Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43939.t1 | KEH27768.1 | 87.4 | 286 | 28 | 1 | 1 | 278 | 20 | 305 | 2.50E-130 | 474.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43939.t1 | Q8VXV4 | 69.2 | 289 | 75 | 3 | 1 | 278 | 47 | 332 | 5.7e-107 | 388.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43939.t1 | A0A072UF74 | 87.4 | 286 | 28 | 1 | 1 | 278 | 20 | 305 | 1.8e-130 | 474.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051800 | MS.gene43939 | 0.81821 | 2.21E-52 | -1.69E-46 |
| MS.gene054641 | MS.gene43939 | 0.81092 | 9.07E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCATATATTTGCAGTTTA+TGG | 0.102757 | 5.4:+40741754 | MS.gene43939:CDS |
| TACCATAAACTGCAAATATA+TGG | 0.244858 | 5.4:-40741756 | None:intergenic |
| GCAGATACAGTTGTCTTAAT+TGG | 0.247309 | 5.4:-40740527 | None:intergenic |
| TGGGACAGTTTGTATCTAAA+AGG | 0.250147 | 5.4:+40740603 | MS.gene43939:CDS |
| AGAATTGGATCTTTCAAGTT+TGG | 0.271218 | 5.4:+40740311 | MS.gene43939:CDS |
| CTGATTCAAACTTGATATTT+CGG | 0.279600 | 5.4:-40741989 | None:intergenic |
| AACTGTATCTGCGACTGTTT+TGG | 0.304639 | 5.4:+40740538 | MS.gene43939:CDS |
| TTTGAACAAATCAGCTGCTT+TGG | 0.312974 | 5.4:-40740007 | None:intergenic |
| TTGAACAAATCAGCTGCTTT+GGG | 0.343891 | 5.4:-40740006 | None:intergenic |
| CTAGCAACTCACGGAGTTCA+TGG | 0.345019 | 5.4:-40741562 | None:intergenic |
| GAATTGGATCTTTCAAGTTT+GGG | 0.345813 | 5.4:+40740312 | MS.gene43939:CDS |
| TATTTCGACCAGGAAGAAAA+TGG | 0.355704 | 5.4:+40741278 | MS.gene43939:CDS |
| TCATACTGGCGCCGTTTGTC+AGG | 0.386559 | 5.4:-40740062 | None:intergenic |
| ACAAACTGTCCCAGTGGAAG+TGG | 0.397288 | 5.4:-40740593 | None:intergenic |
| TCCACACATGACAGCAAACT+TGG | 0.398581 | 5.4:+40740500 | MS.gene43939:intron |
| TACAATTCGCCCACTTCCAC+TGG | 0.406187 | 5.4:+40740583 | MS.gene43939:CDS |
| AATGGGAAGGTTACCTCTGC+TGG | 0.409907 | 5.4:+40741498 | MS.gene43939:CDS |
| GTTTGATCCAGTCGATAAAC+AGG | 0.410262 | 5.4:-40741540 | None:intergenic |
| TGGCTTAAGTCTTGCTCTCC+AGG | 0.412893 | 5.4:+40741301 | MS.gene43939:CDS |
| AAAGATCCAATTCTAACTCT+TGG | 0.419421 | 5.4:-40740302 | None:intergenic |
| AGATAGCCAAGAGTTAGAAT+TGG | 0.432638 | 5.4:+40740296 | MS.gene43939:CDS |
| ATCAGACAAAAGCAAATTCA+AGG | 0.444705 | 5.4:+40740798 | MS.gene43939:CDS |
| GGATCATTAGCATTCTTGTC+AGG | 0.445452 | 5.4:-40739985 | None:intergenic |
| CGGCGCCAGTATGACTCATC+TGG | 0.457553 | 5.4:+40740071 | MS.gene43939:CDS |
| ACCATAAACTGCAAATATAT+GGG | 0.460871 | 5.4:-40741755 | None:intergenic |
| CTCTTGGCTATCTGATTCTA+CGG | 0.489724 | 5.4:-40740286 | None:intergenic |
| GGGACAGTTTGTATCTAAAA+GGG | 0.490886 | 5.4:+40740604 | MS.gene43939:CDS |
| AAAAGCCAGATGAGTCATAC+TGG | 0.492431 | 5.4:-40740076 | None:intergenic |
| ACAGAAGAGGAAGCAAGAGC+TGG | 0.497534 | 5.4:+40740754 | MS.gene43939:CDS |
| ACTCAGTTAATTCACATGGC+TGG | 0.506595 | 5.4:-40741720 | None:intergenic |
| ATGTGAATTAACTGAGTTGA+AGG | 0.509902 | 5.4:+40741726 | MS.gene43939:CDS |
| CGCTAAAAGGTGCAGCACAC+AGG | 0.519056 | 5.4:-40741915 | None:intergenic |
| AGCAGCTGATTTGTTCAAAG+AGG | 0.522782 | 5.4:+40740011 | MS.gene43939:CDS |
| TTCAGTTACAATAACAGAAG+AGG | 0.550636 | 5.4:+40740741 | MS.gene43939:CDS |
| ACAATTCGCCCACTTCCACT+GGG | 0.599063 | 5.4:+40740584 | MS.gene43939:CDS |
| TTCAACTCAGTTAATTCACA+TGG | 0.619628 | 5.4:-40741724 | None:intergenic |
| ACAGGTATTATATTTCGACC+AGG | 0.633793 | 5.4:+40741268 | MS.gene43939:intron |
| TCTTGTCGGATCCTGACAAA+CGG | 0.635449 | 5.4:+40740051 | MS.gene43939:CDS |
| CAAACTGTCCCAGTGGAAGT+GGG | 0.636500 | 5.4:-40740592 | None:intergenic |
| GAATTAACTGAGTTGAAGGC+TGG | 0.637203 | 5.4:+40741730 | MS.gene43939:CDS |
| AAGAAAATACATTCCAGCAG+AGG | 0.649214 | 5.4:-40741511 | None:intergenic |
| TTCGACCAGGAAGAAAATGG+TGG | 0.674770 | 5.4:+40741281 | MS.gene43939:CDS |
| TTAGATACAAACTGTCCCAG+TGG | 0.680106 | 5.4:-40740599 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAAATTTTTCAAAGTT+GGG | - | chr5.4:40741140-40741159 | None:intergenic | 10.0% |
| !!! | ATATTTAAAATTTGATATGA+TGG | - | chr5.4:40741626-40741645 | None:intergenic | 10.0% |
| !!! | ATCATATCAAATTTTAAATA+TGG | + | chr5.4:40741625-40741644 | MS.gene43939:intron | 10.0% |
| !!! | ATTTTAAGTACTTTTAAAAT+TGG | - | chr5.4:40740978-40740997 | None:intergenic | 10.0% |
| !!! | TTTTAAGTACTTTTAAAATT+GGG | - | chr5.4:40740977-40740996 | None:intergenic | 10.0% |
| !!! | ACATTTTTTTATTTATGCTT+TGG | + | chr5.4:40740669-40740688 | MS.gene43939:intron | 15.0% |
| !!! | CATATTAAATTTTTCAAAGT+TGG | - | chr5.4:40741141-40741160 | None:intergenic | 15.0% |
| !!! | TAAAAGTACTTAAAATTTAC+CGG | + | chr5.4:40740982-40741001 | MS.gene43939:intron | 15.0% |
| !!! | TATTAAATTTTTCAAAGTTG+GGG | - | chr5.4:40741139-40741158 | None:intergenic | 15.0% |
| !! | TTGAAAAATTTAATATGTCC+TGG | + | chr5.4:40741144-40741163 | MS.gene43939:intron | 20.0% |
| ! | AACAGAAAACATTGTGAATT+TGG | - | chr5.4:40740191-40740210 | None:intergenic | 25.0% |
| ! | ACCATAAACTGCAAATATAT+GGG | - | chr5.4:40741758-40741777 | None:intergenic | 25.0% |
| ! | ACTAAGTAGTCAACAAAAAT+AGG | - | chr5.4:40740415-40740434 | None:intergenic | 25.0% |
| ! | ATACAAAAATGTAAACCAGA+AGG | - | chr5.4:40740154-40740173 | None:intergenic | 25.0% |
| ! | ATGATGAGATTAGATACATA+TGG | - | chr5.4:40742053-40742072 | None:intergenic | 25.0% |
| ! | CTAAGTAGTCAACAAAAATA+GGG | - | chr5.4:40740414-40740433 | None:intergenic | 25.0% |
| ! | CTGATTCAAACTTGATATTT+CGG | - | chr5.4:40741992-40742011 | None:intergenic | 25.0% |
| ! | TAAGTAGTCAACAAAAATAG+GGG | - | chr5.4:40740413-40740432 | None:intergenic | 25.0% |
| ! | TACCATAAACTGCAAATATA+TGG | - | chr5.4:40741759-40741778 | None:intergenic | 25.0% |
| ! | TGACTGTAATTTATCTCTAT+AGG | + | chr5.4:40741818-40741837 | MS.gene43939:intron | 25.0% |
| ! | TTGAATAATCATCTTTCTAC+AGG | + | chr5.4:40741250-40741269 | MS.gene43939:intron | 25.0% |
| !! | CTTTTCTTATAATCTCTTGT+CGG | + | chr5.4:40740037-40740056 | MS.gene43939:CDS | 25.0% |
| !! | TTTTCTTTTTCTTCGCTAAA+AGG | - | chr5.4:40741931-40741950 | None:intergenic | 25.0% |
| !! | TTTTGAACCAATAAGACTTT+TGG | + | chr5.4:40740117-40740136 | MS.gene43939:intron | 25.0% |
| !!! | TATTTTGTTCTTGCTTTAAG+AGG | + | chr5.4:40740905-40740924 | MS.gene43939:intron | 25.0% |
| !!! | TTTTTGAAAAACGATGTATC+TGG | - | chr5.4:40741688-40741707 | None:intergenic | 25.0% |
| AAAGAAGATCAATAACATGC+TGG | - | chr5.4:40741013-40741032 | None:intergenic | 30.0% | |
| AAAGATCCAATTCTAACTCT+TGG | - | chr5.4:40740305-40740324 | None:intergenic | 30.0% | |
| AATATTTCATTCTTGCCTGT+AGG | + | chr5.4:40740263-40740282 | MS.gene43939:intron | 30.0% | |
| ACATTAATAATTACTGCTGC+AGG | + | chr5.4:40741461-40741480 | MS.gene43939:intron | 30.0% | |
| ACCCATATATTTGCAGTTTA+TGG | + | chr5.4:40741754-40741773 | MS.gene43939:CDS | 30.0% | |
| ATCAGACAAAAGCAAATTCA+AGG | + | chr5.4:40740798-40740817 | MS.gene43939:CDS | 30.0% | |
| CAAGCATATAATATACAGCA+TGG | - | chr5.4:40741072-40741091 | None:intergenic | 30.0% | |
| GGAGTTATTATCACGAAATA+GGG | - | chr5.4:40741118-40741137 | None:intergenic | 30.0% | |
| TGTTCTTGAACCTATTCAAA+TGG | + | chr5.4:40740226-40740245 | MS.gene43939:intron | 30.0% | |
| TTCAACTCAGTTAATTCACA+TGG | - | chr5.4:40741727-40741746 | None:intergenic | 30.0% | |
| TTCAGTTACAATAACAGAAG+AGG | + | chr5.4:40740741-40740760 | MS.gene43939:CDS | 30.0% | |
| ! | ATGTGAATTAACTGAGTTGA+AGG | + | chr5.4:40741726-40741745 | MS.gene43939:CDS | 30.0% |
| !! | AGAATTGGATCTTTCAAGTT+TGG | + | chr5.4:40740311-40740330 | MS.gene43939:CDS | 30.0% |
| !! | CGTTTTTCAAAAAGCTTGAT+GGG | + | chr5.4:40741695-40741714 | MS.gene43939:CDS | 30.0% |
| !! | GAATTGGATCTTTCAAGTTT+GGG | + | chr5.4:40740312-40740331 | MS.gene43939:CDS | 30.0% |
| !! | TCGTTTTTCAAAAAGCTTGA+TGG | + | chr5.4:40741694-40741713 | MS.gene43939:CDS | 30.0% |
| AAGAAAATACATTCCAGCAG+AGG | - | chr5.4:40741514-40741533 | None:intergenic | 35.0% | |
| AAGTGAGAAACATCCATTTG+TGG | - | chr5.4:40741594-40741613 | None:intergenic | 35.0% | |
| AATCAGAATATCGAGAGGTA+TGG | + | chr5.4:40742006-40742025 | MS.gene43939:intron | 35.0% | |
| ACACATTATGTACACACAAC+AGG | - | chr5.4:40741342-40741361 | None:intergenic | 35.0% | |
| ACACATTTCTTGAGATCAAC+AGG | - | chr5.4:40740882-40740901 | None:intergenic | 35.0% | |
| ACAGGTATTATATTTCGACC+AGG | + | chr5.4:40741268-40741287 | MS.gene43939:intron | 35.0% | |
| AGATAGCCAAGAGTTAGAAT+TGG | + | chr5.4:40740296-40740315 | MS.gene43939:CDS | 35.0% | |
| AGGAAGACAGCACAAAAAAT+GGG | + | chr5.4:40741481-40741500 | MS.gene43939:intron | 35.0% | |
| AGGAGAAAATGTTGTATACC+TGG | - | chr5.4:40741322-40741341 | None:intergenic | 35.0% | |
| CACTAGTGATCCATTTGAAT+AGG | - | chr5.4:40740239-40740258 | None:intergenic | 35.0% | |
| CATGCTGTTATATTTCCTCT+AGG | + | chr5.4:40741853-40741872 | MS.gene43939:intron | 35.0% | |
| CATTTCATTGAATCTCATGC+TGG | + | chr5.4:40742070-40742089 | MS.gene43939:intron | 35.0% | |
| CCACTAACATTCAAGACTTT+AGG | - | chr5.4:40741376-40741395 | None:intergenic | 35.0% | |
| CCTAAAGTCTTGAATGTTAG+TGG | + | chr5.4:40741373-40741392 | MS.gene43939:intron | 35.0% | |
| GACTGTAAGAGATCAATCAA+TGG | - | chr5.4:40740646-40740665 | None:intergenic | 35.0% | |
| GCAGATACAGTTGTCTTAAT+TGG | - | chr5.4:40740530-40740549 | None:intergenic | 35.0% | |
| GGGACAGTTTGTATCTAAAA+GGG | + | chr5.4:40740604-40740623 | MS.gene43939:CDS | 35.0% | |
| GGGAGTTATTATCACGAAAT+AGG | - | chr5.4:40741119-40741138 | None:intergenic | 35.0% | |
| GTTTGAATCAGAATATCGAG+AGG | + | chr5.4:40742001-40742020 | MS.gene43939:intron | 35.0% | |
| TATTTCGACCAGGAAGAAAA+TGG | + | chr5.4:40741278-40741297 | MS.gene43939:CDS | 35.0% | |
| TGGGACAGTTTGTATCTAAA+AGG | + | chr5.4:40740603-40740622 | MS.gene43939:CDS | 35.0% | |
| TGTTGAAACGTTGAAGAAGT+AGG | + | chr5.4:40741170-40741189 | MS.gene43939:intron | 35.0% | |
| TTCAACGTTTCAACAAATCC+AGG | - | chr5.4:40741165-40741184 | None:intergenic | 35.0% | |
| TTGAAAAAGTTGTCACCTAG+AGG | - | chr5.4:40741871-40741890 | None:intergenic | 35.0% | |
| TTTGAACAAATCAGCTGCTT+TGG | - | chr5.4:40740010-40740029 | None:intergenic | 35.0% | |
| ! | ACATTCAAGACTTTAGGAGA+AGG | - | chr5.4:40741370-40741389 | None:intergenic | 35.0% |
| ! | ATGACCTCCAAAAGTCTTAT+TGG | - | chr5.4:40740127-40740146 | None:intergenic | 35.0% |
| ! | TCTGCTGGAATGTATTTTCT+TGG | + | chr5.4:40741513-40741532 | MS.gene43939:CDS | 35.0% |
| ! | TGAACCAATAAGACTTTTGG+AGG | + | chr5.4:40740120-40740139 | MS.gene43939:intron | 35.0% |
| ! | TTGAACAAATCAGCTGCTTT+GGG | - | chr5.4:40740009-40740028 | None:intergenic | 35.0% |
| !! | CAATGTTTGCTGCACTTTTT+AGG | + | chr5.4:40740346-40740365 | MS.gene43939:CDS | 35.0% |
| AAAAGCCAGATGAGTCATAC+TGG | - | chr5.4:40740079-40740098 | None:intergenic | 40.0% | |
| ACTCAGTTAATTCACATGGC+TGG | - | chr5.4:40741723-40741742 | None:intergenic | 40.0% | |
| AGACAGCACAAAAAATGGGA+AGG | + | chr5.4:40741485-40741504 | MS.gene43939:CDS | 40.0% | |
| CAATAACATGCTGGATACTC+CGG | - | chr5.4:40741004-40741023 | None:intergenic | 40.0% | |
| CAGGAAGACAGCACAAAAAA+TGG | + | chr5.4:40741480-40741499 | MS.gene43939:intron | 40.0% | |
| CTCTTGGCTATCTGATTCTA+CGG | - | chr5.4:40740289-40740308 | None:intergenic | 40.0% | |
| CTTTGTAATTCATCCCTGCT+TGG | + | chr5.4:40740449-40740468 | MS.gene43939:intron | 40.0% | |
| CTTTGTTAGAGATCAGCAGA+GGG | + | chr5.4:40741029-40741048 | MS.gene43939:intron | 40.0% | |
| GAAAGTTATGATGCAAGGAG+TGG | - | chr5.4:40740480-40740499 | None:intergenic | 40.0% | |
| GCTTTCATGATTCATCTCAC+AGG | + | chr5.4:40740693-40740712 | MS.gene43939:intron | 40.0% | |
| GGATCATTAGCATTCTTGTC+AGG | - | chr5.4:40739988-40740007 | None:intergenic | 40.0% | |
| GTCAACAAAAATAGGGGTGA+AGG | - | chr5.4:40740407-40740426 | None:intergenic | 40.0% | |
| GTGGAGAAAGTTATGATGCA+AGG | - | chr5.4:40740485-40740504 | None:intergenic | 40.0% | |
| GTTTGATCCAGTCGATAAAC+AGG | - | chr5.4:40741543-40741562 | None:intergenic | 40.0% | |
| TCTTTGTTAGAGATCAGCAG+AGG | + | chr5.4:40741028-40741047 | MS.gene43939:intron | 40.0% | |
| TTAGATACAAACTGTCCCAG+TGG | - | chr5.4:40740602-40740621 | None:intergenic | 40.0% | |
| TTGCTAGTTGCTACCACAAA+TGG | + | chr5.4:40741578-40741597 | MS.gene43939:intron | 40.0% | |
| ! | AACTGTATCTGCGACTGTTT+TGG | + | chr5.4:40740538-40740557 | MS.gene43939:CDS | 40.0% |
| ! | AATAGGGGTGAAGGTGTAAA+TGG | - | chr5.4:40740398-40740417 | None:intergenic | 40.0% |
| ! | ATAGGGGTGAAGGTGTAAAT+GGG | - | chr5.4:40740397-40740416 | None:intergenic | 40.0% |
| ! | GAATTAACTGAGTTGAAGGC+TGG | + | chr5.4:40741730-40741749 | MS.gene43939:CDS | 40.0% |
| ! | TGGTTTTCCTGTTTATCGAC+TGG | + | chr5.4:40741533-40741552 | MS.gene43939:CDS | 40.0% |
| ! | TTAAGCCACCATTTTCTTCC+TGG | - | chr5.4:40741289-40741308 | None:intergenic | 40.0% |
| ! | TTTTGTGTGTGTGTGTGTGT+AGG | + | chr5.4:40742094-40742113 | MS.gene43939:intron | 40.0% |
| !! | AGCAGCTGATTTGTTCAAAG+AGG | + | chr5.4:40740011-40740030 | MS.gene43939:CDS | 40.0% |
| !!! | GCTGCACTTTTTAGGTAAGA+AGG | + | chr5.4:40740354-40740373 | MS.gene43939:intron | 40.0% |
| !!! | TATGACTCATCTGGCTTTTG+AGG | + | chr5.4:40740080-40740099 | MS.gene43939:CDS | 40.0% |
| AAGGAGTGGAAAAACCAAGC+AGG | - | chr5.4:40740466-40740485 | None:intergenic | 45.0% | |
| AGGAGTGGAAAAACCAAGCA+GGG | - | chr5.4:40740465-40740484 | None:intergenic | 45.0% | |
| TATCTGATTCTACGGCCTAC+AGG | - | chr5.4:40740281-40740300 | None:intergenic | 45.0% | |
| TCCACACATGACAGCAAACT+TGG | + | chr5.4:40740500-40740519 | MS.gene43939:intron | 45.0% | |
| TCTTGTCGGATCCTGACAAA+CGG | + | chr5.4:40740051-40740070 | MS.gene43939:CDS | 45.0% | |
| TGGTAGCAACTAGCAACTCA+CGG | - | chr5.4:40741574-40741593 | None:intergenic | 45.0% | |
| TTCGACCAGGAAGAAAATGG+TGG | + | chr5.4:40741281-40741300 | MS.gene43939:CDS | 45.0% | |
| TTGGAGGTCATCAATCCTTC+TGG | + | chr5.4:40740136-40740155 | MS.gene43939:intron | 45.0% | |
| !! | ACCAAGTTTGCTGTCATGTG+TGG | - | chr5.4:40740504-40740523 | None:intergenic | 45.0% |
| !!! | ATCTGCGACTGTTTTGGAAG+AGG | + | chr5.4:40740544-40740563 | MS.gene43939:CDS | 45.0% |
| !!! | GTTTTGGAAGAGGCACTCAA+TGG | + | chr5.4:40740554-40740573 | MS.gene43939:CDS | 45.0% |
| AATGGGAAGGTTACCTCTGC+TGG | + | chr5.4:40741498-40741517 | MS.gene43939:CDS | 50.0% | |
| ACAAACTGTCCCAGTGGAAG+TGG | - | chr5.4:40740596-40740615 | None:intergenic | 50.0% | |
| ACAATTCGCCCACTTCCACT+GGG | + | chr5.4:40740584-40740603 | MS.gene43939:CDS | 50.0% | |
| ACAGAAGAGGAAGCAAGAGC+TGG | + | chr5.4:40740754-40740773 | MS.gene43939:CDS | 50.0% | |
| CAAACTGTCCCAGTGGAAGT+GGG | - | chr5.4:40740595-40740614 | None:intergenic | 50.0% | |
| CTAGCAACTCACGGAGTTCA+TGG | - | chr5.4:40741565-40741584 | None:intergenic | 50.0% | |
| TACAATTCGCCCACTTCCAC+TGG | + | chr5.4:40740583-40740602 | MS.gene43939:CDS | 50.0% | |
| TGGCTTAAGTCTTGCTCTCC+AGG | + | chr5.4:40741301-40741320 | MS.gene43939:CDS | 50.0% | |
| TGTGTGTGTGTGTGTAGGTC+TGG | + | chr5.4:40742099-40742118 | MS.gene43939:intron | 50.0% | |
| TCATACTGGCGCCGTTTGTC+AGG | - | chr5.4:40740065-40740084 | None:intergenic | 55.0% | |
| ! | CGCTAAAAGGTGCAGCACAC+AGG | - | chr5.4:40741918-40741937 | None:intergenic | 55.0% |
| CGGCGCCAGTATGACTCATC+TGG | + | chr5.4:40740071-40740090 | MS.gene43939:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 40739978 | 40742150 | 40739978 | ID=MS.gene43939 |
| chr5.4 | mRNA | 40739978 | 40742150 | 40739978 | ID=MS.gene43939.t1;Parent=MS.gene43939 |
| chr5.4 | exon | 40739978 | 40740101 | 40739978 | ID=MS.gene43939.t1.exon1;Parent=MS.gene43939.t1 |
| chr5.4 | CDS | 40739978 | 40740101 | 40739978 | ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1 |
| chr5.4 | exon | 40740285 | 40740367 | 40740285 | ID=MS.gene43939.t1.exon2;Parent=MS.gene43939.t1 |
| chr5.4 | CDS | 40740285 | 40740367 | 40740285 | ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1 |
| chr5.4 | exon | 40740514 | 40740625 | 40740514 | ID=MS.gene43939.t1.exon3;Parent=MS.gene43939.t1 |
| chr5.4 | CDS | 40740514 | 40740625 | 40740514 | ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1 |
| chr5.4 | exon | 40740715 | 40740819 | 40740715 | ID=MS.gene43939.t1.exon4;Parent=MS.gene43939.t1 |
| chr5.4 | CDS | 40740715 | 40740819 | 40740715 | ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1 |
| chr5.4 | exon | 40741272 | 40741322 | 40741272 | ID=MS.gene43939.t1.exon5;Parent=MS.gene43939.t1 |
| chr5.4 | CDS | 40741272 | 40741322 | 40741272 | ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1 |
| chr5.4 | exon | 40741483 | 40741572 | 40741483 | ID=MS.gene43939.t1.exon6;Parent=MS.gene43939.t1 |
| chr5.4 | CDS | 40741483 | 40741572 | 40741483 | ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1 |
| chr5.4 | exon | 40741667 | 40741775 | 40741667 | ID=MS.gene43939.t1.exon7;Parent=MS.gene43939.t1 |
| chr5.4 | CDS | 40741667 | 40741775 | 40741667 | ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1 |
| chr5.4 | exon | 40741875 | 40742000 | 40741875 | ID=MS.gene43939.t1.exon8;Parent=MS.gene43939.t1 |
| chr5.4 | CDS | 40741875 | 40742000 | 40741875 | ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1 |
| chr5.4 | exon | 40742116 | 40742150 | 40742116 | ID=MS.gene43939.t1.exon9;Parent=MS.gene43939.t1 |
| chr5.4 | CDS | 40742116 | 40742150 | 40742116 | ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1 |
| Gene Sequence |
| Protein sequence |
