Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43672.t1 | GAU47155.1 | 88.8 | 89 | 10 | 0 | 1 | 89 | 99 | 187 | 1.30E-38 | 169.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43672.t1 | Q9M2A1 | 70.8 | 89 | 26 | 0 | 1 | 89 | 283 | 371 | 3.5e-32 | 139.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43672.t1 | A0A2Z6PDC7 | 88.8 | 89 | 10 | 0 | 1 | 89 | 99 | 187 | 9.6e-39 | 169.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056173 | MS.gene43672 | 0.800846 | 1.19E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43672.t1 | MTR_1g051205 | 88.889 | 90 | 10 | 0 | 1 | 90 | 265 | 354 | 1.33e-52 | 172 |
| MS.gene43672.t1 | MTR_0004s0610 | 90.000 | 90 | 9 | 0 | 1 | 90 | 266 | 355 | 2.07e-52 | 171 |
| MS.gene43672.t1 | MTR_5g068170 | 75.556 | 90 | 5 | 1 | 1 | 90 | 195 | 267 | 1.98e-37 | 130 |
| MS.gene43672.t1 | MTR_5g068180 | 79.545 | 44 | 9 | 0 | 94 | 137 | 1 | 44 | 3.23e-20 | 79.3 |
| MS.gene43672.t1 | MTR_6g034745 | 72.340 | 47 | 13 | 0 | 31 | 77 | 271 | 317 | 8.59e-16 | 73.6 |
| MS.gene43672.t1 | MTR_5g018910 | 49.206 | 63 | 26 | 2 | 92 | 151 | 432 | 491 | 2.37e-11 | 61.2 |
| MS.gene43672.t1 | MTR_5g018070 | 37.374 | 99 | 51 | 2 | 53 | 151 | 288 | 375 | 8.29e-11 | 59.7 |
| MS.gene43672.t1 | MTR_5g018060 | 45.070 | 71 | 36 | 1 | 81 | 151 | 386 | 453 | 8.65e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43672.t1 | AT3G42630 | 70.000 | 90 | 27 | 0 | 1 | 90 | 283 | 372 | 1.02e-39 | 139 |
Find 41 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGAGAATGGCGCTGTTT+TGG | 0.201918 | 5.1:+52908291 | MS.gene43672:CDS |
| TAGAAGGCTTGGAAGGAATT+TGG | 0.229388 | 5.1:+52908403 | MS.gene43672:CDS |
| GTTCCTGATTTGGTTACTTA+TGG | 0.229795 | 5.1:+52908356 | MS.gene43672:CDS |
| TTTGTTAGAATGGTTGAATT+AGG | 0.246590 | 5.1:+52908224 | None:intergenic |
| TCATAGATCCTTTGGTCTTC+AGG | 0.255931 | 5.1:-52909779 | None:intergenic |
| TGAGAAGGTGGTTCCTGATT+TGG | 0.298398 | 5.1:+52908346 | MS.gene43672:CDS |
| TCATCTTAGTATTGAACATA+TGG | 0.306539 | 5.1:+52908319 | MS.gene43672:CDS |
| TTGTTAGAATGGTTGAATTA+GGG | 0.352168 | 5.1:+52908225 | None:intergenic |
| GACGTTTAATATCCGTGCTT+TGG | 0.397875 | 5.1:+52908265 | MS.gene43672:CDS |
| TGGATGCTTACTTGGATAGA+AGG | 0.398737 | 5.1:+52908387 | MS.gene43672:CDS |
| CAACCATAAGTAACCAAATC+AGG | 0.419881 | 5.1:-52908359 | None:intergenic |
| ACATTTCTTGTCCTTGATTG+AGG | 0.428112 | 5.1:-52909735 | None:intergenic |
| CAAGGACAAGAAATGTTTCA+TGG | 0.430865 | 5.1:+52909742 | MS.gene43672:CDS |
| TTGCGTTGTGGATGCTTACT+TGG | 0.440242 | 5.1:+52908379 | MS.gene43672:CDS |
| ATATTAAACGTCGTAACATC+AGG | 0.448111 | 5.1:-52908254 | None:intergenic |
| GACGGATCCGTTTGTGTTTG+AGG | 0.453067 | 5.1:+52908472 | MS.gene43672:CDS |
| AGGTTGGATCATAGATCCTT+TGG | 0.455453 | 5.1:-52909787 | None:intergenic |
| TGTTTGTCCGCGGTTGTTGA+CGG | 0.464307 | 5.1:+52908454 | MS.gene43672:CDS |
| GCTTACTTGGATAGAAGGCT+TGG | 0.482566 | 5.1:+52908392 | MS.gene43672:CDS |
| CATCTTAGTATTGAACATAT+GGG | 0.485443 | 5.1:+52908320 | MS.gene43672:CDS |
| ACTATGACGATAACCATTGT+TGG | 0.487971 | 5.1:-52909987 | None:intergenic |
| CTGTATGAGCTAGATGAAAA+CGG | 0.518784 | 5.1:+52909830 | MS.gene43672:CDS |
| CCTAAAACCTCAAACACAAA+CGG | 0.528045 | 5.1:-52908479 | None:intergenic |
| TTCTCGAAAACGCCAAAGCA+CGG | 0.530023 | 5.1:-52908277 | None:intergenic |
| TGAAGATGAGTCCTCAATCA+AGG | 0.538894 | 5.1:+52909724 | MS.gene43672:CDS |
| ACTTGGATAGAAGGCTTGGA+AGG | 0.547884 | 5.1:+52908396 | MS.gene43672:CDS |
| TTCAGCACAAATGTCCATCC+AGG | 0.559055 | 5.1:-52909807 | None:intergenic |
| GGTCTTCAGGAAACATCCCT+AGG | 0.569027 | 5.1:-52909766 | None:intergenic |
| CTAGATGAAAACGGAAAGGA+AGG | 0.575011 | 5.1:+52909839 | MS.gene43672:CDS |
| AAGAAATGTTTCATGGACCT+AGG | 0.582195 | 5.1:+52909749 | MS.gene43672:CDS |
| GCACAAATGTCCATCCAGGT+TGG | 0.587752 | 5.1:-52909803 | None:intergenic |
| AGAAATGTTTCATGGACCTA+GGG | 0.592884 | 5.1:+52909750 | MS.gene43672:CDS |
| TGAACATATGGGAATTGAGA+AGG | 0.593588 | 5.1:+52908331 | MS.gene43672:CDS |
| GATCTATGATCCAACCTGGA+TGG | 0.601268 | 5.1:+52909793 | MS.gene43672:CDS |
| TGAGCTAGATGAAAACGGAA+AGG | 0.628613 | 5.1:+52909835 | MS.gene43672:CDS |
| AAAGGATCTATGATCCAACC+TGG | 0.629967 | 5.1:+52909789 | MS.gene43672:CDS |
| GGATGTTTCCTGAAGACCAA+AGG | 0.631486 | 5.1:+52909771 | MS.gene43672:CDS |
| GGTTACTTATGGTTGCGTTG+TGG | 0.646200 | 5.1:+52908367 | MS.gene43672:CDS |
| ACATATGGGAATTGAGAAGG+TGG | 0.658498 | 5.1:+52908334 | MS.gene43672:CDS |
| AACGGATCCGTCAACAACCG+CGG | 0.664779 | 5.1:-52908461 | None:intergenic |
| TGGATGTGGATGTTTGTCCG+CGG | 0.740396 | 5.1:+52908444 | MS.gene43672:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTAATGGTTAACTTA+TGG | - | chr5.1:52909877-52909896 | None:intergenic | 15.0% |
| !!! | AAATATATCTAAAGCTATTC+CGG | - | chr5.1:52909705-52909724 | None:intergenic | 20.0% |
| !!! | TCTTTTTAACTAACATGATT+AGG | - | chr5.1:52909515-52909534 | None:intergenic | 20.0% |
| ! | AAATGCACTAAAAATCAGAA+AGG | + | chr5.1:52909458-52909477 | MS.gene43672:intron | 25.0% |
| ! | AATACCTTAAGAAACGTTAT+CGG | + | chr5.1:52908588-52908607 | MS.gene43672:intron | 25.0% |
| ! | ATTCAATCTTGAAGAATACT+TGG | + | chr5.1:52908799-52908818 | MS.gene43672:intron | 25.0% |
| !! | CATCTTAGTATTGAACATAT+GGG | + | chr5.1:52908320-52908339 | MS.gene43672:CDS | 25.0% |
| !! | GTGATTGACGAAATTTTTAA+TGG | - | chr5.1:52909888-52909907 | None:intergenic | 25.0% |
| !! | GTGTAGTTAATTTGAAACAA+TGG | + | chr5.1:52908672-52908691 | MS.gene43672:intron | 25.0% |
| !! | TAGTTAATTTGAAACAATGG+TGG | + | chr5.1:52908675-52908694 | MS.gene43672:intron | 25.0% |
| !! | TCATCTTAGTATTGAACATA+TGG | + | chr5.1:52908319-52908338 | MS.gene43672:CDS | 25.0% |
| !!! | GAATTTCAAAAGGTATTAGA+AGG | + | chr5.1:52909355-52909374 | MS.gene43672:intron | 25.0% |
| !!! | GGAGTTTGTTTTGAATAAAA+TGG | + | chr5.1:52908424-52908443 | MS.gene43672:CDS | 25.0% |
| !!! | TGTTTTGAATAAAATGGATG+TGG | + | chr5.1:52908430-52908449 | MS.gene43672:CDS | 25.0% |
| !!! | TTTTTGAAATAGACAGATTC+TGG | + | chr5.1:52909319-52909338 | MS.gene43672:intron | 25.0% |
| AATAAATCTACTCTGGTCTA+TGG | + | chr5.1:52909388-52909407 | MS.gene43672:intron | 30.0% | |
| ACAATTTGTCATACCACAAA+AGG | - | chr5.1:52909625-52909644 | None:intergenic | 30.0% | |
| ATATTAAACGTCGTAACATC+AGG | - | chr5.1:52908257-52908276 | None:intergenic | 30.0% | |
| CATAATGAATATGAATTCCC+AGG | - | chr5.1:52908990-52909009 | None:intergenic | 30.0% | |
| CTAAATTAGCCCACTTAAAT+TGG | + | chr5.1:52908843-52908862 | MS.gene43672:intron | 30.0% | |
| CTTCAGTTGAGAATTTCAAA+AGG | + | chr5.1:52909345-52909364 | MS.gene43672:intron | 30.0% | |
| GCTAGTAGTTCCAAAATATT+TGG | - | chr5.1:52908619-52908638 | None:intergenic | 30.0% | |
| TATTTGATGTGACTGTTTGA+TGG | + | chr5.1:52909150-52909169 | MS.gene43672:intron | 30.0% | |
| TGGTTTGAATAAATCTACTC+TGG | + | chr5.1:52909381-52909400 | MS.gene43672:intron | 30.0% | |
| ! | TTTTGTGGTATGACAAATTG+TGG | + | chr5.1:52909624-52909643 | MS.gene43672:intron | 30.0% |
| !! | ACTATGATTTTAGCCAACAA+TGG | + | chr5.1:52909974-52909993 | MS.gene43672:CDS | 30.0% |
| !! | CAAAAGGTATTAGAAGGTTA+TGG | + | chr5.1:52909361-52909380 | MS.gene43672:intron | 30.0% |
| AACAACATGAGTGGAGTTAT+AGG | + | chr5.1:52908552-52908571 | MS.gene43672:intron | 35.0% | |
| AAGAAATGTTTCATGGACCT+AGG | + | chr5.1:52909749-52909768 | MS.gene43672:CDS | 35.0% | |
| ACAACATGAGTGGAGTTATA+GGG | + | chr5.1:52908553-52908572 | MS.gene43672:intron | 35.0% | |
| ACATTTCTTGTCCTTGATTG+AGG | - | chr5.1:52909738-52909757 | None:intergenic | 35.0% | |
| ACTATGACGATAACCATTGT+TGG | - | chr5.1:52909990-52910009 | None:intergenic | 35.0% | |
| AGAAATGTTTCATGGACCTA+GGG | + | chr5.1:52909750-52909769 | MS.gene43672:CDS | 35.0% | |
| AGATCCACCAAAGATTTCAA+GGG | - | chr5.1:52909590-52909609 | None:intergenic | 35.0% | |
| ATTTCAGGAAAACCAAGAGA+AGG | + | chr5.1:52909252-52909271 | MS.gene43672:intron | 35.0% | |
| CAACCATAAGTAACCAAATC+AGG | - | chr5.1:52908362-52908381 | None:intergenic | 35.0% | |
| CAAGGACAAGAAATGTTTCA+TGG | + | chr5.1:52909742-52909761 | MS.gene43672:CDS | 35.0% | |
| CACTTAGTGAAACTGAAAGA+CGG | + | chr5.1:52908929-52908948 | MS.gene43672:intron | 35.0% | |
| CCTAAAACCTCAAACACAAA+CGG | - | chr5.1:52908482-52908501 | None:intergenic | 35.0% | |
| CTGTATGAGCTAGATGAAAA+CGG | + | chr5.1:52909830-52909849 | MS.gene43672:CDS | 35.0% | |
| GTCCTTATGAGACTTCAAAA+TGG | - | chr5.1:52909668-52909687 | None:intergenic | 35.0% | |
| TCTATGGAGCACATTCATTA+AGG | + | chr5.1:52909202-52909221 | MS.gene43672:intron | 35.0% | |
| TGAACATATGGGAATTGAGA+AGG | + | chr5.1:52908331-52908350 | MS.gene43672:CDS | 35.0% | |
| ! | ATCGGAGAGACCAAATATTT+TGG | + | chr5.1:52908606-52908625 | MS.gene43672:intron | 35.0% |
| ! | TATATCTAAAGCTATTCCGG+AGG | - | chr5.1:52909702-52909721 | None:intergenic | 35.0% |
| ! | TATGAATTCCCAGGATTTTC+AGG | - | chr5.1:52908981-52909000 | None:intergenic | 35.0% |
| !! | GTTCCTGATTTGGTTACTTA+TGG | + | chr5.1:52908356-52908375 | MS.gene43672:CDS | 35.0% |
| !! | TTGGTTTTCCTGAAATTGCT+TGG | - | chr5.1:52909248-52909267 | None:intergenic | 35.0% |
| !!! | GTCCATTTTGAAGTCTCATA+AGG | + | chr5.1:52909663-52909682 | MS.gene43672:intron | 35.0% |
| !!! | GTGTTTGAGGTTTTAGGTAA+AGG | + | chr5.1:52908485-52908504 | MS.gene43672:intron | 35.0% |
| AAAGGATCTATGATCCAACC+TGG | + | chr5.1:52909789-52909808 | MS.gene43672:CDS | 40.0% | |
| ACAAGACACAACAACATGAG+TGG | + | chr5.1:52908543-52908562 | MS.gene43672:intron | 40.0% | |
| ACATATGGGAATTGAGAAGG+TGG | + | chr5.1:52908334-52908353 | MS.gene43672:CDS | 40.0% | |
| AGAGTCAAGATTGGAGTCTA+TGG | + | chr5.1:52909186-52909205 | MS.gene43672:intron | 40.0% | |
| AGCATAGTGGCAGATACAAA+AGG | + | chr5.1:52909422-52909441 | MS.gene43672:intron | 40.0% | |
| AGGTGACTTTCACTTGAGTT+TGG | + | chr5.1:52908505-52908524 | MS.gene43672:intron | 40.0% | |
| AGGTTGGATCATAGATCCTT+TGG | - | chr5.1:52909790-52909809 | None:intergenic | 40.0% | |
| AGTGAAACTGAAAGACGGTA+TGG | + | chr5.1:52908934-52908953 | MS.gene43672:intron | 40.0% | |
| AGTTTGCACCTGAAAATCCT+GGG | + | chr5.1:52908970-52908989 | MS.gene43672:intron | 40.0% | |
| ATGTACATCATTCCTACACC+TGG | + | chr5.1:52909007-52909026 | MS.gene43672:intron | 40.0% | |
| CAATCTTGACTCTGTTCTTG+TGG | - | chr5.1:52909179-52909198 | None:intergenic | 40.0% | |
| CACAAGAACAGAGTCAAGAT+TGG | + | chr5.1:52909177-52909196 | MS.gene43672:intron | 40.0% | |
| CCTTGACACTTCATCATCAT+AGG | - | chr5.1:52908704-52908723 | None:intergenic | 40.0% | |
| CGTCTTTCAGTTTCACTAAG+TGG | - | chr5.1:52908931-52908950 | None:intergenic | 40.0% | |
| CTAGATGAAAACGGAAAGGA+AGG | + | chr5.1:52909839-52909858 | MS.gene43672:CDS | 40.0% | |
| CTCTCCGATAACGTTTCTTA+AGG | - | chr5.1:52908595-52908614 | None:intergenic | 40.0% | |
| GACGTTTAATATCCGTGCTT+TGG | + | chr5.1:52908265-52908284 | MS.gene43672:CDS | 40.0% | |
| GAGATCCACCAAAGATTTCA+AGG | - | chr5.1:52909591-52909610 | None:intergenic | 40.0% | |
| TAGAAGGCTTGGAAGGAATT+TGG | + | chr5.1:52908403-52908422 | MS.gene43672:CDS | 40.0% | |
| TGAAGATGAGTCCTCAATCA+AGG | + | chr5.1:52909724-52909743 | MS.gene43672:CDS | 40.0% | |
| TGACTTTCACTTGAGTTTGG+AGG | + | chr5.1:52908508-52908527 | MS.gene43672:intron | 40.0% | |
| TGAGCTAGATGAAAACGGAA+AGG | + | chr5.1:52909835-52909854 | MS.gene43672:CDS | 40.0% | |
| TGGATGCTTACTTGGATAGA+AGG | + | chr5.1:52908387-52908406 | MS.gene43672:CDS | 40.0% | |
| TGTGCATCATGCAATTCTTG+CGG | - | chr5.1:52909292-52909311 | None:intergenic | 40.0% | |
| ! | ATGATGATGAAGTGTCAAGG+TGG | + | chr5.1:52908704-52908723 | MS.gene43672:intron | 40.0% |
| ! | CCTATGATGATGAAGTGTCA+AGG | + | chr5.1:52908701-52908720 | MS.gene43672:intron | 40.0% |
| ! | TCATAGATCCTTTGGTCTTC+AGG | - | chr5.1:52909782-52909801 | None:intergenic | 40.0% |
| !! | AGTGGTATTGACTTGAGATC+TGG | - | chr5.1:52908913-52908932 | None:intergenic | 40.0% |
| !! | CCGTTTGTGTTTGAGGTTTT+AGG | + | chr5.1:52908479-52908498 | MS.gene43672:CDS | 40.0% |
| !! | GTGGTATTGACTTGAGATCT+GGG | - | chr5.1:52908912-52908931 | None:intergenic | 40.0% |
| !!! | CTTGAGTTTGGAGGCATTTT+TGG | + | chr5.1:52908517-52908536 | MS.gene43672:intron | 40.0% |
| AAATACTCACAGCTCCTCAG+AGG | - | chr5.1:52909135-52909154 | None:intergenic | 45.0% | |
| AAGAGAGGCCAAGCAATTTC+AGG | + | chr5.1:52909237-52909256 | MS.gene43672:intron | 45.0% | |
| AATACTCACAGCTCCTCAGA+GGG | - | chr5.1:52909134-52909153 | None:intergenic | 45.0% | |
| ACTTGGATAGAAGGCTTGGA+AGG | + | chr5.1:52908396-52908415 | MS.gene43672:CDS | 45.0% | |
| CAGTTTGCACCTGAAAATCC+TGG | + | chr5.1:52908969-52908988 | MS.gene43672:intron | 45.0% | |
| CCAAAGATTTCAAGGGCCAA+TGG | - | chr5.1:52909583-52909602 | None:intergenic | 45.0% | |
| CCATTGGCCCTTGAAATCTT+TGG | + | chr5.1:52909580-52909599 | MS.gene43672:intron | 45.0% | |
| GATCTATGATCCAACCTGGA+TGG | + | chr5.1:52909793-52909812 | MS.gene43672:CDS | 45.0% | |
| GCTTACTTGGATAGAAGGCT+TGG | + | chr5.1:52908392-52908411 | MS.gene43672:CDS | 45.0% | |
| GGATGTTTCCTGAAGACCAA+AGG | + | chr5.1:52909771-52909790 | MS.gene43672:CDS | 45.0% | |
| GGTTACTTATGGTTGCGTTG+TGG | + | chr5.1:52908367-52908386 | MS.gene43672:CDS | 45.0% | |
| TAGCCCACTTAAATTGGCAC+CGG | + | chr5.1:52908849-52908868 | MS.gene43672:intron | 45.0% | |
| TCAGGAAAACCAAGAGAAGG+AGG | + | chr5.1:52909255-52909274 | MS.gene43672:intron | 45.0% | |
| TGAGAAGGTGGTTCCTGATT+TGG | + | chr5.1:52908346-52908365 | MS.gene43672:CDS | 45.0% | |
| TTCAGCACAAATGTCCATCC+AGG | - | chr5.1:52909810-52909829 | None:intergenic | 45.0% | |
| TTCTCGAAAACGCCAAAGCA+CGG | - | chr5.1:52908280-52908299 | None:intergenic | 45.0% | |
| TTGCGTTGTGGATGCTTACT+TGG | + | chr5.1:52908379-52908398 | MS.gene43672:CDS | 45.0% | |
| TTGGCCCTTGAAATCTTTGG+TGG | + | chr5.1:52909583-52909602 | MS.gene43672:intron | 45.0% | |
| ! | ACTAGTTCTCCTCCTTCTCT+TGG | - | chr5.1:52909267-52909286 | None:intergenic | 45.0% |
| ! | TCTCCGGTGCCAATTTAAGT+GGG | - | chr5.1:52908855-52908874 | None:intergenic | 45.0% |
| ! | TTTCGAGAATGGCGCTGTTT+TGG | + | chr5.1:52908291-52908310 | MS.gene43672:CDS | 45.0% |
| !! | CAGATACAAAAGGCTTGCTG+TGG | + | chr5.1:52909432-52909451 | MS.gene43672:intron | 45.0% |
| !! | GGCAAGTAGGTTTGGTCTTA+AGG | + | chr5.1:52909042-52909061 | MS.gene43672:intron | 45.0% |
| !! | TGCTTTGGCGTTTTCGAGAA+TGG | + | chr5.1:52908280-52908299 | MS.gene43672:CDS | 45.0% |
| !! | TTCGAGAATGGCGCTGTTTT+GGG | + | chr5.1:52908292-52908311 | MS.gene43672:CDS | 45.0% |
| AGACCAAACCTACTTGCCTG+TGG | - | chr5.1:52909040-52909059 | None:intergenic | 50.0% | |
| AGGACTTACTTAGTCGCCTC+CGG | + | chr5.1:52909683-52909702 | MS.gene43672:intron | 50.0% | |
| AGGTTGTGCCAGAGAAAGAG+AGG | + | chr5.1:52909222-52909241 | MS.gene43672:intron | 50.0% | |
| ATACTCACAGCTCCTCAGAG+GGG | - | chr5.1:52909133-52909152 | None:intergenic | 50.0% | |
| GAATCGAACCTGAGACCTCA+AGG | + | chr5.1:52908875-52908894 | MS.gene43672:intron | 50.0% | |
| GACGGATCCGTTTGTGTTTG+AGG | + | chr5.1:52908472-52908491 | MS.gene43672:CDS | 50.0% | |
| GCACAAATGTCCATCCAGGT+TGG | - | chr5.1:52909806-52909825 | None:intergenic | 50.0% | |
| GGTCTTCAGGAAACATCCCT+AGG | - | chr5.1:52909769-52909788 | None:intergenic | 50.0% | |
| GTCTCAGGTTCGATTCTCTC+CGG | - | chr5.1:52908871-52908890 | None:intergenic | 50.0% | |
| GTTCAGTGCTTGCTCACCAT+TGG | + | chr5.1:52909564-52909583 | MS.gene43672:intron | 50.0% | |
| TGGATGTGGATGTTTGTCCG+CGG | + | chr5.1:52908444-52908463 | MS.gene43672:CDS | 50.0% | |
| TGTTTGTCCGCGGTTGTTGA+CGG | + | chr5.1:52908454-52908473 | MS.gene43672:CDS | 50.0% | |
| TTGCTTGGCCTCTCTTTCTC+TGG | - | chr5.1:52909233-52909252 | None:intergenic | 50.0% | |
| ! | CTCTCCGGTGCCAATTTAAG+TGG | - | chr5.1:52908856-52908875 | None:intergenic | 50.0% |
| ! | TCTCAGCAAGCAGCCTTTTG+TGG | + | chr5.1:52909609-52909628 | MS.gene43672:intron | 50.0% |
| ! | TCTGGTCTATGGAAGTGTGC+AGG | + | chr5.1:52909399-52909418 | MS.gene43672:intron | 50.0% |
| AACGGATCCGTCAACAACCG+CGG | - | chr5.1:52908464-52908483 | None:intergenic | 55.0% | |
| ACAGTTTCAGAGCCCCTCTG+AGG | + | chr5.1:52909118-52909137 | MS.gene43672:intron | 55.0% | |
| GCACCACAGGCAAGTAGGTT+TGG | + | chr5.1:52909034-52909053 | MS.gene43672:intron | 55.0% | |
| TCGAACCTGAGACCTCAAGG+AGG | + | chr5.1:52908878-52908897 | MS.gene43672:intron | 55.0% | |
| ! | GGAAGTGTGCAGGAGCATAG+TGG | + | chr5.1:52909409-52909428 | MS.gene43672:intron | 55.0% |
| GTGCTCCTCCTTGAGGTCTC+AGG | - | chr5.1:52908886-52908905 | None:intergenic | 60.0% | |
| GTGCTGCACCACAGGCAAGT+AGG | + | chr5.1:52909029-52909048 | MS.gene43672:intron | 60.0% | |
| TGTGGTGCAGCACCAGGTGT+AGG | - | chr5.1:52909022-52909041 | None:intergenic | 60.0% | |
| ! | TGGGAGTGTGCTCCTCCTTG+AGG | - | chr5.1:52908893-52908912 | None:intergenic | 60.0% |
| !! | TACACCTGGTGCTGCACCAC+AGG | + | chr5.1:52909021-52909040 | MS.gene43672:intron | 60.0% |
| CTTGCCTGTGGTGCAGCACC+AGG | - | chr5.1:52909028-52909047 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 52908233 | 52910036 | 52908233 | ID=MS.gene43672 |
| chr5.1 | mRNA | 52908233 | 52910036 | 52908233 | ID=MS.gene43672.t1;Parent=MS.gene43672 |
| chr5.1 | exon | 52908233 | 52908500 | 52908233 | ID=MS.gene43672.t1.exon1;Parent=MS.gene43672.t1 |
| chr5.1 | CDS | 52908233 | 52908500 | 52908233 | ID=cds.MS.gene43672.t1;Parent=MS.gene43672.t1 |
| chr5.1 | exon | 52909711 | 52909860 | 52909711 | ID=MS.gene43672.t1.exon2;Parent=MS.gene43672.t1 |
| chr5.1 | CDS | 52909711 | 52909860 | 52909711 | ID=cds.MS.gene43672.t1;Parent=MS.gene43672.t1 |
| chr5.1 | exon | 52909957 | 52910036 | 52909957 | ID=MS.gene43672.t1.exon3;Parent=MS.gene43672.t1 |
| chr5.1 | CDS | 52909957 | 52910036 | 52909957 | ID=cds.MS.gene43672.t1;Parent=MS.gene43672.t1 |
| Gene Sequence |
| Protein sequence |
