AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42765

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42765.t1 MTR_8g447340 96.578 526 18 0 1 526 1 526 0.0 1031
MS.gene42765.t1 MTR_4g030210 46.746 507 253 5 13 519 21 510 5.04e-167 483
MS.gene42765.t1 MTR_4g030040 43.786 523 275 7 1 521 3 508 1.52e-166 481
MS.gene42765.t1 MTR_4g030040 44.358 514 269 6 9 521 10 507 1.85e-166 481
MS.gene42765.t1 MTR_8g039190 42.913 515 276 5 7 518 9 508 1.68e-156 456
MS.gene42765.t1 MTR_5g080050 43.561 528 282 5 2 525 3 518 2.20e-152 446
MS.gene42765.t1 MTR_5g082760 42.500 520 279 6 11 518 10 521 2.97e-146 431
MS.gene42765.t1 MTR_8g039070 38.388 521 270 7 8 525 7 479 3.29e-128 383
MS.gene42765.t1 MTR_2g081930 33.648 529 313 11 8 515 12 523 6.25e-81 262
MS.gene42765.t1 MTR_4g081490 32.468 385 234 5 151 521 75 447 1.34e-54 191
MS.gene42765.t1 MTR_2g081950 34.211 380 225 6 150 510 27 400 3.05e-52 183
MS.gene42765.t1 MTR_4g120720 31.229 301 167 7 86 382 2 266 7.96e-35 132
MS.gene42765.t1 MTR_4g005090 26.552 467 269 19 107 520 54 499 5.13e-18 87.4
MS.gene42765.t1 MTR_4g081480 32.847 137 82 3 5 141 18 144 2.33e-17 79.3
MS.gene42765.t1 MTR_2g081960 27.660 141 88 3 5 145 14 140 1.07e-13 68.9
MS.gene42765.t1 MTR_3g116060 32.051 156 101 2 139 289 51 206 7.33e-13 71.6
MS.gene42765.t1 MTR_1g038600 25.641 273 177 10 149 403 85 349 3.76e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42765.t1 AT1G16390 58.077 520 204 8 1 517 1 509 0.0 597
MS.gene42765.t1 AT1G79360 53.558 534 219 8 1 521 1 518 0.0 578
MS.gene42765.t1 AT1G16370 40.607 527 291 9 1 519 1 513 4.12e-138 409
MS.gene42765.t1 AT1G79410 41.811 519 279 9 6 519 7 507 4.13e-133 396
MS.gene42765.t1 AT1G73220 36.138 523 306 9 14 525 31 536 1.97e-107 331
MS.gene42765.t1 AT3G20660 31.548 504 309 9 32 519 38 521 8.08e-76 249
MS.gene42765.t1 AT3G51490 29.534 193 126 4 104 289 19 208 9.98e-14 74.3
MS.gene42765.t1 AT3G51490 29.534 193 126 4 104 289 19 208 1.05e-13 74.3
MS.gene42765.t1 AT3G51490 30.769 156 103 2 139 289 3 158 1.75e-13 73.6
MS.gene42765.t1 AT1G20840 28.205 156 107 2 139 289 51 206 7.73e-12 68.6
MS.gene42765.t1 AT1G20840 28.205 156 107 2 139 289 51 206 7.73e-12 68.6
MS.gene42765.t1 AT3G13050 23.028 469 290 16 107 521 48 499 1.96e-11 66.6
MS.gene42765.t1 AT3G13050 23.028 469 290 16 107 521 48 499 1.96e-11 66.6
MS.gene42765.t1 AT3G13050 23.028 469 290 16 107 521 48 499 1.96e-11 66.6
MS.gene42765.t1 AT3G13050 23.028 469 290 16 107 521 48 499 1.96e-11 66.6
MS.gene42765.t1 AT4G04750 22.857 455 280 18 104 516 99 524 3.80e-11 65.9
MS.gene42765.t1 AT4G04760 24.270 445 262 21 104 507 50 460 4.53e-11 65.5
MS.gene42765.t1 AT4G04750 22.857 455 280 18 104 516 55 480 5.75e-11 65.1
MS.gene42765.t1 AT4G04750 22.857 455 280 18 104 516 55 480 5.75e-11 65.1
MS.gene42765.t1 AT2G43330 24.934 381 245 14 155 504 99 469 8.78e-11 64.7

Find 118 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTTGATGGATAAATTT+AGG 0.186538 8.2:-55117950 None:intergenic
GGAATTGGAGTTGTCTATTA+TGG 0.204957 8.2:+55118089 MS.gene42765:CDS
AGAGAATGAAGGTGTTTATT+TGG 0.221297 8.2:-55117123 None:intergenic
GGAAATAAGTTTCTTTGTTA+TGG 0.222142 8.2:+55118488 MS.gene42765:CDS
AAGGAGACTATTGTTGATTA+TGG 0.235701 8.2:+55118055 MS.gene42765:CDS
TCCAGCTTCCATGTTCTTCA+TGG 0.236434 8.2:+55117449 MS.gene42765:CDS
TTGATTATGGCATTAGGTTT+TGG 0.258022 8.2:+55118068 MS.gene42765:CDS
TCTTCATAGACAAGTTTAAA+AGG 0.269222 8.2:+55118207 MS.gene42765:CDS
TCATTGCTTAAATTCTTATC+TGG 0.270363 8.2:+55117612 MS.gene42765:CDS
TAAAATTTCTTGTGACATAT+TGG 0.273163 8.2:+55118616 MS.gene42765:CDS
CCACTTTCTCTCCCAACATT+TGG 0.297693 8.2:+55117583 MS.gene42765:CDS
GACACTTAGGTAAAGATTAA+AGG 0.306332 8.2:-55118138 None:intergenic
ATCCCAAGCCCATGAGCCTT+TGG 0.311526 8.2:-55117358 None:intergenic
CTATGGCGCAAGATGCAAAT+AGG 0.314696 8.2:+55118299 MS.gene42765:CDS
CTTAAATTCTTATCTGGATT+CGG 0.317876 8.2:+55117618 MS.gene42765:CDS
TTCCCAAAGGCTCATGGGCT+TGG 0.319586 8.2:+55117355 MS.gene42765:CDS
GAAATAAGTTTCTTTGTTAT+GGG 0.319760 8.2:+55118489 MS.gene42765:CDS
TTCTTCATGGGTTGCTTAGT+TGG 0.334221 8.2:+55117462 MS.gene42765:CDS
TTTGTGTCACTAGTGTTATT+GGG 0.359751 8.2:-55117093 None:intergenic
GCTAGGCTTGCTGTGGTGTT+TGG 0.363493 8.2:+55118428 MS.gene42765:CDS
AATAAACACCTTCATTCTCT+TGG 0.365332 8.2:+55117126 MS.gene42765:CDS
AAAGGCTCATGGGCTTGGGA+TGG 0.382132 8.2:+55117360 MS.gene42765:CDS
CTATTGTTGATTATGGCATT+AGG 0.382177 8.2:+55118062 MS.gene42765:CDS
CCACTATTGAAGGGGAACTA+TGG 0.385421 8.2:+55118282 MS.gene42765:CDS
CCAGCTTCCATGTTCTTCAT+GGG 0.388190 8.2:+55117450 MS.gene42765:CDS
TCCCAAAGGCTCATGGGCTT+GGG 0.389985 8.2:+55117356 MS.gene42765:CDS
TTTCTTGTCCCTTCCTGCTA+TGG 0.406080 8.2:+55117746 MS.gene42765:CDS
AATGCATAGGTGAACTCAAT+TGG 0.408457 8.2:+55117163 MS.gene42765:CDS
AGCATGCAATAGAAAATTGT+TGG 0.409272 8.2:-55117822 None:intergenic
GAGGAATTCAGCTTTGTCTA+TGG 0.414020 8.2:+55118406 MS.gene42765:CDS
TATGGTATGCCACTAGGTCT+TGG 0.417877 8.2:+55118107 MS.gene42765:CDS
TCCCAAGCCCATGAGCCTTT+GGG 0.421056 8.2:-55117357 None:intergenic
GGCTTGGGATGGGCCAGCAC+AGG 0.424738 8.2:+55117371 MS.gene42765:CDS
CCTCTCAATAGAAGCCATCT+AGG 0.428587 8.2:-55117870 None:intergenic
CGAGGTAAGATTAGTGTCAT+TGG 0.430581 8.2:+55117702 MS.gene42765:CDS
TCGTTCAAGAGTCACCTAGA+TGG 0.439288 8.2:+55117856 MS.gene42765:CDS
CCATAGTTCCCCTTCAATAG+TGG 0.440279 8.2:-55118282 None:intergenic
AGGCTTGCTGTGGTGTTTGG+TGG 0.445248 8.2:+55118431 MS.gene42765:CDS
AAGGCTCATGGGCTTGGGAT+GGG 0.445356 8.2:+55117361 MS.gene42765:CDS
TGAAGATGGTATCTCACTTA+AGG 0.447007 8.2:-55118171 None:intergenic
CTGTTCTAATATCCTTTGCT+TGG 0.447398 8.2:+55117202 MS.gene42765:CDS
AGTCCATTGTTGGTGGGTGC+TGG 0.448528 8.2:+55118461 MS.gene42765:CDS
AAGTGAGATACCATCTTCAT+TGG 0.448817 8.2:+55118175 MS.gene42765:CDS
GTGTGAAGACATATTGTTGA+TGG 0.453799 8.2:-55117961 None:intergenic
TTCATGGGTTGCTTAGTTGG+TGG 0.455562 8.2:+55117465 MS.gene42765:CDS
CTGCAAGTGTGGACAAGAAA+AGG 0.456692 8.2:-55117488 None:intergenic
GTGTTCTTACCTGAGACAAA+AGG 0.458209 8.2:+55118551 MS.gene42765:CDS
CTTGCAGACTCTTCATCACT+TGG 0.478004 8.2:+55117504 MS.gene42765:CDS
AGTATAATGTCCACTATTGA+AGG 0.485637 8.2:+55118272 MS.gene42765:CDS
TATGGCGCAAGATGCAAATA+GGG 0.486468 8.2:+55118300 MS.gene42765:CDS
TGTCACTAGTGTTATTGGGT+TGG 0.486594 8.2:-55117089 None:intergenic
GGCCTCCATCATATCTGAAT+GGG 0.487271 8.2:+55117392 MS.gene42765:CDS
GTTCTAGCTTCCGAGCTCGT+TGG 0.488407 8.2:+55117669 MS.gene42765:CDS
AGGCATTAAAAGTGACACTT+AGG 0.490833 8.2:-55118151 None:intergenic
CAATGAGTAGATCCAAATGT+TGG 0.492354 8.2:-55117595 None:intergenic
TCACCGATGCACTTCCATCA+TGG 0.492497 8.2:+55117259 MS.gene42765:CDS
AAACAGTGATGAATGTTTGT+TGG 0.492661 8.2:-55117236 None:intergenic
TTCATCCATTGTATCACAAA+GGG 0.496099 8.2:-55118579 None:intergenic
AGGCCTCCATCATATCTGAA+TGG 0.501290 8.2:+55117391 MS.gene42765:CDS
AACAGTGATGAATGTTTGTT+GGG 0.502527 8.2:-55117235 None:intergenic
GATATGATGGAGGCCTGTGC+TGG 0.503862 8.2:-55117384 None:intergenic
CATGGCCCATTCAGATATGA+TGG 0.504532 8.2:-55117397 None:intergenic
GGTTGGCTCAGAAGAGGAGT+TGG 0.504676 8.2:-55117072 None:intergenic
AATGAGTAGATCCAAATGTT+GGG 0.509719 8.2:-55117594 None:intergenic
GAATTGATGTCCACAAGTAA+AGG 0.510968 8.2:-55117800 None:intergenic
CCCATGAAGAACATGGAAGC+TGG 0.512327 8.2:-55117450 None:intergenic
CCAAATGTTGGGAGAGAAAG+TGG 0.516124 8.2:-55117583 None:intergenic
GCAAGTTTCCCAAAGGCTCA+TGG 0.516859 8.2:+55117349 MS.gene42765:CDS
GGATTCGGCCGCGCTACCAT+CGG 0.518567 8.2:+55117633 MS.gene42765:CDS
GCTGAATTCCTCACACAAGT+TGG 0.519274 8.2:-55118395 None:intergenic
TCACCGGTGCAGTGCCATGA+TGG 0.520447 8.2:-55117273 None:intergenic
TTGTTTGCATAAGCCATAGC+AGG 0.520590 8.2:-55117759 None:intergenic
ATTCAGCTTTGTCTATGGCT+AGG 0.521256 8.2:+55118411 MS.gene42765:CDS
CAAGTTTCCCAAAGGCTCAT+GGG 0.531113 8.2:+55117350 MS.gene42765:CDS
CAAAGGATATTAGAACAGCT+TGG 0.537430 8.2:-55117197 None:intergenic
TTGTTGGTGGGTGCTGGTAG+AGG 0.538136 8.2:+55118467 MS.gene42765:CDS
TGTTCTTACCTGAGACAAAA+GGG 0.538318 8.2:+55118552 MS.gene42765:CDS
CCATCGCTTTCCAACGAGCT+CGG 0.545161 8.2:-55117679 None:intergenic
CTTCCATCATGGCACTGCAC+CGG 0.552872 8.2:+55117270 MS.gene42765:CDS
AGAGAAAGTGGTGAAGAATG+AGG 0.554837 8.2:-55117571 None:intergenic
GTCTATGGCTAGGCTTGCTG+TGG 0.557750 8.2:+55118421 MS.gene42765:CDS
ATGCAAACAAAACTTCCTCA+TGG 0.558952 8.2:+55117772 MS.gene42765:CDS
TGCATAAGCCATAGCAGGAA+GGG 0.561241 8.2:-55117754 None:intergenic
GGAAGAAAATAATATGAATG+TGG 0.561848 8.2:+55117986 MS.gene42765:CDS
CTACCAGCACCCACCAACAA+TGG 0.564182 8.2:-55118464 None:intergenic
CTTCATCCATTGTATCACAA+AGG 0.568181 8.2:-55118580 None:intergenic
AAATAAGTTTCTTTGTTATG+GGG 0.570429 8.2:+55118490 MS.gene42765:CDS
TGCAAAAGAAATGGTCCTCA+AGG 0.573559 8.2:+55118036 MS.gene42765:CDS
GTCTATTATGGTATGCCACT+AGG 0.573826 8.2:+55118101 MS.gene42765:CDS
CCGAGCTCGTTGGAAAGCGA+TGG 0.585244 8.2:+55117679 MS.gene42765:CDS
TGTGAGCGCTCTATCATCAC+AGG 0.586373 8.2:+55117423 MS.gene42765:CDS
CTCGTTGGAAAGCGATGGCG+AGG 0.587564 8.2:+55117684 MS.gene42765:CDS
TTGTGAATCCAAGAGAATGA+AGG 0.590312 8.2:-55117134 None:intergenic
GAATGAAGGTGTTTATTTGG+TGG 0.593017 8.2:-55117120 None:intergenic
CATGGAGAAACCTTTACTTG+TGG 0.594971 8.2:+55117790 MS.gene42765:CDS
GATAGAGCGCTCACACTGCA+TGG 0.603997 8.2:-55117415 None:intergenic
TTGCATAAGCCATAGCAGGA+AGG 0.604966 8.2:-55117755 None:intergenic
GTATAATGTCCACTATTGAA+GGG 0.609508 8.2:+55118273 MS.gene42765:CDS
AACGAGGGATGAAGTGCCGA+TGG 0.610016 8.2:-55117649 None:intergenic
TTATTGGGTTGGCTCAGAAG+AGG 0.610379 8.2:-55117078 None:intergenic
GAGCTCGGAAGCTAGAACGA+GGG 0.613872 8.2:-55117664 None:intergenic
TGATGAAGAGTCTGCAAGTG+TGG 0.615473 8.2:-55117499 None:intergenic
TGAAGAACATGGAAGCTGGA+AGG 0.616002 8.2:-55117446 None:intergenic
TAAGCAACCCATGAAGAACA+TGG 0.617434 8.2:-55117457 None:intergenic
CCTAGATGGCTTCTATTGAG+AGG 0.619227 8.2:+55117870 MS.gene42765:CDS
CAAGTAAAGGTTTCTCCATG+AGG 0.621774 8.2:-55117787 None:intergenic
GGCGTCAAAGATCCAAGCAA+AGG 0.624319 8.2:-55117214 None:intergenic
TATAATGTCCACTATTGAAG+GGG 0.638910 8.2:+55118274 MS.gene42765:CDS
ATGAAGTGCCGATGGTAGCG+CGG 0.645829 8.2:-55117641 None:intergenic
CAACAATATGTCTTCACACG+AGG 0.646093 8.2:+55117965 MS.gene42765:CDS
GAGTGCCCTTTGTGATACAA+TGG 0.652906 8.2:+55118574 MS.gene42765:CDS
AATCAACAATAGTCTCCTTG+AGG 0.659489 8.2:-55118051 None:intergenic
AATTGTTTCCAACTTGTGTG+AGG 0.667556 8.2:+55118387 MS.gene42765:CDS
CGAGCTCGGAAGCTAGAACG+AGG 0.668802 8.2:-55117665 None:intergenic
GTGCCATGATGGAAGTGCAT+CGG 0.671550 8.2:-55117262 None:intergenic
GATGTGTGCAAGTTTCCCAA+AGG 0.681202 8.2:+55117342 MS.gene42765:CDS
GACAAGTTTCCAAGACCTAG+TGG 0.688488 8.2:-55118116 None:intergenic
GGCCCATTCAGATATGATGG+AGG 0.693551 8.2:-55117394 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTTCTTGTGACATAT+TGG + chr8.2:55118616-55118635 MS.gene42765:CDS 20.0%
!!! AAATAAGTTTCTTTGTTATG+GGG + chr8.2:55118490-55118509 MS.gene42765:CDS 20.0%
!!! GAAATAAGTTTCTTTGTTAT+GGG + chr8.2:55118489-55118508 MS.gene42765:CDS 20.0%
!!! TATTGTTGATGGATAAATTT+AGG - chr8.2:55117953-55117972 None:intergenic 20.0%
! CTTAAATTCTTATCTGGATT+CGG + chr8.2:55117618-55117637 MS.gene42765:CDS 25.0%
! GGAAATAAGTTTCTTTGTTA+TGG + chr8.2:55118488-55118507 MS.gene42765:CDS 25.0%
! GGAAGAAAATAATATGAATG+TGG + chr8.2:55117986-55118005 MS.gene42765:CDS 25.0%
! TCATTGCTTAAATTCTTATC+TGG + chr8.2:55117612-55117631 MS.gene42765:CDS 25.0%
! TCTTCATAGACAAGTTTAAA+AGG + chr8.2:55118207-55118226 MS.gene42765:CDS 25.0%
! TTCACAATAGAAAAATGCAT+AGG + chr8.2:55117150-55117169 MS.gene42765:CDS 25.0%
!! AACTTTTGTTGCAAAAGAAA+TGG + chr8.2:55118027-55118046 MS.gene42765:CDS 25.0%
!! GAAAACATTGACATTTTGAA+TGG + chr8.2:55117294-55117313 MS.gene42765:CDS 25.0%
!! TTTGTGTTTTGTATCATAAG+TGG + chr8.2:55118242-55118261 MS.gene42765:CDS 25.0%
!!! ATTAGTTTTAGTGGAGTATT+TGG + chr8.2:55118527-55118546 MS.gene42765:CDS 25.0%
AAAAATGTGACCAATGAAGA+TGG - chr8.2:55118188-55118207 None:intergenic 30.0%
AAACAGTGATGAATGTTTGT+TGG - chr8.2:55117239-55117258 None:intergenic 30.0%
AACAGTGATGAATGTTTGTT+GGG - chr8.2:55117238-55117257 None:intergenic 30.0%
AATAAACACCTTCATTCTCT+TGG + chr8.2:55117126-55117145 MS.gene42765:CDS 30.0%
AATGAGTAGATCCAAATGTT+GGG - chr8.2:55117597-55117616 None:intergenic 30.0%
AGCATGCAATAGAAAATTGT+TGG - chr8.2:55117825-55117844 None:intergenic 30.0%
AGTATAATGTCCACTATTGA+AGG + chr8.2:55118272-55118291 MS.gene42765:CDS 30.0%
GACACTTAGGTAAAGATTAA+AGG - chr8.2:55118141-55118160 None:intergenic 30.0%
GTATAATGTCCACTATTGAA+GGG + chr8.2:55118273-55118292 MS.gene42765:CDS 30.0%
TATAATGTCCACTATTGAAG+GGG + chr8.2:55118274-55118293 MS.gene42765:CDS 30.0%
TTCATCCATTGTATCACAAA+GGG - chr8.2:55118582-55118601 None:intergenic 30.0%
! AACAATTTTCTATTGCATGC+TGG + chr8.2:55117824-55117843 MS.gene42765:CDS 30.0%
! AAGGAGACTATTGTTGATTA+TGG + chr8.2:55118055-55118074 MS.gene42765:CDS 30.0%
! CAAAATGTCAATGTTTTCAC+CGG - chr8.2:55117292-55117311 None:intergenic 30.0%
! CTATTGTTGATTATGGCATT+AGG + chr8.2:55118062-55118081 MS.gene42765:CDS 30.0%
! CTTCTTCTCAATTCTTTTGA+TGG + chr8.2:55117542-55117561 MS.gene42765:CDS 30.0%
! CTTTTGCAACAAAAGTTTGA+GGG - chr8.2:55118024-55118043 None:intergenic 30.0%
! TCTTTTGCAACAAAAGTTTG+AGG - chr8.2:55118025-55118044 None:intergenic 30.0%
! TTGATTATGGCATTAGGTTT+TGG + chr8.2:55118068-55118087 MS.gene42765:CDS 30.0%
! TTTGTGTCACTAGTGTTATT+GGG - chr8.2:55117096-55117115 None:intergenic 30.0%
!! AGAGAATGAAGGTGTTTATT+TGG - chr8.2:55117126-55117145 None:intergenic 30.0%
!! TTCTTTGTTATGGGGTTTTT+GGG + chr8.2:55118498-55118517 MS.gene42765:CDS 30.0%
!! TTTCTTTGTTATGGGGTTTT+TGG + chr8.2:55118497-55118516 MS.gene42765:CDS 30.0%
!! TTTTGTGTCACTAGTGTTAT+TGG - chr8.2:55117097-55117116 None:intergenic 30.0%
AAGTGAGATACCATCTTCAT+TGG + chr8.2:55118175-55118194 MS.gene42765:CDS 35.0%
AATCAACAATAGTCTCCTTG+AGG - chr8.2:55118054-55118073 None:intergenic 35.0%
AATGCATAGGTGAACTCAAT+TGG + chr8.2:55117163-55117182 MS.gene42765:CDS 35.0%
AATTGTTTCCAACTTGTGTG+AGG + chr8.2:55118387-55118406 MS.gene42765:CDS 35.0%
AGGCATTAAAAGTGACACTT+AGG - chr8.2:55118154-55118173 None:intergenic 35.0%
ATGCAAACAAAACTTCCTCA+TGG + chr8.2:55117772-55117791 MS.gene42765:CDS 35.0%
CAAAGGATATTAGAACAGCT+TGG - chr8.2:55117200-55117219 None:intergenic 35.0%
CAATGAGTAGATCCAAATGT+TGG - chr8.2:55117598-55117617 None:intergenic 35.0%
CTGTTCTAATATCCTTTGCT+TGG + chr8.2:55117202-55117221 MS.gene42765:CDS 35.0%
CTTCATCCATTGTATCACAA+AGG - chr8.2:55118583-55118602 None:intergenic 35.0%
GAATTGATGTCCACAAGTAA+AGG - chr8.2:55117803-55117822 None:intergenic 35.0%
GGAATTGGAGTTGTCTATTA+TGG + chr8.2:55118089-55118108 MS.gene42765:CDS 35.0%
GTGTGAAGACATATTGTTGA+TGG - chr8.2:55117964-55117983 None:intergenic 35.0%
TGAAGATGGTATCTCACTTA+AGG - chr8.2:55118174-55118193 None:intergenic 35.0%
TGTTCTTACCTGAGACAAAA+GGG + chr8.2:55118552-55118571 MS.gene42765:CDS 35.0%
TTGTGAATCCAAGAGAATGA+AGG - chr8.2:55117137-55117156 None:intergenic 35.0%
!! GAATGAAGGTGTTTATTTGG+TGG - chr8.2:55117123-55117142 None:intergenic 35.0%
!! GGCTTCTTTTGTTTCACTAT+AGG + chr8.2:55117723-55117742 MS.gene42765:CDS 35.0%
!!! ATGGCATTAGGTTTTGGAAT+TGG + chr8.2:55118074-55118093 MS.gene42765:CDS 35.0%
AGAGAAAGTGGTGAAGAATG+AGG - chr8.2:55117574-55117593 None:intergenic 40.0%
CAACAATATGTCTTCACACG+AGG + chr8.2:55117965-55117984 MS.gene42765:CDS 40.0%
CAAGTAAAGGTTTCTCCATG+AGG - chr8.2:55117790-55117809 None:intergenic 40.0%
CATGGAGAAACCTTTACTTG+TGG + chr8.2:55117790-55117809 MS.gene42765:CDS 40.0%
CGAGGTAAGATTAGTGTCAT+TGG + chr8.2:55117702-55117721 MS.gene42765:CDS 40.0%
GTCTATTATGGTATGCCACT+AGG + chr8.2:55118101-55118120 MS.gene42765:CDS 40.0%
GTGTTCTTACCTGAGACAAA+AGG + chr8.2:55118551-55118570 MS.gene42765:CDS 40.0%
TAAGCAACCCATGAAGAACA+TGG - chr8.2:55117460-55117479 None:intergenic 40.0%
TATGGCGCAAGATGCAAATA+GGG + chr8.2:55118300-55118319 MS.gene42765:CDS 40.0%
TGCAAAAGAAATGGTCCTCA+AGG + chr8.2:55118036-55118055 MS.gene42765:CDS 40.0%
TTGTTTGCATAAGCCATAGC+AGG - chr8.2:55117762-55117781 None:intergenic 40.0%
! AGCTTTTAGTCCATTGTTGG+TGG + chr8.2:55118454-55118473 MS.gene42765:CDS 40.0%
! ATTCAGCTTTGTCTATGGCT+AGG + chr8.2:55118411-55118430 MS.gene42765:CDS 40.0%
! GAGGAATTCAGCTTTGTCTA+TGG + chr8.2:55118406-55118425 MS.gene42765:CDS 40.0%
! GCTTTTAGTCCATTGTTGGT+GGG + chr8.2:55118455-55118474 MS.gene42765:CDS 40.0%
! TGGAGCTTTTAGTCCATTGT+TGG + chr8.2:55118451-55118470 MS.gene42765:CDS 40.0%
! TGTCACTAGTGTTATTGGGT+TGG - chr8.2:55117092-55117111 None:intergenic 40.0%
! TTCTTCATGGGTTGCTTAGT+TGG + chr8.2:55117462-55117481 MS.gene42765:CDS 40.0%
!!! GGGTTGGCTATTAGTTTTAG+TGG + chr8.2:55118518-55118537 MS.gene42765:CDS 40.0%
!!! TTGTTATGGGGTTTTTGGGT+TGG + chr8.2:55118502-55118521 MS.gene42765:CDS 40.0%
AGGCCTCCATCATATCTGAA+TGG + chr8.2:55117391-55117410 MS.gene42765:CDS 45.0%
CAAGTTTCCCAAAGGCTCAT+GGG + chr8.2:55117350-55117369 MS.gene42765:CDS 45.0%
CATGGCCCATTCAGATATGA+TGG - chr8.2:55117400-55117419 None:intergenic 45.0%
CCAAATGTTGGGAGAGAAAG+TGG - chr8.2:55117586-55117605 None:intergenic 45.0%
CCACTATTGAAGGGGAACTA+TGG + chr8.2:55118282-55118301 MS.gene42765:CDS 45.0%
CCACTTTCTCTCCCAACATT+TGG + chr8.2:55117583-55117602 MS.gene42765:CDS 45.0%
CCAGCTTCCATGTTCTTCAT+GGG + chr8.2:55117450-55117469 MS.gene42765:CDS 45.0%
CCATAGTTCCCCTTCAATAG+TGG - chr8.2:55118285-55118304 None:intergenic 45.0%
CCTAGATGGCTTCTATTGAG+AGG + chr8.2:55117870-55117889 MS.gene42765:CDS 45.0%
CCTCTCAATAGAAGCCATCT+AGG - chr8.2:55117873-55117892 None:intergenic 45.0%
CTATGGCGCAAGATGCAAAT+AGG + chr8.2:55118299-55118318 MS.gene42765:CDS 45.0%
CTGCAAGTGTGGACAAGAAA+AGG - chr8.2:55117491-55117510 None:intergenic 45.0%
CTTGCAGACTCTTCATCACT+TGG + chr8.2:55117504-55117523 MS.gene42765:CDS 45.0%
GACAAGTTTCCAAGACCTAG+TGG - chr8.2:55118119-55118138 None:intergenic 45.0%
GAGTGCCCTTTGTGATACAA+TGG + chr8.2:55118574-55118593 MS.gene42765:CDS 45.0%
GATGTGTGCAAGTTTCCCAA+AGG + chr8.2:55117342-55117361 MS.gene42765:CDS 45.0%
GCTGAATTCCTCACACAAGT+TGG - chr8.2:55118398-55118417 None:intergenic 45.0%
GGCCTCCATCATATCTGAAT+GGG + chr8.2:55117392-55117411 MS.gene42765:CDS 45.0%
TATGGTATGCCACTAGGTCT+TGG + chr8.2:55118107-55118126 MS.gene42765:CDS 45.0%
TCCAGCTTCCATGTTCTTCA+TGG + chr8.2:55117449-55117468 MS.gene42765:CDS 45.0%
TCGTTCAAGAGTCACCTAGA+TGG + chr8.2:55117856-55117875 MS.gene42765:CDS 45.0%
TGAAGAACATGGAAGCTGGA+AGG - chr8.2:55117449-55117468 None:intergenic 45.0%
TGATGAAGAGTCTGCAAGTG+TGG - chr8.2:55117502-55117521 None:intergenic 45.0%
TGCATAAGCCATAGCAGGAA+GGG - chr8.2:55117757-55117776 None:intergenic 45.0%
TTGCATAAGCCATAGCAGGA+AGG - chr8.2:55117758-55117777 None:intergenic 45.0%
TTTCTTGTCCCTTCCTGCTA+TGG + chr8.2:55117746-55117765 MS.gene42765:CDS 45.0%
! TTCATGGGTTGCTTAGTTGG+TGG + chr8.2:55117465-55117484 MS.gene42765:CDS 45.0%
!! TTATTGGGTTGGCTCAGAAG+AGG - chr8.2:55117081-55117100 None:intergenic 45.0%
CCCATGAAGAACATGGAAGC+TGG - chr8.2:55117453-55117472 None:intergenic 50.0%
GCAAGTTTCCCAAAGGCTCA+TGG + chr8.2:55117349-55117368 MS.gene42765:CDS 50.0%
GGCCCATTCAGATATGATGG+AGG - chr8.2:55117397-55117416 None:intergenic 50.0%
GGCGTCAAAGATCCAAGCAA+AGG - chr8.2:55117217-55117236 None:intergenic 50.0%
TCACCGATGCACTTCCATCA+TGG + chr8.2:55117259-55117278 MS.gene42765:CDS 50.0%
TGTGAGCGCTCTATCATCAC+AGG + chr8.2:55117423-55117442 MS.gene42765:CDS 50.0%
! GTGCCATGATGGAAGTGCAT+CGG - chr8.2:55117265-55117284 None:intergenic 50.0%
AAAGGCTCATGGGCTTGGGA+TGG + chr8.2:55117360-55117379 MS.gene42765:CDS 55.0%
AAGGCTCATGGGCTTGGGAT+GGG + chr8.2:55117361-55117380 MS.gene42765:CDS 55.0%
ATCCCAAGCCCATGAGCCTT+TGG - chr8.2:55117361-55117380 None:intergenic 55.0%
CCATCGCTTTCCAACGAGCT+CGG - chr8.2:55117682-55117701 None:intergenic 55.0%
CTACCAGCACCCACCAACAA+TGG - chr8.2:55118467-55118486 None:intergenic 55.0%
CTTCCATCATGGCACTGCAC+CGG + chr8.2:55117270-55117289 MS.gene42765:CDS 55.0%
GAGCTCGGAAGCTAGAACGA+GGG - chr8.2:55117667-55117686 None:intergenic 55.0%
TCCCAAAGGCTCATGGGCTT+GGG + chr8.2:55117356-55117375 MS.gene42765:CDS 55.0%
TCCCAAGCCCATGAGCCTTT+GGG - chr8.2:55117360-55117379 None:intergenic 55.0%
TTCCCAAAGGCTCATGGGCT+TGG + chr8.2:55117355-55117374 MS.gene42765:CDS 55.0%
! AGTCCATTGTTGGTGGGTGC+TGG + chr8.2:55118461-55118480 MS.gene42765:CDS 55.0%
! GATAGAGCGCTCACACTGCA+TGG - chr8.2:55117418-55117437 None:intergenic 55.0%
! GATATGATGGAGGCCTGTGC+TGG - chr8.2:55117387-55117406 None:intergenic 55.0%
! GGTTGGCTCAGAAGAGGAGT+TGG - chr8.2:55117075-55117094 None:intergenic 55.0%
!! AACGAGGGATGAAGTGCCGA+TGG - chr8.2:55117652-55117671 None:intergenic 55.0%
!! AGGCTTGCTGTGGTGTTTGG+TGG + chr8.2:55118431-55118450 MS.gene42765:CDS 55.0%
!! AGGGCACTCCCTTTTGTCTC+AGG - chr8.2:55118563-55118582 None:intergenic 55.0%
!! ATGAAGTGCCGATGGTAGCG+CGG - chr8.2:55117644-55117663 None:intergenic 55.0%
!! GCTAGGCTTGCTGTGGTGTT+TGG + chr8.2:55118428-55118447 MS.gene42765:CDS 55.0%
!! GTCTATGGCTAGGCTTGCTG+TGG + chr8.2:55118421-55118440 MS.gene42765:CDS 55.0%
!! GTTCTAGCTTCCGAGCTCGT+TGG + chr8.2:55117669-55117688 MS.gene42765:CDS 55.0%
!! TTGTTGGTGGGTGCTGGTAG+AGG + chr8.2:55118467-55118486 MS.gene42765:CDS 55.0%
CCGAGCTCGTTGGAAAGCGA+TGG + chr8.2:55117679-55117698 MS.gene42765:CDS 60.0%
CGAGCTCGGAAGCTAGAACG+AGG - chr8.2:55117668-55117687 None:intergenic 60.0%
CTCGTTGGAAAGCGATGGCG+AGG + chr8.2:55117684-55117703 MS.gene42765:CDS 60.0%
TCACCGGTGCAGTGCCATGA+TGG - chr8.2:55117276-55117295 None:intergenic 60.0%
GGATTCGGCCGCGCTACCAT+CGG + chr8.2:55117633-55117652 MS.gene42765:CDS 65.0%
GGCTTGGGATGGGCCAGCAC+AGG + chr8.2:55117371-55117390 MS.gene42765:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 55117063 55118643 55117063 ID=MS.gene42765
chr8.2 mRNA 55117063 55118643 55117063 ID=MS.gene42765.t1;Parent=MS.gene42765
chr8.2 exon 55117063 55118643 55117063 ID=MS.gene42765.t1.exon1;Parent=MS.gene42765.t1
chr8.2 CDS 55117063 55118643 55117063 ID=cds.MS.gene42765.t1;Parent=MS.gene42765.t1
Gene Sequence

>MS.gene42765

ATGGGTGATCCAACTCCTCTTCTGAGCCAACCCAATAACACTAGTGACACAAAAACACCACCAAATAAACACCTTCATTCTCTTGGATTCACAATAGAAAAATGCATAGGTGAACTCAATTGGAGTCAATTCTTCCAAGCTGTTCTAATATCCTTTGCTTGGATCTTTGACGCCCAACAAACATTCATCACTGTTTTCACCGATGCACTTCCATCATGGCACTGCACCGGTGAAAACATTGACATTTTGAATGGCTGCTACTCAACAACATCATTTAATGATGTGTGCAAGTTTCCCAAAGGCTCATGGGCTTGGGATGGGCCAGCACAGGCCTCCATCATATCTGAATGGGCCATGCAGTGTGAGCGCTCTATCATCACAGGCCTTCCAGCTTCCATGTTCTTCATGGGTTGCTTAGTTGGTGGCCTTTTCTTGTCCACACTTGCAGACTCTTCATCACTTGGTCGCAAGAACATGCTCTTCTTCTCAATTCTTTTGATGGCTCTTTCCTCATTCTTCACCACTTTCTCTCCCAACATTTGGATCTACTCATTGCTTAAATTCTTATCTGGATTCGGCCGCGCTACCATCGGCACTTCATCCCTCGTTCTAGCTTCCGAGCTCGTTGGAAAGCGATGGCGAGGTAAGATTAGTGTCATTGGCTTCTTTTGTTTCACTATAGGTTTCTTGTCCCTTCCTGCTATGGCTTATGCAAACAAAACTTCCTCATGGAGAAACCTTTACTTGTGGACATCAATTCCAACAATTTTCTATTGCATGCTGGTGAAAATTTTCGTTCAAGAGTCACCTAGATGGCTTCTATTGAGAGGAAAAAAAGAAGAAGCAATAGCTACACTAAAATACATCACTTCAATCACTCAAAGTAACCTAAATTTATCCATCAACAATATGTCTTCACACGAGGAAGAAAATAATATGAATGTGGATTTGTTTTATGCCCTCAAACTTTTGTTGCAAAAGAAATGGTCCTCAAGGAGACTATTGTTGATTATGGCATTAGGTTTTGGAATTGGAGTTGTCTATTATGGTATGCCACTAGGTCTTGGAAACTTGTCCTTTAATCTTTACCTAAGTGTCACTTTTAATGCCTTAAGTGAGATACCATCTTCATTGGTCACATTTTTCTTCATAGACAAGTTTAAAAGGAGAATTGCATTGTTTGTGTTTTGTATCATAAGTGGTGTTTTGAGTATAATGTCCACTATTGAAGGGGAACTATGGCGCAAGATGCAAATAGGGTTTGAGTTGATATCTTTTTTTAGTGCTTGCACTTCATTTAGTATTTACTTAATATACACAACTGAATTGTTTCCAACTTGTGTGAGGAATTCAGCTTTGTCTATGGCTAGGCTTGCTGTGGTGTTTGGTGGAGCTTTTAGTCCATTGTTGGTGGGTGCTGGTAGAGGAAATAAGTTTCTTTGTTATGGGGTTTTTGGGTTGGCTATTAGTTTTAGTGGAGTATTTGGAGTGTTCTTACCTGAGACAAAAGGGAGTGCCCTTTGTGATACAATGGATGAAGAAGAAAACAAAGATAAAATTTCTTGTGACATATTGGCTTGA
Protein sequence

>MS.gene42765.t1

MGDPTPLLSQPNNTSDTKTPPNKHLHSLGFTIEKCIGELNWSQFFQAVLISFAWIFDAQQTFITVFTDALPSWHCTGENIDILNGCYSTTSFNDVCKFPKGSWAWDGPAQASIISEWAMQCERSIITGLPASMFFMGCLVGGLFLSTLADSSSLGRKNMLFFSILLMALSSFFTTFSPNIWIYSLLKFLSGFGRATIGTSSLVLASELVGKRWRGKISVIGFFCFTIGFLSLPAMAYANKTSSWRNLYLWTSIPTIFYCMLVKIFVQESPRWLLLRGKKEEAIATLKYITSITQSNLNLSINNMSSHEEENNMNVDLFYALKLLLQKKWSSRRLLLIMALGFGIGVVYYGMPLGLGNLSFNLYLSVTFNALSEIPSSLVTFFFIDKFKRRIALFVFCIISGVLSIMSTIEGELWRKMQIGFELISFFSACTSFSIYLIYTTELFPTCVRNSALSMARLAVVFGGAFSPLLVGAGRGNKFLCYGVFGLAISFSGVFGVFLPETKGSALCDTMDEEENKDKISCDILA