 | None:intergenic | 45.0% |
| ! | CGGGTCGTTGCTATTATACA+TGG | - | chr3.4:91993855-91993874 | None:intergenic | 45.0% |
| !! | TTCCTTCTTGGTGCTTCTAC+CGG | + | chr3.4:91993001-91993020 | MS.gene42635:CDS | 45.0% |
| !!! | CGGCACTTTTTCAAACTAGC+AGG | + | chr3.4:91993769-91993788 | MS.gene42635:intron | 45.0% |
| !!! | CTGTAGTTTTGGTCACTTGG+TGG | + | chr3.4:91993216-91993235 | MS.gene42635:intron | 45.0% |
| AAGGCATACCAGGGTGATTG+TGG | + | chr3.4:91995066-91995085 | MS.gene42635:CDS | 50.0% | |
| ATTGGCTGTACTAGGAGGAC+AGG | + | chr3.4:91993561-91993580 | MS.gene42635:intron | 50.0% | |
| GCTAATTATGTGGTCTCCCC+TGG | + | chr3.4:91993896-91993915 | MS.gene42635:intron | 50.0% | |
| GGAGCTAATGATGTGTGCAG+TGG | + | chr3.4:91995441-91995460 | MS.gene42635:CDS | 50.0% | |
| GGAGGTCCTGAGTTCAAACT+CGG | + | chr3.4:91993632-91993651 | MS.gene42635:intron | 50.0% | |
| GGCAGAAGAATCCACCATCT+GGG | - | chr3.4:91994479-91994498 | None:intergenic | 50.0% | |
| GTTCGTCCGAGTTTGAACTC+AGG | - | chr3.4:91993641-91993660 | None:intergenic | 50.0% | |
| TGTGCAGTGGTGCTCATGTT+TGG | + | chr3.4:91995454-91995473 | MS.gene42635:CDS | 50.0% | |
| TTGAGATTCAGGGGGCTTCT+TGG | - | chr3.4:91995112-91995131 | None:intergenic | 50.0% | |
| TTGGCTGTACTAGGAGGACA+GGG | + | chr3.4:91993562-91993581 | MS.gene42635:intron | 50.0% | |
| ! | GAAGCTTTTGCCCCAAACTG+TGG | + | chr3.4:91995138-91995157 | MS.gene42635:CDS | 50.0% |
| ! | GCAGCTACTAACTTGTCTGC+AGG | - | chr3.4:91994964-91994983 | None:intergenic | 50.0% |
| ! | TGCCCCAAACTGTGGTGTTA+AGG | + | chr3.4:91995146-91995165 | MS.gene42635:CDS | 50.0% |
| !! | CAAGTTGGTGCTGCTGTAAC+CGG | + | chr3.4:91995303-91995322 | MS.gene42635:CDS | 50.0% |
| !! | CTGTAACCGGTACTGATGGA+GGG | + | chr3.4:91995316-91995335 | MS.gene42635:CDS | 50.0% |
| !! | GGTAGAAGCACCAAGAAGGA+AGG | - | chr3.4:91993002-91993021 | None:intergenic | 50.0% |
| AGGAGACCCTCCATCAGTAC+CGG | - | chr3.4:91995325-91995344 | None:intergenic | 55.0% | |
| CAGAAAACGCCTCAGGTGCA+TGG | - | chr3.4:91995227-91995246 | None:intergenic | 55.0% | |
| CATGTGTGCTTCCCAGATGG+TGG | + | chr3.4:91994465-91994484 | MS.gene42635:intron | 55.0% | |
| CGGCAGAAGAATCCACCATC+TGG | - | chr3.4:91994480-91994499 | None:intergenic | 55.0% | |
| GGAGGGTTGGGTAGTTCAAC+TGG | + | chr3.4:91993586-91993605 | MS.gene42635:intron | 55.0% | |
| GGTCACCAGTCAGTGTGATG+TGG | + | chr3.4:91995475-91995494 | MS.gene42635:CDS | 55.0% | |
| ! | GCTGCTGTAACCGGTACTGA+TGG | + | chr3.4:91995312-91995331 | MS.gene42635:CDS | 55.0% |
| !! | CACCGGTAGAAGCACCAAGA+AGG | - | chr3.4:91993006-91993025 | None:intergenic | 55.0% |
| !! | CAGGGTGATTGTGGTGCTGT+GGG | + | chr3.4:91995075-91995094 | MS.gene42635:CDS | 55.0% |
| !! | GCTGTAACCGGTACTGATGG+AGG | + | chr3.4:91995315-91995334 | MS.gene42635:CDS | 55.0% |
| CCACAGCACCACAATCACCC+TGG | - | chr3.4:91995077-91995096 | None:intergenic | 60.0% | |
| GCTGTACTAGGAGGACAGGG+CGG | + | chr3.4:91993565-91993584 | MS.gene42635:intron | 60.0% | |
| TACTAGGAGGACAGGGCGGA+GGG | + | chr3.4:91993569-91993588 | MS.gene42635:intron | 60.0% | |
| ! | CCAGGGTGATTGTGGTGCTG+TGG | + | chr3.4:91995074-91995093 | MS.gene42635:CDS | 60.0% |
| !! | GGTGATTGTGGTGCTGTGGG+TGG | + | chr3.4:91995078-91995097 | MS.gene42635:CDS | 60.0% |
| GTACTAGGAGGACAGGGCGG+AGG | + | chr3.4:91993568-91993587 | MS.gene42635:intron | 65.0% | |
| TAGGGCGAGACATGCGAGCC+CGG | - | chr3.4:91995037-91995056 | None:intergenic | 65.0% | |
| AGGAGGACAGGGCGGAGGGT+TGG | + | chr3.4:91993573-91993592 | MS.gene42635:intron | 70.0% | |
| AGGGCGAGACATGCGAGCCC+GGG | - | chr3.4:91995036-91995055 | None:intergenic | 70.0% | |
| GGAGGACAGGGCGGAGGGTT+GGG | + | chr3.4:91993574-91993593 | MS.gene42635:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 91992956 | 91995548 | 91992956 | ID=MS.gene42635 |
| chr3.4 | mRNA | 91992956 | 91995548 | 91992956 | ID=MS.gene42635.t1;Parent=MS.gene42635 |
| chr3.4 | exon | 91992956 | 91993034 | 91992956 | ID=MS.gene42635.t1.exon1;Parent=MS.gene42635.t1 |
| chr3.4 | CDS | 91992956 | 91993034 | 91992956 | ID=cds.MS.gene42635.t1;Parent=MS.gene42635.t1 |
| chr3.4 | exon | 91994944 | 91995548 | 91994944 | ID=MS.gene42635.t1.exon2;Parent=MS.gene42635.t1 |
| chr3.4 | CDS | 91994944 | 91995548 | 91994944 | ID=cds.MS.gene42635.t1;Parent=MS.gene42635.t1 |
| Gene Sequence |
| Protein sequence |
