Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42642.t1 | XP_003603229.1 | 97.7 | 304 | 5 | 1 | 1 | 302 | 1 | 304 | 2.60E-165 | 591.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42642.t1 | Q8IUS5 | 25.6 | 285 | 161 | 10 | 50 | 302 | 93 | 358 | 2.6e-12 | 74.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42642.t1 | G7J939 | 97.7 | 304 | 5 | 1 | 1 | 302 | 1 | 304 | 1.9e-165 | 591.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42642 | MS.gene01173 | PPI |
| MS.gene42642 | MS.gene002205 | PPI |
| MS.gene42642 | MS.gene071915 | PPI |
| MS.gene42642 | MS.gene047420 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42642.t1 | MTR_3g105290 | 97.697 | 304 | 5 | 1 | 1 | 302 | 1 | 304 | 0.0 | 608 |
| MS.gene42642.t1 | MTR_3g105290 | 97.119 | 243 | 5 | 1 | 1 | 241 | 1 | 243 | 4.09e-176 | 486 |
| MS.gene42642.t1 | MTR_3g087050 | 39.322 | 295 | 176 | 3 | 5 | 298 | 6 | 298 | 5.64e-75 | 233 |
| MS.gene42642.t1 | MTR_5g064035 | 38.754 | 289 | 172 | 4 | 13 | 298 | 12 | 298 | 4.90e-69 | 217 |
| MS.gene42642.t1 | MTR_2g008880 | 39.661 | 295 | 174 | 4 | 6 | 298 | 9 | 301 | 1.20e-68 | 216 |
| MS.gene42642.t1 | MTR_5g020250 | 38.194 | 288 | 162 | 5 | 23 | 298 | 19 | 302 | 2.78e-62 | 200 |
| MS.gene42642.t1 | MTR_8g077290 | 37.801 | 291 | 162 | 5 | 23 | 298 | 19 | 305 | 5.22e-62 | 199 |
| MS.gene42642.t1 | MTR_5g020320 | 38.043 | 276 | 161 | 5 | 30 | 299 | 26 | 297 | 5.68e-60 | 194 |
| MS.gene42642.t1 | MTR_5g020260 | 37.370 | 289 | 165 | 6 | 23 | 299 | 19 | 303 | 2.96e-56 | 184 |
| MS.gene42642.t1 | MTR_8g077290 | 38.911 | 257 | 138 | 5 | 23 | 264 | 19 | 271 | 3.97e-55 | 180 |
| MS.gene42642.t1 | MTR_8g090060 | 32.542 | 295 | 162 | 4 | 6 | 298 | 5 | 264 | 1.30e-51 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42642.t1 | AT5G21950 | 51.307 | 306 | 144 | 2 | 1 | 302 | 1 | 305 | 1.53e-116 | 338 |
| MS.gene42642.t1 | AT5G21950 | 51.307 | 306 | 144 | 2 | 1 | 302 | 53 | 357 | 1.18e-115 | 338 |
| MS.gene42642.t1 | AT4G33180 | 51.316 | 304 | 141 | 4 | 2 | 299 | 3 | 305 | 1.36e-110 | 323 |
| MS.gene42642.t1 | AT5G21950 | 52.239 | 268 | 123 | 2 | 1 | 264 | 1 | 267 | 2.79e-102 | 300 |
| MS.gene42642.t1 | AT5G21950 | 50.704 | 213 | 100 | 2 | 1 | 209 | 1 | 212 | 5.81e-73 | 224 |
| MS.gene42642.t1 | AT5G21950 | 50.704 | 213 | 100 | 2 | 1 | 209 | 1 | 212 | 5.81e-73 | 224 |
| MS.gene42642.t1 | AT5G21950 | 50.704 | 213 | 100 | 2 | 1 | 209 | 53 | 264 | 3.98e-72 | 224 |
| MS.gene42642.t1 | AT5G21950 | 50.704 | 213 | 100 | 2 | 1 | 209 | 53 | 264 | 3.98e-72 | 224 |
| MS.gene42642.t1 | AT4G33180 | 51.500 | 200 | 91 | 3 | 2 | 196 | 3 | 201 | 1.11e-69 | 216 |
| MS.gene42642.t1 | AT5G09430 | 36.120 | 299 | 183 | 4 | 6 | 298 | 11 | 307 | 1.99e-65 | 208 |
| MS.gene42642.t1 | AT4G39955 | 35.786 | 299 | 188 | 4 | 2 | 298 | 1 | 297 | 9.19e-64 | 204 |
| MS.gene42642.t1 | AT1G78210 | 37.544 | 285 | 170 | 6 | 20 | 298 | 19 | 301 | 6.88e-60 | 194 |
| MS.gene42642.t1 | AT1G72620 | 36.900 | 271 | 162 | 6 | 33 | 298 | 65 | 331 | 1.35e-56 | 186 |
| MS.gene42642.t1 | AT1G17430 | 35.333 | 300 | 176 | 9 | 7 | 298 | 40 | 329 | 5.41e-55 | 182 |
| MS.gene42642.t1 | AT2G18360 | 34.628 | 309 | 182 | 6 | 6 | 298 | 2 | 306 | 3.84e-53 | 176 |
| MS.gene42642.t1 | AT4G36610 | 34.247 | 292 | 170 | 6 | 23 | 298 | 19 | 304 | 1.27e-48 | 165 |
| MS.gene42642.t1 | AT2G18360 | 34.909 | 275 | 159 | 6 | 6 | 264 | 2 | 272 | 7.43e-46 | 156 |
Find 65 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCGGTTGTAAGAAATTT+AGG | 0.175192 | 3.4:+92094813 | None:intergenic |
| TGGAATAGTTGCGTATAATT+TGG | 0.256443 | 3.4:-92097008 | MS.gene42642:CDS |
| GTTCCCGATCTAATCTTCTT+TGG | 0.272608 | 3.4:-92097145 | MS.gene42642:CDS |
| TTGCAGGGTAATAAGTAAAA+AGG | 0.295321 | 3.4:-92094909 | MS.gene42642:intron |
| CTCGTCCTCATCCACGGTTT+TGG | 0.303897 | 3.4:-92097232 | MS.gene42642:CDS |
| AGAGATTATACTCAGATAAT+AGG | 0.333887 | 3.4:-92096630 | MS.gene42642:CDS |
| AAAGTAGTTATTGCAAGTTC+TGG | 0.338855 | 3.4:-92096956 | MS.gene42642:CDS |
| GAAAAGATGGAGCTTCTAAA+TGG | 0.345980 | 3.4:-92096604 | MS.gene42642:CDS |
| TTTCTTGAGGGACTTCTTAA+GGG | 0.369669 | 3.4:-92096783 | MS.gene42642:intron |
| GGCAAGATTGGAATTGATAA+AGG | 0.387643 | 3.4:-92094888 | MS.gene42642:CDS |
| AAACATTTCACCTCTTCAAC+AGG | 0.392798 | 3.4:-92096554 | MS.gene42642:intron |
| GGAAAATTGTTGGAGAAGAT+AGG | 0.395031 | 3.4:-92097067 | MS.gene42642:CDS |
| TATAATTTGGCGAAGATGTT+GGG | 0.398616 | 3.4:-92096995 | MS.gene42642:CDS |
| ATACATACTCCTTCAATTCA+TGG | 0.401600 | 3.4:+92096401 | None:intergenic |
| CTTCTAAATGGATTGTCTAT+AGG | 0.430621 | 3.4:-92096592 | MS.gene42642:CDS |
| TACCTCCGCCGTTGTTTCAC+CGG | 0.432558 | 3.4:-92097346 | MS.gene42642:CDS |
| ATAATATTGTTGAATTCCTC+CGG | 0.432661 | 3.4:+92094836 | None:intergenic |
| CGCCGTTGTTTCACCGGCGC+CGG | 0.436167 | 3.4:-92097340 | MS.gene42642:CDS |
| TTCAACTGTTGAGGAGAAGA+AGG | 0.453370 | 3.4:+92096857 | None:intergenic |
| GGAATCAGTTGGAAAATTGT+TGG | 0.459337 | 3.4:-92097077 | MS.gene42642:CDS |
| TCCAGGAAGTTCTCGTATTG+TGG | 0.474193 | 3.4:-92096459 | MS.gene42642:intron |
| AATTCATGGGCCATCTGCAC+GGG | 0.491317 | 3.4:+92096415 | None:intergenic |
| AAATGGATTGTCTATAGGAC+AGG | 0.491723 | 3.4:-92096587 | MS.gene42642:CDS |
| GCAGATGGCCCATGAATTGA+AGG | 0.496257 | 3.4:-92096410 | MS.gene42642:CDS |
| GTGGCGTTGTTGAAAAGAGC+TGG | 0.502078 | 3.4:-92096908 | MS.gene42642:CDS |
| TTGAGATAAGAGACCGGCGC+CGG | 0.505406 | 3.4:+92097327 | None:intergenic |
| CATTTAGTTACCTGTTGAAG+AGG | 0.505749 | 3.4:+92096544 | None:intergenic |
| CCATCGTTTCTTAGTTTCGC+CGG | 0.509953 | 3.4:-92097382 | MS.gene42642:CDS |
| AGATAATAGGAAGGAAAAGA+TGG | 0.510309 | 3.4:-92096617 | MS.gene42642:CDS |
| GTATAATTTGGCGAAGATGT+TGG | 0.512839 | 3.4:-92096996 | MS.gene42642:CDS |
| CCAGGAAGTTCTCGTATTGT+GGG | 0.514777 | 3.4:-92096458 | MS.gene42642:intron |
| CAATATATTTCCCGTGCAGA+TGG | 0.516669 | 3.4:-92096425 | MS.gene42642:CDS |
| AGTTTCGCCGGCTTATACAA+CGG | 0.520083 | 3.4:-92097370 | MS.gene42642:CDS |
| CACGTGGTGGGAACGAGTTA+TGG | 0.520296 | 3.4:-92097031 | MS.gene42642:CDS |
| CGCCGGTGAAACAACGGCGG+AGG | 0.521427 | 3.4:+92097344 | None:intergenic |
| GTCCTATGGCGATGTGGCAA+TGG | 0.525095 | 3.4:-92097210 | MS.gene42642:CDS |
| TCTCCAAAGAAGATTAGATC+GGG | 0.527590 | 3.4:+92097142 | None:intergenic |
| AAATTTCAAGCGGAATCAGT+TGG | 0.532529 | 3.4:-92097088 | MS.gene42642:CDS |
| TTCTCCAAAGAAGATTAGAT+CGG | 0.537749 | 3.4:+92097141 | None:intergenic |
| TGTGCCACAAATTGAAAAGC+CGG | 0.542764 | 3.4:-92094855 | MS.gene42642:CDS |
| GTTGTTGAAAAGAGCTGGAT+TGG | 0.546954 | 3.4:-92096903 | MS.gene42642:CDS |
| AGAGGTTGAAGTGTGGAGCT+AGG | 0.550512 | 3.4:+92097170 | None:intergenic |
| TACATACTCCTTCAATTCAT+GGG | 0.553495 | 3.4:+92096402 | None:intergenic |
| TAGGACCAAAACCGTGGATG+AGG | 0.556974 | 3.4:+92097227 | None:intergenic |
| CAATTCATGGGCCATCTGCA+CGG | 0.558178 | 3.4:+92096414 | None:intergenic |
| CCGTGGATGAGGACGAGAGA+AGG | 0.567087 | 3.4:+92097238 | None:intergenic |
| CCTTCTCTCGTCCTCATCCA+CGG | 0.567621 | 3.4:-92097238 | MS.gene42642:CDS |
| CGCCATTGCCACATCGCCAT+AGG | 0.577637 | 3.4:+92097208 | None:intergenic |
| GACCGGCGCCGGTGAAACAA+CGG | 0.598385 | 3.4:+92097338 | None:intergenic |
| ATTATACTCAGATAATAGGA+AGG | 0.616496 | 3.4:-92096626 | MS.gene42642:CDS |
| GAGGTAGCCGTTGTATAAGC+CGG | 0.623456 | 3.4:+92097363 | None:intergenic |
| CAGGAAGTTCTCGTATTGTG+GGG | 0.624648 | 3.4:-92096457 | MS.gene42642:CDS |
| AGGAAGTTCTCGTATTGTGG+GGG | 0.630670 | 3.4:-92096456 | MS.gene42642:CDS |
| AAGAACAGAGAAATTTCAAG+CGG | 0.633582 | 3.4:-92097098 | MS.gene42642:CDS |
| CCGGCGAAACTAAGAAACGA+TGG | 0.642487 | 3.4:+92097382 | None:intergenic |
| AAGATTGGAATTGATAAAGG+AGG | 0.650039 | 3.4:-92094885 | MS.gene42642:CDS |
| GTGGTGGGAACGAGTTATGG+TGG | 0.651158 | 3.4:-92097028 | MS.gene42642:CDS |
| AGATTAGATCGGGAACGTAG+AGG | 0.675856 | 3.4:+92097152 | None:intergenic |
| GGAAGTTCTCGTATTGTGGG+GGG | 0.676838 | 3.4:-92096455 | MS.gene42642:CDS |
| GGAACGTAGAGGTTGAAGTG+TGG | 0.688244 | 3.4:+92097163 | None:intergenic |
| TCGCCATAGGACCAAAACCG+TGG | 0.691429 | 3.4:+92097221 | None:intergenic |
| CATAACTCGTTCCCACCACG+TGG | 0.694739 | 3.4:+92097032 | None:intergenic |
| GCCACAAATTGAAAAGCCGG+AGG | 0.697095 | 3.4:-92094852 | MS.gene42642:CDS |
| CGGCGCCGGTGAAACAACGG+CGG | 0.720587 | 3.4:+92097341 | None:intergenic |
| TATGACAAAGAATCATAACG+TGG | 0.759539 | 3.4:-92096927 | MS.gene42642:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTCTCAAATATTTTAA+TGG | - | chr3.4:92096500-92096519 | MS.gene42642:intron | 10.0% |
| !!! | TGTAATTTTCTTAAAAAAAA+GGG | + | chr3.4:92097005-92097024 | None:intergenic | 10.0% |
| !!! | TTGTAATTTTCTTAAAAAAA+AGG | + | chr3.4:92097006-92097025 | None:intergenic | 10.0% |
| !! | AACTCTAAACTTTAATATAT+GGG | + | chr3.4:92096692-92096711 | None:intergenic | 15.0% |
| !! | ACTTATAATAAGTTCATAAT+GGG | - | chr3.4:92095891-92095910 | MS.gene42642:intron | 15.0% |
| !! | TGAATGAAATTCAATAATAA+GGG | + | chr3.4:92096253-92096272 | None:intergenic | 15.0% |
| !! | TTGAATGAAATTCAATAATA+AGG | + | chr3.4:92096254-92096273 | None:intergenic | 15.0% |
| !!! | TAAAATTAGTTTATAACCTA+TGG | + | chr3.4:92096003-92096022 | None:intergenic | 15.0% |
| !!! | TTTTTAAAATTTTGTTTGAG+AGG | - | chr3.4:92097199-92097218 | MS.gene42642:CDS | 15.0% |
| !! | CACTTATAATAAGTTCATAA+TGG | - | chr3.4:92095890-92095909 | MS.gene42642:intron | 20.0% |
| !! | CATTCAATAAATGATGTATA+TGG | + | chr3.4:92096407-92096426 | None:intergenic | 20.0% |
| !! | CATTTAATAAATAGTGTATG+TGG | - | chr3.4:92096368-92096387 | MS.gene42642:intron | 20.0% |
| !! | GAACTCTAAACTTTAATATA+TGG | + | chr3.4:92096693-92096712 | None:intergenic | 20.0% |
| !! | TAAAATTGGAATACTAGATT+AGG | - | chr3.4:92095984-92096003 | MS.gene42642:intron | 20.0% |
| !!! | ACACATTTAATTTACTTGTA+CGG | + | chr3.4:92095683-92095702 | None:intergenic | 20.0% |
| !!! | ATCTAGTATTCCAATTTTAT+TGG | + | chr3.4:92095983-92096002 | None:intergenic | 20.0% |
| !!! | ATTCAATAATAAGGGTATAA+TGG | + | chr3.4:92096245-92096264 | None:intergenic | 20.0% |
| !!! | TCTAGTATTCCAATTTTATT+GGG | + | chr3.4:92095982-92096001 | None:intergenic | 20.0% |
| ! | AAGAAAAAATTAGGCACAAA+AGG | + | chr3.4:92095399-92095418 | None:intergenic | 25.0% |
| ! | AAGTGTATCTATATGTTACT+AGG | + | chr3.4:92095875-92095894 | None:intergenic | 25.0% |
| ! | AATAAGTAAAAAGGCAAGAT+TGG | - | chr3.4:92097296-92097315 | MS.gene42642:CDS | 25.0% |
| ! | AATATATGGGAAATGTTAAC+CGG | + | chr3.4:92096679-92096698 | None:intergenic | 25.0% |
| ! | ACAAAATATTATGCAGGATT+TGG | + | chr3.4:92095821-92095840 | None:intergenic | 25.0% |
| ! | ACATTTCAATAAACCCATTT+CGG | + | chr3.4:92097114-92097133 | None:intergenic | 25.0% |
| ! | AGAAAAAATTAGGCACAAAA+GGG | + | chr3.4:92095398-92095417 | None:intergenic | 25.0% |
| ! | AGAGATTATACTCAGATAAT+AGG | - | chr3.4:92095566-92095585 | MS.gene42642:intron | 25.0% |
| ! | ATAACCTATGGATGATATTT+GGG | + | chr3.4:92096027-92096046 | None:intergenic | 25.0% |
| ! | ATAATATTGTTGAATTCCTC+CGG | + | chr3.4:92097363-92097382 | None:intergenic | 25.0% |
| ! | ATATAAGATTGATTGATTGG+TGG | - | chr3.4:92095914-92095933 | MS.gene42642:intron | 25.0% |
| ! | ATTATACTCAGATAATAGGA+AGG | - | chr3.4:92095570-92095589 | MS.gene42642:intron | 25.0% |
| ! | ATTTCGGTTGTAAGAAATTT+AGG | + | chr3.4:92097386-92097405 | None:intergenic | 25.0% |
| ! | CTTCTTATTAACTTATTGCA+GGG | - | chr3.4:92097272-92097291 | MS.gene42642:CDS | 25.0% |
| ! | TATAACCTATGGATGATATT+TGG | + | chr3.4:92096028-92096047 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr3.4:92096286-92096305 | MS.gene42642:intron | 25.0% |
| ! | TCCTTATTAATTGTAGTTAG+TGG | + | chr3.4:92096290-92096309 | None:intergenic | 25.0% |
| ! | TTCACTATGTTAGGAATTTA+CGG | - | chr3.4:92096882-92096901 | MS.gene42642:CDS | 25.0% |
| !!! | ATCAAATTTTTCAACTGTTG+AGG | + | chr3.4:92095351-92095370 | None:intergenic | 25.0% |
| !!! | TCTTACATTTGATTTGATGA+TGG | - | chr3.4:92096809-92096828 | MS.gene42642:CDS | 25.0% |
| AAAATTATCCAATGGATCGA+TGG | - | chr3.4:92096095-92096114 | MS.gene42642:intron | 30.0% | |
| AAAGTAGTTATTGCAAGTTC+TGG | - | chr3.4:92095240-92095259 | MS.gene42642:intron | 30.0% | |
| AAGAACAGAGAAATTTCAAG+CGG | - | chr3.4:92095098-92095117 | MS.gene42642:intron | 30.0% | |
| AAGATTGGAATTGATAAAGG+AGG | - | chr3.4:92097311-92097330 | MS.gene42642:CDS | 30.0% | |
| AAGTCCCTCAAGAAAAAATT+AGG | + | chr3.4:92095408-92095427 | None:intergenic | 30.0% | |
| AGATAATAGGAAGGAAAAGA+TGG | - | chr3.4:92095579-92095598 | MS.gene42642:intron | 30.0% | |
| AGATGAAAGAACATATGGAA+GGG | - | chr3.4:92096938-92096957 | MS.gene42642:CDS | 30.0% | |
| AGCACAAGTGAAAAGAAAAT+TGG | + | chr3.4:92095849-92095868 | None:intergenic | 30.0% | |
| ATAAGCAGTCCCAATAAAAT+TGG | - | chr3.4:92095970-92095989 | MS.gene42642:intron | 30.0% | |
| ATACATACTCCTTCAATTCA+TGG | + | chr3.4:92095798-92095817 | None:intergenic | 30.0% | |
| ATGGAGGTAGTGAAAAAAAA+GGG | - | chr3.4:92097054-92097073 | MS.gene42642:CDS | 30.0% | |
| CCTGCAATAAGTTAATAAGA+AGG | + | chr3.4:92097274-92097293 | None:intergenic | 30.0% | |
| CCTTCTTATTAACTTATTGC+AGG | - | chr3.4:92097271-92097290 | MS.gene42642:CDS | 30.0% | |
| GCAGAAACAAAATATTATGC+AGG | + | chr3.4:92095827-92095846 | None:intergenic | 30.0% | |
| GGGATATAAGATTGATTGAT+TGG | - | chr3.4:92095911-92095930 | MS.gene42642:intron | 30.0% | |
| GTGATGTGAAATTACCAAAA+TGG | - | chr3.4:92096979-92096998 | MS.gene42642:CDS | 30.0% | |
| TACATACTCCTTCAATTCAT+GGG | + | chr3.4:92095797-92095816 | None:intergenic | 30.0% | |
| TAGATCCCAAAATTATCCAA+TGG | - | chr3.4:92096087-92096106 | MS.gene42642:intron | 30.0% | |
| TATAATTTGGCGAAGATGTT+GGG | - | chr3.4:92095201-92095220 | MS.gene42642:intron | 30.0% | |
| TATGACAAAGAATCATAACG+TGG | - | chr3.4:92095269-92095288 | MS.gene42642:intron | 30.0% | |
| TCACTATGTTAGGAATTTAC+GGG | - | chr3.4:92096883-92096902 | MS.gene42642:CDS | 30.0% | |
| TCTCAAAATAAGTGTCTCTT+TGG | - | chr3.4:92096150-92096169 | MS.gene42642:intron | 30.0% | |
| TGGAATAGTTGCGTATAATT+TGG | - | chr3.4:92095188-92095207 | MS.gene42642:intron | 30.0% | |
| TTCTCCAAAGAAGATTAGAT+CGG | + | chr3.4:92095058-92095077 | None:intergenic | 30.0% | |
| TTGCAGGGTAATAAGTAAAA+AGG | - | chr3.4:92097287-92097306 | MS.gene42642:CDS | 30.0% | |
| ! | AAGTTTCTTACATTTGAGAC+CGG | - | chr3.4:92096442-92096461 | MS.gene42642:CDS | 30.0% |
| ! | ATCGATCCATTGGATAATTT+TGG | + | chr3.4:92096096-92096115 | None:intergenic | 30.0% |
| ! | ATTGATTGATTGGTGGTTAT+GGG | - | chr3.4:92095921-92095940 | MS.gene42642:intron | 30.0% |
| ! | CTTAAAAAAAAGGGCCATTT+TGG | + | chr3.4:92096996-92097015 | None:intergenic | 30.0% |
| ! | TCGATCCATTGGATAATTTT+GGG | + | chr3.4:92096095-92096114 | None:intergenic | 30.0% |
| ! | TTGTTTTCTTAACCAATTCC+TGG | - | chr3.4:92096648-92096667 | MS.gene42642:intron | 30.0% |
| !! | ATTTTAATGGTCATGCTAAC+CGG | - | chr3.4:92096513-92096532 | MS.gene42642:intron | 30.0% |
| !! | CTTCTAAATGGATTGTCTAT+AGG | - | chr3.4:92095604-92095623 | MS.gene42642:intron | 30.0% |
| !! | TTTTGTGTGGATTTGTTTGT+TGG | + | chr3.4:92094937-92094956 | None:intergenic | 30.0% |
| !!! | GATTTTTTGAGATAAGAGAC+CGG | + | chr3.4:92094878-92094897 | None:intergenic | 30.0% |
| !!! | TGTGCCTAATTTTTTCTTGA+GGG | - | chr3.4:92095401-92095420 | MS.gene42642:intron | 30.0% |
| !!! | TTGTGCCTAATTTTTTCTTG+AGG | - | chr3.4:92095400-92095419 | MS.gene42642:intron | 30.0% |
| AAACATTTCACCTCTTCAAC+AGG | - | chr3.4:92095642-92095661 | MS.gene42642:intron | 35.0% | |
| AAATTTCAAGCGGAATCAGT+TGG | - | chr3.4:92095108-92095127 | MS.gene42642:intron | 35.0% | |
| ACGTAATTTGAACTCTCGTA+TGG | - | chr3.4:92095494-92095513 | MS.gene42642:intron | 35.0% | |
| ATCAATTTCATGGCCAAAGT+AGG | + | chr3.4:92095952-92095971 | None:intergenic | 35.0% | |
| ATCATCCTCATCATAACCTA+TGG | + | chr3.4:92096760-92096779 | None:intergenic | 35.0% | |
| ATTTCGCATTACTCATATCC+AGG | - | chr3.4:92095720-92095739 | MS.gene42642:intron | 35.0% | |
| CATGTATGCTTCACTATGTT+AGG | - | chr3.4:92096873-92096892 | MS.gene42642:CDS | 35.0% | |
| CATTTAGTTACCTGTTGAAG+AGG | + | chr3.4:92095655-92095674 | None:intergenic | 35.0% | |
| GAAAAGATGGAGCTTCTAAA+TGG | - | chr3.4:92095592-92095611 | MS.gene42642:intron | 35.0% | |
| GAACTCTCGTATGGTAAAAA+GGG | - | chr3.4:92095503-92095522 | MS.gene42642:intron | 35.0% | |
| GACTTCTTTAACCAGAATCA+TGG | + | chr3.4:92096542-92096561 | None:intergenic | 35.0% | |
| GAGAGAGATGAAAGAACATA+TGG | - | chr3.4:92096933-92096952 | MS.gene42642:CDS | 35.0% | |
| GAGATGAAAGAACATATGGA+AGG | - | chr3.4:92096937-92096956 | MS.gene42642:CDS | 35.0% | |
| GATGGAGGTAGTGAAAAAAA+AGG | - | chr3.4:92097053-92097072 | MS.gene42642:CDS | 35.0% | |
| GGAAAATTGTTGGAGAAGAT+AGG | - | chr3.4:92095129-92095148 | MS.gene42642:intron | 35.0% | |
| GGAATCAGTTGGAAAATTGT+TGG | - | chr3.4:92095119-92095138 | MS.gene42642:intron | 35.0% | |
| GGCAAGATTGGAATTGATAA+AGG | - | chr3.4:92097308-92097327 | MS.gene42642:CDS | 35.0% | |
| GTATAATTTGGCGAAGATGT+TGG | - | chr3.4:92095200-92095219 | MS.gene42642:intron | 35.0% | |
| TCAATTTCATGGCCAAAGTA+GGG | + | chr3.4:92095951-92095970 | None:intergenic | 35.0% | |
| TCATCCTCATCATAACCTAT+GGG | + | chr3.4:92096759-92096778 | None:intergenic | 35.0% | |
| TCGTATGGTAAAAAGGGAAA+GGG | - | chr3.4:92095509-92095528 | MS.gene42642:intron | 35.0% | |
| TCTCAAAATAATACTCCCTC+CGG | + | chr3.4:92096464-92096483 | None:intergenic | 35.0% | |
| TCTCCAAAGAAGATTAGATC+GGG | + | chr3.4:92095057-92095076 | None:intergenic | 35.0% | |
| TGAACTCTCGTATGGTAAAA+AGG | - | chr3.4:92095502-92095521 | MS.gene42642:intron | 35.0% | |
| TTAGCCCAAATATCATCCAT+AGG | - | chr3.4:92096020-92096039 | MS.gene42642:intron | 35.0% | |
| TTTCAATAAACCCATTTCGG+CGG | + | chr3.4:92097111-92097130 | None:intergenic | 35.0% | |
| TTTCTTGAGGGACTTCTTAA+GGG | - | chr3.4:92095413-92095432 | MS.gene42642:intron | 35.0% | |
| ! | ACGAAACATCTCTCCATTTT+TGG | - | chr3.4:92094908-92094927 | MS.gene42642:intron | 35.0% |
| ! | GATAAGTTGACATCATTACG+TGG | - | chr3.4:92096714-92096733 | MS.gene42642:intron | 35.0% |
| ! | GATTGATTGATTGGTGGTTA+TGG | - | chr3.4:92095920-92095939 | MS.gene42642:intron | 35.0% |
| ! | GATTTTTGCTCTTTGCTCTT+TGG | - | chr3.4:92096834-92096853 | MS.gene42642:CDS | 35.0% |
| ! | GGGATCTAGTTTATAACCTA+TGG | + | chr3.4:92096075-92096094 | None:intergenic | 35.0% |
| ! | TTTTCTTGAGGGACTTCTTA+AGG | - | chr3.4:92095412-92095431 | MS.gene42642:intron | 35.0% |
| !! | AAATGGATTGTCTATAGGAC+AGG | - | chr3.4:92095609-92095628 | MS.gene42642:intron | 35.0% |
| !! | CGAAACATCTCTCCATTTTT+GGG | - | chr3.4:92094909-92094928 | MS.gene42642:intron | 35.0% |
| !! | GAAACATCTCTCCATTTTTG+GGG | - | chr3.4:92094910-92094929 | MS.gene42642:intron | 35.0% |
| !!! | AGACACTTATTTTGAGACGA+AGG | + | chr3.4:92096147-92096166 | None:intergenic | 35.0% |
| AAAGAGAGAACTGAGGGAAT+AGG | - | chr3.4:92096910-92096929 | MS.gene42642:CDS | 40.0% | |
| AAATGTTAACCGGTGTTTCC+AGG | + | chr3.4:92096669-92096688 | None:intergenic | 40.0% | |
| AAGAGAGAACTGAGGGAATA+GGG | - | chr3.4:92096911-92096930 | MS.gene42642:CDS | 40.0% | |
| AGAACATATGGAAGGGTTTG+AGG | - | chr3.4:92096945-92096964 | MS.gene42642:CDS | 40.0% | |
| ATGAAATGCCATCGATCCAT+TGG | + | chr3.4:92096106-92096125 | None:intergenic | 40.0% | |
| CAATATATTTCCCGTGCAGA+TGG | - | chr3.4:92095771-92095790 | MS.gene42642:intron | 40.0% | |
| CATCCTCATCATAACCTATG+GGG | + | chr3.4:92096758-92096777 | None:intergenic | 40.0% | |
| CTCGTATGGTAAAAAGGGAA+AGG | - | chr3.4:92095508-92095527 | MS.gene42642:intron | 40.0% | |
| GAACATATGGAAGGGTTTGA+GGG | - | chr3.4:92096946-92096965 | MS.gene42642:CDS | 40.0% | |
| GGGACTGCTTATCAATTTCA+TGG | + | chr3.4:92095962-92095981 | None:intergenic | 40.0% | |
| GTTATGGGTTTACCCTACTT+TGG | - | chr3.4:92095936-92095955 | MS.gene42642:intron | 40.0% | |
| GTTCCCGATCTAATCTTCTT+TGG | - | chr3.4:92095051-92095070 | MS.gene42642:intron | 40.0% | |
| GTTGTTGAAAAGAGCTGGAT+TGG | - | chr3.4:92095293-92095312 | MS.gene42642:intron | 40.0% | |
| TAACCAATTCCTGGAAACAC+CGG | - | chr3.4:92096657-92096676 | MS.gene42642:intron | 40.0% | |
| TACAAAACAGCCATCCACAT+TGG | - | chr3.4:92097021-92097040 | MS.gene42642:CDS | 40.0% | |
| TGTGCCACAAATTGAAAAGC+CGG | - | chr3.4:92097341-92097360 | MS.gene42642:CDS | 40.0% | |
| TTAACCAGAATCATGGACAC+CGG | + | chr3.4:92096535-92096554 | None:intergenic | 40.0% | |
| TTCAACTGTTGAGGAGAAGA+AGG | + | chr3.4:92095342-92095361 | None:intergenic | 40.0% | |
| ! | TGTTTGTTGGACCCCAAAAA+TGG | + | chr3.4:92094924-92094943 | None:intergenic | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | - | chr3.4:92096446-92096465 | MS.gene42642:CDS | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | - | chr3.4:92096445-92096464 | MS.gene42642:CDS | 40.0% |
| ACACCCCATAGGTTATGATG+AGG | - | chr3.4:92096752-92096771 | MS.gene42642:intron | 45.0% | |
| AGATTAGATCGGGAACGTAG+AGG | + | chr3.4:92095047-92095066 | None:intergenic | 45.0% | |
| AGCAACTCGTGTAAGTCATG+TGG | + | chr3.4:92097250-92097269 | None:intergenic | 45.0% | |
| AGGAAGTTCTCGTATTGTGG+GGG | - | chr3.4:92095740-92095759 | MS.gene42642:intron | 45.0% | |
| CAGGAAGTTCTCGTATTGTG+GGG | - | chr3.4:92095739-92095758 | MS.gene42642:intron | 45.0% | |
| CATACACATGCCAATGTGGA+TGG | + | chr3.4:92097034-92097053 | None:intergenic | 45.0% | |
| CATTGGCATGTGTATGATGG+AGG | - | chr3.4:92097038-92097057 | MS.gene42642:CDS | 45.0% | |
| CCACATTGGCATGTGTATGA+TGG | - | chr3.4:92097035-92097054 | MS.gene42642:CDS | 45.0% | |
| CCAGGAAGTTCTCGTATTGT+GGG | - | chr3.4:92095738-92095757 | MS.gene42642:intron | 45.0% | |
| CCATCATACACATGCCAATG+TGG | + | chr3.4:92097038-92097057 | None:intergenic | 45.0% | |
| CCATCGTTTCTTAGTTTCGC+CGG | - | chr3.4:92094814-92094833 | MS.gene42642:CDS | 45.0% | |
| GCAACTCGTGTAAGTCATGT+GGG | + | chr3.4:92097249-92097268 | None:intergenic | 45.0% | |
| GGAGAGAAAGAGAGAACTGA+GGG | - | chr3.4:92096904-92096923 | MS.gene42642:CDS | 45.0% | |
| TAACCGGTGTTTCCAGGAAT+TGG | + | chr3.4:92096663-92096682 | None:intergenic | 45.0% | |
| TCCAGGAAGTTCTCGTATTG+TGG | - | chr3.4:92095737-92095756 | MS.gene42642:intron | 45.0% | |
| ! | CTCTTTGCTCTTTGGAGACT+TGG | - | chr3.4:92096842-92096861 | MS.gene42642:CDS | 45.0% |
| ! | GACGAGAGAAGGTTTTTGTG+TGG | + | chr3.4:92094950-92094969 | None:intergenic | 45.0% |
| ! | TCCTCCGGCTTTTCAATTTG+TGG | + | chr3.4:92097348-92097367 | None:intergenic | 45.0% |
| !! | AGTTTCGCCGGCTTATACAA+CGG | - | chr3.4:92094826-92094845 | MS.gene42642:CDS | 45.0% |
| AACTGAAACCACCGCCGAAA+TGG | - | chr3.4:92097097-92097116 | MS.gene42642:CDS | 50.0% | |
| AATTCATGGGCCATCTGCAC+GGG | + | chr3.4:92095784-92095803 | None:intergenic | 50.0% | |
| ACTGAAACCACCGCCGAAAT+GGG | - | chr3.4:92097098-92097117 | MS.gene42642:CDS | 50.0% | |
| AGAGGTTGAAGTGTGGAGCT+AGG | + | chr3.4:92095029-92095048 | None:intergenic | 50.0% | |
| CAATAAACCCATTTCGGCGG+TGG | + | chr3.4:92097108-92097127 | None:intergenic | 50.0% | |
| CAATTCATGGGCCATCTGCA+CGG | + | chr3.4:92095785-92095804 | None:intergenic | 50.0% | |
| CATATGGAAGGGTTTGAGGG+CGG | - | chr3.4:92096949-92096968 | MS.gene42642:CDS | 50.0% | |
| CCCACAATACGAGAACTTCC+TGG | + | chr3.4:92095741-92095760 | None:intergenic | 50.0% | |
| CCGGCGAAACTAAGAAACGA+TGG | + | chr3.4:92094817-92094836 | None:intergenic | 50.0% | |
| CTAACCGGTGTCCATGATTC+TGG | - | chr3.4:92096528-92096547 | MS.gene42642:intron | 50.0% | |
| CTCACTCTTCTACACCCCAT+AGG | - | chr3.4:92096741-92096760 | MS.gene42642:intron | 50.0% | |
| GAGGTAGCCGTTGTATAAGC+CGG | + | chr3.4:92094836-92094855 | None:intergenic | 50.0% | |
| GCAGATGGCCCATGAATTGA+AGG | - | chr3.4:92095786-92095805 | MS.gene42642:intron | 50.0% | |
| GCCACAAATTGAAAAGCCGG+AGG | - | chr3.4:92097344-92097363 | MS.gene42642:CDS | 50.0% | |
| GGAACGTAGAGGTTGAAGTG+TGG | + | chr3.4:92095036-92095055 | None:intergenic | 50.0% | |
| GGAAGTTCTCGTATTGTGGG+GGG | - | chr3.4:92095741-92095760 | MS.gene42642:intron | 50.0% | |
| GGGAGAGAAAGAGAGAACTG+AGG | - | chr3.4:92096903-92096922 | MS.gene42642:CDS | 50.0% | |
| GTGGCGTTGTTGAAAAGAGC+TGG | - | chr3.4:92095288-92095307 | MS.gene42642:intron | 50.0% | |
| TAGGACCAAAACCGTGGATG+AGG | + | chr3.4:92094972-92094991 | None:intergenic | 50.0% | |
| TCGTGTAAGTCATGTGGGCA+TGG | + | chr3.4:92097244-92097263 | None:intergenic | 50.0% | |
| !! | AGGTGTGAAAAAGTGCCACG+TGG | - | chr3.4:92095149-92095168 | MS.gene42642:intron | 50.0% |
| !! | CATCCACGGTTTTGGTCCTA+TGG | - | chr3.4:92094972-92094991 | MS.gene42642:intron | 50.0% |
| !! | GTGAAAAAGTGCCACGTGGT+GGG | - | chr3.4:92095153-92095172 | MS.gene42642:intron | 50.0% |
| !! | GTTTTGGTCCTATGGCGATG+TGG | - | chr3.4:92094980-92094999 | MS.gene42642:intron | 50.0% |
| !! | TGTGAAAAAGTGCCACGTGG+TGG | - | chr3.4:92095152-92095171 | MS.gene42642:intron | 50.0% |
| CATAACTCGTTCCCACCACG+TGG | + | chr3.4:92095167-92095186 | None:intergenic | 55.0% | |
| CCTTCTCTCGTCCTCATCCA+CGG | - | chr3.4:92094958-92094977 | MS.gene42642:intron | 55.0% | |
| GTCCTATGGCGATGTGGCAA+TGG | - | chr3.4:92094986-92095005 | MS.gene42642:intron | 55.0% | |
| TCGCCATAGGACCAAAACCG+TGG | + | chr3.4:92094978-92094997 | None:intergenic | 55.0% | |
| TTGAGATAAGAGACCGGCGC+CGG | + | chr3.4:92094872-92094891 | None:intergenic | 55.0% | |
| ! | CACGTGGTGGGAACGAGTTA+TGG | - | chr3.4:92095165-92095184 | MS.gene42642:intron | 55.0% |
| ! | CTCGTCCTCATCCACGGTTT+TGG | - | chr3.4:92094964-92094983 | MS.gene42642:intron | 55.0% |
| ! | GTGGTGGGAACGAGTTATGG+TGG | - | chr3.4:92095168-92095187 | MS.gene42642:intron | 55.0% |
| ! | TACCTCCGCCGTTGTTTCAC+CGG | - | chr3.4:92094850-92094869 | MS.gene42642:CDS | 55.0% |
| AGGGTTTGAGGGCGGTGTGT+TGG | - | chr3.4:92096957-92096976 | MS.gene42642:CDS | 60.0% | |
| CCGTGGATGAGGACGAGAGA+AGG | + | chr3.4:92094961-92094980 | None:intergenic | 60.0% | |
| CGCCATTGCCACATCGCCAT+AGG | + | chr3.4:92094991-92095010 | None:intergenic | 60.0% | |
| !! | GACCGGCGCCGGTGAAACAA+CGG | + | chr3.4:92094861-92094880 | None:intergenic | 65.0% |
| CGCCGGTGAAACAACGGCGG+AGG | + | chr3.4:92094855-92094874 | None:intergenic | 70.0% | |
| ! | CGCCGTTGTTTCACCGGCGC+CGG | - | chr3.4:92094856-92094875 | MS.gene42642:CDS | 70.0% |
| !! | CGGCGCCGGTGAAACAACGG+CGG | + | chr3.4:92094858-92094877 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92094808 | 92097410 | 92094808 | ID=MS.gene42642 |
| chr3.4 | mRNA | 92094808 | 92097410 | 92094808 | ID=MS.gene42642.t1;Parent=MS.gene42642 |
| chr3.4 | exon | 92096784 | 92097410 | 92096784 | ID=MS.gene42642.t1.exon1;Parent=MS.gene42642.t1 |
| chr3.4 | CDS | 92096784 | 92097410 | 92096784 | ID=cds.MS.gene42642.t1;Parent=MS.gene42642.t1 |
| chr3.4 | exon | 92096555 | 92096650 | 92096555 | ID=MS.gene42642.t1.exon2;Parent=MS.gene42642.t1 |
| chr3.4 | CDS | 92096555 | 92096650 | 92096555 | ID=cds.MS.gene42642.t1;Parent=MS.gene42642.t1 |
| chr3.4 | exon | 92096409 | 92096476 | 92096409 | ID=MS.gene42642.t1.exon3;Parent=MS.gene42642.t1 |
| chr3.4 | CDS | 92096409 | 92096476 | 92096409 | ID=cds.MS.gene42642.t1;Parent=MS.gene42642.t1 |
| chr3.4 | exon | 92094808 | 92094925 | 92094808 | ID=MS.gene42642.t1.exon4;Parent=MS.gene42642.t1 |
| chr3.4 | CDS | 92094808 | 92094925 | 92094808 | ID=cds.MS.gene42642.t1;Parent=MS.gene42642.t1 |
| Gene Sequence |
| Protein sequence |
