Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42749.t1 | RHN40643.1 | 89.6 | 367 | 18 | 1 | 27 | 373 | 269 | 635 | 5.70E-146 | 527.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42749.t1 | Q9SA32 | 42.4 | 321 | 131 | 4 | 73 | 373 | 6 | 292 | 5.7e-54 | 213.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42749.t1 | A0A396GJC6 | 89.6 | 367 | 18 | 1 | 27 | 373 | 269 | 635 | 4.1e-146 | 527.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050297 | MS.gene42749 | 0.825836 | 3.77E-54 | -1.69E-46 |
| MS.gene054643 | MS.gene42749 | 0.805165 | 1.52E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 74 sgRNAs with CRISPR-Local
Find 401 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTATACAACTTCATTAA+TGG | 0.209874 | 8.4:+54330760 | MS.gene42749:CDS |
| ATGCTATATATCAGTACTAT+TGG | 0.246809 | 8.4:+54330963 | MS.gene42749:CDS |
| TTGCAGATTCTCAAGGAAAA+TGG | 0.281849 | 8.4:+54330866 | MS.gene42749:intron |
| CCTCAAAGTATGAGGACTTT+TGG | 0.284590 | 8.4:+54332591 | MS.gene42749:CDS |
| AACTAGTACAATTGCCTCTA+AGG | 0.304795 | 8.4:+54330487 | MS.gene42749:CDS |
| TCAAGGAAAATGGTGAAGTT+AGG | 0.319988 | 8.4:+54330876 | MS.gene42749:CDS |
| TGATTTGTTCTGGCCTGATA+TGG | 0.332477 | 8.4:-54330459 | None:intergenic |
| CAGTTCCAAGGAGGGTAAAC+AGG | 0.338773 | 8.4:+54328761 | MS.gene42749:CDS |
| CTAAAATCTAAATCCATATC+AGG | 0.341068 | 8.4:+54330446 | MS.gene42749:CDS |
| TGCTCCTTGCATTAATTAGT+TGG | 0.354273 | 8.4:-54329156 | None:intergenic |
| TGCTATATATCAGTACTATT+GGG | 0.372911 | 8.4:+54330964 | MS.gene42749:CDS |
| TTAATGCAAGGAGCAATCTA+TGG | 0.378840 | 8.4:+54329164 | MS.gene42749:CDS |
| ATGTCTTTGACTTGCATCAT+TGG | 0.383091 | 8.4:-54330561 | None:intergenic |
| CTGTTTACCCTCCTTGGAAC+TGG | 0.389619 | 8.4:-54328760 | None:intergenic |
| TCTACCCTGTTTACCCTCCT+TGG | 0.405631 | 8.4:-54328766 | None:intergenic |
| TGCGGGGAGTATTGGTCAAC+TGG | 0.421771 | 8.4:+54332242 | MS.gene42749:CDS |
| GCTCCTTGCATTAATTAGTT+GGG | 0.422245 | 8.4:-54329155 | None:intergenic |
| TTAGAGGCAATTGTACTAGT+TGG | 0.428782 | 8.4:-54330485 | None:intergenic |
| TCCTCATATGCGGGGAGTAT+TGG | 0.436208 | 8.4:+54332234 | MS.gene42749:CDS |
| TTGATTGTGGTCTTAACAAC+AGG | 0.438316 | 8.4:-54330401 | None:intergenic |
| CCAAAAGTCCTCATACTTTG+AGG | 0.440603 | 8.4:-54332591 | None:intergenic |
| CTGACTTTCTTGAGGAGACT+TGG | 0.449935 | 8.4:-54330016 | None:intergenic |
| TGTCTGTTCCAAGCACTTCA+AGG | 0.453793 | 8.4:+54328728 | None:intergenic |
| CAAGGAAAATGGTGAAGTTA+GGG | 0.456754 | 8.4:+54330877 | MS.gene42749:CDS |
| AAATGGTGAAGTTAGGGAGC+AGG | 0.462821 | 8.4:+54330883 | MS.gene42749:CDS |
| ATATCTGACAGTGACATTGT+TGG | 0.470336 | 8.4:+54332496 | MS.gene42749:CDS |
| TGTATAAGATTTCCGACGGC+TGG | 0.471671 | 8.4:-54330747 | None:intergenic |
| TGGAAGACCACTTTGGCCAC+TGG | 0.483759 | 8.4:-54329009 | None:intergenic |
| CATACTTTGAGGCCAACAAA+AGG | 0.492005 | 8.4:-54332580 | None:intergenic |
| TGTTGTTAAGACCACAATCA+AGG | 0.496768 | 8.4:+54330403 | MS.gene42749:CDS |
| TTACATTCATCGTCTATACT+TGG | 0.497518 | 8.4:-54330914 | None:intergenic |
| CACTGTCAGATATAGTGTCT+CGG | 0.498442 | 8.4:-54332486 | None:intergenic |
| TTTGTTGGCCTCAAAGTATG+AGG | 0.498991 | 8.4:+54332583 | MS.gene42749:CDS |
| GGCTGCACAATCAGATATGA+AGG | 0.502649 | 8.4:+54333332 | MS.gene42749:CDS |
| ATGACAACTGAATTATTCTC+AGG | 0.516778 | 8.4:-54330635 | None:intergenic |
| TGGGGAGAGCAGTTTGAAAA+CGG | 0.518960 | 8.4:+54330694 | MS.gene42749:CDS |
| ACTGTCAGATATAGTGTCTC+GGG | 0.522142 | 8.4:-54332485 | None:intergenic |
| CCTTAATTTGCAGATTCTCA+AGG | 0.524626 | 8.4:+54330859 | MS.gene42749:intron |
| ACCAATACTCCCCGCATATG+AGG | 0.531007 | 8.4:-54332235 | None:intergenic |
| AGAGATTACTCCTCATATGC+GGG | 0.536325 | 8.4:+54332225 | MS.gene42749:CDS |
| TACAATTGCCTCTAAGGATG+AGG | 0.537132 | 8.4:+54330493 | MS.gene42749:CDS |
| TCTTACTTGGAAGACCACTT+TGG | 0.541955 | 8.4:-54329016 | None:intergenic |
| TACCTTGACTGACTTTCTTG+AGG | 0.544981 | 8.4:-54330024 | None:intergenic |
| ACGAGTGAGATGCAGTTAGT+TGG | 0.548556 | 8.4:+54332548 | MS.gene42749:CDS |
| AAAGACATCAACCATCTGAT+GGG | 0.554208 | 8.4:+54330576 | MS.gene42749:CDS |
| CAAAGACATCGACCATCTGA+TGG | 0.555227 | 8.4:+54330674 | MS.gene42749:CDS |
| ATACTTTGAGGCCAACAAAA+GGG | 0.555362 | 8.4:-54332579 | None:intergenic |
| ATTCATCGTCTATACTTGGT+AGG | 0.558688 | 8.4:-54330910 | None:intergenic |
| AAAGACATCGACCATCTGAT+GGG | 0.563380 | 8.4:+54330675 | MS.gene42749:CDS |
| ATTGGTCAACTGGCTAATTG+AGG | 0.566050 | 8.4:+54332252 | MS.gene42749:CDS |
| ATACTGCACTCCCCATCAGA+TGG | 0.569624 | 8.4:-54330587 | None:intergenic |
| CAAAGACATCAACCATCTGA+TGG | 0.574777 | 8.4:+54330575 | MS.gene42749:CDS |
| GTTCCCAACTAATTAATGCA+AGG | 0.576421 | 8.4:+54329152 | MS.gene42749:CDS |
| AAACTGCTCTCCCCATCAGA+TGG | 0.584983 | 8.4:-54330686 | None:intergenic |
| GGAAGTCTCTGCCAGTTCCA+AGG | 0.587112 | 8.4:+54328749 | MS.gene42749:CDS |
| TACTTCCAATCGCAGGCACA+TGG | 0.589068 | 8.4:+54332169 | MS.gene42749:intron |
| GTCTCTGCCAGTTCCAAGGA+GGG | 0.594149 | 8.4:+54328753 | MS.gene42749:CDS |
| TCTTTCTGATAACAGTTCAG+TGG | 0.602262 | 8.4:+54330532 | MS.gene42749:CDS |
| CTCCTCAAGAAAGTCAGTCA+AGG | 0.612330 | 8.4:+54330022 | MS.gene42749:CDS |
| TGGAAGACTCGAGTTAGTGA+TGG | 0.613219 | 8.4:+54329184 | MS.gene42749:CDS |
| CAGAGATTACTCCTCATATG+CGG | 0.620861 | 8.4:+54332224 | MS.gene42749:CDS |
| AAGTTGTATAAGATTTCCGA+CGG | 0.622303 | 8.4:-54330751 | None:intergenic |
| AGTTCCAAGGAGGGTAAACA+GGG | 0.627018 | 8.4:+54328762 | MS.gene42749:CDS |
| GAAACAGCCAGTGGCCAAAG+TGG | 0.629869 | 8.4:+54329002 | MS.gene42749:CDS |
| AAGGAGTGGGAGCATTAAGA+CGG | 0.642469 | 8.4:-54333284 | None:intergenic |
| AGATGTAGAAGCCTTGATTG+TGG | 0.654920 | 8.4:-54330414 | None:intergenic |
| AAGACATCAACCATCTGATG+GGG | 0.669550 | 8.4:+54330577 | MS.gene42749:CDS |
| TCAGTACTATTGGGTTACTG+AGG | 0.675513 | 8.4:+54330973 | MS.gene42749:CDS |
| AGTCTCTGCCAGTTCCAAGG+AGG | 0.676674 | 8.4:+54328752 | MS.gene42749:CDS |
| AAGACATCGACCATCTGATG+GGG | 0.684383 | 8.4:+54330676 | MS.gene42749:CDS |
| GAGATTACTCCTCATATGCG+GGG | 0.688505 | 8.4:+54332226 | MS.gene42749:CDS |
| GGTAGAGATGAATAACACAA+AGG | 0.692382 | 8.4:+54328783 | MS.gene42749:CDS |
| GGAAGTTCTGAAACAGCCAG+TGG | 0.695203 | 8.4:+54328993 | MS.gene42749:CDS |
| TCAAGGCTTCTACATCTCAG+AGG | 0.717453 | 8.4:+54330420 | MS.gene42749:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAAATATTATAAAAA+TGG | - | chr8.4:54334703-54334722 | None:intergenic | 0.0% |
| !! | ATATAATATAAATTTGTATG+TGG | - | chr8.4:54331619-54331638 | None:intergenic | 10.0% |
| !! | CAAAAAAATTAAAAAAATTG+AGG | - | chr8.4:54329792-54329811 | None:intergenic | 10.0% |
| !! | TATTCATTATTGAAATTATT+TGG | - | chr8.4:54334219-54334238 | None:intergenic | 10.0% |
| !!! | AAATGACAATATTTTAAAAA+TGG | - | chr8.4:54334635-54334654 | None:intergenic | 10.0% |
| !!! | CTCAATTTTTTTAATTTTTT+TGG | + | chr8.4:54329790-54329809 | MS.gene42749:intron | 10.0% |
| !!! | TTTTTAATTTTTTTGGAATT+TGG | + | chr8.4:54329797-54329816 | MS.gene42749:intron | 10.0% |
| !! | AAACAAAAACAAAAACAAAA+TGG | - | chr8.4:54331068-54331087 | None:intergenic | 15.0% |
| !! | AAATATCAGGATAATAAATA+AGG | - | chr8.4:54334610-54334629 | None:intergenic | 15.0% |
| !! | ACAAAAATATATAAATGTTG+TGG | - | chr8.4:54330375-54330394 | None:intergenic | 15.0% |
| !! | ATAAAGCAAATAATGATATT+AGG | - | chr8.4:54335133-54335152 | None:intergenic | 15.0% |
| !! | ATGTAATATTATGTATCATA+TGG | - | chr8.4:54329636-54329655 | None:intergenic | 15.0% |
| !! | ATTAAATAAGAAAAAAGATC+TGG | - | chr8.4:54328902-54328921 | None:intergenic | 15.0% |
| !! | ATTATATTCTAACTAATATG+TGG | + | chr8.4:54333213-54333232 | MS.gene42749:intron | 15.0% |
| !! | ATTTCTAATTGTTAATTTAG+AGG | + | chr8.4:54329931-54329950 | MS.gene42749:intron | 15.0% |
| !! | CTCTATATATTATTCTATTA+TGG | - | chr8.4:54334971-54334990 | None:intergenic | 15.0% |
| !! | TAAAATTATCAGCAAAAAAA+TGG | - | chr8.4:54332384-54332403 | None:intergenic | 15.0% |
| !! | TCAATAATGAATAAAGATAA+AGG | + | chr8.4:54334226-54334245 | MS.gene42749:intron | 15.0% |
| !!! | CCAAAATATTTCTAATAAAT+TGG | + | chr8.4:54333403-54333422 | MS.gene42749:intron | 15.0% |
| !!! | CCAATTTATTAGAAATATTT+TGG | - | chr8.4:54333406-54333425 | None:intergenic | 15.0% |
| !!! | GAATAAATCACATTTTATTT+TGG | + | chr8.4:54331447-54331466 | MS.gene42749:intron | 15.0% |
| !!! | TTTAATAAAAGTACCTATTA+AGG | - | chr8.4:54332042-54332061 | None:intergenic | 15.0% |
| !!! | TTTATTACTTTTTTAAACGT+GGG | - | chr8.4:54331800-54331819 | None:intergenic | 15.0% |
| !!! | TTTTATTACTTTTTTAAACG+TGG | - | chr8.4:54331801-54331820 | None:intergenic | 15.0% |
| !! | AAAATTGCAAAGTAAAGAAA+TGG | + | chr8.4:54332896-54332915 | MS.gene42749:intron | 20.0% |
| !! | ACAGAACAATATATAAAGAA+AGG | - | chr8.4:54332326-54332345 | None:intergenic | 20.0% |
| !! | ATAATGATATTAGGATATGA+AGG | - | chr8.4:54335124-54335143 | None:intergenic | 20.0% |
| !! | ATCTTATACAACTTCATTAA+TGG | + | chr8.4:54330760-54330779 | MS.gene42749:CDS | 20.0% |
| !! | CAATTAATAAGAATTATGCT+TGG | - | chr8.4:54334916-54334935 | None:intergenic | 20.0% |
| !! | GATAGAGTTTAGAAAAATTA+GGG | - | chr8.4:54334890-54334909 | None:intergenic | 20.0% |
| !! | GTAAAAAAACAAAACAAAAG+TGG | + | chr8.4:54334990-54335009 | MS.gene42749:intron | 20.0% |
| !! | TCAATCAATCAAAAGATAAT+AGG | + | chr8.4:54334106-54334125 | MS.gene42749:intron | 20.0% |
| !! | TGAAACTGAAAAAGATAAAA+TGG | - | chr8.4:54333691-54333710 | None:intergenic | 20.0% |
| !! | TGATAGAGTTTAGAAAAATT+AGG | - | chr8.4:54334891-54334910 | None:intergenic | 20.0% |
| !! | TTATAAGAATGTATTAACCT+CGG | - | chr8.4:54334084-54334103 | None:intergenic | 20.0% |
| !! | TTATGAAAAATATTCCAGAA+AGG | + | chr8.4:54333817-54333836 | MS.gene42749:intron | 20.0% |
| !! | TTCATTAATGGAAAAATCTA+AGG | + | chr8.4:54330772-54330791 | MS.gene42749:CDS | 20.0% |
| !! | TTTAAAAATGGCAAAATATC+AGG | - | chr8.4:54334623-54334642 | None:intergenic | 20.0% |
| !! | TTTACTAATTCTATAATCAG+TGG | - | chr8.4:54331179-54331198 | None:intergenic | 20.0% |
| !!! | ACATTTATTTTGAAGAAAAG+AGG | + | chr8.4:54332640-54332659 | MS.gene42749:intron | 20.0% |
| !!! | ACTTCATTTTTAAATTTCAG+AGG | - | chr8.4:54330836-54330855 | None:intergenic | 20.0% |
| !!! | ATGTGATTTGTTGTTATTAA+TGG | + | chr8.4:54329954-54329973 | MS.gene42749:intron | 20.0% |
| !!! | CATATTTAAGTACTTTTCAT+TGG | + | chr8.4:54331979-54331998 | MS.gene42749:intron | 20.0% |
| !!! | CATTTATTTTGAAGAAAAGA+GGG | + | chr8.4:54332641-54332660 | MS.gene42749:intron | 20.0% |
| !!! | GTTTTATCAAAAACATTGTT+TGG | + | chr8.4:54334049-54334068 | MS.gene42749:intron | 20.0% |
| !!! | TAATACATAAATACTGACTT+AGG | + | chr8.4:54329715-54329734 | MS.gene42749:intron | 20.0% |
| !!! | TATTACTCATTTTTACAAGT+GGG | - | chr8.4:54331921-54331940 | None:intergenic | 20.0% |
| !!! | TGTGATTTGTTGTTATTAAT+GGG | + | chr8.4:54329955-54329974 | MS.gene42749:intron | 20.0% |
| !!! | TTATTCATGTTCACAATTTT+GGG | - | chr8.4:54331433-54331452 | None:intergenic | 20.0% |
| !!! | TTCAGATTGAAATTTGAAAT+TGG | + | chr8.4:54331026-54331045 | MS.gene42749:intron | 20.0% |
| !!! | TTTATTCATGTTCACAATTT+TGG | - | chr8.4:54331434-54331453 | None:intergenic | 20.0% |
| !!! | TTTTTATTTGCACTTGTATT+AGG | + | chr8.4:54333171-54333190 | MS.gene42749:intron | 20.0% |
| ! | AAAAATTTGCAGCTAATGTT+TGG | + | chr8.4:54330262-54330281 | MS.gene42749:intron | 25.0% |
| ! | AACTTAAATTCATGAGTTGT+AGG | - | chr8.4:54329372-54329391 | None:intergenic | 25.0% |
| ! | AATAACTTAGACTAACTTTG+AGG | + | chr8.4:54329599-54329618 | MS.gene42749:intron | 25.0% |
| ! | AGCTATTAACATCTAAAAGA+GGG | - | chr8.4:54332355-54332374 | None:intergenic | 25.0% |
| ! | ATAAAAGCAGATATATCTCA+AGG | - | chr8.4:54331227-54331246 | None:intergenic | 25.0% |
| ! | ATGAATAAAGATAAAGGCTT+AGG | + | chr8.4:54334232-54334251 | MS.gene42749:intron | 25.0% |
| ! | ATGCTATATATCAGTACTAT+TGG | + | chr8.4:54330963-54330982 | MS.gene42749:CDS | 25.0% |
| ! | ATTCTTATAACAAGCATCAT+AGG | + | chr8.4:54332782-54332801 | MS.gene42749:intron | 25.0% |
| ! | CAAGAACAAAAAAAATGAAG+AGG | - | chr8.4:54333957-54333976 | None:intergenic | 25.0% |
| ! | CAATATATAAAGAAAGGACA+AGG | - | chr8.4:54332320-54332339 | None:intergenic | 25.0% |
| ! | CATAGTTCTTATCAATATCA+TGG | - | chr8.4:54329044-54329063 | None:intergenic | 25.0% |
| ! | CTAAAATCTAAATCCATATC+AGG | + | chr8.4:54330446-54330465 | MS.gene42749:CDS | 25.0% |
| ! | GCTTTATCTTGTATTACATT+TGG | + | chr8.4:54330178-54330197 | MS.gene42749:intron | 25.0% |
| ! | GTAATAAAACGTGTATTACT+TGG | + | chr8.4:54331812-54331831 | MS.gene42749:intron | 25.0% |
| ! | GTAATAAAATGTGTACTACT+TGG | + | chr8.4:54331853-54331872 | MS.gene42749:intron | 25.0% |
| ! | GTTTCATATGTAAAGATAGT+GGG | + | chr8.4:54331955-54331974 | MS.gene42749:intron | 25.0% |
| ! | TATAGGAAAATAAGAACAGA+AGG | - | chr8.4:54331132-54331151 | None:intergenic | 25.0% |
| ! | TATCAAAAACATTGTTTGGT+AGG | + | chr8.4:54334053-54334072 | MS.gene42749:intron | 25.0% |
| ! | TATTACTTCTTTATGCAAGT+GGG | - | chr8.4:54331839-54331858 | None:intergenic | 25.0% |
| ! | TCATTAGTACCAATTATTAC+AGG | - | chr8.4:54329349-54329368 | None:intergenic | 25.0% |
| ! | TGCTATATATCAGTACTATT+GGG | + | chr8.4:54330964-54330983 | MS.gene42749:CDS | 25.0% |
| ! | TGTTTCATATGTAAAGATAG+TGG | + | chr8.4:54331954-54331973 | MS.gene42749:intron | 25.0% |
| ! | TTATTACTTCTTTATGCAAG+TGG | - | chr8.4:54331840-54331859 | None:intergenic | 25.0% |
| ! | TTGTGGAAATTATTCACTAA+TGG | - | chr8.4:54330358-54330377 | None:intergenic | 25.0% |
| !! | AAATCCTACAGCAATTTTAT+AGG | - | chr8.4:54331149-54331168 | None:intergenic | 25.0% |
| !! | CTAAAACTGTTTGTGATTTT+TGG | + | chr8.4:54335153-54335172 | MS.gene42749:intron | 25.0% |
| !! | TAAAACCTAACTTTTATAGC+TGG | - | chr8.4:54334035-54334054 | None:intergenic | 25.0% |
| !! | TAAGTTAGTCTAGAATAAAC+TGG | + | chr8.4:54329386-54329405 | MS.gene42749:intron | 25.0% |
| !! | TATTCATGTTCACAATTTTG+GGG | - | chr8.4:54331432-54331451 | None:intergenic | 25.0% |
| !! | TCGTAAGGTTTTCATTATTT+TGG | - | chr8.4:54332877-54332896 | None:intergenic | 25.0% |
| !! | TGTTTACAATTTTTCTTTCC+TGG | + | chr8.4:54328818-54328837 | MS.gene42749:intron | 25.0% |
| !! | TTTACTTTGCAATTTTCGTA+AGG | - | chr8.4:54332892-54332911 | None:intergenic | 25.0% |
| !! | TTTTCCTATAAAATTGCTGT+AGG | + | chr8.4:54331142-54331161 | MS.gene42749:intron | 25.0% |
| !!! | ACTCGTTTTTATATTCACTT+GGG | - | chr8.4:54332534-54332553 | None:intergenic | 25.0% |
| !!! | AGATTTTGGAATTTATCAAC+TGG | - | chr8.4:54333128-54333147 | None:intergenic | 25.0% |
| !!! | ATTTTGTCTCATTTGTTTCT+AGG | + | chr8.4:54332693-54332712 | MS.gene42749:intron | 25.0% |
| !!! | CTATTACTCATTTTTACAAG+TGG | - | chr8.4:54331922-54331941 | None:intergenic | 25.0% |
| !!! | CTTCATTTTTTTTGTTCTTG+AGG | + | chr8.4:54333957-54333976 | MS.gene42749:intron | 25.0% |
| !!! | TATTAATGGGTCATTTTATC+TGG | + | chr8.4:54329968-54329987 | MS.gene42749:intron | 25.0% |
| !!! | TCTTGTAGTCTTCTTTTTTA+GGG | - | chr8.4:54329502-54329521 | None:intergenic | 25.0% |
| !!! | TTCTTGTAGTCTTCTTTTTT+AGG | - | chr8.4:54329503-54329522 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTCAATTGTTCTA+TGG | + | chr8.4:54330097-54330116 | MS.gene42749:intron | 25.0% |
| !!! | TTTATTTTATCCTATCACGT+TGG | - | chr8.4:54334494-54334513 | None:intergenic | 25.0% |
| !!! | TTTCAGTTTTAGACAAACAA+GGG | - | chr8.4:54335022-54335041 | None:intergenic | 25.0% |
| !!! | TTTTGTTTAATGATCTATGC+AGG | - | chr8.4:54334287-54334306 | None:intergenic | 25.0% |
| !!! | TTTTTTCTCTGCTTATTTCT+TGG | + | chr8.4:54332429-54332448 | MS.gene42749:intron | 25.0% |
| AAAATGCAACAGTGCTAAAA+AGG | - | chr8.4:54331263-54331282 | None:intergenic | 30.0% | |
| AACCTTATCAGAAAAACGTA+AGG | - | chr8.4:54333306-54333325 | None:intergenic | 30.0% | |
| AAGACAATACATTAAGGATG+AGG | - | chr8.4:54332293-54332312 | None:intergenic | 30.0% | |
| AAGTTGTATAAGATTTCCGA+CGG | - | chr8.4:54330754-54330773 | None:intergenic | 30.0% | |
| ACTCAGGATAGAAATTACAA+AGG | - | chr8.4:54334543-54334562 | None:intergenic | 30.0% | |
| ACTTGTATTAGGTTCAAACA+TGG | + | chr8.4:54333182-54333201 | MS.gene42749:intron | 30.0% | |
| AGAAAAAAGACTAGTGATGT+TGG | - | chr8.4:54332417-54332436 | None:intergenic | 30.0% | |
| AGAAATTACAAAGGAAAGTC+AGG | - | chr8.4:54334534-54334553 | None:intergenic | 30.0% | |
| AGACAATACATTAAGGATGA+GGG | - | chr8.4:54332292-54332311 | None:intergenic | 30.0% | |
| ATATAAAGCTGGATAGAGAT+AGG | - | chr8.4:54334829-54334848 | None:intergenic | 30.0% | |
| ATCATAGTGCACAATGAAAA+CGG | - | chr8.4:54334137-54334156 | None:intergenic | 30.0% | |
| ATGACAACTGAATTATTCTC+AGG | - | chr8.4:54330638-54330657 | None:intergenic | 30.0% | |
| CAGTTGAATTCAGTTGAAAT+GGG | - | chr8.4:54333099-54333118 | None:intergenic | 30.0% | |
| CATTTCAACTGAATTCAACT+GGG | + | chr8.4:54333098-54333117 | MS.gene42749:intron | 30.0% | |
| CTTATTACTTATACGAGCAT+AGG | - | chr8.4:54330213-54330232 | None:intergenic | 30.0% | |
| CTTCATATTCAACTAAGCAT+AGG | - | chr8.4:54333529-54333548 | None:intergenic | 30.0% | |
| GAAAAATGAGACACAAGAAA+AGG | - | chr8.4:54328954-54328973 | None:intergenic | 30.0% | |
| GAGCTATTAACATCTAAAAG+AGG | - | chr8.4:54332356-54332375 | None:intergenic | 30.0% | |
| GATAGAGATAGGATATGATA+AGG | - | chr8.4:54334818-54334837 | None:intergenic | 30.0% | |
| GCCAGTTGAAAATTAAAGAT+GGG | - | chr8.4:54333077-54333096 | None:intergenic | 30.0% | |
| GGACAAAAGACAATACATTA+AGG | - | chr8.4:54332299-54332318 | None:intergenic | 30.0% | |
| GTAATTTCTATCCTGAGTAT+AGG | + | chr8.4:54334545-54334564 | MS.gene42749:intron | 30.0% | |
| GTTATGCTCAGTATATTTCT+TGG | + | chr8.4:54330305-54330324 | MS.gene42749:intron | 30.0% | |
| TAAAAATTACTTCCAATCGC+AGG | + | chr8.4:54332162-54332181 | MS.gene42749:intron | 30.0% | |
| TAAAGAAATGGATCTACAAC+TGG | + | chr8.4:54332908-54332927 | MS.gene42749:intron | 30.0% | |
| TAGTTCCAGCTATAAAAGTT+AGG | + | chr8.4:54334027-54334046 | MS.gene42749:intron | 30.0% | |
| TATACAAGAGATCAAATGCT+TGG | + | chr8.4:54332748-54332767 | MS.gene42749:intron | 30.0% | |
| TATTGATATTATTCACCACC+AGG | - | chr8.4:54328839-54328858 | None:intergenic | 30.0% | |
| TCTTGAATAATGTTGATCAC+AGG | + | chr8.4:54332977-54332996 | MS.gene42749:intron | 30.0% | |
| TTACATTCATCGTCTATACT+TGG | - | chr8.4:54330917-54330936 | None:intergenic | 30.0% | |
| TTACCCAAGAATCCTATATT+GGG | + | chr8.4:54331405-54331424 | MS.gene42749:intron | 30.0% | |
| TTTACCCAAGAATCCTATAT+TGG | + | chr8.4:54331404-54331423 | MS.gene42749:intron | 30.0% | |
| ! | AACTTTTATAGCTGGAACTA+AGG | - | chr8.4:54334027-54334046 | None:intergenic | 30.0% |
| ! | AATGATTTTCTAATCCCATC+AGG | - | chr8.4:54334587-54334606 | None:intergenic | 30.0% |
| ! | ACAAGTTAGCCTGTAATAAT+TGG | + | chr8.4:54329337-54329356 | MS.gene42749:intron | 30.0% |
| ! | ACAGACATACTGATTGATAT+AGG | + | chr8.4:54333379-54333398 | MS.gene42749:intron | 30.0% |
| ! | GAACAAAATCAGCAAGATTT+TGG | - | chr8.4:54333142-54333161 | None:intergenic | 30.0% |
| ! | GGTTGATTTATTTGGTTGAT+TGG | + | chr8.4:54330078-54330097 | MS.gene42749:intron | 30.0% |
| ! | TATTGACTGCAAGATATGAT+TGG | - | chr8.4:54331367-54331386 | None:intergenic | 30.0% |
| ! | TGGAATGAATTTTACTGTTC+AGG | + | chr8.4:54333233-54333252 | MS.gene42749:intron | 30.0% |
| ! | TTACAATTTTTCTTTCCTGG+TGG | + | chr8.4:54328821-54328840 | MS.gene42749:intron | 30.0% |
| ! | TTTTAGTGGTTGAAACTTGA+GGG | + | chr8.4:54331280-54331299 | MS.gene42749:intron | 30.0% |
| ! | TTTTCTGATAAGGTTTCTCA+AGG | + | chr8.4:54333311-54333330 | MS.gene42749:CDS | 30.0% |
| !! | ATAAATACTGACTTAGGTGA+GGG | + | chr8.4:54329721-54329740 | MS.gene42749:intron | 30.0% |
| !! | CACTCGTTTTTATATTCACT+TGG | - | chr8.4:54332535-54332554 | None:intergenic | 30.0% |
| !! | GCTTATTTCTTGGATTTTAC+AGG | + | chr8.4:54332439-54332458 | MS.gene42749:intron | 30.0% |
| !! | GTACATTTTGTCTGTTTCTT+TGG | + | chr8.4:54329285-54329304 | MS.gene42749:intron | 30.0% |
| !! | GTCTCATTTTTCTTCCTTTT+AGG | + | chr8.4:54328962-54328981 | MS.gene42749:intron | 30.0% |
| !! | TCCCATCTTTAATTTTCAAC+TGG | + | chr8.4:54333073-54333092 | MS.gene42749:intron | 30.0% |
| !! | TCTCATTTGTTTCTAGGTAA+AGG | + | chr8.4:54332699-54332718 | MS.gene42749:intron | 30.0% |
| !! | TTTTTAGTGGTTGAAACTTG+AGG | + | chr8.4:54331279-54331298 | MS.gene42749:intron | 30.0% |
| !!! | AACTGTTTGTGATTTTTGGT+AGG | + | chr8.4:54335157-54335176 | MS.gene42749:intron | 30.0% |
| !!! | GTTTCAGTTTTAGACAAACA+AGG | - | chr8.4:54335023-54335042 | None:intergenic | 30.0% |
| !!! | TAGTTGGTTTTGATTTGTTC+TGG | - | chr8.4:54330472-54330491 | None:intergenic | 30.0% |
| !!! | TTAACTTACTGCTGATTTTC+AGG | + | chr8.4:54329103-54329122 | MS.gene42749:intron | 30.0% |
| AAAAATTAGGGTCCGTTTGA+TGG | - | chr8.4:54334878-54334897 | None:intergenic | 35.0% | |
| AAAGACATCAACCATCTGAT+GGG | + | chr8.4:54330576-54330595 | MS.gene42749:CDS | 35.0% | |
| AAATATTCCAGAAAGGAGCT+CGG | + | chr8.4:54333824-54333843 | MS.gene42749:intron | 35.0% | |
| AACAAAATGGATGTCTTCTG+TGG | - | chr8.4:54331055-54331074 | None:intergenic | 35.0% | |
| AACTAGTACAATTGCCTCTA+AGG | + | chr8.4:54330487-54330506 | MS.gene42749:CDS | 35.0% | |
| AAGAGATCAAATGCTTGGAA+TGG | + | chr8.4:54332753-54332772 | MS.gene42749:intron | 35.0% | |
| AAGTAATCTTACTTGTGCCA+TGG | + | chr8.4:54331529-54331548 | MS.gene42749:intron | 35.0% | |
| AAGTACGCAATTACTATCAG+AGG | - | chr8.4:54329262-54329281 | None:intergenic | 35.0% | |
| ACAATGGTAGTTTCCTAACA+AGG | - | chr8.4:54332110-54332129 | None:intergenic | 35.0% | |
| AGTTACTGAAGAATACAAGC+AGG | - | chr8.4:54329854-54329873 | None:intergenic | 35.0% | |
| ATAAAGATAAAGGCTTAGGC+AGG | + | chr8.4:54334236-54334255 | MS.gene42749:intron | 35.0% | |
| ATATCTGACAGTGACATTGT+TGG | + | chr8.4:54332496-54332515 | MS.gene42749:CDS | 35.0% | |
| ATCAGAAAAACGTAAGGAGT+GGG | - | chr8.4:54333300-54333319 | None:intergenic | 35.0% | |
| ATGATAATCCCTGCAAGATT+GGG | - | chr8.4:54331323-54331342 | None:intergenic | 35.0% | |
| ATGCTAACTGCAATATTTGC+AGG | + | chr8.4:54333732-54333751 | MS.gene42749:intron | 35.0% | |
| ATTCATCGTCTATACTTGGT+AGG | - | chr8.4:54330913-54330932 | None:intergenic | 35.0% | |
| CAAGGAAAATGGTGAAGTTA+GGG | + | chr8.4:54330877-54330896 | MS.gene42749:CDS | 35.0% | |
| CAATATCATGGCTTCTTACT+TGG | - | chr8.4:54329032-54329051 | None:intergenic | 35.0% | |
| CAGAGGATCTTAACAAAATG+TGG | - | chr8.4:54330819-54330838 | None:intergenic | 35.0% | |
| CATTATGATTATGCCCAATG+AGG | - | chr8.4:54331575-54331594 | None:intergenic | 35.0% | |
| CCAAATAAATCAACCAGAAC+AGG | - | chr8.4:54330073-54330092 | None:intergenic | 35.0% | |
| CCAATGGCAATACACTAATA+AGG | - | chr8.4:54332008-54332027 | None:intergenic | 35.0% | |
| CCAGTTGAATTCAGTTGAAA+TGG | - | chr8.4:54333100-54333119 | None:intergenic | 35.0% | |
| CCATTTCAACTGAATTCAAC+TGG | + | chr8.4:54333097-54333116 | MS.gene42749:intron | 35.0% | |
| CCTTATTAGTGTATTGCCAT+TGG | + | chr8.4:54332005-54332024 | MS.gene42749:intron | 35.0% | |
| CCTTGAGAATCTGCAAATTA+AGG | - | chr8.4:54330862-54330881 | None:intergenic | 35.0% | |
| GCTCCTTGCATTAATTAGTT+GGG | - | chr8.4:54329158-54329177 | None:intergenic | 35.0% | |
| GGCATAATCATAATGCTAAC+AGG | + | chr8.4:54331580-54331599 | MS.gene42749:intron | 35.0% | |
| GGCCAGTTGAAAATTAAAGA+TGG | - | chr8.4:54333078-54333097 | None:intergenic | 35.0% | |
| GGGTTAGAAATTATCCTGAT+GGG | + | chr8.4:54334570-54334589 | MS.gene42749:intron | 35.0% | |
| GGTAGAGATGAATAACACAA+AGG | + | chr8.4:54328783-54328802 | MS.gene42749:CDS | 35.0% | |
| GTTATGAAGTTTCACAGATC+AGG | + | chr8.4:54333654-54333673 | MS.gene42749:intron | 35.0% | |
| GTTCCCAACTAATTAATGCA+AGG | + | chr8.4:54329152-54329171 | MS.gene42749:CDS | 35.0% | |
| TAAAGTTGCTCGTTAGAGTT+TGG | - | chr8.4:54334357-54334376 | None:intergenic | 35.0% | |
| TACAACTGGAGAAATAGACA+AGG | + | chr8.4:54332922-54332941 | MS.gene42749:intron | 35.0% | |
| TACCCAAGAATCCTATATTG+GGG | + | chr8.4:54331406-54331425 | MS.gene42749:intron | 35.0% | |
| TAGGGCTTGAACTGTATTAA+TGG | - | chr8.4:54329484-54329503 | None:intergenic | 35.0% | |
| TATCAGAAAAACGTAAGGAG+TGG | - | chr8.4:54333301-54333320 | None:intergenic | 35.0% | |
| TATGATAATCCCTGCAAGAT+TGG | - | chr8.4:54331324-54331343 | None:intergenic | 35.0% | |
| TCAAGGAAAATGGTGAAGTT+AGG | + | chr8.4:54330876-54330895 | MS.gene42749:CDS | 35.0% | |
| TCATTGTGCACTATGATAGT+GGG | + | chr8.4:54334140-54334159 | MS.gene42749:intron | 35.0% | |
| TCCAAATAAGCACAACTTTG+CGG | - | chr8.4:54328876-54328895 | None:intergenic | 35.0% | |
| TCCAGTACAAGTCAAATCAA+CGG | - | chr8.4:54333886-54333905 | None:intergenic | 35.0% | |
| TCTTTCTGATAACAGTTCAG+TGG | + | chr8.4:54330532-54330551 | MS.gene42749:CDS | 35.0% | |
| TGCTAACTGCAATATTTGCA+GGG | + | chr8.4:54333733-54333752 | MS.gene42749:intron | 35.0% | |
| TGCTCCTTGCATTAATTAGT+TGG | - | chr8.4:54329159-54329178 | None:intergenic | 35.0% | |
| TGTTGTTAAGACCACAATCA+AGG | + | chr8.4:54330403-54330422 | MS.gene42749:CDS | 35.0% | |
| TTAATGCAAGGAGCAATCTA+TGG | + | chr8.4:54329164-54329183 | MS.gene42749:CDS | 35.0% | |
| TTACAAAGGAAAGTCAGGAT+AGG | - | chr8.4:54334529-54334548 | None:intergenic | 35.0% | |
| TTAGAGGCAATTGTACTAGT+TGG | - | chr8.4:54330488-54330507 | None:intergenic | 35.0% | |
| TTCATTGTGCACTATGATAG+TGG | + | chr8.4:54334139-54334158 | MS.gene42749:intron | 35.0% | |
| TTCTATCCTGAGTATAGGTT+GGG | + | chr8.4:54334550-54334569 | MS.gene42749:intron | 35.0% | |
| TTGCAGATTCTCAAGGAAAA+TGG | + | chr8.4:54330866-54330885 | MS.gene42749:intron | 35.0% | |
| TTGTTAGGAAACTACCATTG+TGG | + | chr8.4:54332109-54332128 | MS.gene42749:intron | 35.0% | |
| TTTCTATCCTGAGTATAGGT+TGG | + | chr8.4:54334549-54334568 | MS.gene42749:intron | 35.0% | |
| ! | AATTTTTCTTCCTCCAATGG+AGG | - | chr8.4:54331714-54331733 | None:intergenic | 35.0% |
| ! | ACTTCCAGCATTTTCCTAAA+AGG | - | chr8.4:54328979-54328998 | None:intergenic | 35.0% |
| ! | ACTTTGTTTATTGCCTGTTC+TGG | + | chr8.4:54330057-54330076 | MS.gene42749:intron | 35.0% |
| ! | ATAGCTGAAATCCTTTTACC+AGG | + | chr8.4:54333985-54334004 | MS.gene42749:intron | 35.0% |
| ! | ATTTTCACAGCTTGAACACA+TGG | + | chr8.4:54333487-54333506 | MS.gene42749:intron | 35.0% |
| ! | ATTTTTCTTCCTCCAATGGA+GGG | - | chr8.4:54331713-54331732 | None:intergenic | 35.0% |
| ! | CCTGTTCTGGTTGATTTATT+TGG | + | chr8.4:54330070-54330089 | MS.gene42749:intron | 35.0% |
| ! | CTCAATTTTTCTTCCTCCAA+TGG | - | chr8.4:54331717-54331736 | None:intergenic | 35.0% |
| ! | CTCCTTACGTTTTTCTGATA+AGG | + | chr8.4:54333301-54333320 | MS.gene42749:CDS | 35.0% |
| ! | GTATAGCAAGTTTTCCAGTA+TGG | + | chr8.4:54329413-54329432 | MS.gene42749:intron | 35.0% |
| ! | GTTAGTCTAGAATAAACTGG+AGG | + | chr8.4:54329389-54329408 | MS.gene42749:intron | 35.0% |
| ! | TAGCTGCAAATTTTTCTGAC+AGG | - | chr8.4:54330257-54330276 | None:intergenic | 35.0% |
| ! | TGGGTTAGAAATTATCCTGA+TGG | + | chr8.4:54334569-54334588 | MS.gene42749:intron | 35.0% |
| ! | TTGATTGTGGTCTTAACAAC+AGG | - | chr8.4:54330404-54330423 | None:intergenic | 35.0% |
| !! | AACTTTTTCCTCATCCTTAG+AGG | - | chr8.4:54330504-54330523 | None:intergenic | 35.0% |
| !! | ATACTTTGAGGCCAACAAAA+GGG | - | chr8.4:54332582-54332601 | None:intergenic | 35.0% |
| !! | ATGTCTTTGACTTGCATCAT+TGG | - | chr8.4:54330564-54330583 | None:intergenic | 35.0% |
| !! | CATAAATACTGACTTAGGTG+AGG | + | chr8.4:54329720-54329739 | MS.gene42749:intron | 35.0% |
| !! | CCTTAATTTGCAGATTCTCA+AGG | + | chr8.4:54330859-54330878 | MS.gene42749:intron | 35.0% |
| !! | TAGCACTGTTGCATTTTTAG+TGG | + | chr8.4:54331266-54331285 | MS.gene42749:intron | 35.0% |
| !! | TCTTCAAGTTGTAAAACCGA+AGG | + | chr8.4:54329308-54329327 | MS.gene42749:intron | 35.0% |
| !! | TCTTCCTTTTAGGAAAATGC+TGG | + | chr8.4:54328972-54328991 | MS.gene42749:intron | 35.0% |
| AAAGACATCGACCATCTGAT+GGG | + | chr8.4:54330675-54330694 | MS.gene42749:CDS | 40.0% | |
| AAATAAGCACAACTTTGCGG+AGG | - | chr8.4:54328873-54328892 | None:intergenic | 40.0% | |
| AAGACATCAACCATCTGATG+GGG | + | chr8.4:54330577-54330596 | MS.gene42749:CDS | 40.0% | |
| AAGGAAAGTCAGGATAGGAT+AGG | - | chr8.4:54334524-54334543 | None:intergenic | 40.0% | |
| AAGGAACGGGCAACTATATA+AGG | + | chr8.4:54331745-54331764 | MS.gene42749:intron | 40.0% | |
| AATAGACAAGGAGCAGAAGT+AGG | + | chr8.4:54332934-54332953 | MS.gene42749:intron | 40.0% | |
| ACTGTCAGATATAGTGTCTC+GGG | - | chr8.4:54332488-54332507 | None:intergenic | 40.0% | |
| AGAGAGATAGAAAGAGAGAG+AGG | + | chr8.4:54329537-54329556 | MS.gene42749:intron | 40.0% | |
| AGAGATTACTCCTCATATGC+GGG | + | chr8.4:54332225-54332244 | MS.gene42749:CDS | 40.0% | |
| AGAGGTTACAACATTCACAG+AGG | - | chr8.4:54333939-54333958 | None:intergenic | 40.0% | |
| AGATGTAGAAGCCTTGATTG+TGG | - | chr8.4:54330417-54330436 | None:intergenic | 40.0% | |
| ATCCTATCCTGACCATCAAA+CGG | + | chr8.4:54334863-54334882 | MS.gene42749:intron | 40.0% | |
| ATTGGTCAACTGGCTAATTG+AGG | + | chr8.4:54332252-54332271 | MS.gene42749:CDS | 40.0% | |
| CAAAGACATCAACCATCTGA+TGG | + | chr8.4:54330575-54330594 | MS.gene42749:CDS | 40.0% | |
| CACTGTCAGATATAGTGTCT+CGG | - | chr8.4:54332489-54332508 | None:intergenic | 40.0% | |
| CAGAGATTACTCCTCATATG+CGG | + | chr8.4:54332224-54332243 | MS.gene42749:CDS | 40.0% | |
| CAGTACAAGTCAAATCAACG+GGG | - | chr8.4:54333884-54333903 | None:intergenic | 40.0% | |
| CCAAAAGTCCTCATACTTTG+AGG | - | chr8.4:54332594-54332613 | None:intergenic | 40.0% | |
| CCAGTACAAGTCAAATCAAC+GGG | - | chr8.4:54333885-54333904 | None:intergenic | 40.0% | |
| CCATTTAAGGAGTCCTTGTT+AGG | + | chr8.4:54332094-54332113 | MS.gene42749:intron | 40.0% | |
| CCTAACAAGGACTCCTTAAA+TGG | - | chr8.4:54332097-54332116 | None:intergenic | 40.0% | |
| CGGCAAAATCATTGAAACCA+TGG | - | chr8.4:54331549-54331568 | None:intergenic | 40.0% | |
| GAAAAATTGAGTCCCCGTTA+AGG | + | chr8.4:54331726-54331745 | MS.gene42749:intron | 40.0% | |
| GAAAGTCAGTCAAGGTATGT+TGG | + | chr8.4:54330030-54330049 | MS.gene42749:intron | 40.0% | |
| GGAGTCATTGAGTCCTTAAT+AGG | + | chr8.4:54332026-54332045 | MS.gene42749:intron | 40.0% | |
| GGCAGGATATGATATAAAGC+TGG | - | chr8.4:54334840-54334859 | None:intergenic | 40.0% | |
| GTCAGGATAGGATAGGAAAA+TGG | - | chr8.4:54334517-54334536 | None:intergenic | 40.0% | |
| TAAGGACTCAATGACTCCAA+TGG | - | chr8.4:54332024-54332043 | None:intergenic | 40.0% | |
| TATAAGTGATGTGTCACGTG+AGG | + | chr8.4:54332070-54332089 | MS.gene42749:intron | 40.0% | |
| TATAGTTGCCCGTTCCTTAA+CGG | - | chr8.4:54331743-54331762 | None:intergenic | 40.0% | |
| TCAGTACTATTGGGTTACTG+AGG | + | chr8.4:54330973-54330992 | MS.gene42749:CDS | 40.0% | |
| TCCGCAAAGTTGTGCTTATT+TGG | + | chr8.4:54328872-54328891 | MS.gene42749:intron | 40.0% | |
| TCTTACTTGGAAGACCACTT+TGG | - | chr8.4:54329019-54329038 | None:intergenic | 40.0% | |
| TGAAACTTGAGGGTTATGTC+TGG | + | chr8.4:54331290-54331309 | MS.gene42749:intron | 40.0% | |
| TGAAATTCCACAAAGCTGCT+GGG | + | chr8.4:54333774-54333793 | MS.gene42749:intron | 40.0% | |
| TGAGAATCCAACCTGGTAAA+AGG | - | chr8.4:54333999-54334018 | None:intergenic | 40.0% | |
| TTCTAACCCAACCTATACTC+AGG | - | chr8.4:54334559-54334578 | None:intergenic | 40.0% | |
| TTGAAATGACTTCTCACCCT+TGG | - | chr8.4:54332620-54332639 | None:intergenic | 40.0% | |
| ! | ACAGGATTGTTTTCCATCTC+TGG | + | chr8.4:54332995-54333014 | MS.gene42749:intron | 40.0% |
| ! | CCTCAAAGTATGAGGACTTT+TGG | + | chr8.4:54332591-54332610 | MS.gene42749:CDS | 40.0% |
| ! | CTGAAATCCTTTTACCAGGT+TGG | + | chr8.4:54333989-54334008 | MS.gene42749:intron | 40.0% |
| ! | TACAATTGCCTCTAAGGATG+AGG | + | chr8.4:54330493-54330512 | MS.gene42749:CDS | 40.0% |
| ! | TACCTTGACTGACTTTCTTG+AGG | - | chr8.4:54330027-54330046 | None:intergenic | 40.0% |
| ! | TTTGTTGGCCTCAAAGTATG+AGG | + | chr8.4:54332583-54332602 | MS.gene42749:CDS | 40.0% |
| !! | AATATCACGGTGCCACATTA+AGG | + | chr8.4:54334391-54334410 | MS.gene42749:intron | 40.0% |
| !! | ATATCACGGTGCCACATTAA+GGG | + | chr8.4:54334392-54334411 | MS.gene42749:intron | 40.0% |
| !! | CATACTTTGAGGCCAACAAA+AGG | - | chr8.4:54332583-54332602 | None:intergenic | 40.0% |
| !! | GCTAACTTGTTACACTCCTT+CGG | - | chr8.4:54329327-54329346 | None:intergenic | 40.0% |
| !! | TCTCTAAGAGCATCTCCAAT+GGG | + | chr8.4:54331650-54331669 | MS.gene42749:intron | 40.0% |
| !! | TGATTTGTTCTGGCCTGATA+TGG | - | chr8.4:54330462-54330481 | None:intergenic | 40.0% |
| !! | TGGTCTTACATCCCTTTTGT+TGG | + | chr8.4:54332568-54332587 | MS.gene42749:CDS | 40.0% |
| !!! | TTTTCAGGTAAGCTGACAAC+AGG | + | chr8.4:54329118-54329137 | MS.gene42749:intron | 40.0% |
| AAAGCGAGTAGAGATGGAGT+AGG | + | chr8.4:54335059-54335078 | MS.gene42749:intron | 45.0% | |
| AAATGGTGAAGTTAGGGAGC+AGG | + | chr8.4:54330883-54330902 | MS.gene42749:CDS | 45.0% | |
| AAGACATCGACCATCTGATG+GGG | + | chr8.4:54330676-54330695 | MS.gene42749:CDS | 45.0% | |
| AAGTAGTGGTGTCCATGATG+GGG | - | chr8.4:54333621-54333640 | None:intergenic | 45.0% | |
| ACGAGTGAGATGCAGTTAGT+TGG | + | chr8.4:54332548-54332567 | MS.gene42749:CDS | 45.0% | |
| AGAGAGAAAGCGAGTAGAGA+TGG | + | chr8.4:54335053-54335072 | MS.gene42749:intron | 45.0% | |
| AGTTCCAAGGAGGGTAAACA+GGG | + | chr8.4:54328762-54328781 | MS.gene42749:CDS | 45.0% | |
| ATAAGGACTCTCTCTCTCCT+GGG | + | chr8.4:54331762-54331781 | MS.gene42749:intron | 45.0% | |
| ATAGTTGCCCGTTCCTTAAC+GGG | - | chr8.4:54331742-54331761 | None:intergenic | 45.0% | |
| ATTGAGTCCCCGTTAAGGAA+CGG | + | chr8.4:54331731-54331750 | MS.gene42749:intron | 45.0% | |
| CAAAGACATCGACCATCTGA+TGG | + | chr8.4:54330674-54330693 | MS.gene42749:CDS | 45.0% | |
| CAAGAAAAAGTTCCAGCCGT+CGG | + | chr8.4:54330735-54330754 | MS.gene42749:CDS | 45.0% | |
| CACTGCAAATAACCCCATCA+TGG | + | chr8.4:54333606-54333625 | MS.gene42749:intron | 45.0% | |
| CATCAAACGCACCCTTAATG+TGG | - | chr8.4:54334406-54334425 | None:intergenic | 45.0% | |
| CTCCTCAAGAAAGTCAGTCA+AGG | + | chr8.4:54330022-54330041 | MS.gene42749:CDS | 45.0% | |
| CTGAAATTCCACAAAGCTGC+TGG | + | chr8.4:54333773-54333792 | MS.gene42749:intron | 45.0% | |
| CTGACTTTCTTGAGGAGACT+TGG | - | chr8.4:54330019-54330038 | None:intergenic | 45.0% | |
| GAAGTAGTGGTGTCCATGAT+GGG | - | chr8.4:54333622-54333641 | None:intergenic | 45.0% | |
| GAAGTCATCCCAATCTTGCA+GGG | + | chr8.4:54331312-54331331 | MS.gene42749:intron | 45.0% | |
| GAGATTACTCCTCATATGCG+GGG | + | chr8.4:54332226-54332245 | MS.gene42749:CDS | 45.0% | |
| GATTATGCCCAATGAGGAAG+CGG | - | chr8.4:54331569-54331588 | None:intergenic | 45.0% | |
| GGAGTGGTCCTTGTTAAGTA+AGG | - | chr8.4:54331680-54331699 | None:intergenic | 45.0% | |
| GGCCCCAATATAGGATTCTT+GGG | - | chr8.4:54331411-54331430 | None:intergenic | 45.0% | |
| GGCTGCACAATCAGATATGA+AGG | + | chr8.4:54333332-54333351 | MS.gene42749:CDS | 45.0% | |
| GTTTGATGCACCAACGTGAT+AGG | + | chr8.4:54334481-54334500 | MS.gene42749:intron | 45.0% | |
| TATAAGGACTCTCTCTCTCC+TGG | + | chr8.4:54331761-54331780 | MS.gene42749:intron | 45.0% | |
| TCAAGGCTTCTACATCTCAG+AGG | + | chr8.4:54330420-54330439 | MS.gene42749:CDS | 45.0% | |
| TCTCTCTCCTGGGTAACTAA+CGG | + | chr8.4:54331772-54331791 | MS.gene42749:intron | 45.0% | |
| TGAAGTAGTGGTGTCCATGA+TGG | - | chr8.4:54333623-54333642 | None:intergenic | 45.0% | |
| TGATCAAGATGGACCAGAGA+TGG | - | chr8.4:54333011-54333030 | None:intergenic | 45.0% | |
| TGATGGTCAGGATAGGATAG+AGG | - | chr8.4:54334861-54334880 | None:intergenic | 45.0% | |
| TGGAAGACTCGAGTTAGTGA+TGG | + | chr8.4:54329184-54329203 | MS.gene42749:CDS | 45.0% | |
| TGGGAAGGGAAAGTTAAGAG+TGG | + | chr8.4:54333793-54333812 | MS.gene42749:intron | 45.0% | |
| TGGGGAGAGCAGTTTGAAAA+CGG | + | chr8.4:54330694-54330713 | MS.gene42749:CDS | 45.0% | |
| TGTATAAGATTTCCGACGGC+TGG | - | chr8.4:54330750-54330769 | None:intergenic | 45.0% | |
| TGTCACGTGAGGTCCATTTA+AGG | + | chr8.4:54332081-54332100 | MS.gene42749:intron | 45.0% | |
| TTGTTTGGTAGGAAACACCG+AGG | + | chr8.4:54334064-54334083 | MS.gene42749:intron | 45.0% | |
| ! | ATGAGGACTTTTGGCATCCA+AGG | + | chr8.4:54332600-54332619 | MS.gene42749:CDS | 45.0% |
| ! | CACATTAAGGGTGCGTTTGA+TGG | + | chr8.4:54334404-54334423 | MS.gene42749:intron | 45.0% |
| ! | TGAGGACTTTTGGCATCCAA+GGG | + | chr8.4:54332601-54332620 | MS.gene42749:CDS | 45.0% |
| ! | TGCAGTTAGAGCATCCACAA+TGG | - | chr8.4:54332126-54332145 | None:intergenic | 45.0% |
| ! | TGCGTTTGATGGTCAGGATA+GGG | + | chr8.4:54334415-54334434 | MS.gene42749:intron | 45.0% |
| !! | AAGGAGTGGGAGCATTAAGA+CGG | - | chr8.4:54333287-54333306 | None:intergenic | 45.0% |
| !! | CACTATGATAGTGGGAAGGA+TGG | + | chr8.4:54334148-54334167 | MS.gene42749:intron | 45.0% |
| !! | CCCGTTGATTTGACTTGTAC+TGG | + | chr8.4:54333882-54333901 | MS.gene42749:intron | 45.0% |
| !! | CTCTAAGAGCATCTCCAATG+GGG | + | chr8.4:54331651-54331670 | MS.gene42749:intron | 45.0% |
| !! | CTCTCTAAGAGCATCTCCAA+TGG | + | chr8.4:54331649-54331668 | MS.gene42749:intron | 45.0% |
| !! | GATTTTGCCGCTTCCTCATT+GGG | + | chr8.4:54331559-54331578 | MS.gene42749:intron | 45.0% |
| !! | GGTCATTTTATCTGGCGTGT+AGG | + | chr8.4:54329976-54329995 | MS.gene42749:intron | 45.0% |
| !! | TCTAAGAGCATCTCCAATGG+GGG | + | chr8.4:54331652-54331671 | MS.gene42749:intron | 45.0% |
| !! | TGATTTTGCCGCTTCCTCAT+TGG | + | chr8.4:54331558-54331577 | MS.gene42749:intron | 45.0% |
| !! | TGTGCACTATGATAGTGGGA+AGG | + | chr8.4:54334144-54334163 | MS.gene42749:intron | 45.0% |
| !!! | CAATTTTGGGGCCCCAATAT+AGG | - | chr8.4:54331420-54331439 | None:intergenic | 45.0% |
| !!! | CGTGCATGCTTTTGAAGTAG+TGG | - | chr8.4:54333635-54333654 | None:intergenic | 45.0% |
| !! | AAAAAAATTAAAAAAATTGA+GGG | - | chr8.4:54329791-54329810 | None:intergenic | 5.0% |
| !! | CTAATAAAAAAATAAAATAA+AGG | + | chr8.4:54334261-54334280 | MS.gene42749:intron | 5.0% |
| !!! | ATTTTTTTAATAAAATATCA+CGG | + | chr8.4:54334315-54334334 | MS.gene42749:intron | 5.0% |
| !!! | TTCAATAATATTTTTTTTTT+TGG | + | chr8.4:54334190-54334209 | MS.gene42749:intron | 5.0% |
| AAACTGCTCTCCCCATCAGA+TGG | - | chr8.4:54330689-54330708 | None:intergenic | 50.0% | |
| AACGAAGCTCCCTTTATCGC+CGG | - | chr8.4:54335087-54335106 | None:intergenic | 50.0% | |
| ACCAATACTCCCCGCATATG+AGG | - | chr8.4:54332238-54332257 | None:intergenic | 50.0% | |
| AGTAGAGATGGAGTAGGCAC+CGG | + | chr8.4:54335065-54335084 | MS.gene42749:intron | 50.0% | |
| ATACTGCACTCCCCATCAGA+TGG | - | chr8.4:54330590-54330609 | None:intergenic | 50.0% | |
| ATTCCACAAAGCTGCTGGGA+AGG | + | chr8.4:54333778-54333797 | MS.gene42749:intron | 50.0% | |
| ATTCCAGAAAGGAGCTCGGT+GGG | + | chr8.4:54333828-54333847 | MS.gene42749:intron | 50.0% | |
| CAACGGGGAAGTCTATCCAA+CGG | - | chr8.4:54333869-54333888 | None:intergenic | 50.0% | |
| CAGTTCCAAGGAGGGTAAAC+AGG | + | chr8.4:54328761-54328780 | MS.gene42749:CDS | 50.0% | |
| CTCCAATGGAGGGTCCTTAA+CGG | - | chr8.4:54331703-54331722 | None:intergenic | 50.0% | |
| CTCTCTCCTGGGTAACTAAC+GGG | + | chr8.4:54331773-54331792 | MS.gene42749:intron | 50.0% | |
| CTCTGGTCCATCTTGATCAG+AGG | + | chr8.4:54333012-54333031 | MS.gene42749:intron | 50.0% | |
| CTGTTTACCCTCCTTGGAAC+TGG | - | chr8.4:54328763-54328782 | None:intergenic | 50.0% | |
| GCGATAAAGGGAGCTTCGTT+AGG | + | chr8.4:54335087-54335106 | MS.gene42749:intron | 50.0% | |
| GCTGATGCGCATAGTAGTGA+AGG | - | chr8.4:54333566-54333585 | None:intergenic | 50.0% | |
| GGAAGTCATCCCAATCTTGC+AGG | + | chr8.4:54331311-54331330 | MS.gene42749:intron | 50.0% | |
| GGAGATGCTCTTAGAGAGCA+AGG | - | chr8.4:54331647-54331666 | None:intergenic | 50.0% | |
| GGGCCCCAATATAGGATTCT+TGG | - | chr8.4:54331412-54331431 | None:intergenic | 50.0% | |
| GGTTGTGTGAGAATCCAACC+TGG | - | chr8.4:54334006-54334025 | None:intergenic | 50.0% | |
| GTTAAGTAAGGACCCCCCAT+TGG | - | chr8.4:54331668-54331687 | None:intergenic | 50.0% | |
| TACTTCCAATCGCAGGCACA+TGG | + | chr8.4:54332169-54332188 | MS.gene42749:intron | 50.0% | |
| TAGTTGCCCGTTCCTTAACG+GGG | - | chr8.4:54331741-54331760 | None:intergenic | 50.0% | |
| TATTCCAGAAAGGAGCTCGG+TGG | + | chr8.4:54333827-54333846 | MS.gene42749:intron | 50.0% | |
| TCCAATGGAGGGTCCTTAAC+GGG | - | chr8.4:54331702-54331721 | None:intergenic | 50.0% | |
| TCTACCCTGTTTACCCTCCT+TGG | - | chr8.4:54328769-54328788 | None:intergenic | 50.0% | |
| TGGGGGGTCCTTACTTAACA+AGG | + | chr8.4:54331669-54331688 | MS.gene42749:intron | 50.0% | |
| TTCCACAAAGCTGCTGGGAA+GGG | + | chr8.4:54333779-54333798 | MS.gene42749:intron | 50.0% | |
| TTGAGTCCCCGTTAAGGAAC+GGG | + | chr8.4:54331732-54331751 | MS.gene42749:intron | 50.0% | |
| ! | GTCCGTTTGATGGTCAGGAT+AGG | - | chr8.4:54334868-54334887 | None:intergenic | 50.0% |
| ! | GTGCGTTTGATGGTCAGGAT+AGG | + | chr8.4:54334414-54334433 | MS.gene42749:intron | 50.0% |
| ! | TAAGGGTGCGTTTGATGGTC+AGG | + | chr8.4:54334409-54334428 | MS.gene42749:intron | 50.0% |
| ! | TCCTCATATGCGGGGAGTAT+TGG | + | chr8.4:54332234-54332253 | MS.gene42749:CDS | 50.0% |
| ! | TTAGGGTCCGTTTGATGGTC+AGG | - | chr8.4:54334873-54334892 | None:intergenic | 50.0% |
| !! | CGACGGCTGGAACTTTTTCT+TGG | - | chr8.4:54330737-54330756 | None:intergenic | 50.0% |
| !! | CTAAGAGCATCTCCAATGGG+GGG | + | chr8.4:54331653-54331672 | MS.gene42749:intron | 50.0% |
| !! | GGAAGTTCTGAAACAGCCAG+TGG | + | chr8.4:54328993-54329012 | MS.gene42749:CDS | 50.0% |
| ACAAGGACCACTCCCCGTTA+AGG | + | chr8.4:54331686-54331705 | MS.gene42749:intron | 55.0% | |
| AGTCTCTGCCAGTTCCAAGG+AGG | + | chr8.4:54328752-54328771 | MS.gene42749:CDS | 55.0% | |
| ATGGCTGCCATCAGAGGACA+CGG | + | chr8.4:54329432-54329451 | MS.gene42749:intron | 55.0% | |
| CCAATGGAGGGTCCTTAACG+GGG | - | chr8.4:54331701-54331720 | None:intergenic | 55.0% | |
| CGTTAAGGACCCTCCATTGG+AGG | + | chr8.4:54331701-54331720 | MS.gene42749:intron | 55.0% | |
| CTTGACCATGTGCCTGCGAT+TGG | - | chr8.4:54332177-54332196 | None:intergenic | 55.0% | |
| GAAACAGCCAGTGGCCAAAG+TGG | + | chr8.4:54329002-54329021 | MS.gene42749:CDS | 55.0% | |
| GATGGTCAGGATAGGGAGAC+AGG | + | chr8.4:54334422-54334441 | MS.gene42749:intron | 55.0% | |
| GGAAGTCTCTGCCAGTTCCA+AGG | + | chr8.4:54328749-54328768 | MS.gene42749:CDS | 55.0% | |
| GGTCAGGATAGGATAGAGGC+AGG | - | chr8.4:54334857-54334876 | None:intergenic | 55.0% | |
| GGTTGCAGCAGTGAAACCGT+TGG | + | chr8.4:54333850-54333869 | MS.gene42749:intron | 55.0% | |
| GTCTCTGCCAGTTCCAAGGA+GGG | + | chr8.4:54328753-54328772 | MS.gene42749:CDS | 55.0% | |
| TCCAGTATGGCTGCCATCAG+AGG | + | chr8.4:54329426-54329445 | MS.gene42749:intron | 55.0% | |
| TCCTCTGATGGCAGCCATAC+TGG | - | chr8.4:54329430-54329449 | None:intergenic | 55.0% | |
| TGATCTGCCGTGTCCTCTGA+TGG | - | chr8.4:54329442-54329461 | None:intergenic | 55.0% | |
| TGGAAGACCACTTTGGCCAC+TGG | - | chr8.4:54329012-54329031 | None:intergenic | 55.0% | |
| TTCCCTTCCCAGCAGCTTTG+TGG | - | chr8.4:54333784-54333803 | None:intergenic | 55.0% | |
| ! | TTCCAGAAAGGAGCTCGGTG+GGG | + | chr8.4:54333829-54333848 | MS.gene42749:intron | 55.0% |
| !! | GAGTAGGCACCGGCGATAAA+GGG | + | chr8.4:54335075-54335094 | MS.gene42749:intron | 55.0% |
| !! | TGCGGGGAGTATTGGTCAAC+TGG | + | chr8.4:54332242-54332261 | MS.gene42749:CDS | 55.0% |
| AACCCCACCGAGCTCCTTTC+TGG | - | chr8.4:54333834-54333853 | None:intergenic | 60.0% | |
| CCCCGTTAAGGACCCTCCAT+TGG | + | chr8.4:54331698-54331717 | MS.gene42749:intron | 60.0% | |
| GTGGGACCCGTTAGTTACCC+AGG | - | chr8.4:54331782-54331801 | None:intergenic | 60.0% | |
| !! | GGAGTAGGCACCGGCGATAA+AGG | + | chr8.4:54335074-54335093 | MS.gene42749:intron | 60.0% |
| GGAGGGTCCTTAACGGGGAG+TGG | - | chr8.4:54331696-54331715 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 54328741 | 54335190 | 54328741 | ID=MS.gene42749 |
| chr8.4 | mRNA | 54328741 | 54335190 | 54328741 | ID=MS.gene42749.t1;Parent=MS.gene42749 |
| chr8.4 | exon | 54328741 | 54328804 | 54328741 | ID=MS.gene42749.t1.exon1;Parent=MS.gene42749.t1 |
| chr8.4 | CDS | 54328741 | 54328804 | 54328741 | ID=cds.MS.gene42749.t1;Parent=MS.gene42749.t1 |
| chr8.4 | exon | 54328984 | 54329032 | 54328984 | ID=MS.gene42749.t1.exon2;Parent=MS.gene42749.t1 |
| chr8.4 | CDS | 54328984 | 54329032 | 54328984 | ID=cds.MS.gene42749.t1;Parent=MS.gene42749.t1 |
| chr8.4 | exon | 54329125 | 54329218 | 54329125 | ID=MS.gene42749.t1.exon3;Parent=MS.gene42749.t1 |
| chr8.4 | CDS | 54329125 | 54329218 | 54329125 | ID=cds.MS.gene42749.t1;Parent=MS.gene42749.t1 |
| chr8.4 | exon | 54329998 | 54330043 | 54329998 | ID=MS.gene42749.t1.exon4;Parent=MS.gene42749.t1 |
| chr8.4 | CDS | 54329998 | 54330043 | 54329998 | ID=cds.MS.gene42749.t1;Parent=MS.gene42749.t1 |
| chr8.4 | exon | 54330401 | 54330793 | 54330401 | ID=MS.gene42749.t1.exon5;Parent=MS.gene42749.t1 |
| chr8.4 | CDS | 54330401 | 54330793 | 54330401 | ID=cds.MS.gene42749.t1;Parent=MS.gene42749.t1 |
| chr8.4 | exon | 54330872 | 54330994 | 54330872 | ID=MS.gene42749.t1.exon6;Parent=MS.gene42749.t1 |
| chr8.4 | CDS | 54330872 | 54330994 | 54330872 | ID=cds.MS.gene42749.t1;Parent=MS.gene42749.t1 |
| chr8.4 | exon | 54332184 | 54332273 | 54332184 | ID=MS.gene42749.t1.exon7;Parent=MS.gene42749.t1 |
| chr8.4 | CDS | 54332184 | 54332273 | 54332184 | ID=cds.MS.gene42749.t1;Parent=MS.gene42749.t1 |
| chr8.4 | exon | 54332461 | 54332622 | 54332461 | ID=MS.gene42749.t1.exon8;Parent=MS.gene42749.t1 |
| chr8.4 | CDS | 54332461 | 54332622 | 54332461 | ID=cds.MS.gene42749.t1;Parent=MS.gene42749.t1 |
| chr8.4 | exon | 54333255 | 54333353 | 54333255 | ID=MS.gene42749.t1.exon9;Parent=MS.gene42749.t1 |
| chr8.4 | CDS | 54333255 | 54333353 | 54333255 | ID=cds.MS.gene42749.t1;Parent=MS.gene42749.t1 |
| chr8.4 | exon | 54335179 | 54335190 | 54335179 | ID=MS.gene42749.t1.exon10;Parent=MS.gene42749.t1 |
| chr8.4 | CDS | 54335179 | 54335190 | 54335179 | ID=cds.MS.gene42749.t1;Parent=MS.gene42749.t1 |
| Gene Sequence |
| Protein sequence |
