Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44048.t1 | XP_013469022.1 | 93.9 | 297 | 6 | 1 | 1 | 285 | 1 | 297 | 6.70E-155 | 556.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44048.t1 | Q94AH1 | 65.1 | 292 | 86 | 2 | 6 | 285 | 13 | 300 | 7.6e-107 | 388.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44048.t1 | I3SZ53 | 93.9 | 297 | 6 | 1 | 1 | 285 | 1 | 297 | 4.8e-155 | 556.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049343 | MS.gene44048 | 0.830477 | 2.87E-55 | -1.69E-46 |
| MS.gene052519 | MS.gene44048 | 0.813954 | 1.97E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44048.t1 | MTR_1g081910 | 93.939 | 297 | 6 | 1 | 1 | 285 | 1 | 297 | 0.0 | 561 |
| MS.gene44048.t1 | MTR_4g109480 | 59.316 | 263 | 93 | 2 | 37 | 285 | 24 | 286 | 8.48e-100 | 294 |
| MS.gene44048.t1 | MTR_4g109480 | 56.281 | 199 | 73 | 2 | 37 | 221 | 24 | 222 | 5.74e-69 | 214 |
| MS.gene44048.t1 | MTR_4g109480 | 53.158 | 190 | 75 | 2 | 37 | 212 | 24 | 213 | 3.80e-57 | 184 |
| MS.gene44048.t1 | MTR_4g109480 | 52.381 | 189 | 76 | 2 | 37 | 211 | 24 | 212 | 9.15e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44048.t1 | AT3G05010 | 65.068 | 292 | 86 | 2 | 6 | 285 | 13 | 300 | 2.61e-138 | 392 |
| MS.gene44048.t1 | AT5G27210 | 66.667 | 270 | 78 | 1 | 28 | 285 | 28 | 297 | 2.96e-129 | 369 |
Find 50 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCCTTGTTTACTTCTTC+TGG | 0.137493 | 1.3:+57836984 | MS.gene44048:CDS |
| CTCGCGCTCACCGTTGTTTA+TGG | 0.150004 | 1.3:+57837306 | MS.gene44048:CDS |
| TTCTTCTGGAATGCTGTTTC+TGG | 0.158996 | 1.3:+57836998 | MS.gene44048:CDS |
| TATTGTTCATGTATCATTCT+AGG | 0.242876 | 1.3:+57837334 | MS.gene44048:CDS |
| ACTGGAAACGGCGCTGGTTT+TGG | 0.246426 | 1.3:+57837532 | MS.gene44048:CDS |
| ACTGCTGTATATTACATTTC+TGG | 0.250927 | 1.3:+57837693 | MS.gene44048:CDS |
| CTATATATCTATTTGCATTT+GGG | 0.257819 | 1.3:+57837214 | MS.gene44048:CDS |
| TTGTTTGCTTGCGGGCTTAC+TGG | 0.258766 | 1.3:+57837514 | MS.gene44048:CDS |
| CAATTGCATTGTTTGCTTGC+GGG | 0.288884 | 1.3:+57837506 | MS.gene44048:CDS |
| GCTATATATCTATTTGCATT+TGG | 0.295526 | 1.3:+57837213 | MS.gene44048:CDS |
| ACAAAAGAATTACCTTTAAC+AGG | 0.300915 | 1.3:-57837124 | None:intergenic |
| CAGGCATGGGAGTGCTCTCC+TGG | 0.303847 | 1.3:+57836939 | MS.gene44048:intron |
| ATACAGCAGTGGAAGATAAA+AGG | 0.326151 | 1.3:-57837680 | None:intergenic |
| TCGCGCTCACCGTTGTTTAT+GGG | 0.327006 | 1.3:+57837307 | MS.gene44048:CDS |
| GTTTCTGGAAGTGAGCTTGC+TGG | 0.348925 | 1.3:+57837013 | MS.gene44048:CDS |
| GAAGATTCTTCTTCTTCTAC+TGG | 0.367957 | 1.3:+57835975 | MS.gene44048:CDS |
| TTTCGTATTATGCTTCTCTT+TGG | 0.381366 | 1.3:+57836156 | MS.gene44048:CDS |
| GAAGCATTGACACGAACTTT+TGG | 0.389803 | 1.3:+57837071 | MS.gene44048:CDS |
| GGTATATCCGGTATCATTGT+TGG | 0.395818 | 1.3:+57837092 | MS.gene44048:CDS |
| TCGCTTGAAGTGGAACTTGT+GGG | 0.460605 | 1.3:+57837272 | MS.gene44048:CDS |
| CAACGGTGAGCGCGAGCTTG+TGG | 0.462450 | 1.3:-57837299 | None:intergenic |
| TAACAAAGGGATTCACCGAT+TGG | 0.465604 | 1.3:+57836003 | MS.gene44048:CDS |
| TACTCTGAAATGAAAGATGC+TGG | 0.469422 | 1.3:+57837867 | MS.gene44048:CDS |
| AACAAAGGGATTCACCGATT+GGG | 0.473818 | 1.3:+57836004 | MS.gene44048:CDS |
| GATCAGTGTCGATGAACAAC+GGG | 0.476434 | 1.3:-57837239 | None:intergenic |
| GGGCTTACTGGAAACGGCGC+TGG | 0.478494 | 1.3:+57837526 | MS.gene44048:CDS |
| GCTTGCGGGCTTACTGGAAA+CGG | 0.488027 | 1.3:+57837520 | MS.gene44048:CDS |
| TTCCATGTTAGCTCTTTCCC+AGG | 0.501628 | 1.3:-57836957 | None:intergenic |
| ATCAAAACCAACAATGATAC+CGG | 0.504747 | 1.3:-57837099 | None:intergenic |
| GCAATTGCATTGTTTGCTTG+CGG | 0.512576 | 1.3:+57837505 | MS.gene44048:CDS |
| CTCGCTTGAAGTGGAACTTG+TGG | 0.521442 | 1.3:+57837271 | MS.gene44048:CDS |
| TATATATCTATTTGCATTTG+GGG | 0.524806 | 1.3:+57837215 | MS.gene44048:CDS |
| TTGTTCATCGACACTGATCA+TGG | 0.535592 | 1.3:+57837243 | MS.gene44048:CDS |
| CTCCTGGGAAAGAGCTAACA+TGG | 0.541632 | 1.3:+57836955 | MS.gene44048:CDS |
| ATCATTCTAGGTGGAGAGAA+AGG | 0.546944 | 1.3:+57837346 | MS.gene44048:CDS |
| ATGGTACTCCTCGCTTGAAG+TGG | 0.567386 | 1.3:+57837262 | MS.gene44048:CDS |
| CTTCAGGGAAATAATGCAAG+TGG | 0.588641 | 1.3:+57837044 | MS.gene44048:CDS |
| GTGACACTCGAAAACCCAAT+CGG | 0.591095 | 1.3:-57836018 | None:intergenic |
| AGGCATGGGAGTGCTCTCCT+GGG | 0.596408 | 1.3:+57836940 | MS.gene44048:intron |
| AGGTGGAGAGAAAGGTTACC+CGG | 0.604674 | 1.3:+57837354 | MS.gene44048:CDS |
| ATCGGTGCTATCAATAACAA+AGG | 0.618733 | 1.3:+57835953 | MS.gene44048:CDS |
| CATTCCAGAAGAAGTAAACA+AGG | 0.620907 | 1.3:-57836988 | None:intergenic |
| CACAAGTTCCACTTCAAGCG+AGG | 0.621744 | 1.3:-57837270 | None:intergenic |
| TATGATATAAGAGCGACCAT+TGG | 0.623291 | 1.3:-57836132 | None:intergenic |
| TGATCAGTGTCGATGAACAA+CGG | 0.625959 | 1.3:-57837240 | None:intergenic |
| ATAACATACTTGTAAAACGC+AGG | 0.629597 | 1.3:-57837463 | None:intergenic |
| GCAGTGGAAGATAAAAGGCA+TGG | 0.634056 | 1.3:-57837675 | None:intergenic |
| TGTTCATGTATCATTCTAGG+TGG | 0.650713 | 1.3:+57837337 | MS.gene44048:CDS |
| AGAAATGTAATATACAGCAG+TGG | 0.653445 | 1.3:-57837691 | None:intergenic |
| CAATATGAGCCCATAAACAA+CGG | 0.679882 | 1.3:-57837316 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGATGAAAACATCTTA+TGG | - | chr1.3:57836472-57836491 | None:intergenic | 20.0% |
| !! | AATTAAGCTGTTTATCTAAA+TGG | + | chr1.3:57836342-57836361 | MS.gene44048:intron | 20.0% |
| !! | CTATATATCTATTTGCATTT+GGG | + | chr1.3:57837214-57837233 | MS.gene44048:CDS | 20.0% |
| !! | TATATATCTATTTGCATTTG+GGG | + | chr1.3:57837215-57837234 | MS.gene44048:CDS | 20.0% |
| !!! | CTTGTTTCATTTTTATTTCA+AGG | + | chr1.3:57836234-57836253 | MS.gene44048:intron | 20.0% |
| ! | AAGATAGCTTATGAAAATCT+AGG | + | chr1.3:57836506-57836525 | MS.gene44048:intron | 25.0% |
| ! | ACAAAAGAATTACCTTTAAC+AGG | - | chr1.3:57837127-57837146 | None:intergenic | 25.0% |
| ! | ATTGTTCTTCTTTGTATTAC+AGG | + | chr1.3:57837815-57837834 | MS.gene44048:intron | 25.0% |
| ! | GCTATATATCTATTTGCATT+TGG | + | chr1.3:57837213-57837232 | MS.gene44048:CDS | 25.0% |
| ! | TATTGTTCATGTATCATTCT+AGG | + | chr1.3:57837334-57837353 | MS.gene44048:CDS | 25.0% |
| ! | TTAGAGAACATATGTTCTTA+TGG | + | chr1.3:57836677-57836696 | MS.gene44048:intron | 25.0% |
| !! | ATTGAGTTGTATATCTAAAC+AGG | + | chr1.3:57836742-57836761 | MS.gene44048:intron | 25.0% |
| !! | TAGATTTTCATAAGCTATCT+TGG | - | chr1.3:57836507-57836526 | None:intergenic | 25.0% |
| !! | TATCTAAATGGACTTAGTTA+GGG | + | chr1.3:57836354-57836373 | MS.gene44048:intron | 25.0% |
| !! | TTATCTAAATGGACTTAGTT+AGG | + | chr1.3:57836353-57836372 | MS.gene44048:intron | 25.0% |
| !! | TTGAGTTGTATATCTAAACA+GGG | + | chr1.3:57836743-57836762 | MS.gene44048:intron | 25.0% |
| !! | TTTTCTCTTCGTTTTGTATT+TGG | + | chr1.3:57836076-57836095 | MS.gene44048:CDS | 25.0% |
| !!! | TAGTTCTGAACTTTATTCTT+TGG | + | chr1.3:57837588-57837607 | MS.gene44048:intron | 25.0% |
| AAGAAAGAAAGAATGAAACC+TGG | - | chr1.3:57836217-57836236 | None:intergenic | 30.0% | |
| AATCCCTACAATTAACTTAC+CGG | - | chr1.3:57837376-57837395 | None:intergenic | 30.0% | |
| ACTGCTGTATATTACATTTC+TGG | + | chr1.3:57837693-57837712 | MS.gene44048:CDS | 30.0% | |
| AGAAAGAAAGAATGAAACCT+GGG | - | chr1.3:57836216-57836235 | None:intergenic | 30.0% | |
| AGAAATGTAATATACAGCAG+TGG | - | chr1.3:57837694-57837713 | None:intergenic | 30.0% | |
| ATAACATACTTGTAAAACGC+AGG | - | chr1.3:57837466-57837485 | None:intergenic | 30.0% | |
| ATCAAAACCAACAATGATAC+CGG | - | chr1.3:57837102-57837121 | None:intergenic | 30.0% | |
| ATGCAGTATTGTTTGTAGTT+TGG | + | chr1.3:57837781-57837800 | MS.gene44048:intron | 30.0% | |
| ATTTGTTCTGGTGATAATTC+AGG | + | chr1.3:57836920-57836939 | MS.gene44048:intron | 30.0% | |
| TATACAATGACATAAGCATG+AGG | + | chr1.3:57836403-57836422 | MS.gene44048:intron | 30.0% | |
| TTACAATGCGCTTTACTTTA+TGG | + | chr1.3:57837731-57837750 | MS.gene44048:intron | 30.0% | |
| TTTCGTATTATGCTTCTCTT+TGG | + | chr1.3:57836156-57836175 | MS.gene44048:CDS | 30.0% | |
| ! | CTGGTTATGTATGATTAGTT+TGG | + | chr1.3:57837175-57837194 | MS.gene44048:intron | 30.0% |
| ! | TTATATCCTTTTTCTCCCTT+TGG | + | chr1.3:57836893-57836912 | MS.gene44048:intron | 30.0% |
| !! | TCTACTGGAGTTTTAACAAA+GGG | + | chr1.3:57835990-57836009 | MS.gene44048:CDS | 30.0% |
| !! | TTCTACTGGAGTTTTAACAA+AGG | + | chr1.3:57835989-57836008 | MS.gene44048:CDS | 30.0% |
| AAAATCTAGGTAGTCAATCC+CGG | + | chr1.3:57836519-57836538 | MS.gene44048:intron | 35.0% | |
| AACTAGAATAGCAGCAACTA+AGG | - | chr1.3:57836769-57836788 | None:intergenic | 35.0% | |
| AATCATACATAACCAGCACA+AGG | - | chr1.3:57837171-57837190 | None:intergenic | 35.0% | |
| ACAAAGAAGAACAATCAGTC+AGG | - | chr1.3:57837810-57837829 | None:intergenic | 35.0% | |
| ACCAGAACAAATTCAACCAA+AGG | - | chr1.3:57836912-57836931 | None:intergenic | 35.0% | |
| ATACAGCAGTGGAAGATAAA+AGG | - | chr1.3:57837683-57837702 | None:intergenic | 35.0% | |
| ATATTTCATTGTCCTTGTGC+TGG | + | chr1.3:57837156-57837175 | MS.gene44048:intron | 35.0% | |
| ATCCCTACAATTAACTTACC+GGG | - | chr1.3:57837375-57837394 | None:intergenic | 35.0% | |
| ATTCAACCAAAGGGAGAAAA+AGG | - | chr1.3:57836902-57836921 | None:intergenic | 35.0% | |
| CAATATGAGCCCATAAACAA+CGG | - | chr1.3:57837319-57837338 | None:intergenic | 35.0% | |
| CATTCCAGAAGAAGTAAACA+AGG | - | chr1.3:57836991-57837010 | None:intergenic | 35.0% | |
| CCAGAACAAATTCAACCAAA+GGG | - | chr1.3:57836911-57836930 | None:intergenic | 35.0% | |
| CTGTGTTTACTTTATCTCAC+AGG | + | chr1.3:57837626-57837645 | MS.gene44048:intron | 35.0% | |
| GAAGATTCTTCTTCTTCTAC+TGG | + | chr1.3:57835975-57835994 | MS.gene44048:CDS | 35.0% | |
| GTTCTTCTTTGTATTACAGG+AGG | + | chr1.3:57837818-57837837 | MS.gene44048:intron | 35.0% | |
| TACCCGGTAAGTTAATTGTA+GGG | + | chr1.3:57837370-57837389 | MS.gene44048:intron | 35.0% | |
| TATGATATAAGAGCGACCAT+TGG | - | chr1.3:57836135-57836154 | None:intergenic | 35.0% | |
| TGTTCATGTATCATTCTAGG+TGG | + | chr1.3:57837337-57837356 | MS.gene44048:CDS | 35.0% | |
| TTACCCGGTAAGTTAATTGT+AGG | + | chr1.3:57837369-57837388 | MS.gene44048:intron | 35.0% | |
| ! | ACACGAACTTTTGGTATATC+CGG | + | chr1.3:57837080-57837099 | MS.gene44048:CDS | 35.0% |
| ! | AGCTTTTACAAACTCACCAA+TGG | + | chr1.3:57836116-57836135 | MS.gene44048:CDS | 35.0% |
| ! | AGTTTGGCGTTTTCTTTGTT+AGG | + | chr1.3:57837191-57837210 | MS.gene44048:intron | 35.0% |
| ! | TTGTCCTTGTTTACTTCTTC+TGG | + | chr1.3:57836984-57837003 | MS.gene44048:CDS | 35.0% |
| !! | ATCGGTGCTATCAATAACAA+AGG | + | chr1.3:57835953-57835972 | MS.gene44048:CDS | 35.0% |
| !! | TACTCTGAAATGAAAGATGC+TGG | + | chr1.3:57837867-57837886 | MS.gene44048:CDS | 35.0% |
| !!! | ATTTCTGGCAGACTTTTTTC+AGG | + | chr1.3:57837708-57837727 | MS.gene44048:CDS | 35.0% |
| !!! | TGGTTTTGATGTCCTGTTAA+AGG | + | chr1.3:57837112-57837131 | MS.gene44048:CDS | 35.0% |
| !!! | TGGTTTTTTCGAATCAGACT+GGG | + | chr1.3:57837887-57837906 | MS.gene44048:CDS | 35.0% |
| !!! | TTGCTGGCTTTTTTACTTCA+GGG | + | chr1.3:57837029-57837048 | MS.gene44048:CDS | 35.0% |
| ACATAAGCATGAGGCTGTTT+GGG | + | chr1.3:57836412-57836431 | MS.gene44048:intron | 40.0% | |
| ATCATTCTAGGTGGAGAGAA+AGG | + | chr1.3:57837346-57837365 | MS.gene44048:CDS | 40.0% | |
| CAATTGCATTGTTTGCTTGC+GGG | + | chr1.3:57837506-57837525 | MS.gene44048:CDS | 40.0% | |
| CTTCAGGGAAATAATGCAAG+TGG | + | chr1.3:57837044-57837063 | MS.gene44048:CDS | 40.0% | |
| GCAATTGCATTGTTTGCTTG+CGG | + | chr1.3:57837505-57837524 | MS.gene44048:CDS | 40.0% | |
| GGTATATCCGGTATCATTGT+TGG | + | chr1.3:57837092-57837111 | MS.gene44048:CDS | 40.0% | |
| TAACAAAGGGATTCACCGAT+TGG | + | chr1.3:57836003-57836022 | MS.gene44048:CDS | 40.0% | |
| TCTGGTGATAATTCAGGCAT+GGG | + | chr1.3:57836926-57836945 | MS.gene44048:intron | 40.0% | |
| TTAGCATTCTCAATCTCGCT+TGG | + | chr1.3:57836183-57836202 | MS.gene44048:intron | 40.0% | |
| TTCTGGTGATAATTCAGGCA+TGG | + | chr1.3:57836925-57836944 | MS.gene44048:intron | 40.0% | |
| TTGTTCATCGACACTGATCA+TGG | + | chr1.3:57837243-57837262 | MS.gene44048:CDS | 40.0% | |
| ! | AACAAAGGGATTCACCGATT+GGG | + | chr1.3:57836004-57836023 | MS.gene44048:CDS | 40.0% |
| ! | ACAGGAGGAAGATTTTCACA+TGG | + | chr1.3:57837833-57837852 | MS.gene44048:intron | 40.0% |
| ! | CCCTTTGGTTGAATTTGTTC+TGG | + | chr1.3:57836908-57836927 | MS.gene44048:intron | 40.0% |
| !! | TGATCAGTGTCGATGAACAA+CGG | - | chr1.3:57837243-57837262 | None:intergenic | 40.0% |
| !! | TTCTTCTGGAATGCTGTTTC+TGG | + | chr1.3:57836998-57837017 | MS.gene44048:CDS | 40.0% |
| !!! | CTGGTTTTTTCGAATCAGAC+TGG | + | chr1.3:57837886-57837905 | MS.gene44048:CDS | 40.0% |
| !!! | CTTGCTGGCTTTTTTACTTC+AGG | + | chr1.3:57837028-57837047 | MS.gene44048:CDS | 40.0% |
| !!! | GAAGCATTGACACGAACTTT+TGG | + | chr1.3:57837071-57837090 | MS.gene44048:CDS | 40.0% |
| AATCCATCCTTTGCAATCCC+CGG | - | chr1.3:57836596-57836615 | None:intergenic | 45.0% | |
| ATAAGCATGAGGCTGTTTGG+GGG | + | chr1.3:57836414-57836433 | MS.gene44048:intron | 45.0% | |
| CATAAGCATGAGGCTGTTTG+GGG | + | chr1.3:57836413-57836432 | MS.gene44048:intron | 45.0% | |
| GACATAAGCATGAGGCTGTT+TGG | + | chr1.3:57836411-57836430 | MS.gene44048:intron | 45.0% | |
| GCAGTGGAAGATAAAAGGCA+TGG | - | chr1.3:57837678-57837697 | None:intergenic | 45.0% | |
| GGACTTAGTTAGGGTCTGTT+TGG | + | chr1.3:57836363-57836382 | MS.gene44048:intron | 45.0% | |
| GTGACACTCGAAAACCCAAT+CGG | - | chr1.3:57836021-57836040 | None:intergenic | 45.0% | |
| TCGCTTGAAGTGGAACTTGT+GGG | + | chr1.3:57837272-57837291 | MS.gene44048:CDS | 45.0% | |
| ! | TTCCATGTTAGCTCTTTCCC+AGG | - | chr1.3:57836960-57836979 | None:intergenic | 45.0% |
| !! | ATCCCGTTATCCCACTTTTG+GGG | - | chr1.3:57836556-57836575 | None:intergenic | 45.0% |
| !! | GATCAGTGTCGATGAACAAC+GGG | - | chr1.3:57837242-57837261 | None:intergenic | 45.0% |
| !! | GATCCCGTTATCCCACTTTT+GGG | - | chr1.3:57836557-57836576 | None:intergenic | 45.0% |
| !!! | ATTGGGTTTTCGAGTGTCAC+GGG | + | chr1.3:57836021-57836040 | MS.gene44048:CDS | 45.0% |
| !!! | GATTGGGTTTTCGAGTGTCA+CGG | + | chr1.3:57836020-57836039 | MS.gene44048:CDS | 45.0% |
| !!! | TTTTCGAGTGTCACGGGTTT+TGG | + | chr1.3:57836027-57836046 | MS.gene44048:CDS | 45.0% |
| AACGCAGGTCTTGCTGCAAA+AGG | - | chr1.3:57837451-57837470 | None:intergenic | 50.0% | |
| AGGCTGTTTGGGGGAACTTA+TGG | + | chr1.3:57836423-57836442 | MS.gene44048:intron | 50.0% | |
| AGGTAGTCAATCCCGGATAG+CGG | + | chr1.3:57836526-57836545 | MS.gene44048:intron | 50.0% | |
| AGGTGGAGAGAAAGGTTACC+CGG | + | chr1.3:57837354-57837373 | MS.gene44048:CDS | 50.0% | |
| ATCCCAGTTAGCAGGATCAC+CGG | + | chr1.3:57836574-57836593 | MS.gene44048:intron | 50.0% | |
| ATGGTACTCCTCGCTTGAAG+TGG | + | chr1.3:57837262-57837281 | MS.gene44048:CDS | 50.0% | |
| CACAAGTTCCACTTCAAGCG+AGG | - | chr1.3:57837273-57837292 | None:intergenic | 50.0% | |
| CGACCCCAAAAGTGGGATAA+CGG | + | chr1.3:57836550-57836569 | MS.gene44048:intron | 50.0% | |
| CTCCTGGGAAAGAGCTAACA+TGG | + | chr1.3:57836955-57836974 | MS.gene44048:CDS | 50.0% | |
| CTCGCTTGAAGTGGAACTTG+TGG | + | chr1.3:57837271-57837290 | MS.gene44048:CDS | 50.0% | |
| GACCCCAAAAGTGGGATAAC+GGG | + | chr1.3:57836551-57836570 | MS.gene44048:intron | 50.0% | |
| TCGCGCTCACCGTTGTTTAT+GGG | + | chr1.3:57837307-57837326 | MS.gene44048:CDS | 50.0% | |
| TTGTTTGCTTGCGGGCTTAC+TGG | + | chr1.3:57837514-57837533 | MS.gene44048:CDS | 50.0% | |
| ! | ATAACGGGATCCCAGTTAGC+AGG | + | chr1.3:57836566-57836585 | MS.gene44048:intron | 50.0% |
| ! | GGATCCCGTTATCCCACTTT+TGG | - | chr1.3:57836558-57836577 | None:intergenic | 50.0% |
| ! | GTTTCTGGAAGTGAGCTTGC+TGG | + | chr1.3:57837013-57837032 | MS.gene44048:CDS | 50.0% |
| AGGATCACCGGGGATTGCAA+AGG | + | chr1.3:57836586-57836605 | MS.gene44048:intron | 55.0% | |
| ATAGCGGTCGACCCCAAAAG+TGG | + | chr1.3:57836542-57836561 | MS.gene44048:intron | 55.0% | |
| CTCGCGCTCACCGTTGTTTA+TGG | + | chr1.3:57837306-57837325 | MS.gene44048:CDS | 55.0% | |
| GCTTGCGGGCTTACTGGAAA+CGG | + | chr1.3:57837520-57837539 | MS.gene44048:CDS | 55.0% | |
| TAGCGGTCGACCCCAAAAGT+GGG | + | chr1.3:57836543-57836562 | MS.gene44048:intron | 55.0% | |
| TCACCGGGGATTGCAAAGGA+TGG | + | chr1.3:57836590-57836609 | MS.gene44048:intron | 55.0% | |
| TCCCAGTTAGCAGGATCACC+GGG | + | chr1.3:57836575-57836594 | MS.gene44048:intron | 55.0% | |
| !!! | ACGGCGCTGGTTTTGGTTTC+TGG | + | chr1.3:57837539-57837558 | MS.gene44048:CDS | 55.0% |
| !!! | ACTGGAAACGGCGCTGGTTT+TGG | + | chr1.3:57837532-57837551 | MS.gene44048:CDS | 55.0% |
| !!! | TCTCGCTTGGTGCTTTTCCC+AGG | + | chr1.3:57836196-57836215 | MS.gene44048:intron | 55.0% |
| !!! | TTTTGGGGTCGACCGCTATC+CGG | - | chr1.3:57836541-57836560 | None:intergenic | 55.0% |
| CCCAGTTAGCAGGATCACCG+GGG | + | chr1.3:57836576-57836595 | MS.gene44048:intron | 60.0% | |
| CCCCGGTGATCCTGCTAACT+GGG | - | chr1.3:57836579-57836598 | None:intergenic | 60.0% | |
| TCCCCGGTGATCCTGCTAAC+TGG | - | chr1.3:57836580-57836599 | None:intergenic | 60.0% | |
| ! | TTTGGGGTCGACCGCTATCC+GGG | - | chr1.3:57836540-57836559 | None:intergenic | 60.0% |
| !! | AGGCATGGGAGTGCTCTCCT+GGG | + | chr1.3:57836940-57836959 | MS.gene44048:intron | 60.0% |
| CAACGGTGAGCGCGAGCTTG+TGG | - | chr1.3:57837302-57837321 | None:intergenic | 65.0% | |
| GGGCTTACTGGAAACGGCGC+TGG | + | chr1.3:57837526-57837545 | MS.gene44048:CDS | 65.0% | |
| !! | CAGGCATGGGAGTGCTCTCC+TGG | + | chr1.3:57836939-57836958 | MS.gene44048:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 57835942 | 57837914 | 57835942 | ID=MS.gene44048 |
| chr1.3 | mRNA | 57835942 | 57837914 | 57835942 | ID=MS.gene44048.t1;Parent=MS.gene44048 |
| chr1.3 | exon | 57835942 | 57836181 | 57835942 | ID=MS.gene44048.t1.exon1;Parent=MS.gene44048.t1 |
| chr1.3 | CDS | 57835942 | 57836181 | 57835942 | ID=cds.MS.gene44048.t1;Parent=MS.gene44048.t1 |
| chr1.3 | exon | 57836942 | 57837133 | 57836942 | ID=MS.gene44048.t1.exon2;Parent=MS.gene44048.t1 |
| chr1.3 | CDS | 57836942 | 57837133 | 57836942 | ID=cds.MS.gene44048.t1;Parent=MS.gene44048.t1 |
| chr1.3 | exon | 57837213 | 57837375 | 57837213 | ID=MS.gene44048.t1.exon3;Parent=MS.gene44048.t1 |
| chr1.3 | CDS | 57837213 | 57837375 | 57837213 | ID=cds.MS.gene44048.t1;Parent=MS.gene44048.t1 |
| chr1.3 | exon | 57837458 | 57837560 | 57837458 | ID=MS.gene44048.t1.exon4;Parent=MS.gene44048.t1 |
| chr1.3 | CDS | 57837458 | 57837560 | 57837458 | ID=cds.MS.gene44048.t1;Parent=MS.gene44048.t1 |
| chr1.3 | exon | 57837648 | 57837729 | 57837648 | ID=MS.gene44048.t1.exon5;Parent=MS.gene44048.t1 |
| chr1.3 | CDS | 57837648 | 57837729 | 57837648 | ID=cds.MS.gene44048.t1;Parent=MS.gene44048.t1 |
| chr1.3 | exon | 57837837 | 57837914 | 57837837 | ID=MS.gene44048.t1.exon6;Parent=MS.gene44048.t1 |
| chr1.3 | CDS | 57837837 | 57837914 | 57837837 | ID=cds.MS.gene44048.t1;Parent=MS.gene44048.t1 |
| Gene Sequence |
| Protein sequence |
