Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43792.t1 | XP_003615614.1 | 91.6 | 238 | 20 | 0 | 1 | 238 | 1 | 238 | 7.10E-105 | 391 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43792.t1 | Q9SD61 | 70.9 | 165 | 48 | 0 | 1 | 165 | 1 | 165 | 3.4e-63 | 243.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43792.t1 | G7K6D4 | 91.6 | 238 | 20 | 0 | 1 | 238 | 1 | 238 | 5.1e-105 | 391.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43792 | MS.gene050322 | PPI |
| MS.gene43792 | MS.gene007227 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43792.t1 | MTR_5g070100 | 89.663 | 416 | 20 | 1 | 1 | 416 | 1 | 393 | 0.0 | 698 |
| MS.gene43792.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 412 | 483 | 1.89e-11 | 66.2 |
| MS.gene43792.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 410 | 481 | 2.15e-11 | 66.2 |
| MS.gene43792.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 412 | 483 | 2.29e-11 | 65.9 |
| MS.gene43792.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 410 | 481 | 3.46e-11 | 65.5 |
| MS.gene43792.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 412 | 483 | 3.69e-11 | 65.5 |
| MS.gene43792.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 410 | 481 | 7.33e-11 | 64.3 |
| MS.gene43792.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 412 | 483 | 7.95e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43792.t1 | AT3G47120 | 66.827 | 208 | 67 | 1 | 1 | 206 | 1 | 208 | 5.96e-97 | 292 |
| MS.gene43792.t1 | AT3G47120 | 78.182 | 165 | 36 | 0 | 1 | 165 | 1 | 165 | 1.31e-94 | 288 |
| MS.gene43792.t1 | AT4G36690 | 30.534 | 131 | 86 | 2 | 18 | 148 | 343 | 468 | 5.25e-13 | 71.2 |
| MS.gene43792.t1 | AT4G36690 | 30.534 | 131 | 86 | 2 | 18 | 148 | 321 | 446 | 5.51e-13 | 70.9 |
| MS.gene43792.t1 | AT4G36690 | 30.534 | 131 | 86 | 2 | 18 | 148 | 343 | 468 | 6.78e-13 | 70.9 |
| MS.gene43792.t1 | AT4G36690 | 30.534 | 131 | 86 | 2 | 18 | 148 | 343 | 468 | 8.79e-13 | 70.5 |
| MS.gene43792.t1 | AT5G19960 | 35.443 | 79 | 50 | 1 | 34 | 112 | 5 | 82 | 1.52e-11 | 65.9 |
| MS.gene43792.t1 | AT5G64200 | 42.105 | 76 | 44 | 0 | 34 | 109 | 14 | 89 | 5.08e-11 | 63.9 |
| MS.gene43792.t1 | AT5G64200 | 42.105 | 76 | 44 | 0 | 34 | 109 | 14 | 89 | 5.08e-11 | 63.9 |
| MS.gene43792.t1 | AT1G60900 | 38.889 | 72 | 44 | 0 | 38 | 109 | 377 | 448 | 8.92e-11 | 64.3 |
Find 105 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTTTCAGGTAGGATTATT+AGG | 0.141562 | 5.1:-54531610 | MS.gene43792:CDS |
| GCCATACCTTCTTTCTTTAC+TGG | 0.145333 | 5.1:+54528890 | None:intergenic |
| AGGCGGGATGTTGATGATTT+TGG | 0.164510 | 5.1:-54528399 | MS.gene43792:CDS |
| AGGCGGGATGTTGATGATTT+TGG | 0.164510 | 5.1:-54528468 | MS.gene43792:CDS |
| CTGAATGGAGCTCAGGTTTC+AGG | 0.203125 | 5.1:-54531623 | MS.gene43792:CDS |
| GTCAGAATCATTTCTTCCTT+TGG | 0.232167 | 5.1:+54528230 | None:intergenic |
| CTGAGCCAAGAGATCATAAA+AGG | 0.251327 | 5.1:-54528578 | MS.gene43792:CDS |
| GAATCTCTATCTCTAGTTTC+TGG | 0.272752 | 5.1:+54528846 | None:intergenic |
| CTCTCTTCTATCATTTCTCT+TGG | 0.283326 | 5.1:+54528779 | None:intergenic |
| CTTCTATCATTTCTCTTGGA+TGG | 0.294203 | 5.1:+54528783 | None:intergenic |
| CTGATCTTAGAGAAGATAAA+AGG | 0.316160 | 5.1:-54528428 | MS.gene43792:CDS |
| CCATACCTTCTTTCTTTACT+GGG | 0.318208 | 5.1:+54528891 | None:intergenic |
| CAAGGAATGGTTATGATGAT+AGG | 0.321506 | 5.1:-54528605 | MS.gene43792:CDS |
| CTCCTTTGCCGATCTTCTCT+TGG | 0.324973 | 5.1:+54528642 | None:intergenic |
| CACGAGTACACTCCCCTCTT+TGG | 0.331022 | 5.1:+54531495 | None:intergenic |
| GGTTTCAGGTAGGATTATTA+GGG | 0.354453 | 5.1:-54531609 | MS.gene43792:CDS |
| TCTCAATTGCCATTACCTTC+TGG | 0.356668 | 5.1:+54528188 | None:intergenic |
| TTCTATCATTTCTCTTGGAT+GGG | 0.358687 | 5.1:+54528784 | None:intergenic |
| TTGTAGAGAGCTGCAAATAC+TGG | 0.385773 | 5.1:-54528963 | MS.gene43792:intron |
| ACATAAGCGAAGACGCTTCA+TGG | 0.386973 | 5.1:-54532358 | MS.gene43792:CDS |
| AAGAGGAAGCAAAGCAGAAA+AGG | 0.403194 | 5.1:-54531544 | MS.gene43792:CDS |
| GGAGGCCCGTGGTGTTTGTC+GGG | 0.415526 | 5.1:-54531522 | MS.gene43792:CDS |
| CTAGTTTCTGGAATACGATC+TGG | 0.419183 | 5.1:+54528858 | None:intergenic |
| CAAGAGAAACACACGGTAGC+AGG | 0.422317 | 5.1:-54528368 | MS.gene43792:CDS |
| GGGAGGCCCGTGGTGTTTGT+CGG | 0.430962 | 5.1:-54531523 | MS.gene43792:CDS |
| GGTCAAGAGAAGATCATGAT+AGG | 0.447825 | 5.1:-54528299 | MS.gene43792:CDS |
| TCATCAACATCCCGCCTACT+TGG | 0.448056 | 5.1:+54528405 | None:intergenic |
| TCATCAACATCCCGCCTACT+TGG | 0.449138 | 5.1:+54528474 | None:intergenic |
| TGATCAGAATCTCTTGACTT+AGG | 0.458844 | 5.1:+54528513 | None:intergenic |
| GGTGATAACGGGATTGCAAA+AGG | 0.465841 | 5.1:-54528936 | MS.gene43792:CDS |
| CTTGTAAGAGACAAAGGTAC+TGG | 0.467775 | 5.1:-54532041 | MS.gene43792:CDS |
| GAGAGCTGCAAATACTGGTT+GGG | 0.469783 | 5.1:-54528958 | MS.gene43792:CDS |
| ATACTGGTTGGGGTGATAAC+GGG | 0.475497 | 5.1:-54528947 | MS.gene43792:CDS |
| AATACTGGTTGGGGTGATAA+CGG | 0.477693 | 5.1:-54528948 | MS.gene43792:CDS |
| GGGGAGTGTACTCGTGGAGC+TGG | 0.482249 | 5.1:-54531488 | MS.gene43792:CDS |
| TCATCATCTTGATAGTCTCT+TGG | 0.486677 | 5.1:+54528678 | None:intergenic |
| TTCTTTGATCTTCATATGCT+AGG | 0.490743 | 5.1:+54531997 | None:intergenic |
| GTGATAACGGGATTGCAAAA+GGG | 0.493742 | 5.1:-54528935 | MS.gene43792:CDS |
| GAGATCATAAAAGGGAAGAC+AGG | 0.495058 | 5.1:-54528569 | MS.gene43792:CDS |
| AGATGGCGATAGTAAATTTG+TGG | 0.496993 | 5.1:-54528736 | MS.gene43792:CDS |
| GGAGAGAAGAAATGAGATCA+AGG | 0.498844 | 5.1:-54528623 | MS.gene43792:CDS |
| TGCGCTTCACCAGTGTTAGC+GGG | 0.500198 | 5.1:+54532414 | None:intergenic |
| GATGGAGGAGGAAGATGAAG+AGG | 0.505631 | 5.1:-54531561 | MS.gene43792:CDS |
| AGATAATCTGAATGGAGCTC+AGG | 0.511594 | 5.1:-54531630 | MS.gene43792:CDS |
| CAAAGGTACTGGAAAATCAA+AGG | 0.512659 | 5.1:-54532030 | MS.gene43792:CDS |
| AGATAAAAGGCCAAGTAGGC+GGG | 0.513506 | 5.1:-54528415 | MS.gene43792:CDS |
| CCCAGTAAAGAAAGAAGGTA+TGG | 0.517066 | 5.1:-54528891 | MS.gene43792:CDS |
| TTTGTCGGGCTTTCCAAAGA+GGG | 0.528141 | 5.1:-54531508 | MS.gene43792:CDS |
| TTCAGGTAGGATTATTAGGG+TGG | 0.532632 | 5.1:-54531606 | MS.gene43792:CDS |
| GATGGCGATAGTAAATTTGT+GGG | 0.534981 | 5.1:-54528735 | MS.gene43792:CDS |
| AAGGAATGGTTATGATGATA+GGG | 0.535419 | 5.1:-54528604 | MS.gene43792:CDS |
| AGAAGCACTAATCTTGCTGT+TGG | 0.536662 | 5.1:-54531978 | MS.gene43792:intron |
| AAAGGTACTGGAAAATCAAA+GGG | 0.537719 | 5.1:-54532029 | MS.gene43792:CDS |
| CTGACCAAAGAGAAGAAAAG+AGG | 0.537828 | 5.1:-54528212 | MS.gene43792:CDS |
| TAAATATAAGAAGATGGAGG+AGG | 0.542000 | 5.1:-54531573 | MS.gene43792:CDS |
| TGATAACGGGATTGCAAAAG+GGG | 0.543460 | 5.1:-54528934 | MS.gene43792:CDS |
| GAGAGGAAAAGATGTTGCGA+AGG | 0.544047 | 5.1:-54528761 | MS.gene43792:CDS |
| TGTTGATAAATATAAGAAGA+TGG | 0.544702 | 5.1:-54531579 | MS.gene43792:CDS |
| ATGCGCTTCACCAGTGTTAG+CGG | 0.545822 | 5.1:+54532413 | None:intergenic |
| GGGGATAATGACAAATATGA+TGG | 0.546189 | 5.1:-54528915 | MS.gene43792:CDS |
| GGTGATATCCAGGTATGGGG+AGG | 0.553611 | 5.1:-54532078 | MS.gene43792:intron |
| AGAGGAAGCAAAGCAGAAAA+GGG | 0.556582 | 5.1:-54531543 | MS.gene43792:CDS |
| AACAATTGCCAAGAGAAGAT+CGG | 0.556675 | 5.1:-54528650 | MS.gene43792:CDS |
| AGATAAAAGACCAAGTAGGC+GGG | 0.557243 | 5.1:-54528484 | MS.gene43792:CDS |
| CACACGGTAGCAGGGAAGAG+AGG | 0.558042 | 5.1:-54528359 | MS.gene43792:CDS |
| AGAGAGCTGCAAATACTGGT+TGG | 0.561675 | 5.1:-54528959 | MS.gene43792:CDS |
| GAGAAGAAAAGAGGTCCAGA+AGG | 0.562940 | 5.1:-54528203 | MS.gene43792:CDS |
| ATTCCCTTCGATTTCACCGA+GGG | 0.563908 | 5.1:-54532293 | MS.gene43792:CDS |
| GAAGAAATGAGATCAAGGAA+TGG | 0.564228 | 5.1:-54528618 | MS.gene43792:CDS |
| GAGAAGATAAAAGGCCAAGT+AGG | 0.565298 | 5.1:-54528419 | MS.gene43792:CDS |
| AAGAGAAACACACGGTAGCA+GGG | 0.569250 | 5.1:-54528367 | MS.gene43792:CDS |
| TGAGCCAAGAGATCATAAAA+GGG | 0.569269 | 5.1:-54528577 | MS.gene43792:CDS |
| ATGGTCCCAGTAAAGAAAGA+AGG | 0.572440 | 5.1:-54528896 | MS.gene43792:CDS |
| ATTAATCTTGTAAGAGACAA+AGG | 0.574059 | 5.1:-54532047 | MS.gene43792:CDS |
| AAAAGAGGTCCAGAAGGTAA+TGG | 0.576819 | 5.1:-54528197 | None:intergenic |
| CAGAGCCCGTGAAAATGAGA+TGG | 0.577175 | 5.1:-54528817 | MS.gene43792:CDS |
| GTTTGTCGGGCTTTCCAAAG+AGG | 0.577376 | 5.1:-54531509 | MS.gene43792:CDS |
| ATCACCCTCGGTGAAATCGA+AGG | 0.587004 | 5.1:+54532289 | None:intergenic |
| AGAGCTGCAAATACTGGTTG+GGG | 0.591634 | 5.1:-54528957 | MS.gene43792:CDS |
| AAGATAAAAGGCCAAGTAGG+CGG | 0.592227 | 5.1:-54528416 | MS.gene43792:CDS |
| TGTGTCACAGATAATCTGAA+TGG | 0.593295 | 5.1:-54531638 | MS.gene43792:intron |
| GAGAAGATAAAAGACCAAGT+AGG | 0.594924 | 5.1:-54528488 | MS.gene43792:CDS |
| TGCCAAGAGAAGATCGGCAA+AGG | 0.602431 | 5.1:-54528644 | MS.gene43792:CDS |
| TTTGGTGATATCCAGGTATG+GGG | 0.602610 | 5.1:-54532081 | MS.gene43792:intron |
| AAGATGTTGCGAAGGCAAGA+TGG | 0.607367 | 5.1:-54528753 | MS.gene43792:CDS |
| TCATGATCTTCTCTTGACCT+CGG | 0.607853 | 5.1:+54528303 | None:intergenic |
| TTGTCGGGCTTTCCAAAGAG+GGG | 0.608582 | 5.1:-54531507 | MS.gene43792:CDS |
| TCACCCTCGGTGAAATCGAA+GGG | 0.609691 | 5.1:+54532290 | None:intergenic |
| GGAAGCAAAGCAGAAAAGGG+AGG | 0.609716 | 5.1:-54531540 | MS.gene43792:CDS |
| CAAGAGAAATGATAGAAGAG+AGG | 0.610710 | 5.1:-54528778 | MS.gene43792:CDS |
| GGACATGAACCCGCTAACAC+TGG | 0.614970 | 5.1:-54532423 | None:intergenic |
| AAGATAAAAGACCAAGTAGG+CGG | 0.618731 | 5.1:-54528485 | MS.gene43792:CDS |
| GAAAGCCCGACAAACACCAC+GGG | 0.618848 | 5.1:+54531517 | None:intergenic |
| ATCATAAAAGGGAAGACAGG+AGG | 0.621506 | 5.1:-54528566 | MS.gene43792:CDS |
| AACAGCGATCACATCACCCT+CGG | 0.630240 | 5.1:+54532277 | None:intergenic |
| ACTGATCGATCTGAATCCAA+AGG | 0.632548 | 5.1:-54528246 | MS.gene43792:CDS |
| CAAAGAGGGGAGTGTACTCG+TGG | 0.640039 | 5.1:-54531494 | MS.gene43792:CDS |
| GGAAAGCCCGACAAACACCA+CGG | 0.645236 | 5.1:+54531516 | None:intergenic |
| ACCACCGACGAAAACATAAG+CGG | 0.664303 | 5.1:+54532316 | None:intergenic |
| TGATAAATATAAGAAGATGG+AGG | 0.665787 | 5.1:-54531576 | MS.gene43792:CDS |
| ATGGAGCTCAGGTTTCAGGT+AGG | 0.666007 | 5.1:-54531619 | MS.gene43792:CDS |
| AAGCAGAAAAGGGAGGCCCG+TGG | 0.687506 | 5.1:-54531533 | MS.gene43792:CDS |
| TATTCCCTTCGATTTCACCG+AGG | 0.720373 | 5.1:-54532294 | MS.gene43792:CDS |
| CTGACGATGAATCTATGCCG+AGG | 0.725370 | 5.1:-54528320 | MS.gene43792:CDS |
| AGCAAGTCAAGAGAAACACA+CGG | 0.752914 | 5.1:-54528375 | MS.gene43792:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAAATTTAATTTAA+TGG | - | chr5.1:54530483-54530502 | MS.gene43792:intron | 0.0% |
| !! | TTCAAAAAATAATCAAATAT+CGG | - | chr5.1:54530123-54530142 | MS.gene43792:intron | 10.0% |
| !!! | TGGATATTATTTATATTTTA+AGG | - | chr5.1:54529768-54529787 | MS.gene43792:intron | 10.0% |
| !!! | TTTAAATTTAATTTAATGGT+TGG | - | chr5.1:54530487-54530506 | MS.gene43792:intron | 10.0% |
| !! | TATAAATAATATCCACTATA+AGG | + | chr5.1:54529763-54529782 | None:intergenic | 15.0% |
| !!! | AAAATATAGTTTAGAATTAC+AGG | + | chr5.1:54528680-54528699 | None:intergenic | 15.0% |
| !!! | ACCAAAATGTTTTAAAAATA+GGG | + | chr5.1:54529983-54530002 | None:intergenic | 15.0% |
| !! | AAAAATAATATTCCTGGAAA+GGG | - | chr5.1:54530844-54530863 | MS.gene43792:intron | 20.0% |
| !! | ACAAAGAAATTCATTAAAAC+AGG | + | chr5.1:54529580-54529599 | None:intergenic | 20.0% |
| !! | ATTGAAAAGTTCTTCTTTAT+AGG | + | chr5.1:54530312-54530331 | None:intergenic | 20.0% |
| !! | TACTTACAAAAGATACATTA+GGG | + | chr5.1:54528749-54528768 | None:intergenic | 20.0% |
| !! | TGAACAAATTACATGAATAA+TGG | + | chr5.1:54530107-54530126 | None:intergenic | 20.0% |
| !! | TGATAATTCAAAATACTTTG+TGG | + | chr5.1:54529205-54529224 | None:intergenic | 20.0% |
| !! | TGTCTAAATTATCTAACATT+TGG | + | chr5.1:54529725-54529744 | None:intergenic | 20.0% |
| !! | TTACTTACAAAAGATACATT+AGG | + | chr5.1:54528750-54528769 | None:intergenic | 20.0% |
| !!! | AATAGGAATATTTTCACAAT+AGG | + | chr5.1:54530958-54530977 | None:intergenic | 20.0% |
| !!! | AATATATTTTTGCTAATCAG+TGG | + | chr5.1:54530358-54530377 | None:intergenic | 20.0% |
| !!! | ACCCTATTTTTAAAACATTT+TGG | - | chr5.1:54529979-54529998 | MS.gene43792:intron | 20.0% |
| !!! | ACTACTTTTACTTTAATGTA+TGG | + | chr5.1:54530400-54530419 | None:intergenic | 20.0% |
| !!! | ATCTTTTGTAAGTAATTGTA+TGG | - | chr5.1:54528755-54528774 | MS.gene43792:CDS | 20.0% |
| !!! | ATTGATTGATAGTATCTTTA+TGG | - | chr5.1:54528446-54528465 | MS.gene43792:CDS | 20.0% |
| !!! | CACCAAAATGTTTTAAAAAT+AGG | + | chr5.1:54529984-54530003 | None:intergenic | 20.0% |
| !!! | TATGTTATAAAATTTGCTGT+TGG | - | chr5.1:54531545-54531564 | MS.gene43792:CDS | 20.0% |
| !!! | TGTTGATAAATATAAGAAGA+TGG | - | chr5.1:54529040-54529059 | MS.gene43792:intron | 20.0% |
| !!! | TTTAAGGTAAATGATAACTA+GGG | - | chr5.1:54529784-54529803 | MS.gene43792:intron | 20.0% |
| !!! | TTTGATTATCTGTTTTTTTC+AGG | - | chr5.1:54528921-54528940 | MS.gene43792:CDS | 20.0% |
| !!! | TTTTAAAAATAGGGTCAATT+TGG | + | chr5.1:54529974-54529993 | None:intergenic | 20.0% |
| !!! | TTTTAAGGTAAATGATAACT+AGG | - | chr5.1:54529783-54529802 | MS.gene43792:intron | 20.0% |
| !!! | TTTTGAGTTTATAATTGTAG+TGG | - | chr5.1:54531309-54531328 | MS.gene43792:intron | 20.0% |
| ! | AAAATAATATTCCTGGAAAG+GGG | - | chr5.1:54530845-54530864 | MS.gene43792:intron | 25.0% |
| ! | AAGAAATGAATATATTCCAG+AGG | - | chr5.1:54530659-54530678 | MS.gene43792:intron | 25.0% |
| ! | ACACATACACATATAATTCT+TGG | - | chr5.1:54529600-54529619 | MS.gene43792:intron | 25.0% |
| ! | ACATCATTCAATAGTCAATT+CGG | + | chr5.1:54528813-54528832 | None:intergenic | 25.0% |
| ! | ACGTAGAAAAATAATATTCC+TGG | - | chr5.1:54530838-54530857 | MS.gene43792:intron | 25.0% |
| ! | ACTATATATGACTTAAGAAC+TGG | + | chr5.1:54530575-54530594 | None:intergenic | 25.0% |
| ! | AGAACTGAAAACATACAATA+AGG | + | chr5.1:54531616-54531635 | None:intergenic | 25.0% |
| ! | ATTAATCTTGTAAGAGACAA+AGG | - | chr5.1:54528572-54528591 | MS.gene43792:CDS | 25.0% |
| ! | ATTAGGTGAAATAACTGTAT+AGG | + | chr5.1:54529629-54529648 | None:intergenic | 25.0% |
| ! | CATTTCTTTCAAGATGAATT+TGG | + | chr5.1:54530647-54530666 | None:intergenic | 25.0% |
| ! | GAAAAATAATATTCCTGGAA+AGG | - | chr5.1:54530843-54530862 | MS.gene43792:intron | 25.0% |
| ! | GCATTATATGAAAAGCTATT+AGG | + | chr5.1:54529646-54529665 | None:intergenic | 25.0% |
| ! | GGATTGATAAAATGACAATT+AGG | - | chr5.1:54530508-54530527 | MS.gene43792:intron | 25.0% |
| ! | GTAGTTATATAACCTTATAG+TGG | - | chr5.1:54529748-54529767 | MS.gene43792:intron | 25.0% |
| ! | GTGATATTACTTTCATGATT+AGG | - | chr5.1:54529695-54529714 | MS.gene43792:intron | 25.0% |
| ! | TCAAGTAATAAGAACTTAGA+AGG | + | chr5.1:54531350-54531369 | None:intergenic | 25.0% |
| ! | TGATAAATATAAGAAGATGG+AGG | - | chr5.1:54529043-54529062 | MS.gene43792:intron | 25.0% |
| !!! | TTGTAGTTTTGATACATTCA+AGG | - | chr5.1:54528847-54528866 | MS.gene43792:CDS | 25.0% |
| !!! | TTTGAAGATGACAAGTTTTT+TGG | - | chr5.1:54528514-54528533 | MS.gene43792:CDS | 25.0% |
| AAAACATACAATAAGGTAGC+AGG | + | chr5.1:54531609-54531628 | None:intergenic | 30.0% | |
| AAGGAATGGTTATGATGATA+GGG | - | chr5.1:54532015-54532034 | MS.gene43792:CDS | 30.0% | |
| ACAACATGACACACATTTAA+GGG | - | chr5.1:54528879-54528898 | MS.gene43792:CDS | 30.0% | |
| ACATGATTCTACAGTCAAAT+TGG | + | chr5.1:54529677-54529696 | None:intergenic | 30.0% | |
| ACTTCTCTGAATATGTTCTT+AGG | - | chr5.1:54531149-54531168 | MS.gene43792:intron | 30.0% | |
| ATCTTGAAAGAATGAAACCT+AGG | - | chr5.1:54530597-54530616 | MS.gene43792:intron | 30.0% | |
| CTGAATTGCTTTGTAATGTT+TGG | - | chr5.1:54528953-54528972 | MS.gene43792:CDS | 30.0% | |
| CTTCTCTGAATATGTTCTTA+GGG | - | chr5.1:54531150-54531169 | MS.gene43792:intron | 30.0% | |
| TAAATATAAGAAGATGGAGG+AGG | - | chr5.1:54529046-54529065 | MS.gene43792:intron | 30.0% | |
| TATGCTGGTAATACATGAAT+TGG | + | chr5.1:54530774-54530793 | None:intergenic | 30.0% | |
| TGAAAGTTTGTATTGAGAAG+TGG | - | chr5.1:54530273-54530292 | MS.gene43792:intron | 30.0% | |
| TTCGTTGTGAGTTATAACTT+GGG | + | chr5.1:54531263-54531282 | None:intergenic | 30.0% | |
| TTCTATCATTTCTCTTGGAT+GGG | + | chr5.1:54531838-54531857 | None:intergenic | 30.0% | |
| TTCTTTGATCTTCATATGCT+AGG | + | chr5.1:54528625-54528644 | None:intergenic | 30.0% | |
| TTGATTATGTATGTTATCGC+TGG | - | chr5.1:54528699-54528718 | MS.gene43792:CDS | 30.0% | |
| TTTCGTTGTGAGTTATAACT+TGG | + | chr5.1:54531264-54531283 | None:intergenic | 30.0% | |
| ! | AGAGGAAGAATTTTATGTGA+AGG | - | chr5.1:54530910-54530929 | MS.gene43792:intron | 30.0% |
| ! | AGGAAGAATTTTATGTGAAG+GGG | - | chr5.1:54530912-54530931 | MS.gene43792:intron | 30.0% |
| ! | CACATAAAGTTTTACATCGA+CGG | + | chr5.1:54528424-54528443 | None:intergenic | 30.0% |
| ! | CTAATTCCATCTCATTTTCA+CGG | + | chr5.1:54531811-54531830 | None:intergenic | 30.0% |
| ! | GAGGAAGAATTTTATGTGAA+GGG | - | chr5.1:54530911-54530930 | MS.gene43792:intron | 30.0% |
| ! | GTTGTACACAAGTTTTTCTT+AGG | - | chr5.1:54529385-54529404 | MS.gene43792:intron | 30.0% |
| ! | TAATTCCATCTCATTTTCAC+GGG | + | chr5.1:54531810-54531829 | None:intergenic | 30.0% |
| !! | AAAGGTACTGGAAAATCAAA+GGG | - | chr5.1:54528590-54528609 | MS.gene43792:CDS | 30.0% |
| !!! | GATGACAAGTTTTTTGGTTT+TGG | - | chr5.1:54528520-54528539 | MS.gene43792:CDS | 30.0% |
| AAACTCCTAAACAAAGCCTA+AGG | - | chr5.1:54531097-54531116 | MS.gene43792:intron | 35.0% | |
| AACAATTGCCAAGAGAAGAT+CGG | - | chr5.1:54531969-54531988 | MS.gene43792:intron | 35.0% | |
| AACTCCTAAACAAAGCCTAA+GGG | - | chr5.1:54531098-54531117 | MS.gene43792:intron | 35.0% | |
| AAGATAAAAGACCAAGTAGG+CGG | - | chr5.1:54532134-54532153 | MS.gene43792:intron | 35.0% | |
| AGATGGCGATAGTAAATTTG+TGG | - | chr5.1:54531883-54531902 | MS.gene43792:intron | 35.0% | |
| CAAGAGAAATGATAGAAGAG+AGG | - | chr5.1:54531841-54531860 | MS.gene43792:intron | 35.0% | |
| CAAGGAATGGTTATGATGAT+AGG | - | chr5.1:54532014-54532033 | MS.gene43792:CDS | 35.0% | |
| CCATACCTTCTTTCTTTACT+GGG | + | chr5.1:54531731-54531750 | None:intergenic | 35.0% | |
| CCTCAATCAAATAAGCCAAA+AGG | + | chr5.1:54529331-54529350 | None:intergenic | 35.0% | |
| CTCTCTTCTATCATTTCTCT+TGG | + | chr5.1:54531843-54531862 | None:intergenic | 35.0% | |
| CTTCTATCATTTCTCTTGGA+TGG | + | chr5.1:54531839-54531858 | None:intergenic | 35.0% | |
| GAAGAAATGAGATCAAGGAA+TGG | - | chr5.1:54532001-54532020 | MS.gene43792:CDS | 35.0% | |
| GAATATGTTCTTAGGGAGTT+AGG | - | chr5.1:54531157-54531176 | MS.gene43792:intron | 35.0% | |
| GACAACATGACACACATTTA+AGG | - | chr5.1:54528878-54528897 | MS.gene43792:CDS | 35.0% | |
| GAGAAGATAAAAGACCAAGT+AGG | - | chr5.1:54532131-54532150 | MS.gene43792:intron | 35.0% | |
| GAGTTTACAAGGGTCTATTT+AGG | + | chr5.1:54530729-54530748 | None:intergenic | 35.0% | |
| GATGGCGATAGTAAATTTGT+GGG | - | chr5.1:54531884-54531903 | MS.gene43792:intron | 35.0% | |
| GGAAGCAAGTTACTGTATTT+AGG | + | chr5.1:54530694-54530713 | None:intergenic | 35.0% | |
| GGGGATAATGACAAATATGA+TGG | - | chr5.1:54531704-54531723 | MS.gene43792:intron | 35.0% | |
| GTCAGAATCATTTCTTCCTT+TGG | + | chr5.1:54532392-54532411 | None:intergenic | 35.0% | |
| TAGACCATAGTAGTCAATAG+CGG | - | chr5.1:54529809-54529828 | MS.gene43792:intron | 35.0% | |
| TATAGCGCTATGACAAATAG+TGG | + | chr5.1:54530152-54530171 | None:intergenic | 35.0% | |
| TGAGCCAAGAGATCATAAAA+GGG | - | chr5.1:54532042-54532061 | MS.gene43792:CDS | 35.0% | |
| TGATCAGAATCTCTTGACTT+AGG | + | chr5.1:54532109-54532128 | None:intergenic | 35.0% | |
| TGTGTCACAGATAATCTGAA+TGG | - | chr5.1:54528981-54529000 | MS.gene43792:intron | 35.0% | |
| TTTGACAAGTATGCTAAGAC+TGG | - | chr5.1:54530544-54530563 | MS.gene43792:intron | 35.0% | |
| ! | ACTCAGTTTTGCTTTGCTTA+TGG | - | chr5.1:54531503-54531522 | MS.gene43792:CDS | 35.0% |
| ! | AGGTTTCAGGTAGGATTATT+AGG | - | chr5.1:54529009-54529028 | MS.gene43792:intron | 35.0% |
| ! | ATTTAGGTCATGTTTTCCTC+TGG | + | chr5.1:54530678-54530697 | None:intergenic | 35.0% |
| ! | GAATCTCTATCTCTAGTTTC+TGG | + | chr5.1:54531776-54531795 | None:intergenic | 35.0% |
| ! | GCTTTGTGATTTTCCGTATT+GGG | - | chr5.1:54530991-54531010 | MS.gene43792:intron | 35.0% |
| ! | GGTTTCAGGTAGGATTATTA+GGG | - | chr5.1:54529010-54529029 | MS.gene43792:intron | 35.0% |
| ! | TCAGAAAGTTGGTTAACAAG+AGG | - | chr5.1:54530892-54530911 | MS.gene43792:intron | 35.0% |
| ! | TCATCATCTTGATAGTCTCT+TGG | + | chr5.1:54531944-54531963 | None:intergenic | 35.0% |
| ! | TCTCTTTTCTTCTCTTCTAC+TGG | + | chr5.1:54531921-54531940 | None:intergenic | 35.0% |
| ! | TCTTCCCTTTTATGATCTCT+TGG | + | chr5.1:54532049-54532068 | None:intergenic | 35.0% |
| ! | TGCTTTGTGATTTTCCGTAT+TGG | - | chr5.1:54530990-54531009 | MS.gene43792:intron | 35.0% |
| ! | TGTTCATATGCAATGCCTTT+TGG | - | chr5.1:54529313-54529332 | MS.gene43792:intron | 35.0% |
| !! | ATTGAGGCGTTTTTGTTTGA+TGG | - | chr5.1:54529344-54529363 | MS.gene43792:intron | 35.0% |
| !! | CAAAGGTACTGGAAAATCAA+AGG | - | chr5.1:54528589-54528608 | MS.gene43792:CDS | 35.0% |
| !! | GCTTTGTTTAGGAGTTTCTA+GGG | + | chr5.1:54531094-54531113 | None:intergenic | 35.0% |
| !! | TTGAGGCGTTTTTGTTTGAT+GGG | - | chr5.1:54529345-54529364 | MS.gene43792:intron | 35.0% |
| !! | TTTTGGTGATATCCAGGTAT+GGG | - | chr5.1:54528537-54528556 | MS.gene43792:CDS | 35.0% |
| !!! | CCTTTTGGCTTATTTGATTG+AGG | - | chr5.1:54529328-54529347 | MS.gene43792:intron | 35.0% |
| !!! | GATTTTGGGACAAATGTTTC+AGG | - | chr5.1:54530799-54530818 | MS.gene43792:intron | 35.0% |
| !!! | TTTTGGTTTTGGTGATATCC+AGG | - | chr5.1:54528531-54528550 | MS.gene43792:CDS | 35.0% |
| AAAGGGGTGAATAGGGTTAT+GGG | - | chr5.1:54530861-54530880 | MS.gene43792:intron | 40.0% | |
| AAGAATGAAACCTAGGCAAG+CGG | - | chr5.1:54530604-54530623 | MS.gene43792:intron | 40.0% | |
| AAGAGGAAGCAAAGCAGAAA+AGG | - | chr5.1:54529075-54529094 | MS.gene43792:intron | 40.0% | |
| AAGATAAAAGGCCAAGTAGG+CGG | - | chr5.1:54532203-54532222 | MS.gene43792:intron | 40.0% | |
| AAGGGTCTATTTAGGTCAGT+CGG | + | chr5.1:54530721-54530740 | None:intergenic | 40.0% | |
| ACTGATCGATCTGAATCCAA+AGG | - | chr5.1:54532373-54532392 | MS.gene43792:CDS | 40.0% | |
| AGAGGAAGCAAAGCAGAAAA+GGG | - | chr5.1:54529076-54529095 | MS.gene43792:intron | 40.0% | |
| AGATAAAAGACCAAGTAGGC+GGG | - | chr5.1:54532135-54532154 | MS.gene43792:intron | 40.0% | |
| AGATAATCTGAATGGAGCTC+AGG | - | chr5.1:54528989-54529008 | MS.gene43792:intron | 40.0% | |
| AGCAAGTCAAGAGAAACACA+CGG | - | chr5.1:54532244-54532263 | MS.gene43792:intron | 40.0% | |
| ATCATAAAAGGGAAGACAGG+AGG | - | chr5.1:54532053-54532072 | MS.gene43792:CDS | 40.0% | |
| ATCCTACTCGTGAGTTTACA+AGG | + | chr5.1:54530740-54530759 | None:intergenic | 40.0% | |
| ATGGTCCCAGTAAAGAAAGA+AGG | - | chr5.1:54531723-54531742 | MS.gene43792:intron | 40.0% | |
| CCCAGTAAAGAAAGAAGGTA+TGG | - | chr5.1:54531728-54531747 | MS.gene43792:intron | 40.0% | |
| CGAACATGCTGAGTTAGATT+TGG | - | chr5.1:54531200-54531219 | MS.gene43792:intron | 40.0% | |
| CTATCCGAGATTGAGTACTA+TGG | - | chr5.1:54530215-54530234 | MS.gene43792:intron | 40.0% | |
| CTATTTAGGTCAGTCGGTAA+GGG | + | chr5.1:54530715-54530734 | None:intergenic | 40.0% | |
| CTGACCAAAGAGAAGAAAAG+AGG | - | chr5.1:54532407-54532426 | MS.gene43792:CDS | 40.0% | |
| CTGAGCCAAGAGATCATAAA+AGG | - | chr5.1:54532041-54532060 | MS.gene43792:CDS | 40.0% | |
| CTGATAGCTATCACCCAATA+CGG | + | chr5.1:54531007-54531026 | None:intergenic | 40.0% | |
| GAGAAGATAAAAGGCCAAGT+AGG | - | chr5.1:54532200-54532219 | MS.gene43792:intron | 40.0% | |
| GAGATCATAAAAGGGAAGAC+AGG | - | chr5.1:54532050-54532069 | MS.gene43792:CDS | 40.0% | |
| GCCATACCTTCTTTCTTTAC+TGG | + | chr5.1:54531732-54531751 | None:intergenic | 40.0% | |
| GGAGAGAAGAAATGAGATCA+AGG | - | chr5.1:54531996-54532015 | MS.gene43792:CDS | 40.0% | |
| GGTCAAGAGAAGATCATGAT+AGG | - | chr5.1:54532320-54532339 | MS.gene43792:CDS | 40.0% | |
| TAGGCCATAGTACTCAATCT+CGG | + | chr5.1:54530222-54530241 | None:intergenic | 40.0% | |
| TAGTACTCAATCTCGGATAG+CGG | + | chr5.1:54530215-54530234 | None:intergenic | 40.0% | |
| TCATGATCTTCTCTTGACCT+CGG | + | chr5.1:54532319-54532338 | None:intergenic | 40.0% | |
| TCCTACTCGTGAGTTTACAA+GGG | + | chr5.1:54530739-54530758 | None:intergenic | 40.0% | |
| TCTATTTAGGTCAGTCGGTA+AGG | + | chr5.1:54530716-54530735 | None:intergenic | 40.0% | |
| TTCAGGTAGGATTATTAGGG+TGG | - | chr5.1:54529013-54529032 | MS.gene43792:intron | 40.0% | |
| TTGTAGAGAGCTGCAAATAC+TGG | - | chr5.1:54531656-54531675 | MS.gene43792:intron | 40.0% | |
| ! | AAGCAGCAGCTTTTCACAAT+AGG | + | chr5.1:54530975-54530994 | None:intergenic | 40.0% |
| ! | AATACTGGTTGGGGTGATAA+CGG | - | chr5.1:54531671-54531690 | MS.gene43792:intron | 40.0% |
| ! | ACCAGCATAGCTGTGATTTT+GGG | - | chr5.1:54530785-54530804 | MS.gene43792:intron | 40.0% |
| ! | CTTGTAAGAGACAAAGGTAC+TGG | - | chr5.1:54528578-54528597 | MS.gene43792:CDS | 40.0% |
| ! | CTTTTATGATCTCTTGGCTC+AGG | + | chr5.1:54532043-54532062 | None:intergenic | 40.0% |
| ! | GATTCCGCTTATGTTTTCGT+CGG | - | chr5.1:54528299-54528318 | MS.gene43792:CDS | 40.0% |
| ! | GCTATTGACTACTATGGTCT+AGG | + | chr5.1:54529810-54529829 | None:intergenic | 40.0% |
| ! | TACCAGCATAGCTGTGATTT+TGG | - | chr5.1:54530784-54530803 | MS.gene43792:intron | 40.0% |
| ! | TGGACCTCTTTTCTTCTCTT+TGG | + | chr5.1:54532414-54532433 | None:intergenic | 40.0% |
| ! | TTTGGAGGGTGAGAAGTATA+AGG | + | chr5.1:54531060-54531079 | None:intergenic | 40.0% |
| ! | TTTGGTGATATCCAGGTATG+GGG | - | chr5.1:54528538-54528557 | MS.gene43792:CDS | 40.0% |
| !! | AGAAGCACTAATCTTGCTGT+TGG | - | chr5.1:54528641-54528660 | MS.gene43792:CDS | 40.0% |
| !! | CTAGTTTCTGGAATACGATC+TGG | + | chr5.1:54531764-54531783 | None:intergenic | 40.0% |
| !! | CTCAGACATTTGTTTCTGCT+TGG | - | chr5.1:54529515-54529534 | MS.gene43792:intron | 40.0% |
| !! | GACATTTGTTTCTGCTTGGT+AGG | - | chr5.1:54529519-54529538 | MS.gene43792:intron | 40.0% |
| !! | GGAAGCTTGTTGTTTGTAGT+AGG | - | chr5.1:54531221-54531240 | MS.gene43792:intron | 40.0% |
| !! | GGCTTTGTTTAGGAGTTTCT+AGG | + | chr5.1:54531095-54531114 | None:intergenic | 40.0% |
| !! | GTGATAACGGGATTGCAAAA+GGG | - | chr5.1:54531684-54531703 | MS.gene43792:intron | 40.0% |
| !! | GTTTTGGTGATATCCAGGTA+TGG | - | chr5.1:54528536-54528555 | MS.gene43792:CDS | 40.0% |
| !! | TGATAACGGGATTGCAAAAG+GGG | - | chr5.1:54531685-54531704 | MS.gene43792:intron | 40.0% |
| AAGAATTACACAGCAGCAGC+AGG | + | chr5.1:54531399-54531418 | None:intergenic | 45.0% | |
| AAGAGAAACACACGGTAGCA+GGG | - | chr5.1:54532252-54532271 | MS.gene43792:intron | 45.0% | |
| AAGATGTTGCGAAGGCAAGA+TGG | - | chr5.1:54531866-54531885 | MS.gene43792:intron | 45.0% | |
| AAGGGGTGAATAGGGTTATG+GGG | - | chr5.1:54530862-54530881 | MS.gene43792:intron | 45.0% | |
| ACATAAGCGAAGACGCTTCA+TGG | - | chr5.1:54528261-54528280 | MS.gene43792:CDS | 45.0% | |
| ACCACCGACGAAAACATAAG+CGG | + | chr5.1:54528306-54528325 | None:intergenic | 45.0% | |
| ACCCTTGTAAACTCACGAGT+AGG | - | chr5.1:54530735-54530754 | MS.gene43792:intron | 45.0% | |
| AGAAAGCAAGCCAGTCATCA+AGG | + | chr5.1:54529497-54529516 | None:intergenic | 45.0% | |
| AGAATGAAACCTAGGCAAGC+GGG | - | chr5.1:54530605-54530624 | MS.gene43792:intron | 45.0% | |
| AGAATTACACAGCAGCAGCA+GGG | + | chr5.1:54531398-54531417 | None:intergenic | 45.0% | |
| AGAGAGCTGCAAATACTGGT+TGG | - | chr5.1:54531660-54531679 | MS.gene43792:intron | 45.0% | |
| AGATAAAAGGCCAAGTAGGC+GGG | - | chr5.1:54532204-54532223 | MS.gene43792:intron | 45.0% | |
| AGGTAGCAGGACAAATGATC+TGG | + | chr5.1:54531596-54531615 | None:intergenic | 45.0% | |
| ATTCCCTTCGATTTCACCGA+GGG | - | chr5.1:54528326-54528345 | MS.gene43792:CDS | 45.0% | |
| ATTCCTGGAAAGGGGTGAAT+AGG | - | chr5.1:54530853-54530872 | MS.gene43792:intron | 45.0% | |
| CAGATCCTCTACTAGTGTCT+AGG | + | chr5.1:54530241-54530260 | None:intergenic | 45.0% | |
| CGCTATGACGATTAGCGTAA+CGG | + | chr5.1:54529860-54529879 | None:intergenic | 45.0% | |
| CGTTACGCTAATCGTCATAG+CGG | - | chr5.1:54529858-54529877 | MS.gene43792:intron | 45.0% | |
| CTAAACAAAGCCTAAGGGCA+GGG | - | chr5.1:54531103-54531122 | MS.gene43792:intron | 45.0% | |
| CTAGACACTAGTAGAGGATC+TGG | - | chr5.1:54530239-54530258 | MS.gene43792:intron | 45.0% | |
| CTGGCAACTAAGCAGAAGAA+GGG | + | chr5.1:54531577-54531596 | None:intergenic | 45.0% | |
| GAAAGGGGTGAATAGGGTTA+TGG | - | chr5.1:54530860-54530879 | MS.gene43792:intron | 45.0% | |
| GAGAAGAAAAGAGGTCCAGA+AGG | - | chr5.1:54532416-54532435 | MS.gene43792:CDS | 45.0% | |
| GAGAGGAAAAGATGTTGCGA+AGG | - | chr5.1:54531858-54531877 | MS.gene43792:intron | 45.0% | |
| GCTAACAGAAGACACATTCG+AGG | - | chr5.1:54528786-54528805 | MS.gene43792:CDS | 45.0% | |
| TATGGCCTAGACACTAGTAG+AGG | - | chr5.1:54530233-54530252 | MS.gene43792:intron | 45.0% | |
| TATTCCCTTCGATTTCACCG+AGG | - | chr5.1:54528325-54528344 | MS.gene43792:CDS | 45.0% | |
| TCCCAAAATCACAGCTATGC+TGG | + | chr5.1:54530789-54530808 | None:intergenic | 45.0% | |
| TCTGGCAACTAAGCAGAAGA+AGG | + | chr5.1:54531578-54531597 | None:intergenic | 45.0% | |
| TTCCTGGAAAGGGGTGAATA+GGG | - | chr5.1:54530854-54530873 | MS.gene43792:intron | 45.0% | |
| TTTGTCGGGCTTTCCAAAGA+GGG | - | chr5.1:54529111-54529130 | MS.gene43792:intron | 45.0% | |
| ! | AGAGCTGCAAATACTGGTTG+GGG | - | chr5.1:54531662-54531681 | MS.gene43792:intron | 45.0% |
| ! | ATACTGGTTGGGGTGATAAC+GGG | - | chr5.1:54531672-54531691 | MS.gene43792:intron | 45.0% |
| ! | GAGAGCTGCAAATACTGGTT+GGG | - | chr5.1:54531661-54531680 | MS.gene43792:intron | 45.0% |
| ! | TTTTTATTCCCCGCTTGCCT+AGG | + | chr5.1:54530617-54530636 | None:intergenic | 45.0% |
| !! | GGTGATAACGGGATTGCAAA+AGG | - | chr5.1:54531683-54531702 | MS.gene43792:intron | 45.0% |
| !! | GTTTAGGAGTTTCTAGGGCA+GGG | + | chr5.1:54531089-54531108 | None:intergenic | 45.0% |
| !! | TGTTTAGGAGTTTCTAGGGC+AGG | + | chr5.1:54531090-54531109 | None:intergenic | 45.0% |
| !! | TTTAGGAGTTTCTAGGGCAG+GGG | + | chr5.1:54531088-54531107 | None:intergenic | 45.0% |
| !!! | AGGCGGGATGTTGATGATTT+TGG | - | chr5.1:54532151-54532170 | MS.gene43792:intron | 45.0% |
| !! | ATAAAAAAAAAAAAAAAAAC+TGG | + | chr5.1:54531440-54531459 | None:intergenic | 5.0% |
| !! | TAAAAAAAAAAAAAAAAACT+GGG | + | chr5.1:54531439-54531458 | None:intergenic | 5.0% |
| !! | TCATATAAATAAAAAAAAAA+AGG | + | chr5.1:54530442-54530461 | None:intergenic | 5.0% |
| AACAGCGATCACATCACCCT+CGG | + | chr5.1:54528345-54528364 | None:intergenic | 50.0% | |
| AACCCTATTCACCCCTTTCC+AGG | + | chr5.1:54530859-54530878 | None:intergenic | 50.0% | |
| AAGCCAGTCATCAAGGCTGT+AGG | + | chr5.1:54529490-54529509 | None:intergenic | 50.0% | |
| ATCAACAACCTCCCCATACC+TGG | + | chr5.1:54528552-54528571 | None:intergenic | 50.0% | |
| ATCACCCTCGGTGAAATCGA+AGG | + | chr5.1:54528333-54528352 | None:intergenic | 50.0% | |
| ATGCGCTTCACCAGTGTTAG+CGG | + | chr5.1:54528209-54528228 | None:intergenic | 50.0% | |
| CAAGAGAAACACACGGTAGC+AGG | - | chr5.1:54532251-54532270 | MS.gene43792:intron | 50.0% | |
| CAGAGCCCGTGAAAATGAGA+TGG | - | chr5.1:54531802-54531821 | MS.gene43792:intron | 50.0% | |
| CATTATTGTGCCCTGCCCTT+AGG | + | chr5.1:54531116-54531135 | None:intergenic | 50.0% | |
| CCTAAACAAAGCCTAAGGGC+AGG | - | chr5.1:54531102-54531121 | MS.gene43792:intron | 50.0% | |
| CTCCTTTGCCGATCTTCTCT+TGG | + | chr5.1:54531980-54531999 | None:intergenic | 50.0% | |
| CTGAATGGAGCTCAGGTTTC+AGG | - | chr5.1:54528996-54529015 | MS.gene43792:intron | 50.0% | |
| CTGACGATGAATCTATGCCG+AGG | - | chr5.1:54532299-54532318 | MS.gene43792:CDS | 50.0% | |
| GAATGAAACCTAGGCAAGCG+GGG | - | chr5.1:54530606-54530625 | MS.gene43792:intron | 50.0% | |
| GATGGAGGAGGAAGATGAAG+AGG | - | chr5.1:54529058-54529077 | MS.gene43792:intron | 50.0% | |
| GGAAGCAAAGCAGAAAAGGG+AGG | - | chr5.1:54529079-54529098 | MS.gene43792:intron | 50.0% | |
| GGGGTGCGATATCAGAAAGT+TGG | - | chr5.1:54530881-54530900 | MS.gene43792:intron | 50.0% | |
| GGTCACTTCAGCTGCTATAG+CGG | - | chr5.1:54529897-54529916 | MS.gene43792:intron | 50.0% | |
| GTTTGTCGGGCTTTCCAAAG+AGG | - | chr5.1:54529110-54529129 | MS.gene43792:intron | 50.0% | |
| TCACCCTCGGTGAAATCGAA+GGG | + | chr5.1:54528332-54528351 | None:intergenic | 50.0% | |
| TCATCAACATCCCGCCTACT+TGG | + | chr5.1:54532148-54532167 | None:intergenic | 50.0% | |
| TGCCAAGAGAAGATCGGCAA+AGG | - | chr5.1:54531975-54531994 | MS.gene43792:intron | 50.0% | |
| TTGTCGGGCTTTCCAAAGAG+GGG | - | chr5.1:54529112-54529131 | MS.gene43792:intron | 50.0% | |
| ! | ATGGAGCTCAGGTTTCAGGT+AGG | - | chr5.1:54529000-54529019 | MS.gene43792:intron | 50.0% |
| ! | CATCTCATTTTCACGGGCTC+TGG | + | chr5.1:54531804-54531823 | None:intergenic | 50.0% |
| ! | TCCGCTTATGTTTTCGTCGG+TGG | - | chr5.1:54528302-54528321 | MS.gene43792:CDS | 50.0% |
| !! | CCTGCCCTTAGGCTTTGTTT+AGG | + | chr5.1:54531105-54531124 | None:intergenic | 50.0% |
| AGCGGTGCGGAATGAGATAG+AGG | - | chr5.1:54529876-54529895 | MS.gene43792:intron | 55.0% | |
| CACGAGTACACTCCCCTCTT+TGG | + | chr5.1:54529127-54529146 | None:intergenic | 55.0% | |
| CCGACTACAAGGTGGGATAG+CGG | + | chr5.1:54530182-54530201 | None:intergenic | 55.0% | |
| CCGCTATCCCACCTTGTAGT+CGG | - | chr5.1:54530179-54530198 | MS.gene43792:intron | 55.0% | |
| CGACTACAAGGTGGGATAGC+GGG | + | chr5.1:54530181-54530200 | None:intergenic | 55.0% | |
| CGCTAATCGTCATAGCGGTG+CGG | - | chr5.1:54529863-54529882 | MS.gene43792:intron | 55.0% | |
| GAAAGCCCGACAAACACCAC+GGG | + | chr5.1:54529105-54529124 | None:intergenic | 55.0% | |
| GGAAAGCCCGACAAACACCA+CGG | + | chr5.1:54529106-54529125 | None:intergenic | 55.0% | |
| GGTGATATCCAGGTATGGGG+AGG | - | chr5.1:54528541-54528560 | MS.gene43792:CDS | 55.0% | |
| GTAGCAGCCGACTACAAGGT+GGG | + | chr5.1:54530189-54530208 | None:intergenic | 55.0% | |
| TGCGCTTCACCAGTGTTAGC+GGG | + | chr5.1:54528208-54528227 | None:intergenic | 55.0% | |
| ! | ACGCCTACAGCCTTGATGAC+TGG | - | chr5.1:54529484-54529503 | MS.gene43792:intron | 55.0% |
| ! | CAAAGAGGGGAGTGTACTCG+TGG | - | chr5.1:54529125-54529144 | MS.gene43792:intron | 55.0% |
| ! | GCGGCCGCTATTGACTACTA+TGG | + | chr5.1:54529816-54529835 | None:intergenic | 55.0% |
| !! | TATAGCGGCGTAGCGGATAG+CGG | - | chr5.1:54529912-54529931 | MS.gene43792:intron | 55.0% |
| !! | TGCTTGGTAGGCTTGCTGTC+AGG | - | chr5.1:54529531-54529550 | MS.gene43792:intron | 55.0% |
| AAGCAGAAAAGGGAGGCCCG+TGG | - | chr5.1:54529086-54529105 | MS.gene43792:intron | 60.0% | |
| CACACGGTAGCAGGGAAGAG+AGG | - | chr5.1:54532260-54532279 | MS.gene43792:intron | 60.0% | |
| CAGCTGCTATAGCGGCGTAG+CGG | - | chr5.1:54529905-54529924 | MS.gene43792:intron | 60.0% | |
| CGTAGCAGCCGACTACAAGG+TGG | + | chr5.1:54530190-54530209 | None:intergenic | 60.0% | |
| GTGCGTAGCAGCCGACTACA+AGG | + | chr5.1:54530193-54530212 | None:intergenic | 60.0% | |
| !! | AGGAGTTTCTAGGGCAGGGG+AGG | + | chr5.1:54531085-54531104 | None:intergenic | 60.0% |
| !! | GGAGTTTCTAGGGCAGGGGA+GGG | + | chr5.1:54531084-54531103 | None:intergenic | 60.0% |
| AATAGCGGCCGCACGTAGCG+TGG | - | chr5.1:54529824-54529843 | MS.gene43792:intron | 65.0% | |
| GGAGGCCCGTGGTGTTTGTC+GGG | - | chr5.1:54529097-54529116 | MS.gene43792:intron | 65.0% | |
| GGGAGGCCCGTGGTGTTTGT+CGG | - | chr5.1:54529096-54529115 | MS.gene43792:intron | 65.0% | |
| ! | GGGGAGTGTACTCGTGGAGC+TGG | - | chr5.1:54529131-54529150 | MS.gene43792:intron | 65.0% |
| ! | TCTAGGGCAGGGGAGGGCTT+TGG | + | chr5.1:54531078-54531097 | None:intergenic | 65.0% |
| CGTCGCAGCCACGCTACGTG+CGG | + | chr5.1:54529835-54529854 | None:intergenic | 70.0% | |
| ! | AGGGCAGGGGAGGGCTTTGG+AGG | + | chr5.1:54531075-54531094 | None:intergenic | 70.0% |
| !! | GGGCAGGGGAGGGCTTTGGA+GGG | + | chr5.1:54531074-54531093 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 54528200 | 54532441 | 54528200 | ID=MS.gene43792 |
| chr5.1 | mRNA | 54528200 | 54532441 | 54528200 | ID=MS.gene43792.t1;Parent=MS.gene43792 |
| chr5.1 | exon | 54532269 | 54532441 | 54532269 | ID=MS.gene43792.t1.exon1;Parent=MS.gene43792.t1 |
| chr5.1 | CDS | 54532269 | 54532441 | 54532269 | ID=cds.MS.gene43792.t1;Parent=MS.gene43792.t1 |
| chr5.1 | exon | 54531979 | 54532088 | 54531979 | ID=MS.gene43792.t1.exon2;Parent=MS.gene43792.t1 |
| chr5.1 | CDS | 54531979 | 54532088 | 54531979 | ID=cds.MS.gene43792.t1;Parent=MS.gene43792.t1 |
| chr5.1 | exon | 54531463 | 54531650 | 54531463 | ID=MS.gene43792.t1.exon3;Parent=MS.gene43792.t1 |
| chr5.1 | CDS | 54531463 | 54531650 | 54531463 | ID=cds.MS.gene43792.t1;Parent=MS.gene43792.t1 |
| chr5.1 | exon | 54528200 | 54528979 | 54528200 | ID=MS.gene43792.t1.exon4;Parent=MS.gene43792.t1 |
| chr5.1 | CDS | 54528200 | 54528979 | 54528200 | ID=cds.MS.gene43792.t1;Parent=MS.gene43792.t1 |
| Gene Sequence |
| Protein sequence |
