AlfalfaGEDB | MS.gene43939

M. sativa cultivar XinJiangDaYe / MS.gene43939

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43939.t1	KEH27768.1	87.4	286	28	1	1	278	20	305	2.50E-130	474.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43939.t1	Q8VXV4	69.2	289	75	3	1	278	47	332	5.7e-107	388.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43939.t1	A0A072UF74	87.4	286	28	1	1	278	20	305	1.8e-130	474.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051800	MS.gene43939	0.81821	2.21E-52	-1.69E-46
MS.gene054641	MS.gene43939	0.81092	9.07E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 43 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCAGATGAGTCATAC+TGG	0.492431	5.4:-40740076	None:intergenic
AAAGATCCAATTCTAACTCT+TGG	0.419421	5.4:-40740302	None:intergenic
AACTGTATCTGCGACTGTTT+TGG	0.304639	5.4:+40740538	MS.gene43939:CDS
AAGAAAATACATTCCAGCAG+AGG	0.649214	5.4:-40741511	None:intergenic
AATGGGAAGGTTACCTCTGC+TGG	0.409907	5.4:+40741498	MS.gene43939:CDS
ACAAACTGTCCCAGTGGAAG+TGG	0.397288	5.4:-40740593	None:intergenic
ACAATTCGCCCACTTCCACT+GGG	0.599063	5.4:+40740584	MS.gene43939:CDS
ACAGAAGAGGAAGCAAGAGC+TGG	0.497534	5.4:+40740754	MS.gene43939:CDS
ACAGGTATTATATTTCGACC+AGG	0.633793	5.4:+40741268	MS.gene43939:intron
ACCATAAACTGCAAATATAT+GGG	0.460871	5.4:-40741755	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGATCAATAACATGC+TGG	-	chr5.4:40741013-40741032	None:intergenic	30.0%
AAAGATCCAATTCTAACTCT+TGG	-	chr5.4:40740305-40740324	None:intergenic	30.0%
AATATTTCATTCTTGCCTGT+AGG	+	chr5.4:40740263-40740282	MS.gene43939:intron	30.0%
ACATTAATAATTACTGCTGC+AGG	+	chr5.4:40741461-40741480	MS.gene43939:intron	30.0%
ACCCATATATTTGCAGTTTA+TGG	+	chr5.4:40741754-40741773	MS.gene43939:CDS	30.0%
ATCAGACAAAAGCAAATTCA+AGG	+	chr5.4:40740798-40740817	MS.gene43939:CDS	30.0%
CAAGCATATAATATACAGCA+TGG	-	chr5.4:40741072-40741091	None:intergenic	30.0%
GGAGTTATTATCACGAAATA+GGG	-	chr5.4:40741118-40741137	None:intergenic	30.0%
TGTTCTTGAACCTATTCAAA+TGG	+	chr5.4:40740226-40740245	MS.gene43939:intron	30.0%
TTCAACTCAGTTAATTCACA+TGG	-	chr5.4:40741727-40741746	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	40739978	40742150	40739978	ID=MS.gene43939
chr5.4	mRNA	40739978	40742150	40739978	ID=MS.gene43939.t1;Parent=MS.gene43939
chr5.4	exon	40739978	40740101	40739978	ID=MS.gene43939.t1.exon1;Parent=MS.gene43939.t1
chr5.4	CDS	40739978	40740101	40739978	ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1
chr5.4	exon	40740285	40740367	40740285	ID=MS.gene43939.t1.exon2;Parent=MS.gene43939.t1
chr5.4	CDS	40740285	40740367	40740285	ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1
chr5.4	exon	40740514	40740625	40740514	ID=MS.gene43939.t1.exon3;Parent=MS.gene43939.t1
chr5.4	CDS	40740514	40740625	40740514	ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1
chr5.4	exon	40740715	40740819	40740715	ID=MS.gene43939.t1.exon4;Parent=MS.gene43939.t1
chr5.4	CDS	40740715	40740819	40740715	ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1
chr5.4	exon	40741272	40741322	40741272	ID=MS.gene43939.t1.exon5;Parent=MS.gene43939.t1
chr5.4	CDS	40741272	40741322	40741272	ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1
chr5.4	exon	40741483	40741572	40741483	ID=MS.gene43939.t1.exon6;Parent=MS.gene43939.t1
chr5.4	CDS	40741483	40741572	40741483	ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1
chr5.4	exon	40741667	40741775	40741667	ID=MS.gene43939.t1.exon7;Parent=MS.gene43939.t1
chr5.4	CDS	40741667	40741775	40741667	ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1
chr5.4	exon	40741875	40742000	40741875	ID=MS.gene43939.t1.exon8;Parent=MS.gene43939.t1
chr5.4	CDS	40741875	40742000	40741875	ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1
chr5.4	exon	40742116	40742150	40742116	ID=MS.gene43939.t1.exon9;Parent=MS.gene43939.t1
chr5.4	CDS	40742116	40742150	40742116	ID=cds.MS.gene43939.t1;Parent=MS.gene43939.t1

Gene Sequence

>MS.gene43939

GTTTCATCCTGACAAGAATGCTAATGATCCCAAAGCAGCTGATTTGTTCAAAGAGGCTACTTTTCTTATAATCTCTTGTCGGATCCTGACAAACGGCGCCAGTATGACTCATCTGGCTTTTGAGGTAATATAAGTTATGTTTTGAACCAATAAGACTTTTGGAGGTCATCAATCCTTCTGGTTTACATTTTTGTATTGCTTTTGAAAATTCCAAATTCACAATGTTTTCTGTTTTCAAAAAAAGCAACTGTTCTTGAACCTATTCAAATGGATCACTAGTGCTGAAATATTTCATTCTTGCCTGTAGGCCGTAGAATCAGATAGCCAAGAGTTAGAATTGGATCTTTCAAGTTTGGGTGCTGTCAACACAATGTTTGCTGCACTTTTTAGGTAAGAAGGCTTAATTTTCTTCTCTTCCCATTTACACCTTCACCCCTATTTTTGTTGACTACTTAGTAGAGAATTTATTTTCTTTGTAATTCATCCCTGCTTGGTTTTTCCACTCCTTGCATCATAACTTTCTCCACACATGACAGCAAACTTGGTGTACCAATTAAGACAACTGTATCTGCGACTGTTTTGGAAGAGGCACTCAATGGTTCAGTTACAATTCGCCCACTTCCACTGGGACAGTTTGTATCTAAAAGGGTTAGTACTTTTTTTTTCCATTGATTGATCTCTTACAGTCATTACATTTTTTTATTTATGCTTTGGTGCTTTCATGATTCATCTCACAGGTTGAGAGCAATGTGCACATTTTCTATTCAGTTACAATAACAGAAGAGGAAGCAAGAGCTGGATTTGTTTGTCGAGTGCAATCATCAGACAAAAGCAAATTCAAGGTTCAAATTTAATTTTCTGTCATTGATATCAATGAAGATAGCATGCTAGTTATGCTCAACCTGTTGATCTCAAGAAATGTGTGCTTATTTTGTTCTTGCTTTAAGAGGCATATCTTTTATACAATTATTTTTAAAATATATGATCTCATTGAATCCCAATTTTAAAAGTACTTAAAATTTACCGGAGTATCCAGCATGTTATTGATCTTCTTTGTTAGAGATCAGCAGAGGGTAATATTTTTTTTAATTCCATGCTGTATATTATATGCTTGCTGAAAAATCATTCATGTGAGATCCCTATTTCGTGATAATAACTCCCCAACTTTGAAAAATTTAATATGTCCTGGATTTGTTGAAACGTTGAAGAAGTAGGAAGACTATGTTGTGCAATCATTAATGTAAGATTTATAAATGATATTTTTTAATTGTGTTGAATAATCATCTTTCTACAGGTATTATATTTCGACCAGGAAGAAAATGGTGGCTTAAGTCTTGCTCTCCAGGTATACAACATTTTCTCCTGTTGTGTGTACATAATGTGTTTTTTCCTTCTCCTAAAGTCTTGAATGTTAGTGGCTCTCTTCTATTTATTTAATTAATGCATACATTATTTTTGCATCTTCTGACTTCTACATTCTCTGACATTAATAATTACTGCTGCAGGAAGACAGCACAAAAAATGGGAAGGTTACCTCTGCTGGAATGTATTTTCTTGGTTTTCCTGTTTATCGACTGGATCAAACCATGAACTCCGTGAGTTGCTAGTTGCTACCACAAATGGATGTTTCTCACTTCAAATTTGTCCATCATATCAAATTTTAAATATGGTTCAATTATTTTTCTACAGATAGCTGCTTCTAAAGATCCAGATACATCGTTTTTCAAAAAGCTTGATGGGTTCCAGCCATGTGAATTAACTGAGTTGAAGGCTGGTACCCATATATTTGCAGTTTATGGTAACACATACTTTTATGCTCAGTGATGCTTGTTATGTTTCTTGACTGTAATTTATCTCTATAGGAATTGACTATTACATGCTGTTATATTTCCTCTAGGTGACAACTTTTTCAAAAGTGCGAACTATACAATAGAATTCCTGTGTGCTGCACCTTTTAGCGAAGAAAAAGAAAATTTAAGAAATGTAGAAACTCAAATTTTGTCGAAAAGAGCCGAAATATCAAGTTTGAATCAGAATATCGAGAGGTATGGACTTTGAACTAGCATTGTATTCCATATGTATCTAATCTCATCATTTCATTGAATCTCATGCTGGATTTTGTGTGTGTGTGTGTGTAGGTCTGGCACAATTTACAGAGATGACAAGCAGATAT

Protein sequence

>MS.gene43939.t1

VSSUQECUUSQSSUFVQRGYFSYNLLSDPDKRRQYDSSGFUGRRIRUPRVRIGSFKFGCCQHNVCCTFUQTWCTNUDNCICDCFGRGTQWFSYNSPTSTGTVCIUKGUEQCAHFLFSYNNRRGSKSWICLSSAIIRQKQIQGIIFRPGRKWWLKSCSPGRQHKKWEGYLCWNVFSWFSCLSTGSNHELHSCFURSRYIVFQKAUWVPAMUINUVEGWYPYICSLWUQLFQKCELYNRIPVCCTFURRKRKFKKCRNSNFVEKSRNIKSGTIYRDDKQI