Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43636.t1 | XP_003615412.1 | 98.7 | 541 | 7 | 0 | 1 | 541 | 1 | 541 | 3.4e-309 | 1070.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43636.t1 | Q8BKU8 | 38.3 | 274 | 160 | 3 | 220 | 490 | 206 | 473 | 1.7e-46 | 188.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43636.t1 | G7K640 | 98.7 | 541 | 7 | 0 | 1 | 541 | 1 | 541 | 2.4e-309 | 1070.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050084 | MS.gene43636 | 0.804629 | 1.97E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene43636 | 0.811618 | 6.40E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43636.t1 | MTR_5g067670 | 98.706 | 541 | 7 | 0 | 1 | 541 | 1 | 541 | 0.0 | 1107 |
| MS.gene43636.t1 | MTR_8g005790 | 63.867 | 512 | 155 | 8 | 37 | 541 | 26 | 514 | 0.0 | 627 |
| MS.gene43636.t1 | MTR_2g007740 | 52.381 | 483 | 221 | 4 | 39 | 519 | 23 | 498 | 1.75e-174 | 503 |
| MS.gene43636.t1 | MTR_8g005485 | 57.556 | 450 | 134 | 6 | 37 | 479 | 26 | 425 | 1.60e-171 | 492 |
| MS.gene43636.t1 | MTR_8g021310 | 50.198 | 506 | 229 | 7 | 39 | 541 | 20 | 505 | 7.84e-170 | 490 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43636.t1 | AT1G61670 | 63.760 | 516 | 169 | 2 | 28 | 541 | 14 | 513 | 0.0 | 668 |
| MS.gene43636.t1 | AT1G61670 | 63.760 | 516 | 169 | 2 | 28 | 541 | 14 | 513 | 0.0 | 668 |
| MS.gene43636.t1 | AT1G72480 | 48.833 | 514 | 233 | 6 | 37 | 541 | 17 | 509 | 9.13e-176 | 506 |
| MS.gene43636.t1 | AT2G01070 | 48.915 | 507 | 224 | 6 | 36 | 541 | 24 | 496 | 6.49e-169 | 488 |
| MS.gene43636.t1 | AT2G01070 | 51.454 | 447 | 197 | 3 | 36 | 481 | 24 | 451 | 4.52e-160 | 464 |
| MS.gene43636.t1 | AT1G10980 | 48.164 | 463 | 228 | 7 | 25 | 480 | 8 | 465 | 4.56e-143 | 422 |
Find 137 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTGGTTTGTAAAATAT+TGG | 0.173630 | 5.1:-52431137 | MS.gene43636:CDS |
| CATGGGCCATCCCAGCTTTC+TGG | 0.177151 | 5.1:-52429622 | MS.gene43636:CDS |
| TACCACATTACTGCTGTTAT+TGG | 0.195867 | 5.1:-52431093 | MS.gene43636:CDS |
| GCTACAGATCATCATGTATT+TGG | 0.203519 | 5.1:-52428599 | MS.gene43636:CDS |
| TGGATGCTTGCTTTATTCTT+TGG | 0.221752 | 5.1:-52430750 | MS.gene43636:CDS |
| CGGTGCTGCTTTCAGTATTA+TGG | 0.231839 | 5.1:-52429895 | MS.gene43636:CDS |
| GCTAATTCGTTCTTCTTTCA+TGG | 0.239083 | 5.1:-52432849 | MS.gene43636:CDS |
| TCAATGCATCAGACCCTTTA+GGG | 0.251565 | 5.1:-52429661 | MS.gene43636:CDS |
| CTGAAGGACACGGTGATTTC+CGG | 0.295351 | 5.1:-52431270 | MS.gene43636:CDS |
| TTGGTCTTGTTTGGTTTCTC+TGG | 0.298282 | 5.1:-52431152 | MS.gene43636:CDS |
| GGTTGAAGCTATAATAATTA+AGG | 0.299082 | 5.1:-52431547 | MS.gene43636:CDS |
| AAAGAAGGTTCTTGTAAGTT+AGG | 0.306234 | 5.1:-52431453 | MS.gene43636:CDS |
| TGATAGTGATCTGCATTCTC+TGG | 0.310427 | 5.1:-52429577 | MS.gene43636:CDS |
| AGTGTCACGGCTTCTTCTTT+TGG | 0.318968 | 5.1:-52430953 | MS.gene43636:CDS |
| TTCAATGCATCAGACCCTTT+AGG | 0.333666 | 5.1:-52429662 | MS.gene43636:CDS |
| TTCGGACCGTTCGGTTCATC+AGG | 0.347382 | 5.1:+52431408 | None:intergenic |
| GGCCAATGGTAATTACAGTA+TGG | 0.360279 | 5.1:-52431005 | MS.gene43636:CDS |
| ATTTCTCCACACAGTTCTTC+CGG | 0.368453 | 5.1:+52431251 | None:intergenic |
| CATCAATGGCATCATCTTCC+CGG | 0.370437 | 5.1:+52431212 | None:intergenic |
| ACCTGGTTGGATTTCGAGAT+GGG | 0.379982 | 5.1:+52429552 | None:intergenic |
| AGAGAATGGTTAAACTCAAT+AGG | 0.383411 | 5.1:+52432798 | None:intergenic |
| GGTGCTGCCTGTGGCTCTGT+TGG | 0.391425 | 5.1:-52430770 | MS.gene43636:CDS |
| TAAAACCCTTGAGAAGCTTC+AGG | 0.396513 | 5.1:-52430710 | MS.gene43636:intron |
| ACTGTTGATATTAATAGTAC+TGG | 0.400431 | 5.1:-52431330 | MS.gene43636:CDS |
| CTGCTTTCAGTATTATGGAT+TGG | 0.401567 | 5.1:-52429890 | MS.gene43636:CDS |
| TTCTTTCATGGTGGTAGTGA+AGG | 0.416769 | 5.1:-52432837 | MS.gene43636:CDS |
| CAAGCATCCAACAGAGCCAC+AGG | 0.424636 | 5.1:+52430763 | None:intergenic |
| GGTAATATTAATGACTTCTC+TGG | 0.426380 | 5.1:-52430811 | MS.gene43636:CDS |
| TTGGTGGTTTCTATGGGCTA+TGG | 0.429923 | 5.1:-52430934 | MS.gene43636:CDS |
| GACAAAAGAATCTGCTCAAA+AGG | 0.430551 | 5.1:-52431598 | MS.gene43636:CDS |
| CCACTGGTAAATCTTTCATC+AGG | 0.431066 | 5.1:-52432764 | MS.gene43636:intron |
| AGAGAATGCAGATCACTATC+AGG | 0.431075 | 5.1:+52429579 | None:intergenic |
| ATCACCGTGTCCTTCAGTTC+AGG | 0.431143 | 5.1:+52431276 | None:intergenic |
| TAAGAGACAGGAATAACATT+GGG | 0.447971 | 5.1:-52431524 | MS.gene43636:CDS |
| ATTACTGCTGTTATTGGCCT+AGG | 0.448078 | 5.1:-52431087 | MS.gene43636:CDS |
| GACGGATGAACGTTTCGTTT+TGG | 0.449993 | 5.1:+52432874 | None:intergenic |
| TGCAAGCGTTTCGGACCGTT+CGG | 0.453775 | 5.1:+52431399 | None:intergenic |
| GAGGAAGCTGTCGCAGTTGT+TGG | 0.456260 | 5.1:-52428698 | MS.gene43636:CDS |
| GTCTACCATGCTAGAAAGAA+AGG | 0.461091 | 5.1:-52428648 | MS.gene43636:CDS |
| GCAAGCAAAGTCCAGAAAGC+TGG | 0.461992 | 5.1:+52429611 | None:intergenic |
| ACGGCGATCGCCGCCGTGAT+CGG | 0.464824 | 5.1:+52432995 | None:intergenic |
| AGATTGAAGAGGGATGGTTC+CGG | 0.467396 | 5.1:+52432964 | None:intergenic |
| CTGGAAAACTTGAGTTGTAC+AGG | 0.471854 | 5.1:-52429943 | MS.gene43636:CDS |
| ATTTCAATTCGACGGGAAGC+AGG | 0.472735 | 5.1:-52431026 | MS.gene43636:CDS |
| AAGAACTGTGTGGAGAAATC+CGG | 0.475723 | 5.1:-52431247 | MS.gene43636:CDS |
| TACAAATTCTCTTGCAGTGA+CGG | 0.475960 | 5.1:-52429915 | MS.gene43636:CDS |
| GAACCTTCTTTAGCAAGCTC+TGG | 0.476728 | 5.1:+52431465 | None:intergenic |
| AGTTCAATGCAACAAAAGAC+AGG | 0.479559 | 5.1:-52431573 | MS.gene43636:CDS |
| CTTCGCCACAGTTCCCCTAA+AGG | 0.480015 | 5.1:+52429647 | None:intergenic |
| ACAGAGCCACAGGCAGCACC+AGG | 0.482328 | 5.1:+52430773 | None:intergenic |
| TTCGCCACAGTTCCCCTAAA+GGG | 0.485271 | 5.1:+52429648 | None:intergenic |
| TCTATCCTTTCTTTCTAGCA+TGG | 0.494278 | 5.1:+52428643 | None:intergenic |
| GATAGTGATCTGCATTCTCT+GGG | 0.497470 | 5.1:-52429576 | MS.gene43636:CDS |
| GTATGCAAATTTCAATTCGA+CGG | 0.499121 | 5.1:-52431034 | MS.gene43636:CDS |
| TATGCAAATTTCAATTCGAC+GGG | 0.499350 | 5.1:-52431033 | MS.gene43636:CDS |
| GGAAGTGGAGTTAAGATGTC+TGG | 0.500442 | 5.1:-52428677 | MS.gene43636:CDS |
| AGTATTATGGATTGGCTATG+AGG | 0.500670 | 5.1:-52429882 | MS.gene43636:intron |
| GCTGTCGCAGTTGTTGGAAG+TGG | 0.500683 | 5.1:-52428692 | MS.gene43636:CDS |
| GCACAGATTAGGAAAAGTAC+TGG | 0.502612 | 5.1:-52429962 | MS.gene43636:intron |
| GCTAGAAAGAAAGGATAGAA+AGG | 0.511597 | 5.1:-52428639 | MS.gene43636:CDS |
| CCCCATCTCGAAATCCAACC+AGG | 0.512950 | 5.1:-52429553 | MS.gene43636:intron |
| TCGAATGGAAAGTGAGGTAG+AGG | 0.513521 | 5.1:+52432931 | None:intergenic |
| GGCCTCGGAAGCACTTGAAC+TGG | 0.515004 | 5.1:-52430845 | MS.gene43636:CDS |
| TGGCCTAGGCATGTGTGAAA+TGG | 0.515894 | 5.1:-52431073 | MS.gene43636:CDS |
| TGGGAAAATTATCAAGAGAA+TGG | 0.517372 | 5.1:+52432784 | None:intergenic |
| GATGGTTCCGGCGACGGTGA+CGG | 0.522120 | 5.1:+52432976 | None:intergenic |
| TATTCGTACTCGGAAGAGAC+GGG | 0.523108 | 5.1:-52428734 | MS.gene43636:CDS |
| GGAACTGTGGCGAAGAGCAT+GGG | 0.523153 | 5.1:-52429639 | MS.gene43636:CDS |
| GTATTCGTACTCGGAAGAGA+CGG | 0.524880 | 5.1:-52428735 | MS.gene43636:CDS |
| AAGAGGGATGGTTCCGGCGA+CGG | 0.529716 | 5.1:+52432970 | None:intergenic |
| GCGATCGCCGTCACCGTCGC+CGG | 0.532174 | 5.1:-52432983 | MS.gene43636:CDS |
| TACCTGGTTGGATTTCGAGA+TGG | 0.533963 | 5.1:+52429551 | None:intergenic |
| GGGAACTGTGGCGAAGAGCA+TGG | 0.540024 | 5.1:-52429640 | MS.gene43636:CDS |
| GAAAACGGCGGAGATTGAAG+AGG | 0.545213 | 5.1:+52432953 | None:intergenic |
| TCGGTTCATCAGGGTTCTCA+CGG | 0.546433 | 5.1:+52431418 | None:intergenic |
| CTGTTGATATTAATAGTACT+GGG | 0.548195 | 5.1:-52431329 | MS.gene43636:CDS |
| GCCCATACTGTAATTACCAT+TGG | 0.550436 | 5.1:+52431003 | None:intergenic |
| AGGTTCTTGTAAGTTAGGAG+AGG | 0.550669 | 5.1:-52431448 | MS.gene43636:CDS |
| TGGAGTTATTGAAGATCTAG+AGG | 0.550890 | 5.1:-52428579 | MS.gene43636:CDS |
| CACCAGTTCAAGTGCTTCCG+AGG | 0.550906 | 5.1:+52430843 | None:intergenic |
| CAAGCAAAGTCCAGAAAGCT+GGG | 0.551328 | 5.1:+52429612 | None:intergenic |
| GCCAATGGTAATTACAGTAT+GGG | 0.552364 | 5.1:-52431004 | MS.gene43636:CDS |
| GAAAGTGAGGTAGAGGAAAA+CGG | 0.556560 | 5.1:+52432938 | None:intergenic |
| AGGTTACCTGAAGCTTCTCA+AGG | 0.556720 | 5.1:+52430704 | None:intergenic |
| ATCAATGGCATCATCTTCCC+GGG | 0.559481 | 5.1:+52431213 | None:intergenic |
| ACACCAGAGCTTGCTAAAGA+AGG | 0.560824 | 5.1:-52431468 | MS.gene43636:CDS |
| TTCCCGGGTAGATAACCATC+CGG | 0.562386 | 5.1:+52431228 | None:intergenic |
| TAATAATTAAGGTAAGAGAC+AGG | 0.567678 | 5.1:-52431536 | MS.gene43636:CDS |
| GTAAGAGACAGGAATAACAT+TGG | 0.570420 | 5.1:-52431525 | MS.gene43636:CDS |
| GGAGTAGTCCGTCCAACACT+TGG | 0.570770 | 5.1:-52430913 | MS.gene43636:CDS |
| CAAAGTCCAGAAAGCTGGGA+TGG | 0.571674 | 5.1:+52429616 | None:intergenic |
| AATCCGGATGGTTATCTACC+CGG | 0.573565 | 5.1:-52431231 | MS.gene43636:CDS |
| CATTCGATCATCACCCTCGT+CGG | 0.573756 | 5.1:-52432915 | MS.gene43636:CDS |
| ATCCGGATGGTTATCTACCC+GGG | 0.578131 | 5.1:-52431230 | MS.gene43636:CDS |
| CTTGAACTGGTGGAACATCT+CGG | 0.581900 | 5.1:-52430832 | MS.gene43636:CDS |
| TCGGACCGTTCGGTTCATCA+GGG | 0.583365 | 5.1:+52431409 | None:intergenic |
| CTGATGAAAGATTTACCAGT+GGG | 0.583949 | 5.1:+52432765 | None:intergenic |
| AGATCTAGAGGAAGACAAGA+GGG | 0.585180 | 5.1:-52428567 | MS.gene43636:CDS |
| CGACGAGGGTGATGATCGAA+TGG | 0.587387 | 5.1:+52432916 | None:intergenic |
| TTGAGTCTATCAACTTTCGA+AGG | 0.588485 | 5.1:-52431620 | MS.gene43636:CDS |
| GAGCCATTTCACACATGCCT+AGG | 0.590478 | 5.1:+52431070 | None:intergenic |
| GAGGTTAGACCACCAAGTGT+TGG | 0.595310 | 5.1:+52430901 | None:intergenic |
| ACAATGTCTTACACCGATCA+CGG | 0.597001 | 5.1:-52433008 | MS.gene43636:CDS |
| CGGCGGAGATTGAAGAGGGA+TGG | 0.599884 | 5.1:+52432958 | None:intergenic |
| GTAGTCCGTCCAACACTTGG+TGG | 0.600181 | 5.1:-52430910 | MS.gene43636:CDS |
| AAAGATAGACTATACCTGGT+TGG | 0.603212 | 5.1:+52429539 | None:intergenic |
| GCGTCGTAGGTATTCGTACT+CGG | 0.603814 | 5.1:-52428744 | MS.gene43636:intron |
| CTCGGAAGCACTTGAACTGG+TGG | 0.606410 | 5.1:-52430842 | MS.gene43636:CDS |
| AATGCAACAAAAGACAGGGT+TGG | 0.612370 | 5.1:-52431568 | MS.gene43636:CDS |
| AAGATCTAGAGGAAGACAAG+AGG | 0.616120 | 5.1:-52428568 | MS.gene43636:CDS |
| GGCCAATAACAGCAGTAATG+TGG | 0.616874 | 5.1:+52431091 | None:intergenic |
| GGTTACCTGAAGCTTCTCAA+GGG | 0.620369 | 5.1:+52430705 | None:intergenic |
| TTCGACGGGAAGCAGGCCAA+TGG | 0.626292 | 5.1:-52431019 | MS.gene43636:CDS |
| AAAACGGCGGAGATTGAAGA+GGG | 0.634763 | 5.1:+52432954 | None:intergenic |
| TTAGACCACCAAGTGTTGGA+CGG | 0.634906 | 5.1:+52430905 | None:intergenic |
| TGATGATCGAATGGAAAGTG+AGG | 0.637550 | 5.1:+52432925 | None:intergenic |
| AATTCGTTCTTCTTTCATGG+TGG | 0.650170 | 5.1:-52432846 | MS.gene43636:CDS |
| CAATGCATCAGACCCTTTAG+GGG | 0.650184 | 5.1:-52429660 | MS.gene43636:CDS |
| CGTGAATGGAAGCACCGACG+AGG | 0.655228 | 5.1:+52432901 | None:intergenic |
| AAGAGACAGGAATAACATTG+GGG | 0.656731 | 5.1:-52431523 | MS.gene43636:CDS |
| CCTGGTTGGATTTCGAGATG+GGG | 0.662189 | 5.1:+52429553 | None:intergenic |
| CTGTCAAGAAGACAGTGTCA+CGG | 0.669781 | 5.1:-52430966 | MS.gene43636:CDS |
| CTTGACAGCAGTGAAAGTCA+CGG | 0.674323 | 5.1:+52430981 | None:intergenic |
| GTGAATGGAAGCACCGACGA+GGG | 0.675589 | 5.1:+52432902 | None:intergenic |
| GCATGTGTGAAATGGCTCTG+TGG | 0.681333 | 5.1:-52431065 | MS.gene43636:CDS |
| CAGACCCTTTAGGGGAACTG+TGG | 0.683354 | 5.1:-52429652 | MS.gene43636:CDS |
| GTTCAATGCAACAAAAGACA+GGG | 0.693398 | 5.1:-52431572 | MS.gene43636:CDS |
| CCTGATGAAAGATTTACCAG+TGG | 0.695106 | 5.1:+52432764 | None:intergenic |
| ACAAAATGAAGAGACTAACA+TGG | 0.708836 | 5.1:-52431361 | MS.gene43636:CDS |
| ACTGTGTGGAGAAATCCGGA+TGG | 0.728838 | 5.1:-52431243 | MS.gene43636:CDS |
| TGATTTCCGGAAGAACTGTG+TGG | 0.738733 | 5.1:-52431257 | MS.gene43636:CDS |
| GAGAACCCTGATGAACCGAA+CGG | 0.742050 | 5.1:-52431414 | MS.gene43636:CDS |
| TGATCCTGAACTGAAGGACA+CGG | 0.757055 | 5.1:-52431280 | MS.gene43636:CDS |
| AGAAGAACGAATTAGCACGA+CGG | 0.762581 | 5.1:+52432856 | None:intergenic |
| AGAGACAGGAATAACATTGG+GGG | 0.766545 | 5.1:-52431522 | MS.gene43636:CDS |
| ATGTCTTACACCGATCACGG+CGG | 0.778979 | 5.1:-52433005 | MS.gene43636:CDS |
| AGTGAGGTAGAGGAAAACGG+CGG | 0.780726 | 5.1:+52432941 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAAAACATAAATAATAA+TGG | - | chr5.1:52432071-52432090 | MS.gene43636:intron | 10.0% |
| !!! | TTTTCAATATAATAATTGAA+GGG | + | chr5.1:52432195-52432214 | None:intergenic | 10.0% |
| !!! | TTTTTCAATATAATAATTGA+AGG | + | chr5.1:52432196-52432215 | None:intergenic | 10.0% |
| !! | AATAGTTGTGTAAATTATAA+TGG | - | chr5.1:52429190-52429209 | MS.gene43636:intron | 15.0% |
| !! | AATATGTTAATGTTAATGTT+AGG | - | chr5.1:52429923-52429942 | MS.gene43636:CDS | 15.0% |
| !! | ATAAAATAATTAAGTATAGC+AGG | - | chr5.1:52429564-52429583 | MS.gene43636:CDS | 15.0% |
| !! | ATAGAAATAGTTTATGTTAT+TGG | + | chr5.1:52431139-52431158 | None:intergenic | 15.0% |
| !! | ATATTGAAAAAAAATTGACT+TGG | - | chr5.1:52432205-52432224 | MS.gene43636:intron | 15.0% |
| !! | GAAATGAAAAAAAACAAATT+GGG | - | chr5.1:52428912-52428931 | MS.gene43636:intron | 15.0% |
| !! | TAAAATAATTAAGTATAGCA+GGG | - | chr5.1:52429565-52429584 | MS.gene43636:CDS | 15.0% |
| !! | TGAAATGAAAAAAAACAAAT+TGG | - | chr5.1:52428911-52428930 | MS.gene43636:intron | 15.0% |
| !!! | TATTTATGTTTTTTACTTCA+CGG | + | chr5.1:52432067-52432086 | None:intergenic | 15.0% |
| !!! | TTTGATCTGTTTTTTTTTTT+TGG | - | chr5.1:52428884-52428903 | MS.gene43636:intron | 15.0% |
| !! | AAAAACCAATAACTTAAGAA+TGG | - | chr5.1:52431441-52431460 | MS.gene43636:CDS | 20.0% |
| !! | AAAATAATTAAGTATAGCAG+GGG | - | chr5.1:52429566-52429585 | MS.gene43636:CDS | 20.0% |
| !! | ACATAATTCAGTGTAATTAT+AGG | - | chr5.1:52429361-52429380 | MS.gene43636:intron | 20.0% |
| !! | ATAGTTGATCAAATATGATA+TGG | - | chr5.1:52429879-52429898 | MS.gene43636:intron | 20.0% |
| !! | ATCAAATCAAATACTGAAAA+CGG | + | chr5.1:52428870-52428889 | None:intergenic | 20.0% |
| !!! | AATCAGCTAATTTTTCAATT+TGG | + | chr5.1:52432759-52432778 | None:intergenic | 20.0% |
| !!! | AATGTGTTGATTTGTTTATT+TGG | - | chr5.1:52429026-52429045 | MS.gene43636:intron | 20.0% |
| !!! | AATTCTAGAAATTCATATAC+TGG | + | chr5.1:52430995-52431014 | None:intergenic | 20.0% |
| !!! | AGTATATGAATTTCTAGAAT+TGG | - | chr5.1:52430994-52431013 | MS.gene43636:CDS | 20.0% |
| !!! | ATAATTACATACCTCTTTTT+TGG | + | chr5.1:52432269-52432288 | None:intergenic | 20.0% |
| !!! | TAATTACATACCTCTTTTTT+GGG | + | chr5.1:52432268-52432287 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAC+CGG | + | chr5.1:52429342-52429361 | None:intergenic | 20.0% |
| ! | AAACCATAAAAAGTCATCAA+TGG | + | chr5.1:52430372-52430391 | None:intergenic | 25.0% |
| ! | AAGTTATACCTGATTTAAGA+GGG | + | chr5.1:52431528-52431547 | None:intergenic | 25.0% |
| ! | AATGAAGAATACATTTCTGT+AGG | + | chr5.1:52431813-52431832 | None:intergenic | 25.0% |
| ! | ACTGTTGATATTAATAGTAC+TGG | - | chr5.1:52430237-52430256 | MS.gene43636:intron | 25.0% |
| ! | ATTGATTATATGCACAGATT+AGG | - | chr5.1:52431594-52431613 | MS.gene43636:CDS | 25.0% |
| ! | CTGTTGATATTAATAGTACT+GGG | - | chr5.1:52430238-52430257 | MS.gene43636:intron | 25.0% |
| ! | GCATAACAAAGGAAAAAATA+AGG | - | chr5.1:52431083-52431102 | MS.gene43636:CDS | 25.0% |
| ! | GGTTGAAGCTATAATAATTA+AGG | - | chr5.1:52430020-52430039 | MS.gene43636:intron | 25.0% |
| ! | GTATTATTACTGCATAACAA+AGG | - | chr5.1:52431072-52431091 | MS.gene43636:CDS | 25.0% |
| ! | GTTATGCAGTAATAATACTT+TGG | + | chr5.1:52431070-52431089 | None:intergenic | 25.0% |
| ! | TAATAATTAAGGTAAGAGAC+AGG | - | chr5.1:52430031-52430050 | MS.gene43636:intron | 25.0% |
| ! | TATCTCTATAAAGAACAGAA+AGG | + | chr5.1:52429709-52429728 | None:intergenic | 25.0% |
| ! | TATTGTCTATACACAAGAAA+AGG | + | chr5.1:52429665-52429684 | None:intergenic | 25.0% |
| ! | TCATTATCAATATGAGACAA+AGG | + | chr5.1:52429111-52429130 | None:intergenic | 25.0% |
| ! | TGTTCTTTATAGAGATAACT+TGG | - | chr5.1:52429712-52429731 | MS.gene43636:intron | 25.0% |
| !! | AACTAAGATCATTGTTTTCT+TGG | - | chr5.1:52431475-52431494 | MS.gene43636:CDS | 25.0% |
| !! | TAGTCGAATTTTACTTGTTT+GGG | + | chr5.1:52431753-52431772 | None:intergenic | 25.0% |
| !! | TTCTCTGGTTTGTAAAATAT+TGG | - | chr5.1:52430430-52430449 | MS.gene43636:intron | 25.0% |
| !! | TTTTTATGGTTTGATGTCTT+TGG | - | chr5.1:52430380-52430399 | MS.gene43636:intron | 25.0% |
| !!! | AAGCATTTTTGAAACTGTTT+GGG | + | chr5.1:52431318-52431337 | None:intergenic | 25.0% |
| !!! | TAACTTGCATTTTAGTTTCT+TGG | - | chr5.1:52431542-52431561 | MS.gene43636:CDS | 25.0% |
| !!! | TAAGCATTTTTGAAACTGTT+TGG | + | chr5.1:52431319-52431338 | None:intergenic | 25.0% |
| AAACCGTTCATAATCAATCT+TGG | - | chr5.1:52432169-52432188 | MS.gene43636:intron | 30.0% | |
| AAAGAAGGTTCTTGTAAGTT+AGG | - | chr5.1:52430114-52430133 | MS.gene43636:intron | 30.0% | |
| AACAAATCGCAATTACACTA+TGG | + | chr5.1:52432425-52432444 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACAGCTTA+CGG | - | chr5.1:52431263-52431282 | MS.gene43636:CDS | 30.0% | |
| ACAAAATGAAGAGACTAACA+TGG | - | chr5.1:52430206-52430225 | MS.gene43636:intron | 30.0% | |
| AGAGAATGGTTAAACTCAAT+AGG | + | chr5.1:52428772-52428791 | None:intergenic | 30.0% | |
| AGTTATACCTGATTTAAGAG+GGG | + | chr5.1:52431527-52431546 | None:intergenic | 30.0% | |
| ATAAACAACTTTGAATTCCC+AGG | + | chr5.1:52429260-52429279 | None:intergenic | 30.0% | |
| ATAGACAAAACCAGTAAAAC+CGG | - | chr5.1:52429789-52429808 | MS.gene43636:intron | 30.0% | |
| ATAGAGATAACTTGGTTGAT+AGG | - | chr5.1:52429720-52429739 | MS.gene43636:intron | 30.0% | |
| ATCTTCTATCTGTAAACATG+CGG | + | chr5.1:52429838-52429857 | None:intergenic | 30.0% | |
| CAAGTTATACCTGATTTAAG+AGG | + | chr5.1:52431529-52431548 | None:intergenic | 30.0% | |
| CTTGATTGATACACTAACAT+AGG | - | chr5.1:52432782-52432801 | MS.gene43636:CDS | 30.0% | |
| GAGAAACTTTAAACAAGTAG+GGG | - | chr5.1:52429744-52429763 | MS.gene43636:intron | 30.0% | |
| GATTAGAACAAACATCTGAT+TGG | - | chr5.1:52429591-52429610 | MS.gene43636:CDS | 30.0% | |
| GGAGAAACTTTAAACAAGTA+GGG | - | chr5.1:52429743-52429762 | MS.gene43636:intron | 30.0% | |
| GGTAATATTAATGACTTCTC+TGG | - | chr5.1:52430756-52430775 | MS.gene43636:CDS | 30.0% | |
| GTATGCAAATTTCAATTCGA+CGG | - | chr5.1:52430533-52430552 | MS.gene43636:intron | 30.0% | |
| TAAACCAAATCCCAAAAAAG+AGG | - | chr5.1:52432255-52432274 | MS.gene43636:intron | 30.0% | |
| TAAGAGACAGGAATAACATT+GGG | - | chr5.1:52430043-52430062 | MS.gene43636:intron | 30.0% | |
| TACATTTCTGTAGGTTAATC+AGG | + | chr5.1:52431804-52431823 | None:intergenic | 30.0% | |
| TATGCAAATTTCAATTCGAC+GGG | - | chr5.1:52430534-52430553 | MS.gene43636:intron | 30.0% | |
| TCAAATTAGTCAATCCAAAC+AGG | - | chr5.1:52431354-52431373 | MS.gene43636:CDS | 30.0% | |
| TCGAAAACAATAAGCAAGTA+GGG | - | chr5.1:52429631-52429650 | MS.gene43636:CDS | 30.0% | |
| TCTCACAAGTTAACAAGTAA+GGG | + | chr5.1:52430948-52430967 | None:intergenic | 30.0% | |
| TCTGACCATTCTTAAGTTAT+TGG | + | chr5.1:52431449-52431468 | None:intergenic | 30.0% | |
| TGGGAAAATTATCAAGAGAA+TGG | + | chr5.1:52428786-52428805 | None:intergenic | 30.0% | |
| TTCAGTGTAATTATAGGTGT+CGG | - | chr5.1:52429367-52429386 | MS.gene43636:intron | 30.0% | |
| TTCATGCACGGTTATAAATA+TGG | - | chr5.1:52430919-52430938 | MS.gene43636:CDS | 30.0% | |
| TTCTTGTGTATAGACAATAC+CGG | - | chr5.1:52429666-52429685 | MS.gene43636:CDS | 30.0% | |
| TTGTCTATACACAAGAGAAA+GGG | + | chr5.1:52429777-52429796 | None:intergenic | 30.0% | |
| TTTGTCTATACACAAGAGAA+AGG | + | chr5.1:52429778-52429797 | None:intergenic | 30.0% | |
| ! | ACACAAAAGCTATTTCCTAA+AGG | + | chr5.1:52431389-52431408 | None:intergenic | 30.0% |
| ! | AGTCGAATTTTACTTGTTTG+GGG | + | chr5.1:52431752-52431771 | None:intergenic | 30.0% |
| ! | CTAGTCGAATTTTACTTGTT+TGG | + | chr5.1:52431754-52431773 | None:intergenic | 30.0% |
| ! | GTTAGTTTGAATTTCATCCT+CGG | + | chr5.1:52432654-52432673 | None:intergenic | 30.0% |
| ! | TAGAGATAACTTGGTTGATA+GGG | - | chr5.1:52429721-52429740 | MS.gene43636:intron | 30.0% |
| ! | TTAGAAAGTATGATGTTCCA+AGG | - | chr5.1:52431411-52431430 | MS.gene43636:CDS | 30.0% |
| !! | ATGAATTTCTAGAATTGGCA+CGG | - | chr5.1:52430999-52431018 | MS.gene43636:CDS | 30.0% |
| !! | ATGCCATTGATGACTTTTTA+TGG | - | chr5.1:52430366-52430385 | MS.gene43636:intron | 30.0% |
| !! | GTAAGACTTTGAGATAGAAT+TGG | - | chr5.1:52429540-52429559 | MS.gene43636:intron | 30.0% |
| !! | TCTTTGGCTTATCTTTTTCT+TGG | - | chr5.1:52430396-52430415 | MS.gene43636:intron | 30.0% |
| !!! | ATCTTTTTCTTGGTCTTGTT+TGG | - | chr5.1:52430406-52430425 | MS.gene43636:intron | 30.0% |
| AAAAACGTTTGCAAGCGTTT+CGG | + | chr5.1:52430180-52430199 | None:intergenic | 35.0% | |
| AAAGATAGACTATACCTGGT+TGG | + | chr5.1:52432031-52432050 | None:intergenic | 35.0% | |
| AAAGGAATTTCAAGATACCG+AGG | - | chr5.1:52432634-52432653 | MS.gene43636:intron | 35.0% | |
| AAAGTATGATGTTCCAAGGA+AGG | - | chr5.1:52431415-52431434 | MS.gene43636:CDS | 35.0% | |
| AACATACTCCATGAGATTTG+AGG | - | chr5.1:52432671-52432690 | MS.gene43636:intron | 35.0% | |
| AAGAGACAGGAATAACATTG+GGG | - | chr5.1:52430044-52430063 | MS.gene43636:intron | 35.0% | |
| AAGTTGTTTATGTGAGTTCC+AGG | - | chr5.1:52429269-52429288 | MS.gene43636:intron | 35.0% | |
| AATACACCACACCAAAAAGA+AGG | + | chr5.1:52430698-52430717 | None:intergenic | 35.0% | |
| AATTCGTTCTTCTTTCATGG+TGG | - | chr5.1:52428721-52428740 | MS.gene43636:CDS | 35.0% | |
| AGTTCAATGCAACAAAAGAC+AGG | - | chr5.1:52429994-52430013 | MS.gene43636:intron | 35.0% | |
| ATAGACAATACCGGTAAAAC+TGG | - | chr5.1:52429675-52429694 | MS.gene43636:intron | 35.0% | |
| ATCAAACAGTTGAGGAAACT+AGG | - | chr5.1:52431777-52431796 | MS.gene43636:intron | 35.0% | |
| CAGTAAAGATAGACTATACC+TGG | + | chr5.1:52432035-52432054 | None:intergenic | 35.0% | |
| CGAAAACAATAAGCAAGTAG+GGG | - | chr5.1:52429632-52429651 | MS.gene43636:CDS | 35.0% | |
| CTAATAACTACAAGTGTCTC+AGG | - | chr5.1:52431854-52431873 | MS.gene43636:intron | 35.0% | |
| CTCGAAAACAATAAGCAAGT+AGG | - | chr5.1:52429630-52429649 | MS.gene43636:CDS | 35.0% | |
| CTCTCACAAGTTAACAAGTA+AGG | + | chr5.1:52430949-52430968 | None:intergenic | 35.0% | |
| CTGATGAAAGATTTACCAGT+GGG | + | chr5.1:52428805-52428824 | None:intergenic | 35.0% | |
| CTGCTTTCAGTATTATGGAT+TGG | - | chr5.1:52431677-52431696 | MS.gene43636:intron | 35.0% | |
| CTTATTTCCATAAGCTCTCT+AGG | + | chr5.1:52431249-52431268 | None:intergenic | 35.0% | |
| GAAAACAATAAGCAAGTAGG+GGG | - | chr5.1:52429633-52429652 | MS.gene43636:CDS | 35.0% | |
| GAAATTCCTTTGGCATATTC+TGG | + | chr5.1:52432625-52432644 | None:intergenic | 35.0% | |
| GACAAAAGAATCTGCTCAAA+AGG | - | chr5.1:52429969-52429988 | MS.gene43636:intron | 35.0% | |
| GCCAATGGTAATTACAGTAT+GGG | - | chr5.1:52430563-52430582 | MS.gene43636:intron | 35.0% | |
| GCTAATTCGTTCTTCTTTCA+TGG | - | chr5.1:52428718-52428737 | MS.gene43636:CDS | 35.0% | |
| GCTACAGATCATCATGTATT+TGG | - | chr5.1:52432968-52432987 | MS.gene43636:CDS | 35.0% | |
| GCTAGAAAGAAAGGATAGAA+AGG | - | chr5.1:52432928-52432947 | MS.gene43636:CDS | 35.0% | |
| GGGAGAAACTTTAAACAAGT+AGG | - | chr5.1:52429742-52429761 | MS.gene43636:intron | 35.0% | |
| GTAAGAGACAGGAATAACAT+TGG | - | chr5.1:52430042-52430061 | MS.gene43636:intron | 35.0% | |
| GTTCAATGCAACAAAAGACA+GGG | - | chr5.1:52429995-52430014 | MS.gene43636:intron | 35.0% | |
| TACAAATTCTCTTGCAGTGA+CGG | - | chr5.1:52431652-52431671 | MS.gene43636:intron | 35.0% | |
| TACATTTCCCCTCTTAAATC+AGG | - | chr5.1:52431517-52431536 | MS.gene43636:CDS | 35.0% | |
| TACCACATTACTGCTGTTAT+TGG | - | chr5.1:52430474-52430493 | MS.gene43636:intron | 35.0% | |
| TAGACAAAACCAGTAAAACC+GGG | - | chr5.1:52429790-52429809 | MS.gene43636:intron | 35.0% | |
| TAGACAATACCGGTAAAACT+GGG | - | chr5.1:52429676-52429695 | MS.gene43636:intron | 35.0% | |
| TCGGTATCTTGAAATTCCTT+TGG | + | chr5.1:52432635-52432654 | None:intergenic | 35.0% | |
| TCTCAAATTATTACCGGTGT+CGG | + | chr5.1:52429336-52429355 | None:intergenic | 35.0% | |
| TGATTATGAACGGTTTCCAA+TGG | + | chr5.1:52432165-52432184 | None:intergenic | 35.0% | |
| TGGAGTTATTGAAGATCTAG+AGG | - | chr5.1:52432988-52433007 | MS.gene43636:CDS | 35.0% | |
| TTGAGTCTATCAACTTTCGA+AGG | - | chr5.1:52429947-52429966 | MS.gene43636:CDS | 35.0% | |
| ! | ACCAAAAAGAAGGACTTTTG+AGG | + | chr5.1:52430688-52430707 | None:intergenic | 35.0% |
| ! | ACCTCAAAAGTCCTTCTTTT+TGG | - | chr5.1:52430684-52430703 | MS.gene43636:intron | 35.0% |
| ! | ACTAGCTTATCAAACAGTTG+AGG | - | chr5.1:52431769-52431788 | MS.gene43636:intron | 35.0% |
| ! | ATAGGAAGTGACATTTTACG+TGG | - | chr5.1:52432800-52432819 | MS.gene43636:CDS | 35.0% |
| ! | ATGACTTCTCTGGAAAAACA+AGG | - | chr5.1:52430766-52430785 | MS.gene43636:CDS | 35.0% |
| ! | TAGGAAGTGACATTTTACGT+GGG | - | chr5.1:52432801-52432820 | MS.gene43636:CDS | 35.0% |
| ! | TCTATCCTTTCTTTCTAGCA+TGG | + | chr5.1:52432927-52432946 | None:intergenic | 35.0% |
| ! | TGGATGCTTGCTTTATTCTT+TGG | - | chr5.1:52430817-52430836 | MS.gene43636:CDS | 35.0% |
| !! | AAAAGTCCTTCTTTTTGGTG+TGG | - | chr5.1:52430689-52430708 | MS.gene43636:intron | 35.0% |
| !! | AGAGATAACTTGGTTGATAG+GGG | - | chr5.1:52429722-52429741 | MS.gene43636:intron | 35.0% |
| !! | AGCTATTTCCTAAAGGTACT+TGG | + | chr5.1:52431382-52431401 | None:intergenic | 35.0% |
| !! | AGTATTATGGATTGGCTATG+AGG | - | chr5.1:52431685-52431704 | MS.gene43636:intron | 35.0% |
| !! | CTATTTCCTAAAGGTACTTG+GGG | + | chr5.1:52431380-52431399 | None:intergenic | 35.0% |
| !! | CTTACTTGTTAACTTGTGAG+AGG | - | chr5.1:52430947-52430966 | MS.gene43636:CDS | 35.0% |
| !! | CTTCTTTTGGTGGTTTCTAT+GGG | - | chr5.1:52430627-52430646 | MS.gene43636:intron | 35.0% |
| !! | GCTATTTCCTAAAGGTACTT+GGG | + | chr5.1:52431381-52431400 | None:intergenic | 35.0% |
| !! | TCTCTTGATAATTTTCCCAC+TGG | - | chr5.1:52428787-52428806 | MS.gene43636:intron | 35.0% |
| !! | TCTTCTTTTGGTGGTTTCTA+TGG | - | chr5.1:52430626-52430645 | MS.gene43636:intron | 35.0% |
| !! | TGAATTTCTAGAATTGGCAC+GGG | - | chr5.1:52431000-52431019 | MS.gene43636:CDS | 35.0% |
| !! | TGATTGGTCTGAGTGATAAT+GGG | - | chr5.1:52429607-52429626 | MS.gene43636:CDS | 35.0% |
| !! | TTTTGGTGTGGTGTATTTTG+TGG | - | chr5.1:52430701-52430720 | MS.gene43636:intron | 35.0% |
| !!! | ATTGGTTTTTGATCCTTCCT+TGG | + | chr5.1:52431431-52431450 | None:intergenic | 35.0% |
| !!! | CATACCTCTTTTTTGGGATT+TGG | + | chr5.1:52432262-52432281 | None:intergenic | 35.0% |
| AAAACCAGTAAAACCGGGTT+GGG | - | chr5.1:52429795-52429814 | MS.gene43636:intron | 40.0% | |
| AAACTGTTTGGGAGAGCTTA+TGG | + | chr5.1:52431307-52431326 | None:intergenic | 40.0% | |
| AAGAACTGTGTGGAGAAATC+CGG | - | chr5.1:52430320-52430339 | MS.gene43636:intron | 40.0% | |
| AAGATCTAGAGGAAGACAAG+AGG | - | chr5.1:52432999-52433018 | MS.gene43636:CDS | 40.0% | |
| AAGCTATCCTAGAGAGCTTA+TGG | - | chr5.1:52431239-52431258 | MS.gene43636:CDS | 40.0% | |
| AATGCAACAAAAGACAGGGT+TGG | - | chr5.1:52429999-52430018 | MS.gene43636:intron | 40.0% | |
| AATGGCGAACATACCCAAAA+GGG | - | chr5.1:52432089-52432108 | MS.gene43636:intron | 40.0% | |
| AGAAGAACGAATTAGCACGA+CGG | + | chr5.1:52428714-52428733 | None:intergenic | 40.0% | |
| AGAGAATGCAGATCACTATC+AGG | + | chr5.1:52431991-52432010 | None:intergenic | 40.0% | |
| AGAGACAGGAATAACATTGG+GGG | - | chr5.1:52430045-52430064 | MS.gene43636:intron | 40.0% | |
| AGATCTAGAGGAAGACAAGA+GGG | - | chr5.1:52433000-52433019 | MS.gene43636:CDS | 40.0% | |
| AGCTATAGCCTCAAATCTCA+TGG | + | chr5.1:52432682-52432701 | None:intergenic | 40.0% | |
| AGGTTCTTGTAAGTTAGGAG+AGG | - | chr5.1:52430119-52430138 | MS.gene43636:intron | 40.0% | |
| AGTCAACCAGAATATGCCAA+AGG | - | chr5.1:52432616-52432635 | MS.gene43636:intron | 40.0% | |
| ATTTCTCCACACAGTTCTTC+CGG | + | chr5.1:52430319-52430338 | None:intergenic | 40.0% | |
| CCACTGGTAAATCTTTCATC+AGG | - | chr5.1:52428803-52428822 | MS.gene43636:intron | 40.0% | |
| CCTGATGAAAGATTTACCAG+TGG | + | chr5.1:52428806-52428825 | None:intergenic | 40.0% | |
| CGCAATTACACTATGGTTCT+GGG | + | chr5.1:52432418-52432437 | None:intergenic | 40.0% | |
| CGGTTTCCAATGGTTATGAA+TGG | + | chr5.1:52432155-52432174 | None:intergenic | 40.0% | |
| GAAAGTGAGGTAGAGGAAAA+CGG | + | chr5.1:52428632-52428651 | None:intergenic | 40.0% | |
| GATAGTGATCTGCATTCTCT+GGG | - | chr5.1:52431991-52432010 | MS.gene43636:intron | 40.0% | |
| GCCCATACTGTAATTACCAT+TGG | + | chr5.1:52430567-52430586 | None:intergenic | 40.0% | |
| GGCCAATGGTAATTACAGTA+TGG | - | chr5.1:52430562-52430581 | MS.gene43636:intron | 40.0% | |
| GGGCCAAGATTGATTATGAA+CGG | + | chr5.1:52432175-52432194 | None:intergenic | 40.0% | |
| GGTGTTCAACCTACCAATAT+CGG | + | chr5.1:52429221-52429240 | None:intergenic | 40.0% | |
| GTCTACCATGCTAGAAAGAA+AGG | - | chr5.1:52432919-52432938 | MS.gene43636:CDS | 40.0% | |
| GTGGTGTAACTTGAACAAAC+TGG | + | chr5.1:52432333-52432352 | None:intergenic | 40.0% | |
| TAAAACCCTTGAGAAGCTTC+AGG | - | chr5.1:52430857-52430876 | MS.gene43636:CDS | 40.0% | |
| TAATGGCGAACATACCCAAA+AGG | - | chr5.1:52432088-52432107 | MS.gene43636:intron | 40.0% | |
| TCAATGCATCAGACCCTTTA+GGG | - | chr5.1:52431906-52431925 | MS.gene43636:intron | 40.0% | |
| TCAGGTCCATTCATAACCAT+TGG | - | chr5.1:52432146-52432165 | MS.gene43636:intron | 40.0% | |
| TCGCAATTACACTATGGTTC+TGG | + | chr5.1:52432419-52432438 | None:intergenic | 40.0% | |
| TGATGATCGAATGGAAAGTG+AGG | + | chr5.1:52428645-52428664 | None:intergenic | 40.0% | |
| TTCAATGCATCAGACCCTTT+AGG | - | chr5.1:52431905-52431924 | MS.gene43636:intron | 40.0% | |
| ! | ACTCAATTTTCCATACGGTC+AGG | - | chr5.1:52432128-52432147 | MS.gene43636:intron | 40.0% |
| ! | ATTACTGCTGTTATTGGCCT+AGG | - | chr5.1:52430480-52430499 | MS.gene43636:intron | 40.0% |
| ! | CGAGACAAGTATTGCATACT+AGG | + | chr5.1:52430886-52430905 | None:intergenic | 40.0% |
| ! | CTGGAAAACTTGAGTTGTAC+AGG | - | chr5.1:52431624-52431643 | MS.gene43636:CDS | 40.0% |
| ! | GCACAGATTAGGAAAAGTAC+TGG | - | chr5.1:52431605-52431624 | MS.gene43636:CDS | 40.0% |
| ! | GGTGCACTCAATTTTCCATA+CGG | - | chr5.1:52432123-52432142 | MS.gene43636:intron | 40.0% |
| ! | GGTTGAAAACCCAGTTTTAC+CGG | + | chr5.1:52429688-52429707 | None:intergenic | 40.0% |
| ! | GTTTTGTGATCCTGAACTGA+AGG | - | chr5.1:52430281-52430300 | MS.gene43636:intron | 40.0% |
| ! | TGATAGTGATCTGCATTCTC+TGG | - | chr5.1:52431990-52432009 | MS.gene43636:intron | 40.0% |
| ! | TGGAAAAACAAGGCTTTTCC+TGG | - | chr5.1:52430776-52430795 | MS.gene43636:CDS | 40.0% |
| ! | TGGCATATTCTGGTTGACTT+TGG | + | chr5.1:52432615-52432634 | None:intergenic | 40.0% |
| ! | TTCTTTCATGGTGGTAGTGA+AGG | - | chr5.1:52428730-52428749 | MS.gene43636:CDS | 40.0% |
| !! | CTGATTGGTCTGAGTGATAA+TGG | - | chr5.1:52429606-52429625 | MS.gene43636:CDS | 40.0% |
| !! | GGTTCTGGGATACACTATTT+AGG | + | chr5.1:52432404-52432423 | None:intergenic | 40.0% |
| !! | TATAATGGCAGTGCCGATAT+TGG | - | chr5.1:52429205-52429224 | MS.gene43636:intron | 40.0% |
| !! | TTCGTTTTGGTAGTCGTGAA+TGG | + | chr5.1:52428683-52428702 | None:intergenic | 40.0% |
| !! | TTGGTCTTGTTTGGTTTCTC+TGG | - | chr5.1:52430415-52430434 | MS.gene43636:intron | 40.0% |
| !!! | CGCTTGCAAACGTTTTTTGA+AGG | - | chr5.1:52430183-52430202 | MS.gene43636:intron | 40.0% |
| AAAACGGCGGAGATTGAAGA+GGG | + | chr5.1:52428616-52428635 | None:intergenic | 45.0% | |
| AACATACCCAAAAGGGAGCT+AGG | - | chr5.1:52432096-52432115 | MS.gene43636:intron | 45.0% | |
| AATCCGGATGGTTATCTACC+CGG | - | chr5.1:52430336-52430355 | MS.gene43636:intron | 45.0% | |
| ACACGACACATGTCTGACAT+CGG | - | chr5.1:52429407-52429426 | MS.gene43636:intron | 45.0% | |
| ACCTGGTTGGATTTCGAGAT+GGG | + | chr5.1:52432018-52432037 | None:intergenic | 45.0% | |
| AGATTGAAGAGGGATGGTTC+CGG | + | chr5.1:52428606-52428625 | None:intergenic | 45.0% | |
| AGCACTATAGCACTATTGCG+TGG | + | chr5.1:52432352-52432371 | None:intergenic | 45.0% | |
| AGGTTACCTGAAGCTTCTCA+AGG | + | chr5.1:52430866-52430885 | None:intergenic | 45.0% | |
| ATCAATGGCATCATCTTCCC+GGG | + | chr5.1:52430357-52430376 | None:intergenic | 45.0% | |
| ATGAAGCACGGATACGGATA+CGG | - | chr5.1:52429294-52429313 | MS.gene43636:intron | 45.0% | |
| ATTTCAATTCGACGGGAAGC+AGG | - | chr5.1:52430541-52430560 | MS.gene43636:intron | 45.0% | |
| CAAAACCAGTAAAACCGGGT+TGG | - | chr5.1:52429794-52429813 | MS.gene43636:intron | 45.0% | |
| CAAGCAAAGTCCAGAAAGCT+GGG | + | chr5.1:52431958-52431977 | None:intergenic | 45.0% | |
| CAATGCATCAGACCCTTTAG+GGG | - | chr5.1:52431907-52431926 | MS.gene43636:intron | 45.0% | |
| CATCAATGGCATCATCTTCC+CGG | + | chr5.1:52430358-52430377 | None:intergenic | 45.0% | |
| CGATCCTCTATTGACAACAC+TGG | + | chr5.1:52432301-52432320 | None:intergenic | 45.0% | |
| CTGACCAGTGTTGTCAATAG+AGG | - | chr5.1:52432294-52432313 | MS.gene43636:intron | 45.0% | |
| CTGTCAAGAAGACAGTGTCA+CGG | - | chr5.1:52430601-52430620 | MS.gene43636:intron | 45.0% | |
| CTTGAACTGGTGGAACATCT+CGG | - | chr5.1:52430735-52430754 | MS.gene43636:CDS | 45.0% | |
| CTTGACAGCAGTGAAAGTCA+CGG | + | chr5.1:52430589-52430608 | None:intergenic | 45.0% | |
| GAACCTTCTTTAGCAAGCTC+TGG | + | chr5.1:52430105-52430124 | None:intergenic | 45.0% | |
| GGAAGTGGAGTTAAGATGTC+TGG | - | chr5.1:52432890-52432909 | MS.gene43636:CDS | 45.0% | |
| GGCCAATAACAGCAGTAATG+TGG | + | chr5.1:52430479-52430498 | None:intergenic | 45.0% | |
| GGTTACCTGAAGCTTCTCAA+GGG | + | chr5.1:52430865-52430884 | None:intergenic | 45.0% | |
| GTATTCGTACTCGGAAGAGA+CGG | - | chr5.1:52432832-52432851 | MS.gene43636:CDS | 45.0% | |
| TACCTGGTTGGATTTCGAGA+TGG | + | chr5.1:52432019-52432038 | None:intergenic | 45.0% | |
| TATGAAGCACGGACACTCTT+TGG | + | chr5.1:52429445-52429464 | None:intergenic | 45.0% | |
| TATGAATGGACCTGACCGTA+TGG | + | chr5.1:52432141-52432160 | None:intergenic | 45.0% | |
| TATTCGTACTCGGAAGAGAC+GGG | - | chr5.1:52432833-52432852 | MS.gene43636:CDS | 45.0% | |
| TCGAATGGAAAGTGAGGTAG+AGG | + | chr5.1:52428639-52428658 | None:intergenic | 45.0% | |
| TCGTTGCTGTCATTCATGCA+CGG | - | chr5.1:52430907-52430926 | MS.gene43636:CDS | 45.0% | |
| TCTATCTGTAAACATGCGGC+AGG | + | chr5.1:52429834-52429853 | None:intergenic | 45.0% | |
| TGATCCTGAACTGAAGGACA+CGG | - | chr5.1:52430287-52430306 | MS.gene43636:intron | 45.0% | |
| TGATTTCCGGAAGAACTGTG+TGG | - | chr5.1:52430310-52430329 | MS.gene43636:intron | 45.0% | |
| ! | ACCTAATCCTAGCTCCCTTT+TGG | + | chr5.1:52432106-52432125 | None:intergenic | 45.0% |
| ! | AGTGTCACGGCTTCTTCTTT+TGG | - | chr5.1:52430614-52430633 | MS.gene43636:intron | 45.0% |
| ! | CCTAATCCTAGCTCCCTTTT+GGG | + | chr5.1:52432105-52432124 | None:intergenic | 45.0% |
| ! | GACGGATGAACGTTTCGTTT+TGG | + | chr5.1:52428696-52428715 | None:intergenic | 45.0% |
| ! | GTAGGTTGAACACCTTCACT+CGG | - | chr5.1:52429227-52429246 | MS.gene43636:intron | 45.0% |
| ! | TAGGTTGAACACCTTCACTC+GGG | - | chr5.1:52429228-52429247 | MS.gene43636:intron | 45.0% |
| ! | TGTGGTGTATTTTGTGGCCT+CGG | - | chr5.1:52430707-52430726 | MS.gene43636:intron | 45.0% |
| ! | TTGGTGGTTTCTATGGGCTA+TGG | - | chr5.1:52430633-52430652 | MS.gene43636:intron | 45.0% |
| !! | AAAGAGTGTCCGTGCTTCAT+AGG | - | chr5.1:52429444-52429463 | MS.gene43636:intron | 45.0% |
| !! | ACACCAGAGCTTGCTAAAGA+AGG | - | chr5.1:52430099-52430118 | MS.gene43636:intron | 45.0% |
| !! | CGGTGCTGCTTTCAGTATTA+TGG | - | chr5.1:52431672-52431691 | MS.gene43636:intron | 45.0% |
| !! | GACGGGAGATGATTTTGATG+AGG | - | chr5.1:52432850-52432869 | MS.gene43636:CDS | 45.0% |
| !! | TATAGGTGTCGGTGTTGTGT+TGG | - | chr5.1:52429378-52429397 | MS.gene43636:intron | 45.0% |
| !! | TTAGACCACCAAGTGTTGGA+CGG | + | chr5.1:52430665-52430684 | None:intergenic | 45.0% |
| !! | TTCTGGTTGACTTTGGAACG+AGG | + | chr5.1:52432608-52432627 | None:intergenic | 45.0% |
| !!! | TGTTATATTTTATTAAATTT+TGG | - | chr5.1:52428989-52429008 | MS.gene43636:intron | 5.0% |
| AACAGGCCCCAAGTACCTTT+AGG | - | chr5.1:52431371-52431390 | MS.gene43636:CDS | 50.0% | |
| ACCCTGGAACCTATGAAGCA+CGG | + | chr5.1:52429456-52429475 | None:intergenic | 50.0% | |
| ACGAAGTGACAAACACACCC+TGG | + | chr5.1:52429472-52429491 | None:intergenic | 50.0% | |
| ACTGTGTGGAGAAATCCGGA+TGG | - | chr5.1:52430324-52430343 | MS.gene43636:intron | 50.0% | |
| AGTGAGGTAGAGGAAAACGG+CGG | + | chr5.1:52428629-52428648 | None:intergenic | 50.0% | |
| ATCACCGTGTCCTTCAGTTC+AGG | + | chr5.1:52430294-52430313 | None:intergenic | 50.0% | |
| ATCCGGATGGTTATCTACCC+GGG | - | chr5.1:52430337-52430356 | MS.gene43636:intron | 50.0% | |
| ATCTGTAAACATGCGGCAGG+TGG | + | chr5.1:52429831-52429850 | None:intergenic | 50.0% | |
| ATGTCTTACACCGATCACGG+CGG | - | chr5.1:52428562-52428581 | MS.gene43636:CDS | 50.0% | |
| CAAAGTCCAGAAAGCTGGGA+TGG | + | chr5.1:52431954-52431973 | None:intergenic | 50.0% | |
| CACGACACATGTCTGACATC+GGG | - | chr5.1:52429408-52429427 | MS.gene43636:intron | 50.0% | |
| CAGGCTATGAAGCACGGATA+CGG | - | chr5.1:52429288-52429307 | MS.gene43636:intron | 50.0% | |
| CATTCGATCATCACCCTCGT+CGG | - | chr5.1:52428652-52428671 | MS.gene43636:CDS | 50.0% | |
| CCCAAAAGGGAGCTAGGATT+AGG | - | chr5.1:52432102-52432121 | MS.gene43636:intron | 50.0% | |
| CCTGGTTGGATTTCGAGATG+GGG | + | chr5.1:52432017-52432036 | None:intergenic | 50.0% | |
| CTGAAGGACACGGTGATTTC+CGG | - | chr5.1:52430297-52430316 | MS.gene43636:intron | 50.0% | |
| CTTCACTCGGGTTTGAACCT+GGG | - | chr5.1:52429240-52429259 | MS.gene43636:intron | 50.0% | |
| GAAAACGGCGGAGATTGAAG+AGG | + | chr5.1:52428617-52428636 | None:intergenic | 50.0% | |
| GAGAACCCTGATGAACCGAA+CGG | - | chr5.1:52430153-52430172 | MS.gene43636:intron | 50.0% | |
| GAGCCATTTCACACATGCCT+AGG | + | chr5.1:52430500-52430519 | None:intergenic | 50.0% | |
| GAGGTTAGACCACCAAGTGT+TGG | + | chr5.1:52430669-52430688 | None:intergenic | 50.0% | |
| GAGTTCCAGGCTATGAAGCA+CGG | - | chr5.1:52429282-52429301 | MS.gene43636:intron | 50.0% | |
| GCAAGCAAAGTCCAGAAAGC+TGG | + | chr5.1:52431959-52431978 | None:intergenic | 50.0% | |
| GCGTCGTAGGTATTCGTACT+CGG | - | chr5.1:52432823-52432842 | MS.gene43636:CDS | 50.0% | |
| TCCGTGCTTCATAGGTTCCA+GGG | - | chr5.1:52429452-52429471 | MS.gene43636:intron | 50.0% | |
| TCGGTTCATCAGGGTTCTCA+CGG | + | chr5.1:52430152-52430171 | None:intergenic | 50.0% | |
| TCTGTAAACATGCGGCAGGT+GGG | + | chr5.1:52429830-52429849 | None:intergenic | 50.0% | |
| TGGCCTAGGCATGTGTGAAA+TGG | - | chr5.1:52430494-52430513 | MS.gene43636:intron | 50.0% | |
| TTCCCGGGTAGATAACCATC+CGG | + | chr5.1:52430342-52430361 | None:intergenic | 50.0% | |
| TTCGCCACAGTTCCCCTAAA+GGG | + | chr5.1:52431922-52431941 | None:intergenic | 50.0% | |
| ! | GCATGTGTGAAATGGCTCTG+TGG | - | chr5.1:52430502-52430521 | MS.gene43636:intron | 50.0% |
| ! | GTCACGGCTTCTTCTTTTGG+TGG | - | chr5.1:52430617-52430636 | MS.gene43636:intron | 50.0% |
| !! | AAAGGTACTTGGGGCCTGTT+TGG | + | chr5.1:52431371-52431390 | None:intergenic | 50.0% |
| !! | ACATTTTACGTGGGCGTCGT+AGG | - | chr5.1:52432810-52432829 | MS.gene43636:CDS | 50.0% |
| !! | ATGGCAGTGCCGATATTGGT+AGG | - | chr5.1:52429209-52429228 | MS.gene43636:intron | 50.0% |
| !! | TGTCGGTGTTGTGTTGGTGT+CGG | - | chr5.1:52429384-52429403 | MS.gene43636:intron | 50.0% |
| CAAGCATCCAACAGAGCCAC+AGG | + | chr5.1:52430807-52430826 | None:intergenic | 55.0% | |
| CACCAGTTCAAGTGCTTCCG+AGG | + | chr5.1:52430727-52430746 | None:intergenic | 55.0% | |
| CCAGGTTCAAACCCGAGTGA+AGG | + | chr5.1:52429242-52429261 | None:intergenic | 55.0% | |
| CCCCATCTCGAAATCCAACC+AGG | - | chr5.1:52432014-52432033 | MS.gene43636:intron | 55.0% | |
| CCTTCACTCGGGTTTGAACC+TGG | - | chr5.1:52429239-52429258 | MS.gene43636:intron | 55.0% | |
| CGACGAGGGTGATGATCGAA+TGG | + | chr5.1:52428654-52428673 | None:intergenic | 55.0% | |
| CGTATCCGTGCTTCATAGCC+TGG | + | chr5.1:52429290-52429309 | None:intergenic | 55.0% | |
| CTTCGCCACAGTTCCCCTAA+AGG | + | chr5.1:52431923-52431942 | None:intergenic | 55.0% | |
| GAGGAAGCTGTCGCAGTTGT+TGG | - | chr5.1:52432869-52432888 | MS.gene43636:CDS | 55.0% | |
| GCTGTCGCAGTTGTTGGAAG+TGG | - | chr5.1:52432875-52432894 | MS.gene43636:CDS | 55.0% | |
| GGAGTAGTCCGTCCAACACT+TGG | - | chr5.1:52430654-52430673 | MS.gene43636:intron | 55.0% | |
| GTAGTCCGTCCAACACTTGG+TGG | - | chr5.1:52430657-52430676 | MS.gene43636:intron | 55.0% | |
| GTCCGTGCTTCATAGGTTCC+AGG | - | chr5.1:52429451-52429470 | MS.gene43636:intron | 55.0% | |
| TCGGACCGTTCGGTTCATCA+GGG | + | chr5.1:52430161-52430180 | None:intergenic | 55.0% | |
| TGCAAGCGTTTCGGACCGTT+CGG | + | chr5.1:52430171-52430190 | None:intergenic | 55.0% | |
| TTCGGACCGTTCGGTTCATC+AGG | + | chr5.1:52430162-52430181 | None:intergenic | 55.0% | |
| ! | CAGACCCTTTAGGGGAACTG+TGG | - | chr5.1:52431915-52431934 | MS.gene43636:intron | 55.0% |
| ! | CAGTAAAACCGGGTTGGGTG+CGG | - | chr5.1:52429800-52429819 | MS.gene43636:intron | 55.0% |
| ! | GGAACTGTGGCGAAGAGCAT+GGG | - | chr5.1:52431928-52431947 | MS.gene43636:intron | 55.0% |
| !! | CTCGGAAGCACTTGAACTGG+TGG | - | chr5.1:52430725-52430744 | MS.gene43636:CDS | 55.0% |
| !! | GTGAATGGAAGCACCGACGA+GGG | + | chr5.1:52428668-52428687 | None:intergenic | 55.0% |
| AAGAGGGATGGTTCCGGCGA+CGG | + | chr5.1:52428600-52428619 | None:intergenic | 60.0% | |
| CATGGGCCATCCCAGCTTTC+TGG | - | chr5.1:52431945-52431964 | MS.gene43636:intron | 60.0% | |
| CGGCGGAGATTGAAGAGGGA+TGG | + | chr5.1:52428612-52428631 | None:intergenic | 60.0% | |
| GGGAACTGTGGCGAAGAGCA+TGG | - | chr5.1:52431927-52431946 | MS.gene43636:intron | 60.0% | |
| TTCGACGGGAAGCAGGCCAA+TGG | - | chr5.1:52430548-52430567 | MS.gene43636:intron | 60.0% | |
| ! | CGCACCCAACCCGGTTTTAC+TGG | + | chr5.1:52429802-52429821 | None:intergenic | 60.0% |
| !! | CGTGAATGGAAGCACCGACG+AGG | + | chr5.1:52428669-52428688 | None:intergenic | 60.0% |
| !! | GGCCTCGGAAGCACTTGAAC+TGG | - | chr5.1:52430722-52430741 | MS.gene43636:CDS | 60.0% |
| !!! | GCTTTTCCTGGTGCTGCCTG+TGG | - | chr5.1:52430788-52430807 | MS.gene43636:CDS | 60.0% |
| ACAGAGCCACAGGCAGCACC+AGG | + | chr5.1:52430797-52430816 | None:intergenic | 65.0% | |
| CGACACTGACACGCCGACAC+CGG | - | chr5.1:52429320-52429339 | MS.gene43636:intron | 65.0% | |
| GATGGTTCCGGCGACGGTGA+CGG | + | chr5.1:52428594-52428613 | None:intergenic | 65.0% | |
| TGGGTTCTCCGCACCCAACC+CGG | + | chr5.1:52429811-52429830 | None:intergenic | 65.0% | |
| ! | GGTGCTGCCTGTGGCTCTGT+TGG | - | chr5.1:52430797-52430816 | MS.gene43636:CDS | 65.0% |
| ACGGCGATCGCCGCCGTGAT+CGG | + | chr5.1:52428575-52428594 | None:intergenic | 70.0% | |
| GCGATCGCCGTCACCGTCGC+CGG | - | chr5.1:52428584-52428603 | MS.gene43636:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 52428562 | 52433027 | 52428562 | ID=MS.gene43636 |
| chr5.1 | mRNA | 52428562 | 52433027 | 52428562 | ID=MS.gene43636.t1;Parent=MS.gene43636 |
| chr5.1 | exon | 52432765 | 52433027 | 52432765 | ID=MS.gene43636.t1.exon1;Parent=MS.gene43636.t1 |
| chr5.1 | CDS | 52432765 | 52433027 | 52432765 | ID=cds.MS.gene43636.t1;Parent=MS.gene43636.t1 |
| chr5.1 | exon | 52430711 | 52431644 | 52430711 | ID=MS.gene43636.t1.exon2;Parent=MS.gene43636.t1 |
| chr5.1 | CDS | 52430711 | 52431644 | 52430711 | ID=cds.MS.gene43636.t1;Parent=MS.gene43636.t1 |
| chr5.1 | exon | 52429883 | 52429978 | 52429883 | ID=MS.gene43636.t1.exon3;Parent=MS.gene43636.t1 |
| chr5.1 | CDS | 52429883 | 52429978 | 52429883 | ID=cds.MS.gene43636.t1;Parent=MS.gene43636.t1 |
| chr5.1 | exon | 52429554 | 52429690 | 52429554 | ID=MS.gene43636.t1.exon4;Parent=MS.gene43636.t1 |
| chr5.1 | CDS | 52429554 | 52429690 | 52429554 | ID=cds.MS.gene43636.t1;Parent=MS.gene43636.t1 |
| chr5.1 | exon | 52428562 | 52428757 | 52428562 | ID=MS.gene43636.t1.exon5;Parent=MS.gene43636.t1 |
| chr5.1 | CDS | 52428562 | 52428757 | 52428562 | ID=cds.MS.gene43636.t1;Parent=MS.gene43636.t1 |
| Gene Sequence |
| Protein sequence |
