Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43479.t1 | XP_013458715.1 | 95.8 | 284 | 12 | 0 | 14 | 297 | 19 | 302 | 2.20E-148 | 535 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43479.t1 | Q6DEY1 | 27.5 | 273 | 147 | 9 | 18 | 285 | 4 | 230 | 1.0e-13 | 79.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43479.t1 | A0A072USW8 | 95.8 | 284 | 12 | 0 | 14 | 297 | 19 | 302 | 1.6e-148 | 535.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057208 | MS.gene43479 | 0.804756 | 1.85E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43479.t1 | MTR_4g134630 | 95.033 | 302 | 10 | 1 | 1 | 297 | 1 | 302 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43479.t1 | AT2G02570 | 66.667 | 297 | 85 | 3 | 12 | 297 | 6 | 299 | 1.85e-143 | 405 |
| MS.gene43479.t1 | AT2G02570 | 66.667 | 297 | 85 | 3 | 12 | 297 | 6 | 299 | 1.85e-143 | 405 |
| MS.gene43479.t1 | AT2G02570 | 66.667 | 297 | 85 | 3 | 12 | 297 | 6 | 299 | 1.85e-143 | 405 |
| MS.gene43479.t1 | AT2G02570 | 63.300 | 297 | 83 | 4 | 12 | 297 | 6 | 287 | 9.88e-133 | 378 |
Find 78 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCCGCATCTTAGACTTAA+AGG | 0.209233 | 8.4:-241940 | None:intergenic |
| TGTGGGTGGGTGTTGGAGAT+TGG | 0.224072 | 8.4:-240206 | None:intergenic |
| GTGGGTGGGTGTTGGAGATT+GGG | 0.293108 | 8.4:-240205 | None:intergenic |
| GGCTCTATACGAAGCTTTGC+AGG | 0.323302 | 8.4:-241634 | None:intergenic |
| TCCTGTTGGCACCAGAGTTC+AGG | 0.328664 | 8.4:+240359 | MS.gene43479:CDS |
| TCAACAGTTCCTTCTTGAAT+TGG | 0.334241 | 8.4:-241511 | None:intergenic |
| CTTCAAGATTGGTTTCTTCT+CGG | 0.338340 | 8.4:+242643 | MS.gene43479:intron |
| AGAAGGAACTGTTGATCCTT+TGG | 0.344531 | 8.4:+241519 | MS.gene43479:CDS |
| TGTTGGAGATTGGGTGGAAG+TGG | 0.361676 | 8.4:-240196 | None:intergenic |
| CAAGGAAAGGTTGGTGTGAC+TGG | 0.362128 | 8.4:+242707 | MS.gene43479:CDS |
| TTACAAACAACAACTTCATC+AGG | 0.389377 | 8.4:+239550 | MS.gene43479:CDS |
| CAACAGGAAATTTGTGTTGA+TGG | 0.395602 | 8.4:-240344 | None:intergenic |
| ACCTTTCCTTGAGGATCATC+AGG | 0.403855 | 8.4:-242695 | None:intergenic |
| AACACCCACCCACAATAAAC+TGG | 0.407152 | 8.4:+240215 | MS.gene43479:CDS |
| AAGGTTGGTGTGACTGGAAG+TGG | 0.416029 | 8.4:+242713 | MS.gene43479:CDS |
| TTGAATTGGCCTTATGTTAG+CGG | 0.420910 | 8.4:-241497 | None:intergenic |
| CAGGCTGTTTATAGTGATGA+TGG | 0.431282 | 8.4:+240378 | MS.gene43479:CDS |
| GCCTGAACTCTGGTGCCAAC+AGG | 0.438372 | 8.4:-240360 | None:intergenic |
| TTCAAGATTGGTTTCTTCTC+GGG | 0.438391 | 8.4:+242644 | MS.gene43479:intron |
| AGTTTATTGTGGGTGGGTGT+TGG | 0.447717 | 8.4:-240213 | None:intergenic |
| ACACAACTCACCACATCCTC+AGG | 0.452174 | 8.4:-241664 | None:intergenic |
| ACCACATCCTCAGGGTCATC+GGG | 0.452351 | 8.4:-241655 | None:intergenic |
| GTTGGAGATTGGGTGGAAGT+GGG | 0.456301 | 8.4:-240195 | None:intergenic |
| AAGAAGATGCAAGGTGGTAG+CGG | 0.461653 | 8.4:+239470 | None:intergenic |
| TTGTTTGTAAGTAGAAAGAT+TGG | 0.462862 | 8.4:-239537 | None:intergenic |
| TACAATCGAGAATGATGATT+AGG | 0.470705 | 8.4:+242790 | MS.gene43479:CDS |
| TAGCTGACATAATAACCATT+TGG | 0.474920 | 8.4:-240435 | None:intergenic |
| CACCACATCCTCAGGGTCAT+CGG | 0.475099 | 8.4:-241656 | None:intergenic |
| GGTGTGACTGGAAGTGGGAA+AGG | 0.475251 | 8.4:+242719 | MS.gene43479:CDS |
| AGGTAGATCCCGCTAACATA+AGG | 0.476232 | 8.4:+241488 | MS.gene43479:intron |
| TCGACATACTCAGAATTAGA+TGG | 0.482981 | 8.4:-239692 | None:intergenic |
| TGAATTGGCCTTATGTTAGC+GGG | 0.489549 | 8.4:-241496 | None:intergenic |
| ATTATGTCAGCTATGACACT+TGG | 0.510217 | 8.4:+240445 | MS.gene43479:CDS |
| GTCGAGGCTTACACACCAAA+TGG | 0.519193 | 8.4:+240420 | MS.gene43479:CDS |
| AAAATAAGCGGCAAAATGCT+TGG | 0.521225 | 8.4:+241982 | MS.gene43479:CDS |
| AGGCTGTTTATAGTGATGAT+GGG | 0.524754 | 8.4:+240379 | MS.gene43479:CDS |
| CGTACATACCAGTTTATTGT+GGG | 0.530390 | 8.4:-240223 | None:intergenic |
| AGAAGATGCAAGGTGGTAGC+GGG | 0.534654 | 8.4:+239471 | None:intergenic |
| TTATGTCAGCTATGACACTT+GGG | 0.535353 | 8.4:+240446 | MS.gene43479:CDS |
| ACATACCAGTTTATTGTGGG+TGG | 0.536199 | 8.4:-240220 | None:intergenic |
| AGTTGCTGAAGCTACAAAGC+AGG | 0.562918 | 8.4:+241555 | MS.gene43479:CDS |
| TCCTGATGATCCTCAAGGAA+AGG | 0.563297 | 8.4:+242694 | MS.gene43479:CDS |
| CTACAAAGCAGGCTATCAAA+CGG | 0.564191 | 8.4:+241566 | MS.gene43479:CDS |
| GGTGGGTGTTGGAGATTGGG+TGG | 0.565121 | 8.4:-240202 | None:intergenic |
| ACGTACATACCAGTTTATTG+TGG | 0.565424 | 8.4:-240224 | None:intergenic |
| ACTATAAACAGCCTGAACTC+TGG | 0.565916 | 8.4:-240370 | None:intergenic |
| ATAAAGAGAAAGAAGATGCA+AGG | 0.565982 | 8.4:+239461 | None:intergenic |
| AAATCTCCTGATGATCCTCA+AGG | 0.567592 | 8.4:+242689 | MS.gene43479:CDS |
| GCAAGGTGGTAGCGGGCGTG+AGG | 0.569536 | 8.4:+239478 | MS.gene43479:CDS |
| CAAACGGAAAATTGCGCAAG+CGG | 0.570501 | 8.4:+241582 | MS.gene43479:CDS |
| CATCAACACAAATTTCCTGT+TGG | 0.571494 | 8.4:+240345 | MS.gene43479:CDS |
| GATGATCCTCAAGGAAAGGT+TGG | 0.575071 | 8.4:+242698 | MS.gene43479:CDS |
| GCCCGATGACCCTGAGGATG+TGG | 0.576654 | 8.4:+241654 | MS.gene43479:CDS |
| ATTTGTGTTGATGGTCAAAG+TGG | 0.580757 | 8.4:-240335 | None:intergenic |
| AACATAAGGCCAATTCAAGA+AGG | 0.580826 | 8.4:+241502 | MS.gene43479:CDS |
| ATTTGGTGTGTAAGCCTCGA+CGG | 0.580845 | 8.4:-240418 | None:intergenic |
| TTTATAGTGATGATGGGGAG+TGG | 0.581469 | 8.4:+240385 | MS.gene43479:CDS |
| GGCTGTTTATAGTGATGATG+GGG | 0.588465 | 8.4:+240380 | MS.gene43479:CDS |
| AGGTTGGTGTGACTGGAAGT+GGG | 0.590449 | 8.4:+242714 | MS.gene43479:CDS |
| CATACCAGTTTATTGTGGGT+GGG | 0.590879 | 8.4:-240219 | None:intergenic |
| CAGCAGTTCCAGACAACCAA+GGG | 0.593266 | 8.4:+242005 | MS.gene43479:CDS |
| GATGGTCAAAGTGGGTATGA+AGG | 0.597115 | 8.4:-240326 | None:intergenic |
| ACTCGCTCAGCTTCAACCAA+AGG | 0.606860 | 8.4:-241535 | None:intergenic |
| AGATTGGTTTCTTCTCGGGA+AGG | 0.610846 | 8.4:+242648 | MS.gene43479:intron |
| AAGAGAAAGAAGATGCAAGG+TGG | 0.627035 | 8.4:+239464 | None:intergenic |
| TTTGTGTTGATGGTCAAAGT+GGG | 0.628380 | 8.4:-240334 | None:intergenic |
| CACTTGGGGTAATAAAGAAG+AGG | 0.630391 | 8.4:+240461 | MS.gene43479:CDS |
| TTGAAGTCACCCAAAATAAG+CGG | 0.630424 | 8.4:+241970 | MS.gene43479:CDS |
| GCAGCAGTTCCAGACAACCA+AGG | 0.644897 | 8.4:+242004 | MS.gene43479:CDS |
| CACAACTCACCACATCCTCA+GGG | 0.646183 | 8.4:-241663 | None:intergenic |
| TAATTCTGAGTATGTCGACA+TGG | 0.651465 | 8.4:+239697 | MS.gene43479:CDS |
| CTTTAAGTCTAAGATGCGGA+TGG | 0.652129 | 8.4:+241941 | MS.gene43479:CDS |
| GTCACACCAACCTTTCCTTG+AGG | 0.671537 | 8.4:-242704 | None:intergenic |
| GTGGTATGATGCAACCGTCG+AGG | 0.674698 | 8.4:+240404 | MS.gene43479:CDS |
| TATGTCAGCTATGACACTTG+GGG | 0.685361 | 8.4:+240447 | MS.gene43479:CDS |
| ATGCCTTTAAGTCTAAGATG+CGG | 0.694744 | 8.4:+241937 | MS.gene43479:CDS |
| TATAGAGCCCGATGACCCTG+AGG | 0.709309 | 8.4:+241648 | MS.gene43479:CDS |
| CATGGAAAGAGAGCTCTCCG+AGG | 0.756940 | 8.4:+239715 | MS.gene43479:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTGAAAAAAGAATATA+AGG | + | chr8.4:242501-242520 | MS.gene43479:intron | 10.0% |
| !!! | AATAAAAATGAATATTTTGT+AGG | + | chr8.4:241373-241392 | MS.gene43479:intron | 10.0% |
| !!! | ATAAAAATGAATATTTTGTA+GGG | + | chr8.4:241374-241393 | MS.gene43479:intron | 10.0% |
| !!! | TTTTCTTGTTAATTAATAAT+GGG | - | chr8.4:239859-239878 | None:intergenic | 10.0% |
| !! | AAATAGATAAATAATGTTGT+TGG | - | chr8.4:240021-240040 | None:intergenic | 15.0% |
| !!! | AAACTCATTATAAAATTTTC+TGG | + | chr8.4:240831-240850 | MS.gene43479:intron | 15.0% |
| !!! | AACAATAAAAAGTATTTTAC+TGG | + | chr8.4:241082-241101 | MS.gene43479:intron | 15.0% |
| !!! | GTTGTTATTATTAATTGAAT+GGG | - | chr8.4:239837-239856 | None:intergenic | 15.0% |
| !!! | GTTTTCTTGTTAATTAATAA+TGG | - | chr8.4:239860-239879 | None:intergenic | 15.0% |
| !!! | TGGAGTATTTTTTTTTTATA+GGG | - | chr8.4:241415-241434 | None:intergenic | 15.0% |
| !!! | TTTGTTTGTTTGTTTTTTTA+GGG | + | chr8.4:239577-239596 | MS.gene43479:intron | 15.0% |
| !! | AACATGGAAAGAAAAAAAAA+AGG | - | chr8.4:240596-240615 | None:intergenic | 20.0% |
| !! | AGAACACTTGTTTATATAAA+AGG | - | chr8.4:241280-241299 | None:intergenic | 20.0% |
| !! | ATAAAAAAAAAATACTCCAG+TGG | + | chr8.4:241416-241435 | MS.gene43479:intron | 20.0% |
| !! | ATATAAAACACAAATATCAG+TGG | - | chr8.4:242551-242570 | None:intergenic | 20.0% |
| !! | TAATGCAATGGTAAATAAAT+TGG | - | chr8.4:240562-240581 | None:intergenic | 20.0% |
| !! | TAATTAATATTAGTGAGAGT+TGG | - | chr8.4:240070-240089 | None:intergenic | 20.0% |
| !! | TATAATGCTGAAGAAAAAAA+CGG | - | chr8.4:240760-240779 | None:intergenic | 20.0% |
| !!! | ACCTGTTTTTATAAAATGTA+GGG | + | chr8.4:241326-241345 | MS.gene43479:intron | 20.0% |
| !!! | AGCTAAAAAATATTTTCACA+TGG | - | chr8.4:242386-242405 | None:intergenic | 20.0% |
| !!! | ATTAATGTTTGCTATTGAAA+GGG | + | chr8.4:241168-241187 | MS.gene43479:intron | 20.0% |
| !!! | CTGGAGTATTTTTTTTTTAT+AGG | - | chr8.4:241416-241435 | None:intergenic | 20.0% |
| !!! | GGTTGTTATTATTAATTGAA+TGG | - | chr8.4:239838-239857 | None:intergenic | 20.0% |
| !!! | GTCTTAATAAATATTTTCCT+TGG | + | chr8.4:241732-241751 | MS.gene43479:intron | 20.0% |
| !!! | GTTTGTTTGTTTGTTTTTTT+AGG | + | chr8.4:239576-239595 | MS.gene43479:intron | 20.0% |
| !!! | TACCTGTTTTTATAAAATGT+AGG | + | chr8.4:241325-241344 | MS.gene43479:intron | 20.0% |
| ! | AAAAGGTAGGAAACTAAAAA+GGG | - | chr8.4:241263-241282 | None:intergenic | 25.0% |
| ! | AATAGTAGAGAAATTGAGAA+AGG | - | chr8.4:242047-242066 | None:intergenic | 25.0% |
| ! | AGAAAAGAAAAGAAAAACCT+CGG | - | chr8.4:239735-239754 | None:intergenic | 25.0% |
| ! | AGACAGATTCATAATTCTAT+AGG | - | chr8.4:241212-241231 | None:intergenic | 25.0% |
| ! | AGGGTCCAAAAAATATATAT+AGG | - | chr8.4:241244-241263 | None:intergenic | 25.0% |
| ! | CACTTGTTTATATAAAAGGT+AGG | - | chr8.4:241276-241295 | None:intergenic | 25.0% |
| ! | GACAGATTCATAATTCTATA+GGG | - | chr8.4:241211-241230 | None:intergenic | 25.0% |
| ! | GCTTCAAATTGAAATTGAAA+AGG | + | chr8.4:239794-239813 | MS.gene43479:intron | 25.0% |
| ! | GGGTCCAAAAAATATATATA+GGG | - | chr8.4:241243-241262 | None:intergenic | 25.0% |
| ! | TAAAAGGTAGGAAACTAAAA+AGG | - | chr8.4:241264-241283 | None:intergenic | 25.0% |
| ! | TATGTCTTAAAGTGACTAAT+GGG | + | chr8.4:242143-242162 | MS.gene43479:intron | 25.0% |
| ! | TGATGAGTAATGAATAGATT+AGG | - | chr8.4:240275-240294 | None:intergenic | 25.0% |
| ! | TTAGTTGAGAAAAGAAATAG+AGG | + | chr8.4:240944-240963 | MS.gene43479:intron | 25.0% |
| ! | TTCTCAACTAAACAAAAAAC+TGG | - | chr8.4:240935-240954 | None:intergenic | 25.0% |
| ! | TTGTTTGTAAGTAGAAAGAT+TGG | - | chr8.4:239540-239559 | None:intergenic | 25.0% |
| !! | ATAAATTCAACAACTTTTCC+AGG | - | chr8.4:242486-242505 | None:intergenic | 25.0% |
| !! | ATTGTGAAAATTCTAGAGAT+CGG | - | chr8.4:242528-242547 | None:intergenic | 25.0% |
| !! | TAAATTCAACAACTTTTCCA+GGG | - | chr8.4:242485-242504 | None:intergenic | 25.0% |
| !! | TTTTCTGCAAATGTATTTCT+TGG | + | chr8.4:241798-241817 | MS.gene43479:intron | 25.0% |
| !!! | CATTAATGTTTGCTATTGAA+AGG | + | chr8.4:241167-241186 | MS.gene43479:intron | 25.0% |
| !!! | CCTGTTTTTATAAAATGTAG+GGG | + | chr8.4:241327-241346 | MS.gene43479:intron | 25.0% |
| !!! | CTATGTTTTTCACTGTTTTT+AGG | + | chr8.4:240302-240321 | MS.gene43479:intron | 25.0% |
| !!! | TCGTCCCTATATATATTTTT+TGG | + | chr8.4:241236-241255 | MS.gene43479:intron | 25.0% |
| !!! | TGTTTGTTTTTTTAGGGTTA+GGG | + | chr8.4:239583-239602 | MS.gene43479:intron | 25.0% |
| !!! | TTGTTTGTTTTTTTAGGGTT+AGG | + | chr8.4:239582-239601 | MS.gene43479:intron | 25.0% |
| AAAATCAGTAACTAAACCAC+TGG | - | chr8.4:241435-241454 | None:intergenic | 30.0% | |
| AATCTATTTACCCCTTGAAT+CGG | + | chr8.4:242416-242435 | MS.gene43479:intron | 30.0% | |
| ACAATACAGATGCAATAAGT+TGG | - | chr8.4:240725-240744 | None:intergenic | 30.0% | |
| AGAAAACTGGCAGATAAATT+TGG | - | chr8.4:241853-241872 | None:intergenic | 30.0% | |
| AGGGGCTAAAAATTGTTTAT+AGG | + | chr8.4:241345-241364 | MS.gene43479:intron | 30.0% | |
| ATTTAAGGAGACATTGGAAT+TGG | - | chr8.4:240111-240130 | None:intergenic | 30.0% | |
| GTATGTCTTAAAGTGACTAA+TGG | + | chr8.4:242142-242161 | MS.gene43479:intron | 30.0% | |
| TAGCTGACATAATAACCATT+TGG | - | chr8.4:240438-240457 | None:intergenic | 30.0% | |
| TAGTTTCTATGCAAGAATGT+AGG | + | chr8.4:242109-242128 | MS.gene43479:intron | 30.0% | |
| TATCATTGCAGTCATTAAGT+TGG | + | chr8.4:242304-242323 | MS.gene43479:intron | 30.0% | |
| TATGTTAGGATGGTCAAAAA+TGG | - | chr8.4:242184-242203 | None:intergenic | 30.0% | |
| TGAGTATCAAATCATGTAAC+AGG | + | chr8.4:240864-240883 | MS.gene43479:intron | 30.0% | |
| TGCAATGGTAAATAAATTGG+AGG | - | chr8.4:240559-240578 | None:intergenic | 30.0% | |
| TGTAGAATTTAAGGAGACAT+TGG | - | chr8.4:240117-240136 | None:intergenic | 30.0% | |
| TGTTGTATGTATCTATCTCA+TGG | - | chr8.4:239970-239989 | None:intergenic | 30.0% | |
| TTACAAACAACAACTTCATC+AGG | + | chr8.4:239550-239569 | MS.gene43479:CDS | 30.0% | |
| TTGTTCTTTCCATTTCAACA+AGG | - | chr8.4:241067-241086 | None:intergenic | 30.0% | |
| ! | AAGTTCTATGTGATTTTTGC+TGG | + | chr8.4:240649-240668 | MS.gene43479:intron | 30.0% |
| ! | AATTTATCTGCCAGTTTTCT+AGG | + | chr8.4:241853-241872 | MS.gene43479:intron | 30.0% |
| ! | AGTTAGCAAACATGTCATTT+AGG | - | chr8.4:241883-241902 | None:intergenic | 30.0% |
| ! | ATAAGTTGGAAATGCAATTG+TGG | - | chr8.4:240711-240730 | None:intergenic | 30.0% |
| ! | ATATGTTGCTTGCTTATTAC+AGG | + | chr8.4:241468-241487 | MS.gene43479:intron | 30.0% |
| ! | CCCCTACATTTTATAAAAAC+AGG | - | chr8.4:241330-241349 | None:intergenic | 30.0% |
| ! | GTTAGCAAACATGTCATTTA+GGG | - | chr8.4:241882-241901 | None:intergenic | 30.0% |
| ! | TATTTCATTTTGCTTAGCAG+TGG | - | chr8.4:240175-240194 | None:intergenic | 30.0% |
| ! | TTGTGAAAATTCTAGAGATC+GGG | - | chr8.4:242527-242546 | None:intergenic | 30.0% |
| !!! | AGAAAAGCATTTTCATCTGA+AGG | + | chr8.4:242763-242782 | MS.gene43479:CDS | 30.0% |
| !!! | GGTTTAGTTACTGATTTTCA+AGG | + | chr8.4:241437-241456 | MS.gene43479:intron | 30.0% |
| !!! | TTTTTTTAGGGTTAGGGTTA+GGG | + | chr8.4:239589-239608 | MS.gene43479:intron | 30.0% |
| AAAAGTAATACCATCAACCC+TGG | + | chr8.4:242465-242484 | MS.gene43479:intron | 35.0% | |
| AAAATAAGCGGCAAAATGCT+TGG | + | chr8.4:241982-242001 | MS.gene43479:CDS | 35.0% | |
| AAACGCTTCAATAAACGTGA+TGG | - | chr8.4:240911-240930 | None:intergenic | 35.0% | |
| AACATAAGGCCAATTCAAGA+AGG | + | chr8.4:241502-241521 | MS.gene43479:CDS | 35.0% | |
| AACCAAGGGAAAAGCAAAAA+AGG | + | chr8.4:242019-242038 | MS.gene43479:CDS | 35.0% | |
| AACGCTTCAATAAACGTGAT+GGG | - | chr8.4:240910-240929 | None:intergenic | 35.0% | |
| AATGTATGCAGATGTAATGC+AGG | - | chr8.4:240534-240553 | None:intergenic | 35.0% | |
| ACGTACATACCAGTTTATTG+TGG | - | chr8.4:240227-240246 | None:intergenic | 35.0% | |
| AGAGGAATCACTTTATCCTA+GGG | + | chr8.4:240962-240981 | MS.gene43479:intron | 35.0% | |
| AGCAAGATAGATAGAAGTGA+TGG | - | chr8.4:239915-239934 | None:intergenic | 35.0% | |
| AGGAATGAGATTTCTCAACT+TGG | - | chr8.4:240998-241017 | None:intergenic | 35.0% | |
| AGGCTGTTTATAGTGATGAT+GGG | + | chr8.4:240379-240398 | MS.gene43479:CDS | 35.0% | |
| ATGTATGCAGATGTAATGCA+GGG | - | chr8.4:240533-240552 | None:intergenic | 35.0% | |
| ATTATGTCAGCTATGACACT+TGG | + | chr8.4:240445-240464 | MS.gene43479:CDS | 35.0% | |
| CAACAGGAAATTTGTGTTGA+TGG | - | chr8.4:240347-240366 | None:intergenic | 35.0% | |
| CATCAACACAAATTTCCTGT+TGG | + | chr8.4:240345-240364 | MS.gene43479:CDS | 35.0% | |
| CCAAATATATCATGCACTCA+TGG | - | chr8.4:240798-240817 | None:intergenic | 35.0% | |
| CCATGAGTGCATGATATATT+TGG | + | chr8.4:240795-240814 | MS.gene43479:intron | 35.0% | |
| CGTACATACCAGTTTATTGT+GGG | - | chr8.4:240226-240245 | None:intergenic | 35.0% | |
| GCAAATGTATTTCTTGGTAG+TGG | + | chr8.4:241804-241823 | MS.gene43479:intron | 35.0% | |
| GCAAGATAGATAGAAGTGAT+GGG | - | chr8.4:239914-239933 | None:intergenic | 35.0% | |
| GTACGACATAGATAATGCAA+TGG | - | chr8.4:240574-240593 | None:intergenic | 35.0% | |
| TAATTCTGAGTATGTCGACA+TGG | + | chr8.4:239697-239716 | MS.gene43479:CDS | 35.0% | |
| TAGAACAAGAGATCAAACCA+AGG | - | chr8.4:241752-241771 | None:intergenic | 35.0% | |
| TAGAGGAATCACTTTATCCT+AGG | + | chr8.4:240961-240980 | MS.gene43479:intron | 35.0% | |
| TCAACAGTTCCTTCTTGAAT+TGG | - | chr8.4:241514-241533 | None:intergenic | 35.0% | |
| TCCTTAAATTCTACAACACC+AGG | + | chr8.4:240122-240141 | MS.gene43479:intron | 35.0% | |
| TCGACATACTCAGAATTAGA+TGG | - | chr8.4:239695-239714 | None:intergenic | 35.0% | |
| TCTCTAACCTGAAAAGAGAA+GGG | - | chr8.4:239656-239675 | None:intergenic | 35.0% | |
| TGTATGTATCTATCTCATGG+CGG | - | chr8.4:239967-239986 | None:intergenic | 35.0% | |
| TTATGTCAGCTATGACACTT+GGG | + | chr8.4:240446-240465 | MS.gene43479:CDS | 35.0% | |
| TTCTCTAACCTGAAAAGAGA+AGG | - | chr8.4:239657-239676 | None:intergenic | 35.0% | |
| TTGAAGTCACCCAAAATAAG+CGG | + | chr8.4:241970-241989 | MS.gene43479:CDS | 35.0% | |
| TTTAGGGAATCCTAGAAAAC+TGG | - | chr8.4:241866-241885 | None:intergenic | 35.0% | |
| ! | AAGCATTTTCATCTGAAGGA+TGG | + | chr8.4:242767-242786 | MS.gene43479:CDS | 35.0% |
| ! | ATGCCTTTAAGTCTAAGATG+CGG | + | chr8.4:241937-241956 | MS.gene43479:CDS | 35.0% |
| ! | CTTTTGTGATGTATTCACTG+TGG | + | chr8.4:242615-242634 | MS.gene43479:intron | 35.0% |
| ! | GAAAATGCTTTTCTCTTCTC+TGG | - | chr8.4:242757-242776 | None:intergenic | 35.0% |
| ! | GGCATGTATTTTCTTACGTT+TGG | - | chr8.4:241922-241941 | None:intergenic | 35.0% |
| ! | TTGTAAGTTGGATAGGAATG+AGG | + | chr8.4:242439-242458 | MS.gene43479:intron | 35.0% |
| ! | TTTGATTCCCTTCTCTTTTC+AGG | + | chr8.4:239646-239665 | MS.gene43479:intron | 35.0% |
| !! | AAGCATTTTGCCGCTTATTT+TGG | - | chr8.4:241983-242002 | None:intergenic | 35.0% |
| !! | ACCTGGTGTTGTAGAATTTA+AGG | - | chr8.4:240126-240145 | None:intergenic | 35.0% |
| !! | AGCATTTTGCCGCTTATTTT+GGG | - | chr8.4:241982-242001 | None:intergenic | 35.0% |
| !! | ATTTGTGTTGATGGTCAAAG+TGG | - | chr8.4:240338-240357 | None:intergenic | 35.0% |
| !! | CTTCAAGATTGGTTTCTTCT+CGG | + | chr8.4:242643-242662 | MS.gene43479:intron | 35.0% |
| !! | TTCAAGATTGGTTTCTTCTC+GGG | + | chr8.4:242644-242663 | MS.gene43479:intron | 35.0% |
| !! | TTGAATTGGCCTTATGTTAG+CGG | - | chr8.4:241500-241519 | None:intergenic | 35.0% |
| !! | TTTGTGTTGATGGTCAAAGT+GGG | - | chr8.4:240337-240356 | None:intergenic | 35.0% |
| !!! | CATCTGTTGATTTTCAGTCA+CGG | + | chr8.4:241605-241624 | MS.gene43479:CDS | 35.0% |
| !!! | GTTTTTTTAGGGTTAGGGTT+AGG | + | chr8.4:239588-239607 | MS.gene43479:intron | 35.0% |
| !!! | TACCTTTTTTGCTTTTCCCT+TGG | - | chr8.4:242024-242043 | None:intergenic | 35.0% |
| AAATCTCCTGATGATCCTCA+AGG | + | chr8.4:242689-242708 | MS.gene43479:CDS | 40.0% | |
| ACATACCAGTTTATTGTGGG+TGG | - | chr8.4:240223-240242 | None:intergenic | 40.0% | |
| ACTATAAACAGCCTGAACTC+TGG | - | chr8.4:240373-240392 | None:intergenic | 40.0% | |
| AGAAGGAACTGTTGATCCTT+TGG | + | chr8.4:241519-241538 | MS.gene43479:CDS | 40.0% | |
| CACTTGGGGTAATAAAGAAG+AGG | + | chr8.4:240461-240480 | MS.gene43479:CDS | 40.0% | |
| CAGGCTGTTTATAGTGATGA+TGG | + | chr8.4:240378-240397 | MS.gene43479:CDS | 40.0% | |
| CATACCAGTTTATTGTGGGT+GGG | - | chr8.4:240222-240241 | None:intergenic | 40.0% | |
| CATAGTAGCACACAAAGTAC+AGG | - | chr8.4:241018-241037 | None:intergenic | 40.0% | |
| CATCCGCATCTTAGACTTAA+AGG | - | chr8.4:241943-241962 | None:intergenic | 40.0% | |
| CCATGTTAGAGAAACAGAGT+TGG | + | chr8.4:240609-240628 | MS.gene43479:intron | 40.0% | |
| CTACAAAGCAGGCTATCAAA+CGG | + | chr8.4:241566-241585 | MS.gene43479:CDS | 40.0% | |
| GTTAGGATGGTCAAAAATGG+AGG | - | chr8.4:242181-242200 | None:intergenic | 40.0% | |
| TATCTATCTTGCTTCTGTGC+AGG | + | chr8.4:239922-239941 | MS.gene43479:intron | 40.0% | |
| TATGTCAGCTATGACACTTG+GGG | + | chr8.4:240447-240466 | MS.gene43479:CDS | 40.0% | |
| TGTTCTGTACTCCTTAGAGA+GGG | + | chr8.4:241294-241313 | MS.gene43479:intron | 40.0% | |
| TTCTAGCCTGAATTTACCAC+AGG | + | chr8.4:242274-242293 | MS.gene43479:intron | 40.0% | |
| TTCTCTCCTGTGGTAAATTC+AGG | - | chr8.4:242283-242302 | None:intergenic | 40.0% | |
| TTGATGCAATCCTAGTCCTA+TGG | + | chr8.4:240505-240524 | MS.gene43479:intron | 40.0% | |
| TTTGCAGCACCTTGTTGAAA+TGG | + | chr8.4:241055-241074 | MS.gene43479:intron | 40.0% | |
| ! | AACAACTTTTCCAGGGTTGA+TGG | - | chr8.4:242478-242497 | None:intergenic | 40.0% |
| ! | CAACTTACAACCGATTCAAG+GGG | - | chr8.4:242429-242448 | None:intergenic | 40.0% |
| ! | CCAACTCTGTTTCTCTAACA+TGG | - | chr8.4:240612-240631 | None:intergenic | 40.0% |
| ! | CCAACTTACAACCGATTCAA+GGG | - | chr8.4:242430-242449 | None:intergenic | 40.0% |
| ! | CTTTAAGTCTAAGATGCGGA+TGG | + | chr8.4:241941-241960 | MS.gene43479:CDS | 40.0% |
| ! | GAATCGGTTGTAAGTTGGAT+AGG | + | chr8.4:242432-242451 | MS.gene43479:intron | 40.0% |
| ! | GGCTGTTTATAGTGATGATG+GGG | + | chr8.4:240380-240399 | MS.gene43479:CDS | 40.0% |
| ! | GTACTTTTAGTCCCTCTCTA+AGG | - | chr8.4:241308-241327 | None:intergenic | 40.0% |
| ! | TAAGTTGGATAGGAATGAGG+AGG | + | chr8.4:242442-242461 | MS.gene43479:intron | 40.0% |
| ! | TCCAACTTACAACCGATTCA+AGG | - | chr8.4:242431-242450 | None:intergenic | 40.0% |
| !! | CATTGACTCGTATGTTAGGA+TGG | - | chr8.4:242194-242213 | None:intergenic | 40.0% |
| !! | CTGACATTGACTCGTATGTT+AGG | - | chr8.4:242198-242217 | None:intergenic | 40.0% |
| !! | CTGTGGTTTTGCTTCAAGAT+TGG | + | chr8.4:242632-242651 | MS.gene43479:intron | 40.0% |
| !! | TGAATTGGCCTTATGTTAGC+GGG | - | chr8.4:241499-241518 | None:intergenic | 40.0% |
| !! | TTTATAGTGATGATGGGGAG+TGG | + | chr8.4:240385-240404 | MS.gene43479:CDS | 40.0% |
| AACACCCACCCACAATAAAC+TGG | + | chr8.4:240215-240234 | MS.gene43479:CDS | 45.0% | |
| ACCTTTCCTTGAGGATCATC+AGG | - | chr8.4:242698-242717 | None:intergenic | 45.0% | |
| AGGACTAGGATTGCATCAAG+TGG | - | chr8.4:240504-240523 | None:intergenic | 45.0% | |
| AGGTAGATCCCGCTAACATA+AGG | + | chr8.4:241488-241507 | MS.gene43479:intron | 45.0% | |
| AGTTGCTGAAGCTACAAAGC+AGG | + | chr8.4:241555-241574 | MS.gene43479:CDS | 45.0% | |
| AGTTTATTGTGGGTGGGTGT+TGG | - | chr8.4:240216-240235 | None:intergenic | 45.0% | |
| CAAACGGAAAATTGCGCAAG+CGG | + | chr8.4:241582-241601 | MS.gene43479:CDS | 45.0% | |
| CATTCTGTTGATGCTGAGTG+AGG | - | chr8.4:241128-241147 | None:intergenic | 45.0% | |
| CCCTTGAATCGGTTGTAAGT+TGG | + | chr8.4:242427-242446 | MS.gene43479:intron | 45.0% | |
| CTTCAGTCAAAGCAATGACC+TGG | - | chr8.4:240143-240162 | None:intergenic | 45.0% | |
| GATGATCCTCAAGGAAAGGT+TGG | + | chr8.4:242698-242717 | MS.gene43479:CDS | 45.0% | |
| GATGGTCAAAGTGGGTATGA+AGG | - | chr8.4:240329-240348 | None:intergenic | 45.0% | |
| GCAATGATACTTCTCTCCTG+TGG | - | chr8.4:242293-242312 | None:intergenic | 45.0% | |
| GGAATCACTTTATCCTAGGG+AGG | + | chr8.4:240965-240984 | MS.gene43479:intron | 45.0% | |
| GTGTTCTGTACTCCTTAGAG+AGG | + | chr8.4:241293-241312 | MS.gene43479:intron | 45.0% | |
| TAGGGTTAGGGTTAGGGTTA+GGG | + | chr8.4:239595-239614 | MS.gene43479:intron | 45.0% | |
| TCCTGATGATCCTCAAGGAA+AGG | + | chr8.4:242694-242713 | MS.gene43479:CDS | 45.0% | |
| TTAGGGTTAGGGTTAGGGTT+AGG | + | chr8.4:239594-239613 | MS.gene43479:intron | 45.0% | |
| !! | AGATTGGTTTCTTCTCGGGA+AGG | + | chr8.4:242648-242667 | MS.gene43479:intron | 45.0% |
| !! | ATTTGGTGTGTAAGCCTCGA+CGG | - | chr8.4:240421-240440 | None:intergenic | 45.0% |
| !! | TTGCTTTTCCCTTGGTTGTC+TGG | - | chr8.4:242016-242035 | None:intergenic | 45.0% |
| ACACAACTCACCACATCCTC+AGG | - | chr8.4:241667-241686 | None:intergenic | 50.0% | |
| ACTCGCTCAGCTTCAACCAA+AGG | - | chr8.4:241538-241557 | None:intergenic | 50.0% | |
| ACTTGGAAGTAAGCCTCCCT+AGG | - | chr8.4:240981-241000 | None:intergenic | 50.0% | |
| CACAACTCACCACATCCTCA+GGG | - | chr8.4:241666-241685 | None:intergenic | 50.0% | |
| CAGCAGTTCCAGACAACCAA+GGG | + | chr8.4:242005-242024 | MS.gene43479:CDS | 50.0% | |
| GATGTAATGCAGGGCTCCAT+AGG | - | chr8.4:240524-240543 | None:intergenic | 50.0% | |
| GGCTCTATACGAAGCTTTGC+AGG | - | chr8.4:241637-241656 | None:intergenic | 50.0% | |
| GTCACACCAACCTTTCCTTG+AGG | - | chr8.4:242707-242726 | None:intergenic | 50.0% | |
| GTCGAGGCTTACACACCAAA+TGG | + | chr8.4:240420-240439 | MS.gene43479:CDS | 50.0% | |
| GTTGGAGATTGGGTGGAAGT+GGG | - | chr8.4:240198-240217 | None:intergenic | 50.0% | |
| TGCACTCATGGCTCATGTCA+TGG | - | chr8.4:240786-240805 | None:intergenic | 50.0% | |
| TGTTGGAGATTGGGTGGAAG+TGG | - | chr8.4:240199-240218 | None:intergenic | 50.0% | |
| !! | AAGGTTGGTGTGACTGGAAG+TGG | + | chr8.4:242713-242732 | MS.gene43479:CDS | 50.0% |
| !! | AGGTTGGTGTGACTGGAAGT+GGG | + | chr8.4:242714-242733 | MS.gene43479:CDS | 50.0% |
| !! | CAAGGAAAGGTTGGTGTGAC+TGG | + | chr8.4:242707-242726 | MS.gene43479:CDS | 50.0% |
| !! | TCTATCTCATGGCGGACATC+AGG | - | chr8.4:239959-239978 | None:intergenic | 50.0% |
| ACCACATCCTCAGGGTCATC+GGG | - | chr8.4:241658-241677 | None:intergenic | 55.0% | |
| ATGCAGGGCTCCATAGGACT+AGG | - | chr8.4:240518-240537 | None:intergenic | 55.0% | |
| CACCACATCCTCAGGGTCAT+CGG | - | chr8.4:241659-241678 | None:intergenic | 55.0% | |
| CATGGAAAGAGAGCTCTCCG+AGG | + | chr8.4:239715-239734 | MS.gene43479:CDS | 55.0% | |
| GCAGCAGTTCCAGACAACCA+AGG | + | chr8.4:242004-242023 | MS.gene43479:CDS | 55.0% | |
| GGTGTGACTGGAAGTGGGAA+AGG | + | chr8.4:242719-242738 | MS.gene43479:CDS | 55.0% | |
| GTGGTATGATGCAACCGTCG+AGG | + | chr8.4:240404-240423 | MS.gene43479:CDS | 55.0% | |
| TATAGAGCCCGATGACCCTG+AGG | + | chr8.4:241648-241667 | MS.gene43479:CDS | 55.0% | |
| TCCTGTTGGCACCAGAGTTC+AGG | + | chr8.4:240359-240378 | MS.gene43479:CDS | 55.0% | |
| !! | GTGGGTGGGTGTTGGAGATT+GGG | - | chr8.4:240208-240227 | None:intergenic | 55.0% |
| !! | TGTGGGTGGGTGTTGGAGAT+TGG | - | chr8.4:240209-240228 | None:intergenic | 55.0% |
| ! | GCCTGAACTCTGGTGCCAAC+AGG | - | chr8.4:240363-240382 | None:intergenic | 60.0% |
| !! | CTCATGGCGGACATCAGGAC+AGG | - | chr8.4:239954-239973 | None:intergenic | 60.0% |
| !! | GGTGGGTGTTGGAGATTGGG+TGG | - | chr8.4:240205-240224 | None:intergenic | 60.0% |
| GCCCGATGACCCTGAGGATG+TGG | + | chr8.4:241654-241673 | MS.gene43479:CDS | 65.0% | |
| GGCGGACATCAGGACAGGAC+AGG | - | chr8.4:239949-239968 | None:intergenic | 65.0% | |
| !! | GCAAGGTGGTAGCGGGCGTG+AGG | + | chr8.4:239478-239497 | MS.gene43479:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 239476 | 242811 | 239476 | ID=MS.gene43479 |
| chr8.4 | mRNA | 239476 | 242811 | 239476 | ID=MS.gene43479.t1;Parent=MS.gene43479 |
| chr8.4 | exon | 239476 | 239571 | 239476 | ID=MS.gene43479.t1.exon1;Parent=MS.gene43479.t1 |
| chr8.4 | CDS | 239476 | 239571 | 239476 | ID=cds.MS.gene43479.t1;Parent=MS.gene43479.t1 |
| chr8.4 | exon | 239668 | 239736 | 239668 | ID=MS.gene43479.t1.exon2;Parent=MS.gene43479.t1 |
| chr8.4 | CDS | 239668 | 239736 | 239668 | ID=cds.MS.gene43479.t1;Parent=MS.gene43479.t1 |
| chr8.4 | exon | 240144 | 240236 | 240144 | ID=MS.gene43479.t1.exon3;Parent=MS.gene43479.t1 |
| chr8.4 | CDS | 240144 | 240236 | 240144 | ID=cds.MS.gene43479.t1;Parent=MS.gene43479.t1 |
| chr8.4 | exon | 240324 | 240482 | 240324 | ID=MS.gene43479.t1.exon4;Parent=MS.gene43479.t1 |
| chr8.4 | CDS | 240324 | 240482 | 240324 | ID=cds.MS.gene43479.t1;Parent=MS.gene43479.t1 |
| chr8.4 | exon | 241490 | 241675 | 241490 | ID=MS.gene43479.t1.exon5;Parent=MS.gene43479.t1 |
| chr8.4 | CDS | 241490 | 241675 | 241490 | ID=cds.MS.gene43479.t1;Parent=MS.gene43479.t1 |
| chr8.4 | exon | 241912 | 242040 | 241912 | ID=MS.gene43479.t1.exon6;Parent=MS.gene43479.t1 |
| chr8.4 | CDS | 241912 | 242040 | 241912 | ID=cds.MS.gene43479.t1;Parent=MS.gene43479.t1 |
| chr8.4 | exon | 242650 | 242811 | 242650 | ID=MS.gene43479.t1.exon7;Parent=MS.gene43479.t1 |
| chr8.4 | CDS | 242650 | 242811 | 242650 | ID=cds.MS.gene43479.t1;Parent=MS.gene43479.t1 |
| Gene Sequence |
| Protein sequence |
