Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43416.t1 | XP_003610594.2 | 79.2 | 313 | 25 | 4 | 55 | 327 | 258 | 570 | 5.60E-113 | 417.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43416.t1 | Q8GYX3 | 55.3 | 273 | 97 | 6 | 54 | 315 | 237 | 495 | 1.3e-57 | 224.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43416.t1 | G7JMW8 | 79.2 | 313 | 25 | 4 | 55 | 327 | 250 | 562 | 4.0e-113 | 417.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052190 | MS.gene43416 | 0.80104 | 1.09E-48 | -1.69E-46 |
| MS.gene052333 | MS.gene43416 | 0.810226 | 1.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43416.t1 | MTR_4g133890 | 79.233 | 313 | 25 | 4 | 55 | 327 | 250 | 562 | 1.51e-161 | 463 |
| MS.gene43416.t1 | MTR_4g133890 | 78.846 | 312 | 26 | 4 | 55 | 326 | 258 | 569 | 8.90e-160 | 459 |
| MS.gene43416.t1 | MTR_2g026590 | 57.944 | 321 | 75 | 8 | 55 | 329 | 245 | 551 | 2.40e-92 | 285 |
| MS.gene43416.t1 | MTR_8g021120 | 47.797 | 295 | 118 | 11 | 45 | 308 | 278 | 567 | 5.06e-57 | 194 |
| MS.gene43416.t1 | MTR_8g105350 | 46.309 | 298 | 120 | 10 | 45 | 308 | 282 | 573 | 5.71e-56 | 192 |
| MS.gene43416.t1 | MTR_1g032520 | 44.257 | 296 | 129 | 8 | 45 | 308 | 277 | 568 | 3.11e-53 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43416.t1 | AT4G17220 | 55.725 | 262 | 91 | 6 | 54 | 304 | 237 | 484 | 1.13e-79 | 252 |
| MS.gene43416.t1 | AT1G24764 | 45.033 | 302 | 120 | 10 | 45 | 308 | 146 | 439 | 1.77e-57 | 193 |
| MS.gene43416.t1 | AT1G24764 | 45.033 | 302 | 120 | 10 | 45 | 308 | 299 | 592 | 3.47e-56 | 193 |
| MS.gene43416.t1 | AT1G24764 | 45.033 | 302 | 120 | 10 | 45 | 308 | 358 | 651 | 7.60e-56 | 193 |
| MS.gene43416.t1 | AT1G68060 | 43.087 | 311 | 139 | 9 | 45 | 323 | 291 | 595 | 1.60e-55 | 191 |
| MS.gene43416.t1 | AT2G01750 | 42.415 | 323 | 128 | 10 | 45 | 324 | 298 | 605 | 3.72e-55 | 190 |
| MS.gene43416.t1 | AT2G01750 | 42.415 | 323 | 128 | 10 | 45 | 324 | 298 | 605 | 4.50e-55 | 190 |
| MS.gene43416.t1 | AT1G14840 | 42.809 | 299 | 127 | 11 | 45 | 308 | 274 | 563 | 3.84e-54 | 187 |
| MS.gene43416.t1 | AT1G14840 | 38.796 | 299 | 124 | 12 | 45 | 308 | 274 | 548 | 2.00e-39 | 147 |
Find 57 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTGCAAATTACTGTCTT+TGG | 0.222434 | 8.4:+983431 | None:intergenic |
| CCACTATCAGCAACTTTACT+TGG | 0.264053 | 8.4:+983660 | None:intergenic |
| AGCTAAAGATGAAGAAATTA+TGG | 0.313202 | 8.4:-983412 | MS.gene43416:intron |
| ATAAGTTCCCCAACAGAAAA+TGG | 0.325320 | 8.4:-983852 | MS.gene43416:CDS |
| TTCACCATTTGCAATTCTAT+TGG | 0.325874 | 8.4:+984674 | None:intergenic |
| AAGTCTGGCTTCATGAAGTA+TGG | 0.330952 | 8.4:+985070 | None:intergenic |
| AGTCATTTGGTTTCTTGCTT+TGG | 0.339262 | 8.4:+983535 | None:intergenic |
| TGCAGTGACGATTTGGTGTC+AGG | 0.351949 | 8.4:-983510 | MS.gene43416:CDS |
| TCTTCTAGCCATTGCTTGAC+AGG | 0.383618 | 8.4:+984615 | None:intergenic |
| CCGCTCTACTTCCATGGACT+TGG | 0.386322 | 8.4:+982972 | None:intergenic |
| CTTCACTTTCAGCATTGAAC+TGG | 0.389403 | 8.4:+983592 | None:intergenic |
| TTATGGTGATAAAACAAGTC+TGG | 0.401974 | 8.4:+985055 | None:intergenic |
| TAATAAGTTCAGATGATAAC+AGG | 0.405133 | 8.4:-982900 | MS.gene43416:CDS |
| CAGAAAACATGTTGAAGAAA+AGG | 0.410590 | 8.4:-983685 | MS.gene43416:CDS |
| GCTAGCAAGGGTAAAAGTTT+CGG | 0.430627 | 8.4:-984697 | MS.gene43416:CDS |
| TCGTCACTGCACGAGTCATT+TGG | 0.432134 | 8.4:+983522 | None:intergenic |
| TGAAAAGGAAAATGAGATAC+AGG | 0.451771 | 8.4:-983637 | MS.gene43416:CDS |
| AGTTGCTGATAGTGGTGAAA+AGG | 0.454137 | 8.4:-983652 | MS.gene43416:CDS |
| ACATAGGAACTACCTTTAGC+TGG | 0.454697 | 8.4:+985329 | None:intergenic |
| TTTCTTCCGCTCTACTTCCA+TGG | 0.458047 | 8.4:+982966 | None:intergenic |
| TGACTCGTGCAGTGACGATT+TGG | 0.459803 | 8.4:-983517 | MS.gene43416:CDS |
| CTTCCAATCGCAGAAGCTCT+TGG | 0.464587 | 8.4:+983801 | None:intergenic |
| CTTCATCTGTGATTCTGCCT+TGG | 0.465848 | 8.4:+984033 | None:intergenic |
| GCTTCATGAAGTATGGAATC+TGG | 0.469231 | 8.4:+985077 | None:intergenic |
| CATAAAATAAACTTCTTGAA+AGG | 0.474874 | 8.4:-985037 | MS.gene43416:CDS |
| ATAAAATAAACTTCTTGAAA+GGG | 0.478834 | 8.4:-985036 | MS.gene43416:CDS |
| CAACCAAGAGCTTCTGCGAT+TGG | 0.480093 | 8.4:-983804 | MS.gene43416:CDS |
| CACTAGAGAGGGAGCTAGCA+AGG | 0.481581 | 8.4:-984710 | MS.gene43416:CDS |
| CCAAGTAAAGTTGCTGATAG+TGG | 0.491571 | 8.4:-983660 | MS.gene43416:CDS |
| AGGGAGAAAGTTGCAAGAGC+AGG | 0.503311 | 8.4:-985017 | MS.gene43416:CDS |
| AGATGCAGCTGCTAGAGAAA+AGG | 0.532223 | 8.4:-982935 | MS.gene43416:CDS |
| ATACCAGTGTATCCAGCTAA+AGG | 0.538288 | 8.4:-985341 | MS.gene43416:intron |
| GAAACAAAGACTCCTCCAAA+AGG | 0.543913 | 8.4:-982870 | MS.gene43416:intron |
| TCGGCCAATAGAATTGCAAA+TGG | 0.544219 | 8.4:-984678 | MS.gene43416:CDS |
| GGCAATGTTGTACTCAATGA+TGG | 0.548190 | 8.4:+985102 | None:intergenic |
| TGATGCACTGACCAAGTCCA+TGG | 0.550345 | 8.4:-982983 | MS.gene43416:CDS |
| CAAGGCAGAATCACAGATGA+AGG | 0.551311 | 8.4:-984032 | MS.gene43416:intron |
| AAAGAGAGGTCATTAAATTG+AGG | 0.563049 | 8.4:-983467 | MS.gene43416:CDS |
| AGAAGAGAGAAGGATTATGC+AGG | 0.567503 | 8.4:-984598 | MS.gene43416:intron |
| TGCAGCTGCTAGAGAAAAGG+AGG | 0.568762 | 8.4:-982932 | MS.gene43416:CDS |
| CTACCTTTAGCTGGATACAC+TGG | 0.570753 | 8.4:+985338 | None:intergenic |
| AGCAATGGCTAGAAGAGAGA+AGG | 0.577331 | 8.4:-984608 | MS.gene43416:CDS |
| AAATGTAGACAGAGATGCAA+AGG | 0.598221 | 8.4:-984090 | MS.gene43416:intron |
| AGGTCATGCCTGTCAAGCAA+TGG | 0.604618 | 8.4:-984623 | MS.gene43416:CDS |
| ATGAGAAAAGGACACTAGAG+AGG | 0.607096 | 8.4:-984722 | MS.gene43416:CDS |
| GTATGATAGGCTGCAAAGAG+AGG | 0.608475 | 8.4:-983481 | MS.gene43416:CDS |
| CATGAAGTATGGAATCTGGT+TGG | 0.612040 | 8.4:+985081 | None:intergenic |
| ACTAGAGAGGGAGCTAGCAA+GGG | 0.615439 | 8.4:-984709 | MS.gene43416:CDS |
| TGGTGAAGCTAATGAGTGGA+AGG | 0.633476 | 8.4:-984658 | MS.gene43416:CDS |
| TATATCAGAGAGAACAGCCA+AGG | 0.654453 | 8.4:-984050 | MS.gene43416:CDS |
| TGAGAAAAGGACACTAGAGA+GGG | 0.660251 | 8.4:-984721 | MS.gene43416:CDS |
| AAAGGAAAATGAGATACAGG+TGG | 0.667770 | 8.4:-983634 | MS.gene43416:CDS |
| AGAAGCTCTTGGTTGTGATG+TGG | 0.668929 | 8.4:+983812 | None:intergenic |
| CCAAGTCCATGGAAGTAGAG+CGG | 0.682402 | 8.4:-982972 | MS.gene43416:CDS |
| GTGGAAGGATGAAAATGACA+AGG | 0.684047 | 8.4:-984643 | MS.gene43416:CDS |
| CAAATGGTGAAGCTAATGAG+TGG | 0.695992 | 8.4:-984662 | MS.gene43416:CDS |
| AGTTCCCCAACAGAAAATGG+TGG | 0.700541 | 8.4:-983849 | MS.gene43416:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATTGTAGTATTTA+AGG | + | chr8.4:983625-983644 | None:intergenic | 10.0% |
| !! | AAAAAGATACAAAATAATAG+AGG | + | chr8.4:982834-982853 | None:intergenic | 15.0% |
| !! | ATAAAATAAACTTCTTGAAA+GGG | - | chr8.4:983098-983117 | MS.gene43416:intron | 15.0% |
| !! | ATATACTGAAATAAATCTTA+AGG | - | chr8.4:983685-983704 | MS.gene43416:CDS | 15.0% |
| !! | GAAGTATATTTCATATTAAT+AGG | + | chr8.4:984427-984446 | None:intergenic | 15.0% |
| !! | TATACTGAAATAAATCTTAA+GGG | - | chr8.4:983686-983705 | MS.gene43416:intron | 15.0% |
| !!! | ATTTTATTTTGTTACTTATG+AGG | - | chr8.4:983636-983655 | MS.gene43416:CDS | 15.0% |
| !!! | CATCTATTTCTTTTTTAAAA+TGG | + | chr8.4:984994-985013 | None:intergenic | 15.0% |
| !!! | TAATTTTCGTAAATTATTAC+CGG | - | chr8.4:984886-984905 | MS.gene43416:intron | 15.0% |
| !! | AATGTTTGATATACATTAGT+AGG | - | chr8.4:983266-983285 | MS.gene43416:intron | 20.0% |
| !! | CATAAAATAAACTTCTTGAA+AGG | - | chr8.4:983097-983116 | MS.gene43416:intron | 20.0% |
| !! | GAATAGTAATATACATTAGT+AGG | - | chr8.4:983160-983179 | MS.gene43416:intron | 20.0% |
| !! | GGATTATCATAATGTATAAT+TGG | - | chr8.4:983138-983157 | MS.gene43416:intron | 20.0% |
| !! | GTTTGTAGAAATTTCATTTA+AGG | + | chr8.4:984010-984029 | None:intergenic | 20.0% |
| !!! | ACTACAATTTTCCATATTTA+AGG | - | chr8.4:983739-983758 | MS.gene43416:intron | 20.0% |
| !!! | AGCAATTTTATAACATTGTT+AGG | + | chr8.4:985342-985361 | None:intergenic | 20.0% |
| !!! | ATATTGTTATTGTAGTTTTC+AGG | + | chr8.4:983669-983688 | None:intergenic | 20.0% |
| !!! | CTTTCAAGAAGTTTATTTTA+TGG | + | chr8.4:983099-983118 | None:intergenic | 20.0% |
| !!! | GTTGTTTTTATAAGTTATCT+TGG | - | chr8.4:983857-983876 | MS.gene43416:CDS | 20.0% |
| !!! | TGTTTTCTTTTCTTTTATTC+CGG | - | chr8.4:983007-983026 | MS.gene43416:intron | 20.0% |
| ! | AAAATAATAGAGGTTCACAT+AGG | + | chr8.4:982824-982843 | None:intergenic | 25.0% |
| ! | AATGTTATAAAATTGCTGCA+GGG | - | chr8.4:985345-985364 | MS.gene43416:CDS | 25.0% |
| ! | AGCTAAAGATGAAGAAATTA+TGG | - | chr8.4:984722-984741 | MS.gene43416:CDS | 25.0% |
| ! | ATATTTGTCTGTTGAAACAA+AGG | + | chr8.4:984360-984379 | None:intergenic | 25.0% |
| ! | ATGTAGTTCAGTATGTTATA+TGG | + | chr8.4:985102-985121 | None:intergenic | 25.0% |
| ! | ATGTCATCTATATAAAGTGT+CGG | + | chr8.4:984790-984809 | None:intergenic | 25.0% |
| ! | TAATAAGTTCAGATGATAAC+AGG | - | chr8.4:985234-985253 | MS.gene43416:intron | 25.0% |
| ! | TATTTGTCTGTTGAAACAAA+GGG | + | chr8.4:984359-984378 | None:intergenic | 25.0% |
| !! | AATTGATTTAGATGCTTACA+CGG | + | chr8.4:984152-984171 | None:intergenic | 25.0% |
| !! | ATAAACTTCAAAGGTTTTCA+TGG | + | chr8.4:983585-983604 | None:intergenic | 25.0% |
| !! | GGTTTTGCATATAAATTTTC+AGG | - | chr8.4:983389-983408 | MS.gene43416:intron | 25.0% |
| !! | TGATATATTGACAGTTTGTT+TGG | - | chr8.4:983344-983363 | MS.gene43416:intron | 25.0% |
| !!! | TAAATTTTCAGGATGAGAAA+AGG | - | chr8.4:983400-983419 | MS.gene43416:intron | 25.0% |
| !!! | TCAATTTTCAACGTGTTATT+TGG | - | chr8.4:984166-984185 | MS.gene43416:intron | 25.0% |
| AAAAGTGAGACTAAAAACAC+TGG | - | chr8.4:984209-984228 | MS.gene43416:intron | 30.0% | |
| AAAGAGAGGTCATTAAATTG+AGG | - | chr8.4:984667-984686 | MS.gene43416:CDS | 30.0% | |
| AAGAAAAGAAAACAGAAGCA+AGG | + | chr8.4:983001-983020 | None:intergenic | 30.0% | |
| CAATGTTATAAAATTGCTGC+AGG | - | chr8.4:985344-985363 | MS.gene43416:CDS | 30.0% | |
| CAGAAAACATGTTGAAGAAA+AGG | - | chr8.4:984449-984468 | MS.gene43416:intron | 30.0% | |
| CAGGATCATATAAACTTCAA+AGG | + | chr8.4:983594-983613 | None:intergenic | 30.0% | |
| CTACATTTGCAAAGACATAA+TGG | + | chr8.4:984032-984051 | None:intergenic | 30.0% | |
| TAAAAAACAACACACACTGT+TGG | - | chr8.4:984379-984398 | MS.gene43416:intron | 30.0% | |
| TAAATTATTACCGGTGTCTT+CGG | - | chr8.4:984895-984914 | MS.gene43416:intron | 30.0% | |
| TATTATAAGCGCATTAGTGT+TGG | + | chr8.4:983786-983805 | None:intergenic | 30.0% | |
| TGAAAAGGAAAATGAGATAC+AGG | - | chr8.4:984497-984516 | MS.gene43416:intron | 30.0% | |
| TTATGGTGATAAAACAAGTC+TGG | + | chr8.4:983082-983101 | None:intergenic | 30.0% | |
| TTCACCATTTGCAATTCTAT+TGG | + | chr8.4:983463-983482 | None:intergenic | 30.0% | |
| TTGATTGGACTCCTTAAATA+TGG | + | chr8.4:983753-983772 | None:intergenic | 30.0% | |
| TTTGTTTGGTTGATCTTATG+TGG | - | chr8.4:983358-983377 | MS.gene43416:intron | 30.0% | |
| ! | AGGGTAAGTTTAAGTTTAAG+AGG | - | chr8.4:983705-983724 | MS.gene43416:intron | 30.0% |
| ! | GGGTAAGTTTAAGTTTAAGA+GGG | - | chr8.4:983706-983725 | MS.gene43416:intron | 30.0% |
| !! | TGTTATTTGGTGTTTACTTC+AGG | - | chr8.4:984179-984198 | MS.gene43416:intron | 30.0% |
| !!! | GTGTGTCACAGTTTTTTTTT+AGG | - | chr8.4:983192-983211 | MS.gene43416:intron | 30.0% |
| !!! | TGTCAGGTTTTTTGTATGAT+AGG | - | chr8.4:984640-984659 | MS.gene43416:CDS | 30.0% |
| AAAGGAAAATGAGATACAGG+TGG | - | chr8.4:984500-984519 | MS.gene43416:intron | 35.0% | |
| AAATGTAGACAGAGATGCAA+AGG | - | chr8.4:984044-984063 | MS.gene43416:CDS | 35.0% | |
| AAATTATTACCGGTGTCTTC+GGG | - | chr8.4:984896-984915 | MS.gene43416:intron | 35.0% | |
| AACTGATTATGATGCCTTGT+TGG | - | chr8.4:982931-982950 | MS.gene43416:CDS | 35.0% | |
| AGCTTGCAAATTACTGTCTT+TGG | + | chr8.4:984706-984725 | None:intergenic | 35.0% | |
| ATAAGTTCCCCAACAGAAAA+TGG | - | chr8.4:984282-984301 | MS.gene43416:intron | 35.0% | |
| ATACATAGCTAGTGAAAGTC+GGG | + | chr8.4:984765-984784 | None:intergenic | 35.0% | |
| ATGTTTCACAGTCTACAAGT+AGG | - | chr8.4:984962-984981 | MS.gene43416:intron | 35.0% | |
| ATTGAATGTAACCATGTGTC+AGG | + | chr8.4:984861-984880 | None:intergenic | 35.0% | |
| GATACATAGCTAGTGAAAGT+CGG | + | chr8.4:984766-984785 | None:intergenic | 35.0% | |
| GTTCAGTATGTTATATGGAG+AGG | + | chr8.4:985097-985116 | None:intergenic | 35.0% | |
| TGAGTTCGTTACTGTAGTTT+AGG | - | chr8.4:985012-985031 | MS.gene43416:CDS | 35.0% | |
| TGATCTTATGTGGTAACTTG+TGG | - | chr8.4:983368-983387 | MS.gene43416:intron | 35.0% | |
| TTAGTTCCACGAACATATTC+TGG | - | chr8.4:982956-982975 | MS.gene43416:CDS | 35.0% | |
| ! | ACTGATTATGATGCCTTGTT+GGG | - | chr8.4:982932-982951 | MS.gene43416:CDS | 35.0% |
| ! | AGTATTTAAGGCATGAAAGC+AGG | + | chr8.4:983613-983632 | None:intergenic | 35.0% |
| ! | AGTCATTTGGTTTCTTGCTT+TGG | + | chr8.4:984602-984621 | None:intergenic | 35.0% |
| !!! | TGTGATGTGGATCTCTTTTT+TGG | + | chr8.4:984312-984331 | None:intergenic | 35.0% |
| AAAACAACACACACTGTTGG+AGG | - | chr8.4:984382-984401 | MS.gene43416:intron | 40.0% | |
| AAACAACACACACTGTTGGA+GGG | - | chr8.4:984383-984402 | MS.gene43416:intron | 40.0% | |
| AAGAAAACAGAAGCAAGGCA+AGG | + | chr8.4:982996-983015 | None:intergenic | 40.0% | |
| ACACGTGTCAAACATTGACA+CGG | + | chr8.4:984816-984835 | None:intergenic | 40.0% | |
| ACATAGGAACTACCTTTAGC+TGG | + | chr8.4:982808-982827 | None:intergenic | 40.0% | |
| AGAAGAGAGAAGGATTATGC+AGG | - | chr8.4:983536-983555 | MS.gene43416:CDS | 40.0% | |
| AGACTAAAAACACTGGAGGA+AGG | - | chr8.4:984216-984235 | MS.gene43416:intron | 40.0% | |
| AGTGAGACTAAAAACACTGG+AGG | - | chr8.4:984212-984231 | MS.gene43416:intron | 40.0% | |
| ATACCAGTGTATCCAGCTAA+AGG | - | chr8.4:982793-982812 | MS.gene43416:intron | 40.0% | |
| ATGAGAAAAGGACACTAGAG+AGG | - | chr8.4:983412-983431 | MS.gene43416:intron | 40.0% | |
| CAAATGGTGAAGCTAATGAG+TGG | - | chr8.4:983472-983491 | MS.gene43416:CDS | 40.0% | |
| CATGAAGTATGGAATCTGGT+TGG | + | chr8.4:983056-983075 | None:intergenic | 40.0% | |
| CCAAGTAAAGTTGCTGATAG+TGG | - | chr8.4:984474-984493 | MS.gene43416:intron | 40.0% | |
| CCACTATCAGCAACTTTACT+TGG | + | chr8.4:984477-984496 | None:intergenic | 40.0% | |
| GAAACAAAGACTCCTCCAAA+AGG | - | chr8.4:985264-985283 | MS.gene43416:intron | 40.0% | |
| GCTAGCAAGGGTAAAAGTTT+CGG | - | chr8.4:983437-983456 | MS.gene43416:CDS | 40.0% | |
| GCTTCATGAAGTATGGAATC+TGG | + | chr8.4:983060-983079 | None:intergenic | 40.0% | |
| GGCAATGTTGTACTCAATGA+TGG | + | chr8.4:983035-983054 | None:intergenic | 40.0% | |
| GTCAGTATCAGAAACCAACA+CGG | - | chr8.4:984834-984853 | MS.gene43416:intron | 40.0% | |
| GTGGAAGGATGAAAATGACA+AGG | - | chr8.4:983491-983510 | MS.gene43416:CDS | 40.0% | |
| TATATCAGAGAGAACAGCCA+AGG | - | chr8.4:984084-984103 | MS.gene43416:CDS | 40.0% | |
| TCGGCCAATAGAATTGCAAA+TGG | - | chr8.4:983456-983475 | MS.gene43416:CDS | 40.0% | |
| TGAGAAAAGGACACTAGAGA+GGG | - | chr8.4:983413-983432 | MS.gene43416:CDS | 40.0% | |
| TGTTGGAGGGAATTCAAAAC+AGG | - | chr8.4:984396-984415 | MS.gene43416:intron | 40.0% | |
| TTAAGGAGTCCAATCAAGAG+AGG | - | chr8.4:983756-983775 | MS.gene43416:intron | 40.0% | |
| ! | AAGTCTGGCTTCATGAAGTA+TGG | + | chr8.4:983067-983086 | None:intergenic | 40.0% |
| ! | CTTCACTTTCAGCATTGAAC+TGG | + | chr8.4:984545-984564 | None:intergenic | 40.0% |
| ! | GGGTTAGTGTCAATGTTGTT+TGG | - | chr8.4:984916-984935 | MS.gene43416:intron | 40.0% |
| ! | TATCAGCCACACTAACCTTT+TGG | + | chr8.4:985282-985301 | None:intergenic | 40.0% |
| ! | TTGGACCACCATTTTCTGTT+GGG | + | chr8.4:984293-984312 | None:intergenic | 40.0% |
| ! | TTTGGACCACCATTTTCTGT+TGG | + | chr8.4:984294-984313 | None:intergenic | 40.0% |
| !! | AGTTGCTGATAGTGGTGAAA+AGG | - | chr8.4:984482-984501 | MS.gene43416:intron | 40.0% |
| ACTCCTCCAAAAGGTTAGTG+TGG | - | chr8.4:985273-985292 | MS.gene43416:intron | 45.0% | |
| AGAAGCTCTTGGTTGTGATG+TGG | + | chr8.4:984325-984344 | None:intergenic | 45.0% | |
| AGATGCAGCTGCTAGAGAAA+AGG | - | chr8.4:985199-985218 | MS.gene43416:intron | 45.0% | |
| AGCAATGGCTAGAAGAGAGA+AGG | - | chr8.4:983526-983545 | MS.gene43416:CDS | 45.0% | |
| AGTTCCCCAACAGAAAATGG+TGG | - | chr8.4:984285-984304 | MS.gene43416:intron | 45.0% | |
| CAAGGCAGAATCACAGATGA+AGG | - | chr8.4:984102-984121 | MS.gene43416:intron | 45.0% | |
| CACGTGTCAAACATTGACAC+GGG | + | chr8.4:984815-984834 | None:intergenic | 45.0% | |
| CAGACTCCAGAATATGTTCG+TGG | + | chr8.4:982965-982984 | None:intergenic | 45.0% | |
| CTACCTTTAGCTGGATACAC+TGG | + | chr8.4:982799-982818 | None:intergenic | 45.0% | |
| CTTCATCTGTGATTCTGCCT+TGG | + | chr8.4:984104-984123 | None:intergenic | 45.0% | |
| GAGAGCCAATTACCTGATCT+GGG | + | chr8.4:982888-982907 | None:intergenic | 45.0% | |
| GTATGATAGGCTGCAAAGAG+AGG | - | chr8.4:984653-984672 | MS.gene43416:CDS | 45.0% | |
| GTTGTACTCAATGATGGCTC+CGG | + | chr8.4:983029-983048 | None:intergenic | 45.0% | |
| TCGTGGAACTAATCCCAACA+AGG | + | chr8.4:982948-982967 | None:intergenic | 45.0% | |
| TCTTCTAGCCATTGCTTGAC+AGG | + | chr8.4:983522-983541 | None:intergenic | 45.0% | |
| TGATGCCCAGATCAGGTAAT+TGG | - | chr8.4:982880-982899 | MS.gene43416:CDS | 45.0% | |
| TGGTGAAGCTAATGAGTGGA+AGG | - | chr8.4:983476-983495 | MS.gene43416:CDS | 45.0% | |
| TTACCTGATCTGGGCATCAA+TGG | + | chr8.4:982879-982898 | None:intergenic | 45.0% | |
| TTTCTTCCGCTCTACTTCCA+TGG | + | chr8.4:985171-985190 | None:intergenic | 45.0% | |
| ! | TGGACCACCATTTTCTGTTG+GGG | + | chr8.4:984292-984311 | None:intergenic | 45.0% |
| ACTAGAGAGGGAGCTAGCAA+GGG | - | chr8.4:983425-983444 | MS.gene43416:CDS | 50.0% | |
| AGGGAGAAAGTTGCAAGAGC+AGG | - | chr8.4:983117-983136 | MS.gene43416:intron | 50.0% | |
| AGGTCATGCCTGTCAAGCAA+TGG | - | chr8.4:983511-983530 | MS.gene43416:CDS | 50.0% | |
| CAACCAAGAGCTTCTGCGAT+TGG | - | chr8.4:984330-984349 | MS.gene43416:intron | 50.0% | |
| CATCCATTGATGCCCAGATC+AGG | - | chr8.4:982873-982892 | MS.gene43416:CDS | 50.0% | |
| CCAAGTCCATGGAAGTAGAG+CGG | - | chr8.4:985162-985181 | MS.gene43416:intron | 50.0% | |
| CGAGAGCCAATTACCTGATC+TGG | + | chr8.4:982889-982908 | None:intergenic | 50.0% | |
| CTTCCAATCGCAGAAGCTCT+TGG | + | chr8.4:984336-984355 | None:intergenic | 50.0% | |
| GTTGGACAGCCTCTCTTGAT+TGG | + | chr8.4:983768-983787 | None:intergenic | 50.0% | |
| TCGTCACTGCACGAGTCATT+TGG | + | chr8.4:984615-984634 | None:intergenic | 50.0% | |
| TGACACTAACCCGAAGACAC+CGG | + | chr8.4:984908-984927 | None:intergenic | 50.0% | |
| TGACTCGTGCAGTGACGATT+TGG | - | chr8.4:984617-984636 | MS.gene43416:CDS | 50.0% | |
| TGCAGCTGCTAGAGAAAAGG+AGG | - | chr8.4:985202-985221 | MS.gene43416:intron | 50.0% | |
| ! | CAGCCACACTAACCTTTTGG+AGG | + | chr8.4:985279-985298 | None:intergenic | 50.0% |
| ! | TGATGCACTGACCAAGTCCA+TGG | - | chr8.4:985151-985170 | MS.gene43416:intron | 50.0% |
| !! | TGCAGTGACGATTTGGTGTC+AGG | - | chr8.4:984624-984643 | MS.gene43416:CDS | 50.0% |
| ACCAACACGGTCCTGACACA+TGG | - | chr8.4:984847-984866 | MS.gene43416:intron | 55.0% | |
| ACCATGTGTCAGGACCGTGT+TGG | + | chr8.4:984851-984870 | None:intergenic | 55.0% | |
| CACTAGAGAGGGAGCTAGCA+AGG | - | chr8.4:983424-983443 | MS.gene43416:CDS | 55.0% | |
| CCGCTCTACTTCCATGGACT+TGG | + | chr8.4:985165-985184 | None:intergenic | 55.0% | |
| GGCTCTCGAAAACGCGAGTA+AGG | - | chr8.4:982901-982920 | MS.gene43416:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 982772 | 985384 | 982772 | ID=MS.gene43416 |
| chr8.4 | mRNA | 982772 | 985384 | 982772 | ID=MS.gene43416.t1;Parent=MS.gene43416 |
| chr8.4 | exon | 985342 | 985384 | 985342 | ID=MS.gene43416.t1.exon1;Parent=MS.gene43416.t1 |
| chr8.4 | CDS | 985342 | 985384 | 985342 | ID=cds.MS.gene43416.t1;Parent=MS.gene43416.t1 |
| chr8.4 | exon | 985006 | 985124 | 985006 | ID=MS.gene43416.t1.exon2;Parent=MS.gene43416.t1 |
| chr8.4 | CDS | 985006 | 985124 | 985006 | ID=cds.MS.gene43416.t1;Parent=MS.gene43416.t1 |
| chr8.4 | exon | 984599 | 984745 | 984599 | ID=MS.gene43416.t1.exon3;Parent=MS.gene43416.t1 |
| chr8.4 | CDS | 984599 | 984745 | 984599 | ID=cds.MS.gene43416.t1;Parent=MS.gene43416.t1 |
| chr8.4 | exon | 984033 | 984104 | 984033 | ID=MS.gene43416.t1.exon4;Parent=MS.gene43416.t1 |
| chr8.4 | CDS | 984033 | 984104 | 984033 | ID=cds.MS.gene43416.t1;Parent=MS.gene43416.t1 |
| chr8.4 | exon | 983795 | 983955 | 983795 | ID=MS.gene43416.t1.exon5;Parent=MS.gene43416.t1 |
| chr8.4 | CDS | 983795 | 983955 | 983795 | ID=cds.MS.gene43416.t1;Parent=MS.gene43416.t1 |
| chr8.4 | exon | 983413 | 983704 | 983413 | ID=MS.gene43416.t1.exon6;Parent=MS.gene43416.t1 |
| chr8.4 | CDS | 983413 | 983704 | 983413 | ID=cds.MS.gene43416.t1;Parent=MS.gene43416.t1 |
| chr8.4 | exon | 982871 | 983010 | 982871 | ID=MS.gene43416.t1.exon7;Parent=MS.gene43416.t1 |
| chr8.4 | CDS | 982871 | 983010 | 982871 | ID=cds.MS.gene43416.t1;Parent=MS.gene43416.t1 |
| chr8.4 | exon | 982772 | 982790 | 982772 | ID=MS.gene43416.t1.exon8;Parent=MS.gene43416.t1 |
| chr8.4 | CDS | 982772 | 982790 | 982772 | ID=cds.MS.gene43416.t1;Parent=MS.gene43416.t1 |
| Gene Sequence |
| Protein sequence |
