Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42813.t1 | KEH40352.1 | 83.5 | 556 | 19 | 2 | 1 | 484 | 161 | 715 | 9.90E-268 | 932.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42813.t1 | P93604 | 56.5 | 310 | 129 | 4 | 147 | 453 | 326 | 632 | 9.2e-97 | 355.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42813.t1 | A0A072VF19 | 83.5 | 556 | 19 | 2 | 1 | 484 | 161 | 715 | 7.2e-268 | 932.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049259 | MS.gene42813 | 0.821643 | 3.62E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 94 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCCAAAGGTTTCGGATTT+TGG | 0.093382 | 1.4:+13263062 | MS.gene42813:CDS |
| GTCAACATTACTTCCCATTT+TGG | 0.159467 | 1.4:+13263285 | MS.gene42813:CDS |
| AATTGATCATAAATCCAAAA+TGG | 0.220679 | 1.4:-13263299 | None:intergenic |
| GAACTTCAAGACGAGATATT+TGG | 0.231981 | 1.4:+13262074 | MS.gene42813:intron |
| AATAGCTAAAAGGATGTTTA+TGG | 0.248427 | 1.4:+13263376 | MS.gene42813:CDS |
| AAAGGATCAACTCCTTCTTT+AGG | 0.267953 | 1.4:-13262909 | None:intergenic |
| AAGGATCAACTCCTTCTTTA+GGG | 0.270085 | 1.4:-13262908 | None:intergenic |
| TCTTTGTATTCATACCTAAT+AGG | 0.281926 | 1.4:-13262609 | None:intergenic |
| TAATCATGTGTATGCTGTTT+TGG | 0.298907 | 1.4:+13261517 | MS.gene42813:CDS |
| AAAGCAATCTAAATCCTATT+AGG | 0.315226 | 1.4:+13262595 | MS.gene42813:CDS |
| AGAGCGAGAGATTGAAATAA+TGG | 0.333699 | 1.4:+13263328 | MS.gene42813:CDS |
| GTTCCTCTTGCTGCAGTTAA+CGG | 0.362423 | 1.4:-13263122 | None:intergenic |
| AGGTAATGACAATAGCTAAA+AGG | 0.369801 | 1.4:+13263366 | MS.gene42813:CDS |
| CATCTATCTTCACAAATTAC+AGG | 0.372600 | 1.4:-13261698 | None:intergenic |
| GTATCGTGTCGAGGATATTA+AGG | 0.374033 | 1.4:+13261556 | MS.gene42813:CDS |
| TCAACTACTTTGTTCATTGA+AGG | 0.378540 | 1.4:-13263437 | None:intergenic |
| AGACTTCGTTCCAAAGGTTT+CGG | 0.379305 | 1.4:+13263055 | MS.gene42813:CDS |
| ACAAAGTCGAATGTTAATAA+TGG | 0.383958 | 1.4:+13262741 | MS.gene42813:CDS |
| AACTGCAGCAAGAGGAACTT+TGG | 0.385371 | 1.4:+13263127 | MS.gene42813:CDS |
| TTGATGGATTTGAGGTTTCA+TGG | 0.397100 | 1.4:+13261672 | MS.gene42813:CDS |
| AGCTATTGTCATTACCTCTT+CGG | 0.400013 | 1.4:-13263360 | None:intergenic |
| GTTACTTATGATGAGATTCA+TGG | 0.408473 | 1.4:+13261641 | MS.gene42813:CDS |
| AAAGCTGATGTATACAGCTT+TGG | 0.417793 | 1.4:+13263200 | MS.gene42813:CDS |
| AAATTAGGTCAAGGAGGCTT+TGG | 0.419451 | 1.4:+13262663 | MS.gene42813:CDS |
| AACATCTTTATTGCGACATC+CGG | 0.427112 | 1.4:-13262717 | None:intergenic |
| AAAATATATGAAATATCTCT+TGG | 0.431147 | 1.4:+13262942 | MS.gene42813:CDS |
| ATGAATGATTAGTCGAGGTT+TGG | 0.432228 | 1.4:-13263592 | None:intergenic |
| TACTTATCCAATGACCCATT+TGG | 0.432673 | 1.4:-13262879 | None:intergenic |
| TGGAATCACCCCATGAAGTA+TGG | 0.436249 | 1.4:-13263559 | None:intergenic |
| GTTTACGAATTCATGCCAAA+TGG | 0.439678 | 1.4:+13262864 | MS.gene42813:CDS |
| AAGAGGAACTTTGGGTTACA+TGG | 0.440726 | 1.4:+13263136 | MS.gene42813:CDS |
| TCAGCTCTGACCATACTTCA+TGG | 0.447472 | 1.4:+13263549 | MS.gene42813:CDS |
| AGTCCAAAATCCGAAACCTT+TGG | 0.455559 | 1.4:-13263065 | None:intergenic |
| TGATGGAAATGGCAGGTAAG+AGG | 0.459840 | 1.4:+13263231 | MS.gene42813:CDS |
| ATTCATGCCAAATGGGTCAT+TGG | 0.463583 | 1.4:+13262872 | MS.gene42813:CDS |
| AAGGTTATTGATGAAGAAAG+AGG | 0.464391 | 1.4:+13261740 | MS.gene42813:CDS |
| GTTAATGTGGTACGTCTTGT+TGG | 0.466725 | 1.4:+13262810 | MS.gene42813:CDS |
| ATTGATCATAAATCCAAAAT+GGG | 0.467202 | 1.4:-13263298 | None:intergenic |
| ACTGCAGCAAGAGGAACTTT+GGG | 0.467917 | 1.4:+13263128 | MS.gene42813:CDS |
| TTTACGAATTCATGCCAAAT+GGG | 0.470721 | 1.4:+13262865 | MS.gene42813:CDS |
| TGACTCGAGTGGGCTGCGTT+AGG | 0.473434 | 1.4:-13263266 | None:intergenic |
| GATGATAGTTGATGGATTTG+AGG | 0.477919 | 1.4:+13261664 | MS.gene42813:CDS |
| AAAGTAGTTGAGATGCTTGA+AGG | 0.480976 | 1.4:+13263449 | MS.gene42813:CDS |
| AAGGCCTCGGAGGCAATTCA+AGG | 0.498516 | 1.4:-13263487 | None:intergenic |
| ATTCATGGGATGATAGTTGA+TGG | 0.498842 | 1.4:+13261656 | MS.gene42813:CDS |
| AAAAGATCCACAGTACGTTA+AGG | 0.500880 | 1.4:+13261454 | MS.gene42813:CDS |
| ATTAATGAAGTTGCGACCAT+TGG | 0.502513 | 1.4:+13262774 | MS.gene42813:CDS |
| TGTGAAGATAGATGTGGAAA+GGG | 0.502933 | 1.4:+13261707 | MS.gene42813:CDS |
| CAGCTCTGACCATACTTCAT+GGG | 0.505440 | 1.4:+13263550 | MS.gene42813:CDS |
| CTTGTTGGATACTGTGTTGA+AGG | 0.514521 | 1.4:+13262825 | MS.gene42813:CDS |
| TTTAGAGTGAAATTAGGTCA+AGG | 0.515130 | 1.4:+13262654 | MS.gene42813:CDS |
| AACATGATGTATTCTTCCAA+TGG | 0.522782 | 1.4:-13262790 | None:intergenic |
| TGGGGTGATTCCACTAGCAT+TGG | 0.525969 | 1.4:+13263569 | MS.gene42813:CDS |
| TGGAAAGGGAACAAGTTGTA+AGG | 0.531094 | 1.4:+13261721 | MS.gene42813:CDS |
| CGAGGTTTGGCCAATGCTAG+TGG | 0.534594 | 1.4:-13263579 | None:intergenic |
| TTCATTGAAGGACGATCACT+CGG | 0.535905 | 1.4:-13263425 | None:intergenic |
| TCGTCTAGAAGAATATTATG+AGG | 0.537886 | 1.4:-13263032 | None:intergenic |
| TACATTGGGTAAGACACAAT+CGG | 0.538397 | 1.4:+13261601 | MS.gene42813:CDS |
| TTGTGAAGATAGATGTGGAA+AGG | 0.539269 | 1.4:+13261706 | MS.gene42813:CDS |
| CGTGTCGAGGATATTAAGGT+TGG | 0.542455 | 1.4:+13261560 | MS.gene42813:CDS |
| AAAGAAATCAAGAAGATGAC+GGG | 0.544440 | 1.4:+13262627 | MS.gene42813:CDS |
| AAGTAGTTGAGATGCTTGAA+GGG | 0.555652 | 1.4:+13263450 | MS.gene42813:CDS |
| TACAAAGGAAAACTAAGAAG+TGG | 0.557187 | 1.4:+13262693 | MS.gene42813:CDS |
| TATTGATGAAGAAAGAGGAG+AGG | 0.560981 | 1.4:+13261745 | MS.gene42813:CDS |
| AGACGAAGACTTCGTTCCAA+AGG | 0.561637 | 1.4:+13263049 | MS.gene42813:CDS |
| GGAACAATGCTATCGTTCAC+AGG | 0.564246 | 1.4:-13263101 | None:intergenic |
| ACACGATACTCATACAATGA+TGG | 0.567678 | 1.4:-13261542 | None:intergenic |
| CAAAGAAATCAAGAAGATGA+CGG | 0.569194 | 1.4:+13262626 | MS.gene42813:CDS |
| ACGAGTCGTTGTAGCACACA+TGG | 0.580928 | 1.4:+13261482 | MS.gene42813:CDS |
| GGAAGTAATGTTGACTCGAG+TGG | 0.583457 | 1.4:-13263277 | None:intergenic |
| ATATCTCTTGGAATAGCTCG+TGG | 0.587488 | 1.4:+13262954 | MS.gene42813:CDS |
| GAGATATTTGGTTATACTCG+TGG | 0.587543 | 1.4:+13262086 | MS.gene42813:CDS |
| AGGAAAACTAAGAAGTGGAC+CGG | 0.587745 | 1.4:+13262698 | MS.gene42813:CDS |
| TTACTTATGATGAGATTCAT+GGG | 0.591124 | 1.4:+13261642 | MS.gene42813:CDS |
| GTCAAATGAATGATTAGTCG+AGG | 0.593207 | 1.4:-13263597 | None:intergenic |
| GTTCCGTTAACTGCAGCAAG+AGG | 0.596221 | 1.4:+13263119 | MS.gene42813:CDS |
| GGCTTTGGTGCTGTATACAA+AGG | 0.610764 | 1.4:+13262678 | MS.gene42813:CDS |
| GAAGTAATGTTGACTCGAGT+GGG | 0.613420 | 1.4:-13263276 | None:intergenic |
| GGATGTTTATGGTTGCACTT+TGG | 0.618133 | 1.4:+13263387 | MS.gene42813:CDS |
| AAGAATACATCATGTTAATG+TGG | 0.629048 | 1.4:+13262797 | MS.gene42813:CDS |
| AGATCCACAGTACGTTAAGG+TGG | 0.634344 | 1.4:+13261457 | MS.gene42813:CDS |
| TATCTCTTGGAATAGCTCGT+GGG | 0.634752 | 1.4:+13262955 | MS.gene42813:CDS |
| GGCAGGTAAGAGGAAGAACT+CGG | 0.636870 | 1.4:+13263241 | MS.gene42813:CDS |
| GTGTCCACCTTAACGTACTG+TGG | 0.640555 | 1.4:-13261461 | None:intergenic |
| AGCTCTGACCATACTTCATG+GGG | 0.651007 | 1.4:+13263551 | MS.gene42813:CDS |
| AATGGAAGATGTCTCCGAAG+AGG | 0.651090 | 1.4:+13263346 | MS.gene42813:CDS |
| AAAGCCTTGAATTGCCTCCG+AGG | 0.652374 | 1.4:+13263483 | MS.gene42813:CDS |
| GTAATTTGTGAAGATAGATG+TGG | 0.652651 | 1.4:+13261701 | MS.gene42813:CDS |
| ATTGTATGAGTATCGTGTCG+AGG | 0.664969 | 1.4:+13261547 | MS.gene42813:CDS |
| GAAATCAAGAAGATGACGGG+AGG | 0.668171 | 1.4:+13262630 | MS.gene42813:CDS |
| AGAGTGAAATTAGGTCAAGG+AGG | 0.673716 | 1.4:+13262657 | MS.gene42813:CDS |
| CGAGTCGTTGTAGCACACAT+GGG | 0.685225 | 1.4:+13261483 | MS.gene42813:CDS |
| TATCAAACAACTGATAAGTG+CGG | 0.690952 | 1.4:+13261800 | MS.gene42813:CDS |
| GGGATAGAGTATCTGCATCG+AGG | 0.740829 | 1.4:+13262975 | MS.gene42813:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATGTATAATTTGA+TGG | + | chr1.4:13262166-13262185 | MS.gene42813:intron | 10.0% |
| !! | AAAATATATGAAATATCTCT+TGG | + | chr1.4:13262942-13262961 | MS.gene42813:CDS | 15.0% |
| !! | AAATCTTAATCAAACTACTT+AGG | - | chr1.4:13261859-13261878 | None:intergenic | 20.0% |
| !! | AATGTTATACCATTATTCTT+AGG | + | chr1.4:13262468-13262487 | MS.gene42813:intron | 20.0% |
| !! | AATTGATCATAAATCCAAAA+TGG | - | chr1.4:13263302-13263321 | None:intergenic | 20.0% |
| !! | ATTGATCATAAATCCAAAAT+GGG | - | chr1.4:13263301-13263320 | None:intergenic | 20.0% |
| !! | GAATTGTTCTACAAAAATAT+TGG | + | chr1.4:13263164-13263183 | MS.gene42813:CDS | 20.0% |
| !! | TATTTATCTATAAATGGAGA+AGG | + | chr1.4:13262529-13262548 | MS.gene42813:intron | 20.0% |
| !!! | ATATTTTTGTAGAACAATTC+AGG | - | chr1.4:13263164-13263183 | None:intergenic | 20.0% |
| !!! | CTAACTATATTATTGTTTTG+TGG | + | chr1.4:13262044-13262063 | MS.gene42813:intron | 20.0% |
| !!! | TTGTGCTATTTATCTATAAA+TGG | + | chr1.4:13262523-13262542 | MS.gene42813:intron | 20.0% |
| !!! | TTTTCATTTGCATAAAAAGA+AGG | - | chr1.4:13263509-13263528 | None:intergenic | 20.0% |
| ! | AAAGCAATCTAAATCCTATT+AGG | + | chr1.4:13262595-13262614 | MS.gene42813:CDS | 25.0% |
| ! | AAGAATACATCATGTTAATG+TGG | + | chr1.4:13262797-13262816 | MS.gene42813:CDS | 25.0% |
| ! | AATAGCTAAAAGGATGTTTA+TGG | + | chr1.4:13263376-13263395 | MS.gene42813:CDS | 25.0% |
| ! | ACAAAGTCGAATGTTAATAA+TGG | + | chr1.4:13262741-13262760 | MS.gene42813:CDS | 25.0% |
| ! | TCTTTGTATTCATACCTAAT+AGG | - | chr1.4:13262612-13262631 | None:intergenic | 25.0% |
| ! | TGCATAAGAGAATAATTAGA+AGG | - | chr1.4:13262254-13262273 | None:intergenic | 25.0% |
| ! | TTACTTATGATGAGATTCAT+GGG | + | chr1.4:13261642-13261661 | MS.gene42813:CDS | 25.0% |
| ! | TTATGATGAAATATCAATGC+AGG | + | chr1.4:13262357-13262376 | MS.gene42813:intron | 25.0% |
| ! | TTGTTCTACAAAAATATTGG+AGG | + | chr1.4:13263167-13263186 | MS.gene42813:CDS | 25.0% |
| ! | TTTGATGGAGGAATAATTAT+AGG | + | chr1.4:13262441-13262460 | MS.gene42813:intron | 25.0% |
| !! | ATTTTCTCTATTGAGTAACT+AGG | + | chr1.4:13262128-13262147 | MS.gene42813:intron | 25.0% |
| !! | TATATTTTCTCGTAACTCAA+AGG | - | chr1.4:13262930-13262949 | None:intergenic | 25.0% |
| !!! | TATCTTAGAGGCATTTTTAT+TGG | + | chr1.4:13262222-13262241 | MS.gene42813:CDS | 25.0% |
| AAAGAAATCAAGAAGATGAC+GGG | + | chr1.4:13262627-13262646 | MS.gene42813:CDS | 30.0% | |
| AACATGATGTATTCTTCCAA+TGG | - | chr1.4:13262793-13262812 | None:intergenic | 30.0% | |
| AAGGTTATTGATGAAGAAAG+AGG | + | chr1.4:13261740-13261759 | MS.gene42813:CDS | 30.0% | |
| AATCTGACTCCTAAGAATAA+TGG | - | chr1.4:13262480-13262499 | None:intergenic | 30.0% | |
| AGGTAATGACAATAGCTAAA+AGG | + | chr1.4:13263366-13263385 | MS.gene42813:CDS | 30.0% | |
| ATAAGTGCGGTATGTATTAT+TGG | + | chr1.4:13261813-13261832 | MS.gene42813:intron | 30.0% | |
| CAAAGAAATCAAGAAGATGA+CGG | + | chr1.4:13262626-13262645 | MS.gene42813:CDS | 30.0% | |
| CATCTATCTTCACAAATTAC+AGG | - | chr1.4:13261701-13261720 | None:intergenic | 30.0% | |
| GTTACTTATGATGAGATTCA+TGG | + | chr1.4:13261641-13261660 | MS.gene42813:CDS | 30.0% | |
| TACAAAGGAAAACTAAGAAG+TGG | + | chr1.4:13262693-13262712 | MS.gene42813:CDS | 30.0% | |
| TATCAAACAACTGATAAGTG+CGG | + | chr1.4:13261800-13261819 | MS.gene42813:CDS | 30.0% | |
| TCAAAATATTCTAGTCCAAC+TGG | - | chr1.4:13262426-13262445 | None:intergenic | 30.0% | |
| TCAACTACTTTGTTCATTGA+AGG | - | chr1.4:13263440-13263459 | None:intergenic | 30.0% | |
| TCGTCTAGAAGAATATTATG+AGG | - | chr1.4:13263035-13263054 | None:intergenic | 30.0% | |
| TTAGGAGTCAGATTTCTATT+TGG | + | chr1.4:13262486-13262505 | MS.gene42813:intron | 30.0% | |
| TTTACGAATTCATGCCAAAT+GGG | + | chr1.4:13262865-13262884 | MS.gene42813:CDS | 30.0% | |
| ! | AAGTACATTTTCCCTAAAGA+AGG | + | chr1.4:13262897-13262916 | MS.gene42813:CDS | 30.0% |
| ! | AGACACAATTTCCTTTTGAA+TGG | + | chr1.4:13261961-13261980 | MS.gene42813:intron | 30.0% |
| ! | GACACAATTTCCTTTTGAAT+GGG | + | chr1.4:13261962-13261981 | MS.gene42813:intron | 30.0% |
| ! | GTAATTTGTGAAGATAGATG+TGG | + | chr1.4:13261701-13261720 | MS.gene42813:CDS | 30.0% |
| ! | TGTCTTTGTAATCTGAAGTT+CGG | - | chr1.4:13261946-13261965 | None:intergenic | 30.0% |
| ! | TTTAGAGTGAAATTAGGTCA+AGG | + | chr1.4:13262654-13262673 | MS.gene42813:CDS | 30.0% |
| !! | GTTGGACTAGAATATTTTGA+TGG | + | chr1.4:13262426-13262445 | MS.gene42813:intron | 30.0% |
| !! | TAAGGTTGGTTGTGATTTTA+TGG | + | chr1.4:13261574-13261593 | MS.gene42813:CDS | 30.0% |
| !! | TAATCATGTGTATGCTGTTT+TGG | + | chr1.4:13261517-13261536 | MS.gene42813:CDS | 30.0% |
| !!! | TTTTTTGCAGCTTATCTTAG+AGG | + | chr1.4:13262210-13262229 | MS.gene42813:intron | 30.0% |
| AAAAGATCCACAGTACGTTA+AGG | + | chr1.4:13261454-13261473 | MS.gene42813:CDS | 35.0% | |
| AAAGCTGATGTATACAGCTT+TGG | + | chr1.4:13263200-13263219 | MS.gene42813:CDS | 35.0% | |
| AAAGGATCAACTCCTTCTTT+AGG | - | chr1.4:13262912-13262931 | None:intergenic | 35.0% | |
| AAAGTAGTTGAGATGCTTGA+AGG | + | chr1.4:13263449-13263468 | MS.gene42813:CDS | 35.0% | |
| AACATCTTTATTGCGACATC+CGG | - | chr1.4:13262720-13262739 | None:intergenic | 35.0% | |
| AAGGATCAACTCCTTCTTTA+GGG | - | chr1.4:13262911-13262930 | None:intergenic | 35.0% | |
| AAGTAGTTGAGATGCTTGAA+GGG | + | chr1.4:13263450-13263469 | MS.gene42813:CDS | 35.0% | |
| ACACGATACTCATACAATGA+TGG | - | chr1.4:13261545-13261564 | None:intergenic | 35.0% | |
| AGAGCGAGAGATTGAAATAA+TGG | + | chr1.4:13263328-13263347 | MS.gene42813:CDS | 35.0% | |
| AGCTATTGTCATTACCTCTT+CGG | - | chr1.4:13263363-13263382 | None:intergenic | 35.0% | |
| ATTAATGAAGTTGCGACCAT+TGG | + | chr1.4:13262774-13262793 | MS.gene42813:CDS | 35.0% | |
| ATTCATGGGATGATAGTTGA+TGG | + | chr1.4:13261656-13261675 | MS.gene42813:CDS | 35.0% | |
| ATTTGGTTATACTCGTGGTA+TGG | + | chr1.4:13262091-13262110 | MS.gene42813:intron | 35.0% | |
| GAACTTCAAGACGAGATATT+TGG | + | chr1.4:13262074-13262093 | MS.gene42813:intron | 35.0% | |
| GACATTTAGCACAAGACAAT+TGG | + | chr1.4:13262395-13262414 | MS.gene42813:intron | 35.0% | |
| GAGATATTTGGTTATACTCG+TGG | + | chr1.4:13262086-13262105 | MS.gene42813:CDS | 35.0% | |
| GTTTACGAATTCATGCCAAA+TGG | + | chr1.4:13262864-13262883 | MS.gene42813:CDS | 35.0% | |
| TACATTGGGTAAGACACAAT+CGG | + | chr1.4:13261601-13261620 | MS.gene42813:CDS | 35.0% | |
| TACTTATCCAATGACCCATT+TGG | - | chr1.4:13262882-13262901 | None:intergenic | 35.0% | |
| TATTGATGAAGAAAGAGGAG+AGG | + | chr1.4:13261745-13261764 | MS.gene42813:CDS | 35.0% | |
| TGAAATATCAATGCAGGACT+TGG | + | chr1.4:13262363-13262382 | MS.gene42813:intron | 35.0% | |
| TGTGAAGATAGATGTGGAAA+GGG | + | chr1.4:13261707-13261726 | MS.gene42813:CDS | 35.0% | |
| TTGTGAAGATAGATGTGGAA+AGG | + | chr1.4:13261706-13261725 | MS.gene42813:CDS | 35.0% | |
| TTTGCATAAAAAGAAGGCCT+CGG | - | chr1.4:13263503-13263522 | None:intergenic | 35.0% | |
| ! | ACAATTTCCTTTTGAATGGG+AGG | + | chr1.4:13261965-13261984 | MS.gene42813:intron | 35.0% |
| ! | ATGAATGATTAGTCGAGGTT+TGG | - | chr1.4:13263595-13263614 | None:intergenic | 35.0% |
| ! | CAATTTCCTTTTGAATGGGA+GGG | + | chr1.4:13261966-13261985 | MS.gene42813:intron | 35.0% |
| ! | GATTTTATGGTGGCTACATT+GGG | + | chr1.4:13261587-13261606 | MS.gene42813:CDS | 35.0% |
| ! | GTCAAATGAATGATTAGTCG+AGG | - | chr1.4:13263600-13263619 | None:intergenic | 35.0% |
| ! | GTCAACATTACTTCCCATTT+TGG | + | chr1.4:13263285-13263304 | MS.gene42813:CDS | 35.0% |
| ! | TGATTTTATGGTGGCTACAT+TGG | + | chr1.4:13261586-13261605 | MS.gene42813:CDS | 35.0% |
| ! | TGGAATGCTTTTGATGGAAA+TGG | + | chr1.4:13263220-13263239 | MS.gene42813:CDS | 35.0% |
| !! | GATGATAGTTGATGGATTTG+AGG | + | chr1.4:13261664-13261683 | MS.gene42813:CDS | 35.0% |
| !! | TTGATGGATTTGAGGTTTCA+TGG | + | chr1.4:13261672-13261691 | MS.gene42813:CDS | 35.0% |
| !!! | GGACTAGAATATTTTGATGG+AGG | + | chr1.4:13262429-13262448 | MS.gene42813:intron | 35.0% |
| !!! | GGAGGTTTTAGAGTGAAATT+AGG | + | chr1.4:13262648-13262667 | MS.gene42813:CDS | 35.0% |
| AAATTAGGTCAAGGAGGCTT+TGG | + | chr1.4:13262663-13262682 | MS.gene42813:CDS | 40.0% | |
| AGACAATTGGACAATCCAGT+TGG | + | chr1.4:13262408-13262427 | MS.gene42813:intron | 40.0% | |
| AGACTTCGTTCCAAAGGTTT+CGG | + | chr1.4:13263055-13263074 | MS.gene42813:CDS | 40.0% | |
| AGAGTGAAATTAGGTCAAGG+AGG | + | chr1.4:13262657-13262676 | MS.gene42813:CDS | 40.0% | |
| AGGAAAACTAAGAAGTGGAC+CGG | + | chr1.4:13262698-13262717 | MS.gene42813:CDS | 40.0% | |
| AGTCCAAAATCCGAAACCTT+TGG | - | chr1.4:13263068-13263087 | None:intergenic | 40.0% | |
| ATATCTCTTGGAATAGCTCG+TGG | + | chr1.4:13262954-13262973 | MS.gene42813:CDS | 40.0% | |
| ATTCATGCCAAATGGGTCAT+TGG | + | chr1.4:13262872-13262891 | MS.gene42813:CDS | 40.0% | |
| CTACTTAGGAAGTCAGAAAG+TGG | - | chr1.4:13261845-13261864 | None:intergenic | 40.0% | |
| CTTGTTGGATACTGTGTTGA+AGG | + | chr1.4:13262825-13262844 | MS.gene42813:CDS | 40.0% | |
| GGATGTTTATGGTTGCACTT+TGG | + | chr1.4:13263387-13263406 | MS.gene42813:CDS | 40.0% | |
| GTATCGTGTCGAGGATATTA+AGG | + | chr1.4:13261556-13261575 | MS.gene42813:CDS | 40.0% | |
| GTTAATGTGGTACGTCTTGT+TGG | + | chr1.4:13262810-13262829 | MS.gene42813:CDS | 40.0% | |
| TATCTCTTGGAATAGCTCGT+GGG | + | chr1.4:13262955-13262974 | MS.gene42813:CDS | 40.0% | |
| TCTTATCCCTCCCATTCAAA+AGG | - | chr1.4:13261975-13261994 | None:intergenic | 40.0% | |
| TGGAAAGGGAACAAGTTGTA+AGG | + | chr1.4:13261721-13261740 | MS.gene42813:CDS | 40.0% | |
| TTCATTGAAGGACGATCACT+CGG | - | chr1.4:13263428-13263447 | None:intergenic | 40.0% | |
| ! | AAGAGGAACTTTGGGTTACA+TGG | + | chr1.4:13263136-13263155 | MS.gene42813:CDS | 40.0% |
| ! | ATGCTTTTGATGGAAATGGC+AGG | + | chr1.4:13263224-13263243 | MS.gene42813:CDS | 40.0% |
| ! | ATTGTATGAGTATCGTGTCG+AGG | + | chr1.4:13261547-13261566 | MS.gene42813:CDS | 40.0% |
| ! | GTTCCAAAGGTTTCGGATTT+TGG | + | chr1.4:13263062-13263081 | MS.gene42813:CDS | 40.0% |
| !! | GAAGTAATGTTGACTCGAGT+GGG | - | chr1.4:13263279-13263298 | None:intergenic | 40.0% |
| !! | GGTTGGTTGTGATTTTATGG+TGG | + | chr1.4:13261577-13261596 | MS.gene42813:CDS | 40.0% |
| !!! | CAGCTTTGGAATGCTTTTGA+TGG | + | chr1.4:13263214-13263233 | MS.gene42813:CDS | 40.0% |
| AACTGCAGCAAGAGGAACTT+TGG | + | chr1.4:13263127-13263146 | MS.gene42813:CDS | 45.0% | |
| AATGGAAGATGTCTCCGAAG+AGG | + | chr1.4:13263346-13263365 | MS.gene42813:CDS | 45.0% | |
| ACTGCAGCAAGAGGAACTTT+GGG | + | chr1.4:13263128-13263147 | MS.gene42813:CDS | 45.0% | |
| AGACGAAGACTTCGTTCCAA+AGG | + | chr1.4:13263049-13263068 | MS.gene42813:CDS | 45.0% | |
| AGATCCACAGTACGTTAAGG+TGG | + | chr1.4:13261457-13261476 | MS.gene42813:CDS | 45.0% | |
| CGTGTCGAGGATATTAAGGT+TGG | + | chr1.4:13261560-13261579 | MS.gene42813:CDS | 45.0% | |
| GGAACAATGCTATCGTTCAC+AGG | - | chr1.4:13263104-13263123 | None:intergenic | 45.0% | |
| GTTCCTCTTGCTGCAGTTAA+CGG | - | chr1.4:13263125-13263144 | None:intergenic | 45.0% | |
| TGATGGAAATGGCAGGTAAG+AGG | + | chr1.4:13263231-13263250 | MS.gene42813:CDS | 45.0% | |
| TGGAATCACCCCATGAAGTA+TGG | - | chr1.4:13263562-13263581 | None:intergenic | 45.0% | |
| ! | AGCTCTGACCATACTTCATG+GGG | + | chr1.4:13263551-13263570 | MS.gene42813:CDS | 45.0% |
| ! | CAGCTCTGACCATACTTCAT+GGG | + | chr1.4:13263550-13263569 | MS.gene42813:CDS | 45.0% |
| ! | TCAGCTCTGACCATACTTCA+TGG | + | chr1.4:13263549-13263568 | MS.gene42813:CDS | 45.0% |
| !! | GAAATCAAGAAGATGACGGG+AGG | + | chr1.4:13262630-13262649 | MS.gene42813:CDS | 45.0% |
| !! | GGAAGTAATGTTGACTCGAG+TGG | - | chr1.4:13263280-13263299 | None:intergenic | 45.0% |
| !! | GGCTTTGGTGCTGTATACAA+AGG | + | chr1.4:13262678-13262697 | MS.gene42813:CDS | 45.0% |
| AAAGCCTTGAATTGCCTCCG+AGG | + | chr1.4:13263483-13263502 | MS.gene42813:CDS | 50.0% | |
| ACGAGTCGTTGTAGCACACA+TGG | + | chr1.4:13261482-13261501 | MS.gene42813:CDS | 50.0% | |
| CGAGTCGTTGTAGCACACAT+GGG | + | chr1.4:13261483-13261502 | MS.gene42813:CDS | 50.0% | |
| GCATAAAAAGAAGGCCTCGG+AGG | - | chr1.4:13263500-13263519 | None:intergenic | 50.0% | |
| GGCAGGTAAGAGGAAGAACT+CGG | + | chr1.4:13263241-13263260 | MS.gene42813:CDS | 50.0% | |
| GTGTCCACCTTAACGTACTG+TGG | - | chr1.4:13261464-13261483 | None:intergenic | 50.0% | |
| GTTCCGTTAACTGCAGCAAG+AGG | + | chr1.4:13263119-13263138 | MS.gene42813:CDS | 50.0% | |
| TGGGGTGATTCCACTAGCAT+TGG | + | chr1.4:13263569-13263588 | MS.gene42813:CDS | 50.0% | |
| ! | GGGATAGAGTATCTGCATCG+AGG | + | chr1.4:13262975-13262994 | MS.gene42813:CDS | 50.0% |
| AAGGCCTCGGAGGCAATTCA+AGG | - | chr1.4:13263490-13263509 | None:intergenic | 55.0% | |
| CGAGGTTTGGCCAATGCTAG+TGG | - | chr1.4:13263582-13263601 | None:intergenic | 55.0% | |
| !! | TGACTCGAGTGGGCTGCGTT+AGG | - | chr1.4:13263269-13263288 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 13261453 | 13263625 | 13261453 | ID=MS.gene42813 |
| chr1.4 | mRNA | 13261453 | 13263625 | 13261453 | ID=MS.gene42813.t1;Parent=MS.gene42813 |
| chr1.4 | exon | 13261453 | 13261821 | 13261453 | ID=MS.gene42813.t1.exon1;Parent=MS.gene42813.t1 |
| chr1.4 | CDS | 13261453 | 13261821 | 13261453 | ID=cds.MS.gene42813.t1;Parent=MS.gene42813.t1 |
| chr1.4 | exon | 13262075 | 13262107 | 13262075 | ID=MS.gene42813.t1.exon2;Parent=MS.gene42813.t1 |
| chr1.4 | CDS | 13262075 | 13262107 | 13262075 | ID=cds.MS.gene42813.t1;Parent=MS.gene42813.t1 |
| chr1.4 | exon | 13262220 | 13262243 | 13262220 | ID=MS.gene42813.t1.exon3;Parent=MS.gene42813.t1 |
| chr1.4 | CDS | 13262220 | 13262243 | 13262220 | ID=cds.MS.gene42813.t1;Parent=MS.gene42813.t1 |
| chr1.4 | exon | 13262595 | 13263625 | 13262595 | ID=MS.gene42813.t1.exon4;Parent=MS.gene42813.t1 |
| chr1.4 | CDS | 13262595 | 13263625 | 13262595 | ID=cds.MS.gene42813.t1;Parent=MS.gene42813.t1 |
| Gene Sequence |
| Protein sequence |
