Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42874.t1 | XP_003623411.2 | 97.2 | 436 | 12 | 0 | 1 | 436 | 17 | 452 | 7.40E-238 | 832.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42874.t1 | Q9SCU1 | 72.9 | 399 | 103 | 2 | 22 | 420 | 11 | 404 | 3.4e-167 | 589.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42874.t1 | G7KU47 | 97.2 | 436 | 12 | 0 | 1 | 436 | 1 | 436 | 5.3e-238 | 832.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene42874 | 0.810178 | 1.31E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42874.t1 | MTR_7g070480 | 97.248 | 436 | 12 | 0 | 1 | 436 | 1 | 436 | 0.0 | 874 |
| MS.gene42874.t1 | MTR_4g013300 | 74.760 | 416 | 95 | 4 | 15 | 420 | 31 | 446 | 0.0 | 645 |
| MS.gene42874.t1 | MTR_8g095360 | 43.510 | 416 | 219 | 10 | 1 | 411 | 87 | 491 | 1.36e-113 | 343 |
| MS.gene42874.t1 | MTR_2g031610 | 42.890 | 429 | 192 | 9 | 45 | 426 | 46 | 468 | 4.27e-113 | 340 |
| MS.gene42874.t1 | MTR_4g033435 | 48.193 | 332 | 163 | 6 | 85 | 411 | 257 | 584 | 5.55e-107 | 328 |
| MS.gene42874.t1 | MTR_3g097350 | 48.476 | 328 | 159 | 7 | 84 | 406 | 234 | 556 | 1.44e-105 | 324 |
| MS.gene42874.t1 | MTR_1g069915 | 39.339 | 333 | 191 | 6 | 84 | 411 | 131 | 457 | 2.66e-77 | 248 |
| MS.gene42874.t1 | MTR_4g033435 | 52.133 | 211 | 94 | 4 | 85 | 291 | 257 | 464 | 3.33e-72 | 234 |
| MS.gene42874.t1 | MTR_8g096170 | 27.982 | 218 | 142 | 5 | 98 | 313 | 50 | 254 | 1.81e-17 | 82.0 |
| MS.gene42874.t1 | MTR_3g098530 | 26.887 | 212 | 140 | 4 | 95 | 304 | 64 | 262 | 2.94e-17 | 82.0 |
| MS.gene42874.t1 | MTR_8g096180 | 27.751 | 209 | 136 | 5 | 98 | 304 | 47 | 242 | 3.17e-16 | 78.6 |
| MS.gene42874.t1 | MTR_5g021050 | 27.556 | 225 | 141 | 7 | 100 | 310 | 76 | 292 | 6.63e-16 | 80.1 |
| MS.gene42874.t1 | MTR_5g021050 | 27.556 | 225 | 141 | 7 | 100 | 310 | 76 | 292 | 7.64e-16 | 79.7 |
| MS.gene42874.t1 | MTR_3g117100 | 25.566 | 309 | 192 | 10 | 26 | 310 | 32 | 326 | 1.38e-15 | 79.3 |
| MS.gene42874.t1 | MTR_1g062480 | 52.542 | 59 | 19 | 1 | 260 | 318 | 43 | 92 | 1.34e-14 | 69.7 |
| MS.gene42874.t1 | MTR_8g096180 | 26.606 | 218 | 137 | 5 | 98 | 304 | 47 | 252 | 1.89e-14 | 73.6 |
| MS.gene42874.t1 | MTR_4g070810 | 27.149 | 221 | 135 | 8 | 100 | 304 | 107 | 317 | 3.50e-14 | 75.1 |
| MS.gene42874.t1 | MTR_1g022480 | 26.027 | 219 | 140 | 8 | 100 | 304 | 112 | 322 | 1.43e-13 | 73.2 |
| MS.gene42874.t1 | MTR_1g022480 | 26.027 | 219 | 140 | 8 | 100 | 304 | 112 | 322 | 1.57e-13 | 73.2 |
| MS.gene42874.t1 | MTR_1g022480 | 26.027 | 219 | 140 | 8 | 100 | 304 | 112 | 322 | 1.78e-13 | 72.8 |
| MS.gene42874.t1 | MTR_3g112150 | 26.818 | 220 | 137 | 8 | 100 | 304 | 93 | 303 | 2.13e-13 | 72.4 |
| MS.gene42874.t1 | MTR_4g070790 | 26.484 | 219 | 139 | 7 | 100 | 304 | 84 | 294 | 2.16e-13 | 72.0 |
| MS.gene42874.t1 | MTR_4g070720 | 25.893 | 224 | 146 | 6 | 100 | 310 | 96 | 312 | 5.40e-13 | 71.2 |
| MS.gene42874.t1 | MTR_3g117090 | 26.339 | 224 | 145 | 6 | 100 | 310 | 97 | 313 | 6.70e-13 | 70.9 |
| MS.gene42874.t1 | MTR_3g117090 | 26.339 | 224 | 145 | 6 | 100 | 310 | 97 | 313 | 6.96e-13 | 70.9 |
| MS.gene42874.t1 | MTR_7g056587 | 23.108 | 251 | 155 | 9 | 46 | 279 | 57 | 286 | 9.57e-12 | 67.4 |
| MS.gene42874.t1 | MTR_7g056587 | 23.108 | 251 | 155 | 9 | 46 | 279 | 65 | 294 | 9.81e-12 | 67.4 |
| MS.gene42874.t1 | MTR_7g056587 | 23.108 | 251 | 155 | 9 | 46 | 279 | 79 | 308 | 9.87e-12 | 67.4 |
| MS.gene42874.t1 | MTR_7g056587 | 23.108 | 251 | 155 | 9 | 46 | 279 | 65 | 294 | 1.20e-11 | 67.0 |
| MS.gene42874.t1 | MTR_8g076880 | 26.786 | 224 | 144 | 6 | 100 | 310 | 79 | 295 | 1.47e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42874.t1 | AT3G51670 | 72.932 | 399 | 103 | 2 | 22 | 420 | 11 | 404 | 0.0 | 609 |
| MS.gene42874.t1 | AT4G09160 | 47.532 | 385 | 185 | 10 | 44 | 419 | 262 | 638 | 1.43e-111 | 342 |
| MS.gene42874.t1 | AT4G09160 | 47.532 | 385 | 185 | 10 | 44 | 419 | 262 | 638 | 1.47e-111 | 342 |
| MS.gene42874.t1 | AT4G09160 | 47.532 | 385 | 185 | 10 | 44 | 419 | 287 | 663 | 2.40e-111 | 342 |
| MS.gene42874.t1 | AT1G72160 | 46.373 | 386 | 189 | 11 | 47 | 419 | 108 | 488 | 4.78e-110 | 333 |
| MS.gene42874.t1 | AT1G30690 | 45.217 | 345 | 171 | 8 | 79 | 416 | 199 | 532 | 8.75e-99 | 306 |
| MS.gene42874.t1 | AT1G30690 | 45.217 | 345 | 171 | 8 | 79 | 416 | 199 | 532 | 8.75e-99 | 306 |
| MS.gene42874.t1 | AT1G22530 | 43.582 | 335 | 171 | 9 | 84 | 411 | 318 | 641 | 3.45e-85 | 273 |
| MS.gene42874.t1 | AT1G22530 | 43.284 | 335 | 172 | 9 | 84 | 411 | 352 | 675 | 5.31e-85 | 274 |
| MS.gene42874.t1 | AT1G72150 | 39.528 | 339 | 188 | 10 | 84 | 416 | 243 | 570 | 3.81e-75 | 245 |
| MS.gene42874.t1 | AT2G21540 | 28.000 | 225 | 140 | 7 | 100 | 310 | 95 | 311 | 6.46e-16 | 80.5 |
| MS.gene42874.t1 | AT2G21540 | 28.000 | 225 | 140 | 7 | 100 | 310 | 95 | 311 | 6.46e-16 | 80.5 |
| MS.gene42874.t1 | AT2G21540 | 28.000 | 225 | 140 | 7 | 100 | 310 | 95 | 311 | 6.46e-16 | 80.5 |
| MS.gene42874.t1 | AT2G21540 | 28.000 | 225 | 140 | 7 | 100 | 310 | 95 | 311 | 6.46e-16 | 80.5 |
| MS.gene42874.t1 | AT2G21540 | 28.000 | 225 | 140 | 7 | 100 | 310 | 95 | 311 | 6.56e-16 | 80.1 |
| MS.gene42874.t1 | AT2G21540 | 28.000 | 225 | 140 | 7 | 100 | 310 | 95 | 311 | 6.56e-16 | 80.1 |
| MS.gene42874.t1 | AT4G39180 | 28.000 | 225 | 140 | 7 | 100 | 310 | 96 | 312 | 1.03e-15 | 79.7 |
| MS.gene42874.t1 | AT4G39180 | 28.000 | 225 | 140 | 7 | 100 | 310 | 96 | 312 | 1.03e-15 | 79.7 |
| MS.gene42874.t1 | AT4G39180 | 28.000 | 225 | 140 | 7 | 100 | 310 | 96 | 312 | 1.04e-15 | 79.7 |
| MS.gene42874.t1 | AT4G34580 | 27.434 | 226 | 140 | 8 | 100 | 310 | 88 | 304 | 4.35e-15 | 77.8 |
| MS.gene42874.t1 | AT4G34580 | 27.434 | 226 | 140 | 8 | 100 | 310 | 88 | 304 | 4.35e-15 | 77.8 |
| MS.gene42874.t1 | AT4G36490 | 27.111 | 225 | 142 | 7 | 100 | 310 | 78 | 294 | 8.95e-15 | 76.6 |
| MS.gene42874.t1 | AT4G39170 | 25.090 | 279 | 168 | 10 | 26 | 279 | 32 | 294 | 3.62e-14 | 75.1 |
| MS.gene42874.t1 | AT4G39170 | 25.090 | 279 | 168 | 10 | 26 | 279 | 32 | 294 | 3.89e-14 | 75.1 |
| MS.gene42874.t1 | AT2G16380 | 27.468 | 233 | 145 | 8 | 92 | 310 | 82 | 304 | 5.86e-14 | 74.3 |
| MS.gene42874.t1 | AT2G16380 | 27.468 | 233 | 145 | 8 | 92 | 310 | 82 | 304 | 5.86e-14 | 74.3 |
| MS.gene42874.t1 | AT2G21520 | 25.128 | 195 | 123 | 6 | 100 | 279 | 114 | 300 | 1.02e-12 | 70.5 |
| MS.gene42874.t1 | AT2G21520 | 25.128 | 195 | 123 | 6 | 100 | 279 | 114 | 300 | 1.02e-12 | 70.5 |
| MS.gene42874.t1 | AT2G21520 | 25.128 | 195 | 123 | 6 | 100 | 279 | 110 | 296 | 1.23e-12 | 70.1 |
| MS.gene42874.t1 | AT1G01630 | 23.364 | 214 | 145 | 4 | 95 | 304 | 47 | 245 | 1.25e-12 | 68.2 |
| MS.gene42874.t1 | AT1G55840 | 25.116 | 215 | 131 | 8 | 101 | 299 | 39 | 239 | 4.20e-11 | 64.3 |
| MS.gene42874.t1 | AT1G55840 | 25.116 | 215 | 131 | 8 | 101 | 299 | 12 | 212 | 4.72e-11 | 63.9 |
Find 67 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTGAGTTCACTGTTAA+AGG | 0.184177 | 7.2:-32988850 | MS.gene42874:CDS |
| GTGAACTCAGAAGCTGGTTT+TGG | 0.239830 | 7.2:+32988859 | None:intergenic |
| TTCCATTAATGTTGTGACTA+TGG | 0.244429 | 7.2:+32990298 | None:intergenic |
| AACCATAGTCACAACATTAA+TGG | 0.252522 | 7.2:-32990300 | MS.gene42874:CDS |
| TTTGAGGTTGGAAATGAAAT+AGG | 0.258263 | 7.2:+32990238 | None:intergenic |
| ACCTTACGAGCAACCATTTC+AGG | 0.266158 | 7.2:+32989666 | None:intergenic |
| CAGTCGATAACTCTGCTTCT+AGG | 0.300587 | 7.2:-32987927 | MS.gene42874:CDS |
| TGCTTGTGAAGTGTCTTTCT+TGG | 0.302342 | 7.2:-32990040 | MS.gene42874:CDS |
| AAATGTTGTGGATGAAGATT+TGG | 0.311161 | 7.2:-32989997 | MS.gene42874:CDS |
| AGTAGTTGGAGGCTGGGATT+TGG | 0.321986 | 7.2:-32988085 | MS.gene42874:CDS |
| GATTCAAGTTACTGATCTTA+AGG | 0.332587 | 7.2:-32989754 | MS.gene42874:CDS |
| GAGAATATTCCTATTCAATA+TGG | 0.337092 | 7.2:-32988919 | MS.gene42874:CDS |
| ATCAAAAGAAGCAGGCATTA+TGG | 0.355456 | 7.2:-32987956 | MS.gene42874:CDS |
| CTTTCTTGGAGGAAAGAGTT+TGG | 0.366313 | 7.2:-32990026 | MS.gene42874:CDS |
| TTAGTTCTTTGAGTCAGAAA+TGG | 0.368588 | 7.2:+32989236 | None:intergenic |
| GGGAGATAGTAGTTGGAGGC+TGG | 0.373401 | 7.2:-32988092 | MS.gene42874:CDS |
| CTCTGCTTCTAGGAAGAAAA+AGG | 0.381694 | 7.2:-32987917 | MS.gene42874:CDS |
| AAGGAAAAGCTCTTAACTTC+TGG | 0.387606 | 7.2:-32990185 | MS.gene42874:CDS |
| TTTCTTGGAGTTTCTAGAAA+TGG | 0.388074 | 7.2:+32990347 | None:intergenic |
| ACAACCCTTAACTCACTCTT+AGG | 0.396909 | 7.2:+32989726 | None:intergenic |
| GAGCAAGTTTGTGATCTCTA+AGG | 0.402946 | 7.2:-32989213 | MS.gene42874:CDS |
| TCAAGATAACTATCCTGAAA+TGG | 0.404693 | 7.2:-32989679 | MS.gene42874:CDS |
| GTGTAGCTAGCTTCTGCATT+CGG | 0.418762 | 7.2:+32988042 | None:intergenic |
| TTTCTAGAAATGGTGTGCTT+AGG | 0.436314 | 7.2:+32990357 | None:intergenic |
| AATGTTGTGGATGAAGATTT+GGG | 0.445253 | 7.2:-32989996 | MS.gene42874:CDS |
| CTCAATCCACCATATTGAAT+AGG | 0.453387 | 7.2:+32988910 | None:intergenic |
| TCCTGAAATGGTTGCTCGTA+AGG | 0.456947 | 7.2:-32989667 | MS.gene42874:intron |
| GGAGATAGTAGTTGGAGGCT+GGG | 0.460626 | 7.2:-32988091 | MS.gene42874:CDS |
| AAAGTGAACATACAAATAGA+AGG | 0.473146 | 7.2:-32988820 | MS.gene42874:CDS |
| ATATGCCTAAGAGTGAGTTA+AGG | 0.474991 | 7.2:-32989731 | MS.gene42874:CDS |
| ATCAAAGAATTCACCCCACC+AGG | 0.485860 | 7.2:+32989774 | None:intergenic |
| TATGCCTAAGAGTGAGTTAA+GGG | 0.489546 | 7.2:-32989730 | MS.gene42874:CDS |
| ATCAAGTGGGAGATAGTAGT+TGG | 0.490971 | 7.2:-32988099 | MS.gene42874:CDS |
| CCTGTGTGTTACAATCATTA+TGG | 0.491385 | 7.2:-32989915 | MS.gene42874:CDS |
| TTGTGAAGTGTCTTTCTTGG+AGG | 0.498038 | 7.2:-32990037 | MS.gene42874:CDS |
| AAAAGCATTGAAACAGTTGA+AGG | 0.500192 | 7.2:-32990204 | MS.gene42874:CDS |
| TTATGGTGTGTTCAAAGATA+AGG | 0.503248 | 7.2:-32989898 | MS.gene42874:CDS |
| TTGGGATTCAAAGAGCTTGA+AGG | 0.513195 | 7.2:-32989978 | MS.gene42874:CDS |
| TTAACAGTGAACTCAGAAGC+TGG | 0.523617 | 7.2:+32988853 | None:intergenic |
| TTTCTCAGAGGATTTGAGGT+TGG | 0.524320 | 7.2:+32990226 | None:intergenic |
| AATATTCCTATTCAATATGG+TGG | 0.536024 | 7.2:-32988916 | MS.gene42874:CDS |
| AGGCTTAATTGCATATCAGA+TGG | 0.543533 | 7.2:+32987850 | None:intergenic |
| TTTACAGTTTAAACCTGGTG+GGG | 0.553174 | 7.2:-32989787 | MS.gene42874:CDS |
| TAAGCCTCAAAATCAAATAG+TGG | 0.553201 | 7.2:-32987834 | None:intergenic |
| TCATTCACATCAAAAGAAGC+AGG | 0.559078 | 7.2:-32987964 | MS.gene42874:CDS |
| TATTGAATAGGAATATTCTC+AGG | 0.562576 | 7.2:+32988922 | None:intergenic |
| GGGTTCAAGTTCTTGAGAGA+GGG | 0.569611 | 7.2:-32989818 | MS.gene42874:CDS |
| GATCAAACTAACACCCCACA+TGG | 0.577251 | 7.2:+32990142 | None:intergenic |
| AACAACAATGGTTCCATGTG+GGG | 0.581025 | 7.2:-32990155 | MS.gene42874:CDS |
| CAACAACAATGGTTCCATGT+GGG | 0.588302 | 7.2:-32990156 | MS.gene42874:CDS |
| AGATAAGGAAATGTATGAGA+AGG | 0.595028 | 7.2:-32989883 | MS.gene42874:CDS |
| CCATAATGATTGTAACACAC+AGG | 0.599317 | 7.2:+32989915 | None:intergenic |
| GTTTGGTGCTGAAAATGTTG+TGG | 0.600996 | 7.2:-32990009 | MS.gene42874:CDS |
| AGGGTTCAAGTTCTTGAGAG+AGG | 0.610104 | 7.2:-32989819 | MS.gene42874:CDS |
| AAGTGGGAGATAGTAGTTGG+AGG | 0.610219 | 7.2:-32988096 | MS.gene42874:CDS |
| CATACAAATAGAAGGAGTTG+AGG | 0.610399 | 7.2:-32988812 | MS.gene42874:intron |
| TACAACATGCTGAAATACCA+TGG | 0.625322 | 7.2:+32989272 | None:intergenic |
| AGAGTGGTGCAACAATCAAG+TGG | 0.626220 | 7.2:-32988113 | MS.gene42874:CDS |
| GGACCATTCTGAAAATCACT+AGG | 0.626931 | 7.2:+32988883 | None:intergenic |
| TCTGAGTTCACTGTTAAAGG+AGG | 0.633144 | 7.2:-32988847 | MS.gene42874:CDS |
| AAGTTTGTGATCTCTAAGGA+AGG | 0.634705 | 7.2:-32989209 | MS.gene42874:CDS |
| TCTGGTGAAATCAACAACAA+TGG | 0.648679 | 7.2:-32990167 | MS.gene42874:CDS |
| TGGGGTGTTAGTTTGATCAA+AGG | 0.650022 | 7.2:-32990137 | MS.gene42874:CDS |
| GAGTGGTGCAACAATCAAGT+GGG | 0.657297 | 7.2:-32988112 | MS.gene42874:CDS |
| TCAACAACAATGGTTCCATG+TGG | 0.658931 | 7.2:-32990157 | MS.gene42874:CDS |
| CATAATGATTGTAACACACA+GGG | 0.659937 | 7.2:+32989916 | None:intergenic |
| TGGTGTGCTTAGGATTGACA+TGG | 0.671206 | 7.2:+32990367 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATGTTATACTAAATAT+AGG | + | chr7.2:32988901-32988920 | None:intergenic | 15.0% |
| !!! | AAATTTAACTACATTTTACA+CGG | - | chr7.2:32989531-32989550 | MS.gene42874:intron | 15.0% |
| !!! | TTTTTTTGTTCAGATTTATA+AGG | - | chr7.2:32989284-32989303 | MS.gene42874:CDS | 15.0% |
| !! | AAGTATGAGTATATCAAAAT+TGG | + | chr7.2:32989819-32989838 | None:intergenic | 20.0% |
| !! | ACAATAATAGAAAAATTGTG+GGG | + | chr7.2:32989241-32989260 | None:intergenic | 20.0% |
| !! | CACAATAATAGAAAAATTGT+GGG | + | chr7.2:32989242-32989261 | None:intergenic | 20.0% |
| !! | TCTTATTAGAGACTATATAA+TGG | - | chr7.2:32989465-32989484 | MS.gene42874:intron | 20.0% |
| !! | TTTATTTGAAGAAAGTAACA+TGG | - | chr7.2:32988629-32988648 | MS.gene42874:intron | 20.0% |
| !!! | AATTTTGATATACTCATACT+TGG | - | chr7.2:32989818-32989837 | MS.gene42874:CDS | 20.0% |
| !!! | AGATGTAATTTTAGAAAATC+TGG | - | chr7.2:32989103-32989122 | MS.gene42874:intron | 20.0% |
| !!! | ATTTTGATATACTCATACTT+GGG | - | chr7.2:32989819-32989838 | MS.gene42874:CDS | 20.0% |
| !!! | ATTTTGTTTGATATATAGAC+AGG | + | chr7.2:32989208-32989227 | None:intergenic | 20.0% |
| !!! | GAATTTTCTCAAATTGTTAA+CGG | - | chr7.2:32988813-32988832 | MS.gene42874:CDS | 20.0% |
| !!! | TTATTTTGGTGTTGTTTATT+TGG | - | chr7.2:32988661-32988680 | MS.gene42874:intron | 20.0% |
| ! | AAAGTGAACATACAAATAGA+AGG | - | chr7.2:32989409-32989428 | MS.gene42874:intron | 25.0% |
| ! | AAATCTTATACTAAGTGTCA+CGG | + | chr7.2:32989879-32989898 | None:intergenic | 25.0% |
| ! | AATAGATATATCAAGTGTCA+CGG | - | chr7.2:32989583-32989602 | MS.gene42874:intron | 25.0% |
| ! | AATATTCCTATTCAATATGG+TGG | - | chr7.2:32989313-32989332 | MS.gene42874:intron | 25.0% |
| ! | ACAAAAACAATGTCATATCA+AGG | + | chr7.2:32988590-32988609 | None:intergenic | 25.0% |
| ! | GACTATATAATGGTTACTTA+TGG | - | chr7.2:32989475-32989494 | MS.gene42874:intron | 25.0% |
| ! | GAGAATATTCCTATTCAATA+TGG | - | chr7.2:32989310-32989329 | MS.gene42874:intron | 25.0% |
| ! | GCACAATAATAGAAAAATTG+TGG | + | chr7.2:32989243-32989262 | None:intergenic | 25.0% |
| ! | GTAGTAAATTGCTTTAACAT+TGG | + | chr7.2:32990052-32990071 | None:intergenic | 25.0% |
| ! | GTAGTTCATGAAATGAAATT+CGG | + | chr7.2:32989624-32989643 | None:intergenic | 25.0% |
| ! | TAATGGTTACTTATGGTTTA+AGG | - | chr7.2:32989482-32989501 | MS.gene42874:intron | 25.0% |
| ! | TATTGAATAGGAATATTCTC+AGG | + | chr7.2:32989310-32989329 | None:intergenic | 25.0% |
| !! | CATAAACATCATTGATGTTT+TGG | + | chr7.2:32989076-32989095 | None:intergenic | 25.0% |
| !! | TTTTGATATACTCATACTTG+GGG | - | chr7.2:32989820-32989839 | MS.gene42874:CDS | 25.0% |
| !!! | ACGTTTGATTTTTGTGTTAA+TGG | - | chr7.2:32989982-32990001 | MS.gene42874:CDS | 25.0% |
| !!! | GTGTATTGTTGTTGTATTTT+CGG | + | chr7.2:32990360-32990379 | None:intergenic | 25.0% |
| AAATGTTGTGGATGAAGATT+TGG | - | chr7.2:32988232-32988251 | MS.gene42874:intron | 30.0% | |
| AACCATAGTCACAACATTAA+TGG | - | chr7.2:32987929-32987948 | MS.gene42874:CDS | 30.0% | |
| AATGTTGTGGATGAAGATTT+GGG | - | chr7.2:32988233-32988252 | MS.gene42874:intron | 30.0% | |
| ACACTTAGTATAAGATTTCC+AGG | - | chr7.2:32989881-32989900 | MS.gene42874:CDS | 30.0% | |
| AGATAAGGAAATGTATGAGA+AGG | - | chr7.2:32988346-32988365 | MS.gene42874:intron | 30.0% | |
| AGCAAAAGTAAAGCCTAAAA+AGG | + | chr7.2:32989177-32989196 | None:intergenic | 30.0% | |
| CATAATGATTGTAACACACA+GGG | + | chr7.2:32988316-32988335 | None:intergenic | 30.0% | |
| CTATAGAAGTTGAAAAAGCA+AGG | - | chr7.2:32990209-32990228 | MS.gene42874:CDS | 30.0% | |
| GTAATTATATGTGTGAGTGT+CGG | + | chr7.2:32988782-32988801 | None:intergenic | 30.0% | |
| GTTTGTAACGTTCAAATTTG+TGG | - | chr7.2:32989715-32989734 | MS.gene42874:CDS | 30.0% | |
| TCAAGATAACTATCCTGAAA+TGG | - | chr7.2:32988550-32988569 | MS.gene42874:intron | 30.0% | |
| TTATGGTGTGTTCAAAGATA+AGG | - | chr7.2:32988331-32988350 | MS.gene42874:intron | 30.0% | |
| TTCCATTAATGTTGTGACTA+TGG | + | chr7.2:32987934-32987953 | None:intergenic | 30.0% | |
| ! | AAGCTTTTACAGTTTAAACC+TGG | - | chr7.2:32988437-32988456 | MS.gene42874:intron | 30.0% |
| ! | ACAGTTGAAACATCTGAAAT+CGG | - | chr7.2:32989691-32989710 | MS.gene42874:CDS | 30.0% |
| ! | GAAATGTATGAGAAGGTTTT+TGG | - | chr7.2:32988353-32988372 | MS.gene42874:intron | 30.0% |
| ! | GATTCAAGTTACTGATCTTA+AGG | - | chr7.2:32988475-32988494 | MS.gene42874:intron | 30.0% |
| ! | TTAGTTCTTTGAGTCAGAAA+TGG | + | chr7.2:32988996-32989015 | None:intergenic | 30.0% |
| ! | TTTCTTGGAGTTTCTAGAAA+TGG | + | chr7.2:32987885-32987904 | None:intergenic | 30.0% |
| ! | TTTGAGGTTGGAAATGAAAT+AGG | + | chr7.2:32987994-32988013 | None:intergenic | 30.0% |
| ! | TTTGTGACTGTTTCCTTTTT+AGG | - | chr7.2:32989161-32989180 | MS.gene42874:intron | 30.0% |
| ! | TTTTACAGTTTAAACCTGGT+GGG | - | chr7.2:32988441-32988460 | MS.gene42874:intron | 30.0% |
| !! | AAAAGCATTGAAACAGTTGA+AGG | - | chr7.2:32988025-32988044 | MS.gene42874:CDS | 30.0% |
| !! | AGTTGAAGAAGTTTTTGAGA+TGG | - | chr7.2:32988387-32988406 | MS.gene42874:intron | 30.0% |
| !! | CGTGATTAGTCACAATTTTT+AGG | - | chr7.2:32989653-32989672 | MS.gene42874:intron | 30.0% |
| !! | TCACAATTTGTTGATTAGAG+TGG | - | chr7.2:32990100-32990119 | MS.gene42874:CDS | 30.0% |
| !!! | CATGGCTTGTTTTGTTATTT+TGG | - | chr7.2:32988647-32988666 | MS.gene42874:intron | 30.0% |
| !!! | GTTCTTTTGTTTGGTTTTGA+GGG | + | chr7.2:32987912-32987931 | None:intergenic | 30.0% |
| !!! | TTTCAATGCTTTTTTCTCAG+AGG | + | chr7.2:32988018-32988037 | None:intergenic | 30.0% |
| AACTCGCAAACAAATATGCT+CGG | - | chr7.2:32989911-32989930 | MS.gene42874:CDS | 35.0% | |
| AAGGAAAAGCTCTTAACTTC+TGG | - | chr7.2:32988044-32988063 | MS.gene42874:CDS | 35.0% | |
| AGAAGTTGAAAAAGCAAGGA+AGG | - | chr7.2:32990213-32990232 | MS.gene42874:CDS | 35.0% | |
| AGGCTTAATTGCATATCAGA+TGG | + | chr7.2:32990382-32990401 | None:intergenic | 35.0% | |
| ATATGCCTAAGAGTGAGTTA+AGG | - | chr7.2:32988498-32988517 | MS.gene42874:intron | 35.0% | |
| ATCAAAAGAAGCAGGCATTA+TGG | - | chr7.2:32990273-32990292 | MS.gene42874:CDS | 35.0% | |
| ATGAAATGAAATTCGGTAGC+TGG | + | chr7.2:32989617-32989636 | None:intergenic | 35.0% | |
| CATACAAATAGAAGGAGTTG+AGG | - | chr7.2:32989417-32989436 | MS.gene42874:intron | 35.0% | |
| CCATAATGATTGTAACACAC+AGG | + | chr7.2:32988317-32988336 | None:intergenic | 35.0% | |
| CCTGTGTGTTACAATCATTA+TGG | - | chr7.2:32988314-32988333 | MS.gene42874:intron | 35.0% | |
| CTCAATCCACCATATTGAAT+AGG | + | chr7.2:32989322-32989341 | None:intergenic | 35.0% | |
| TACAACATGCTGAAATACCA+TGG | + | chr7.2:32988960-32988979 | None:intergenic | 35.0% | |
| TATGCCTAAGAGTGAGTTAA+GGG | - | chr7.2:32988499-32988518 | MS.gene42874:intron | 35.0% | |
| TCATTCACATCAAAAGAAGC+AGG | - | chr7.2:32990265-32990284 | MS.gene42874:CDS | 35.0% | |
| TCTCAAATTGTTAACGGTGT+CGG | - | chr7.2:32988819-32988838 | MS.gene42874:CDS | 35.0% | |
| TCTGGTGAAATCAACAACAA+TGG | - | chr7.2:32988062-32988081 | MS.gene42874:CDS | 35.0% | |
| TTACACCCAATATTGAAGCA+CGG | - | chr7.2:32988710-32988729 | MS.gene42874:intron | 35.0% | |
| TTTACAGTTTAAACCTGGTG+GGG | - | chr7.2:32988442-32988461 | MS.gene42874:intron | 35.0% | |
| ! | AAGTTTGTGATCTCTAAGGA+AGG | - | chr7.2:32989020-32989039 | MS.gene42874:intron | 35.0% |
| ! | AGATTTTCATCAATGTGCCA+TGG | - | chr7.2:32988940-32988959 | MS.gene42874:intron | 35.0% |
| ! | CACTAATGAAGTGTTTGCTT+TGG | - | chr7.2:32989558-32989577 | MS.gene42874:intron | 35.0% |
| ! | CTTTTACAGTTTAAACCTGG+TGG | - | chr7.2:32988440-32988459 | MS.gene42874:intron | 35.0% |
| ! | GTGACTATGGTTCTTTTGTT+TGG | + | chr7.2:32987921-32987940 | None:intergenic | 35.0% |
| ! | TTTCTAGAAATGGTGTGCTT+AGG | + | chr7.2:32987875-32987894 | None:intergenic | 35.0% |
| !! | AGGCTTTACTTTTGCTGAAT+TGG | - | chr7.2:32989181-32989200 | MS.gene42874:intron | 35.0% |
| !!! | AGGTTTTGAGTTCGAACTTT+TGG | - | chr7.2:32989502-32989521 | MS.gene42874:intron | 35.0% |
| !!! | CTTTTTTCTCAGAGGATTTG+AGG | + | chr7.2:32988010-32988029 | None:intergenic | 35.0% |
| !!! | GAAGAAGTTTTTGAGATGGA+GGG | - | chr7.2:32988391-32988410 | MS.gene42874:intron | 35.0% |
| !!! | GGTTCTTTTGTTTGGTTTTG+AGG | + | chr7.2:32987913-32987932 | None:intergenic | 35.0% |
| !!! | GTGTTGTTGCTTTTACTCAT+GGG | - | chr7.2:32988273-32988292 | MS.gene42874:intron | 35.0% |
| !!! | TGAAGAAGTTTTTGAGATGG+AGG | - | chr7.2:32988390-32988409 | MS.gene42874:intron | 35.0% |
| AACAACAATGGTTCCATGTG+GGG | - | chr7.2:32988074-32988093 | MS.gene42874:CDS | 40.0% | |
| ACAACCCTTAACTCACTCTT+AGG | + | chr7.2:32988506-32988525 | None:intergenic | 40.0% | |
| AGTGTCCGTGCTTCAATATT+GGG | + | chr7.2:32988718-32988737 | None:intergenic | 40.0% | |
| ATCAAGTGGGAGATAGTAGT+TGG | - | chr7.2:32990130-32990149 | MS.gene42874:CDS | 40.0% | |
| CAACAACAATGGTTCCATGT+GGG | - | chr7.2:32988073-32988092 | MS.gene42874:CDS | 40.0% | |
| CTTTCTTGGAGGAAAGAGTT+TGG | - | chr7.2:32988203-32988222 | MS.gene42874:intron | 40.0% | |
| GAGCAAGTTTGTGATCTCTA+AGG | - | chr7.2:32989016-32989035 | MS.gene42874:intron | 40.0% | |
| GCTTCTGAGTTCACTGTTAA+AGG | - | chr7.2:32989379-32989398 | MS.gene42874:intron | 40.0% | |
| TAAAGTTGACTACCTAGCGA+CGG | + | chr7.2:32989855-32989874 | None:intergenic | 40.0% | |
| TCAACAACAATGGTTCCATG+TGG | - | chr7.2:32988072-32988091 | MS.gene42874:CDS | 40.0% | |
| TCTGAGTTCACTGTTAAAGG+AGG | - | chr7.2:32989382-32989401 | MS.gene42874:intron | 40.0% | |
| TTAACAGTGAACTCAGAAGC+TGG | + | chr7.2:32989379-32989398 | None:intergenic | 40.0% | |
| TTGGGATTCAAAGAGCTTGA+AGG | - | chr7.2:32988251-32988270 | MS.gene42874:intron | 40.0% | |
| ! | CGACCTAGTGATTTTCAGAA+TGG | - | chr7.2:32989343-32989362 | MS.gene42874:intron | 40.0% |
| ! | CTCTGCTTCTAGGAAGAAAA+AGG | - | chr7.2:32990312-32990331 | MS.gene42874:CDS | 40.0% |
| ! | GGACCATTCTGAAAATCACT+AGG | + | chr7.2:32989349-32989368 | None:intergenic | 40.0% |
| ! | TGCTTGTGAAGTGTCTTTCT+TGG | - | chr7.2:32988189-32988208 | MS.gene42874:intron | 40.0% |
| ! | TGGGGTGTTAGTTTGATCAA+AGG | - | chr7.2:32988092-32988111 | MS.gene42874:CDS | 40.0% |
| ! | TTGTGAAGTGTCTTTCTTGG+AGG | - | chr7.2:32988192-32988211 | MS.gene42874:intron | 40.0% |
| ! | TTTCTCAGAGGATTTGAGGT+TGG | + | chr7.2:32988006-32988025 | None:intergenic | 40.0% |
| !! | GTTTGGTGCTGAAAATGTTG+TGG | - | chr7.2:32988220-32988239 | MS.gene42874:intron | 40.0% |
| !!! | GGTGTTGTTGCTTTTACTCA+TGG | - | chr7.2:32988272-32988291 | MS.gene42874:intron | 40.0% |
| !!! | GGTTTTGAGGGAGTTTTTCT+TGG | + | chr7.2:32987900-32987919 | None:intergenic | 40.0% |
| !!! | TGAACTCAGAAGCTGGTTTT+GGG | + | chr7.2:32989372-32989391 | None:intergenic | 40.0% |
| AAGTGGGAGATAGTAGTTGG+AGG | - | chr7.2:32990133-32990152 | MS.gene42874:CDS | 45.0% | |
| ACCTTACGAGCAACCATTTC+AGG | + | chr7.2:32988566-32988585 | None:intergenic | 45.0% | |
| AGAGTGGTGCAACAATCAAG+TGG | - | chr7.2:32990116-32990135 | MS.gene42874:CDS | 45.0% | |
| ATCAAAGAATTCACCCCACC+AGG | + | chr7.2:32988458-32988477 | None:intergenic | 45.0% | |
| CAGTCGATAACTCTGCTTCT+AGG | - | chr7.2:32990302-32990321 | MS.gene42874:CDS | 45.0% | |
| GAGTGGTGCAACAATCAAGT+GGG | - | chr7.2:32990117-32990136 | MS.gene42874:CDS | 45.0% | |
| GAGTGTCCGTGCTTCAATAT+TGG | + | chr7.2:32988719-32988738 | None:intergenic | 45.0% | |
| GATCAAACTAACACCCCACA+TGG | + | chr7.2:32988090-32988109 | None:intergenic | 45.0% | |
| GGTGTGTTAGTATCTGTGTC+CGG | - | chr7.2:32988840-32988859 | MS.gene42874:CDS | 45.0% | |
| GTTTGCGAGTTTCTTGATCC+TGG | + | chr7.2:32989902-32989921 | None:intergenic | 45.0% | |
| TCCTGAAATGGTTGCTCGTA+AGG | - | chr7.2:32988562-32988581 | MS.gene42874:intron | 45.0% | |
| TGGTGTGCTTAGGATTGACA+TGG | + | chr7.2:32987865-32987884 | None:intergenic | 45.0% | |
| TGTCTGTATCCGTGCTTCAT+AGG | - | chr7.2:32988868-32988887 | MS.gene42874:CDS | 45.0% | |
| ! | AGGGTTCAAGTTCTTGAGAG+AGG | - | chr7.2:32988410-32988429 | MS.gene42874:intron | 45.0% |
| ! | GGGTTCAAGTTCTTGAGAGA+GGG | - | chr7.2:32988411-32988430 | MS.gene42874:intron | 45.0% |
| ! | GTGTAGCTAGCTTCTGCATT+CGG | + | chr7.2:32990190-32990209 | None:intergenic | 45.0% |
| !! | GTGAACTCAGAAGCTGGTTT+TGG | + | chr7.2:32989373-32989392 | None:intergenic | 45.0% |
| !!! | AACTCAGAAGCTGGTTTTGG+GGG | + | chr7.2:32989370-32989389 | None:intergenic | 45.0% |
| !!! | GAACTCAGAAGCTGGTTTTG+GGG | + | chr7.2:32989371-32989390 | None:intergenic | 45.0% |
| AGTAGTTGGAGGCTGGGATT+TGG | - | chr7.2:32990144-32990163 | MS.gene42874:CDS | 50.0% | |
| ATACGACATGTAGCCGACAC+TGG | + | chr7.2:32988759-32988778 | None:intergenic | 50.0% | |
| ATGTAGCCGACACTGGAACA+CGG | + | chr7.2:32988752-32988771 | None:intergenic | 50.0% | |
| ATTGAAGCACGGACACTCCT+CGG | - | chr7.2:32988721-32988740 | MS.gene42874:intron | 50.0% | |
| CGCAAACAAATATGCTCGGC+TGG | - | chr7.2:32989915-32989934 | MS.gene42874:CDS | 50.0% | |
| GGAGATAGTAGTTGGAGGCT+GGG | - | chr7.2:32990138-32990157 | MS.gene42874:CDS | 50.0% | |
| GGTGCAAGTCCTATGAAGCA+CGG | + | chr7.2:32988880-32988899 | None:intergenic | 50.0% | |
| CACGGATACAGACACGACAC+CGG | + | chr7.2:32988862-32988881 | None:intergenic | 55.0% | |
| GATCAGCCGTGTTCCAGTGT+CGG | - | chr7.2:32988743-32988762 | MS.gene42874:intron | 55.0% | |
| GGGAGATAGTAGTTGGAGGC+TGG | - | chr7.2:32990137-32990156 | MS.gene42874:CDS | 55.0% | |
| TTGACTACCTAGCGACGGAG+TGG | + | chr7.2:32989850-32989869 | None:intergenic | 55.0% | |
| ACTGGAACACGGCTGATCCG+AGG | + | chr7.2:32988741-32988760 | None:intergenic | 60.0% | |
| GGGTCATCCACTCCGTCGCT+AGG | - | chr7.2:32989840-32989859 | MS.gene42874:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 32987837 | 32990414 | 32987837 | ID=MS.gene42874 |
| chr7.2 | mRNA | 32987837 | 32990414 | 32987837 | ID=MS.gene42874.t1;Parent=MS.gene42874 |
| chr7.2 | exon | 32989668 | 32990414 | 32989668 | ID=MS.gene42874.t1.exon1;Parent=MS.gene42874.t1 |
| chr7.2 | CDS | 32989668 | 32990414 | 32989668 | ID=cds.MS.gene42874.t1;Parent=MS.gene42874.t1 |
| chr7.2 | exon | 32989185 | 32989309 | 32989185 | ID=MS.gene42874.t1.exon2;Parent=MS.gene42874.t1 |
| chr7.2 | CDS | 32989185 | 32989309 | 32989185 | ID=cds.MS.gene42874.t1;Parent=MS.gene42874.t1 |
| chr7.2 | exon | 32988813 | 32988954 | 32988813 | ID=MS.gene42874.t1.exon3;Parent=MS.gene42874.t1 |
| chr7.2 | CDS | 32988813 | 32988954 | 32988813 | ID=cds.MS.gene42874.t1;Parent=MS.gene42874.t1 |
| chr7.2 | exon | 32987837 | 32988133 | 32987837 | ID=MS.gene42874.t1.exon4;Parent=MS.gene42874.t1 |
| chr7.2 | CDS | 32987837 | 32988133 | 32987837 | ID=cds.MS.gene42874.t1;Parent=MS.gene42874.t1 |
| Gene Sequence |
| Protein sequence |
