Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44212.t1 | XP_003629258.1 | 96.9 | 195 | 6 | 0 | 6 | 200 | 7 | 201 | 7.30E-100 | 373.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44212.t1 | G7LB61 | 96.9 | 195 | 6 | 0 | 6 | 200 | 7 | 201 | 5.3e-100 | 373.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05087 | MS.gene44212 | 0.806265 | 8.95E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44212.t1 | MTR_8g075110 | 95.522 | 201 | 8 | 1 | 1 | 200 | 1 | 201 | 2.16e-137 | 382 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44212.t1 | AT5G66090 | 66.258 | 163 | 49 | 2 | 43 | 200 | 49 | 210 | 1.94e-75 | 226 |
Find 57 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGCTGATGAACTTAATT+TGG | 0.180753 | 8.1:-31928728 | MS.gene44212:CDS |
| TTGAAGAATAGGGAGGGTTT+TGG | 0.277998 | 8.1:+31931918 | None:intergenic |
| TTTAGTTCCCTCAGAGAGAT+AGG | 0.318311 | 8.1:+31931534 | None:intergenic |
| GAGGGTGTGAAGTCGGGAAG+GGG | 0.335959 | 8.1:+31931857 | None:intergenic |
| AGGGTGTGAAGTCGGGAAGG+GGG | 0.337342 | 8.1:+31931858 | None:intergenic |
| AGTAAGCCAACAGCAATAAT+TGG | 0.349886 | 8.1:-31928754 | MS.gene44212:CDS |
| GGGTGTGAAGTCGGGAAGGG+GGG | 0.386173 | 8.1:+31931859 | None:intergenic |
| TGGGTGTGTTATTGAAGAAT+AGG | 0.393378 | 8.1:+31931907 | None:intergenic |
| GGTGGGGAGGGTGTGAAGTC+GGG | 0.401871 | 8.1:+31931851 | None:intergenic |
| TGATGAACTTAATTTGGATT+TGG | 0.404360 | 8.1:-31928722 | MS.gene44212:CDS |
| AGATAAATGCCAACGGATGC+TGG | 0.406698 | 8.1:+31930613 | None:intergenic |
| ATTGCCTTAGCTAACAAGTA+TGG | 0.418236 | 8.1:-31930837 | MS.gene44212:CDS |
| ACCCTCCCCACCAGGATCAT+TGG | 0.426256 | 8.1:-31931840 | MS.gene44212:intron |
| TCTCTCTGAGGGAACTAAAC+AGG | 0.436554 | 8.1:-31931530 | MS.gene44212:intron |
| GGGTGTGTTATTGAAGAATA+GGG | 0.438335 | 8.1:+31931908 | None:intergenic |
| TCAGTAGCTACAGCAACTTC+AGG | 0.444631 | 8.1:+31931607 | None:intergenic |
| AAGTGGGAGGTGATGGAAAT+GGG | 0.445737 | 8.1:+31931888 | None:intergenic |
| TACAAATTGCTTGAGCGGCT+TGG | 0.450205 | 8.1:-31928784 | MS.gene44212:CDS |
| GCCAACGGATGCTGGATAGT+TGG | 0.451723 | 8.1:+31930621 | None:intergenic |
| CCAACGGATGCTGGATAGTT+GGG | 0.456468 | 8.1:+31930622 | None:intergenic |
| GATAGTTGGGTCTCATGCTC+AGG | 0.456507 | 8.1:+31930635 | None:intergenic |
| GGGAGGGTGTGAAGTCGGGA+AGG | 0.458649 | 8.1:+31931855 | None:intergenic |
| GGAGGGTGTGAAGTCGGGAA+GGG | 0.463065 | 8.1:+31931856 | None:intergenic |
| TTGCTTGAGCGGCTTGGTGA+TGG | 0.467825 | 8.1:-31928778 | MS.gene44212:CDS |
| AAAGTGGGAGGTGATGGAAA+TGG | 0.468946 | 8.1:+31931887 | None:intergenic |
| GGAGCTGACATTACAGTTGT+AGG | 0.469978 | 8.1:-31930816 | MS.gene44212:intron |
| TGGCAAAAGCATGACAGGAC+AGG | 0.472545 | 8.1:+31928633 | None:intergenic |
| ACATCGCCAATTATTGCTGT+TGG | 0.484894 | 8.1:+31928748 | None:intergenic |
| ACCAATGATCCTGGTGGGGA+GGG | 0.491868 | 8.1:+31931839 | None:intergenic |
| ATCCGTTGGCATTTATCTGA+AGG | 0.506635 | 8.1:-31930608 | MS.gene44212:intron |
| TGGTGGGGAGGGTGTGAAGT+CGG | 0.513130 | 8.1:+31931850 | None:intergenic |
| GACTTCACACCCTCCCCACC+AGG | 0.519206 | 8.1:-31931848 | MS.gene44212:CDS |
| TACAATGGCAAAAGCATGAC+AGG | 0.519854 | 8.1:+31928628 | None:intergenic |
| TTAGTTCCCTCAGAGAGATA+GGG | 0.523045 | 8.1:+31931535 | None:intergenic |
| TGCTTGAGCGGCTTGGTGAT+GGG | 0.524122 | 8.1:-31928777 | MS.gene44212:CDS |
| AGTTATATTACCAATGATCC+TGG | 0.538740 | 8.1:+31931830 | None:intergenic |
| AGCTCCATACTTGTTAGCTA+AGG | 0.544707 | 8.1:+31930833 | None:intergenic |
| GTGTTATTGAAGAATAGGGA+GGG | 0.550609 | 8.1:+31931912 | None:intergenic |
| ACAGCAACTTCAGGTTCTTG+TGG | 0.551790 | 8.1:+31931616 | None:intergenic |
| ATATTACCAATGATCCTGGT+GGG | 0.557905 | 8.1:+31931834 | None:intergenic |
| TACCAATGATCCTGGTGGGG+AGG | 0.564673 | 8.1:+31931838 | None:intergenic |
| GGATTTGGTAGTTATTAGCA+TGG | 0.566741 | 8.1:-31928707 | MS.gene44212:CDS |
| AGGACTACAAATTGCTTGAG+CGG | 0.586994 | 8.1:-31928789 | MS.gene44212:CDS |
| CTACAAAATGCGAACTACAA+TGG | 0.587815 | 8.1:+31928613 | None:intergenic |
| CCCAACTATCCAGCATCCGT+TGG | 0.587965 | 8.1:-31930622 | MS.gene44212:CDS |
| GGCAAAAGCATGACAGGACA+GGG | 0.588085 | 8.1:+31928634 | None:intergenic |
| AGAAAACCCTATCTCTCTGA+GGG | 0.601139 | 8.1:-31931541 | MS.gene44212:CDS |
| AGTTATCGATGAACAGCAGA+AGG | 0.615289 | 8.1:-31930666 | MS.gene44212:CDS |
| GAGGGTTTGACGAGTTGAAG+CGG | 0.621708 | 8.1:+31931951 | None:intergenic |
| TATTACCAATGATCCTGGTG+GGG | 0.632686 | 8.1:+31931835 | None:intergenic |
| TGGCAGAGTCATGAACGCCA+TGG | 0.640926 | 8.1:+31931974 | None:intergenic |
| AACCTTCAGATAAATGCCAA+CGG | 0.643797 | 8.1:+31930606 | None:intergenic |
| ATACTTGTTAGCTAAGGCAA+TGG | 0.644889 | 8.1:+31930839 | None:intergenic |
| TGTGTTATTGAAGAATAGGG+AGG | 0.650429 | 8.1:+31931911 | None:intergenic |
| TAGAAAACCCTATCTCTCTG+AGG | 0.651248 | 8.1:-31931542 | MS.gene44212:CDS |
| TATATTACCAATGATCCTGG+TGG | 0.656745 | 8.1:+31931833 | None:intergenic |
| GGTTTGACGAGTTGAAGCGG+TGG | 0.698692 | 8.1:+31931954 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAATTATCTTTTTGTT+AGG | - | chr8.1:31929725-31929744 | MS.gene44212:intron | 10.0% |
| !!! | TATGTAAATATTTTTGTTAT+TGG | - | chr8.1:31930998-31931017 | MS.gene44212:intron | 10.0% |
| !! | AAATTCATAATATCAAAAAG+AGG | + | chr8.1:31929837-31929856 | None:intergenic | 15.0% |
| !! | AAGAAACTATAATAATTTCT+TGG | + | chr8.1:31928821-31928840 | None:intergenic | 15.0% |
| !! | TAAGAATTTAGATTCTATAT+GGG | + | chr8.1:31929362-31929381 | None:intergenic | 15.0% |
| !! | TATTTAATAATGAAAAATGC+AGG | - | chr8.1:31931779-31931798 | MS.gene44212:intron | 15.0% |
| !! | TTAAGAATTTAGATTCTATA+TGG | + | chr8.1:31929363-31929382 | None:intergenic | 15.0% |
| !!! | ATATTATGAATTTTTTACTG+GGG | - | chr8.1:31929844-31929863 | MS.gene44212:intron | 15.0% |
| !!! | ATTTTTTCTTTTTAAAAGGT+TGG | - | chr8.1:31931434-31931453 | MS.gene44212:intron | 15.0% |
| !!! | CTTTTTCTTTTCAATTTATT+TGG | - | chr8.1:31929097-31929116 | MS.gene44212:intron | 15.0% |
| !!! | GATATTATGAATTTTTTACT+GGG | - | chr8.1:31929843-31929862 | MS.gene44212:intron | 15.0% |
| !!! | TGATATTATGAATTTTTTAC+TGG | - | chr8.1:31929842-31929861 | MS.gene44212:intron | 15.0% |
| !! | TGGATGATTTAATCTAATAA+TGG | + | chr8.1:31930614-31930633 | None:intergenic | 20.0% |
| !!! | AATCTAATAATGGAAAAAAG+TGG | + | chr8.1:31930604-31930623 | None:intergenic | 20.0% |
| !!! | CATTTTTAAGTAAACATTCA+TGG | - | chr8.1:31931690-31931709 | MS.gene44212:intron | 20.0% |
| !!! | CCAATGTTTTATTCAAAAAA+CGG | + | chr8.1:31931532-31931551 | None:intergenic | 20.0% |
| !!! | TTGATTTTGTAGAAGTTTTT+AGG | + | chr8.1:31929549-31929568 | None:intergenic | 20.0% |
| !!! | TTTTTTTGCTTCTCTTTTTT+TGG | - | chr8.1:31930968-31930987 | MS.gene44212:intron | 20.0% |
| ! | AAACTTGTAAAGTGAAAAGT+AGG | - | chr8.1:31930100-31930119 | MS.gene44212:intron | 25.0% |
| ! | ATAAGACATAGTAAAGGATA+AGG | + | chr8.1:31931502-31931521 | None:intergenic | 25.0% |
| ! | ATTTGCTCATTGTAAAAAAC+AGG | + | chr8.1:31930820-31930839 | None:intergenic | 25.0% |
| ! | TAATAATGAAAAATGCAGGT+GGG | - | chr8.1:31931783-31931802 | MS.gene44212:intron | 25.0% |
| ! | TAATATGACAGTGTAAAAAG+TGG | - | chr8.1:31931142-31931161 | MS.gene44212:intron | 25.0% |
| ! | TTAATAATGAAAAATGCAGG+TGG | - | chr8.1:31931782-31931801 | MS.gene44212:intron | 25.0% |
| ! | TTATTTGTAATGTACCTTCA+AGG | + | chr8.1:31930252-31930271 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr8.1:31929646-31929665 | MS.gene44212:intron | 25.0% |
| !! | ATTGAGTAACAGATTTTAAG+TGG | - | chr8.1:31931465-31931484 | MS.gene44212:intron | 25.0% |
| !! | TGATGAACTTAATTTGGATT+TGG | - | chr8.1:31931877-31931896 | MS.gene44212:CDS | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | - | chr8.1:31929647-31929666 | MS.gene44212:intron | 25.0% |
| !!! | ATTTGTTGAGTTTTTTTGTG+TGG | - | chr8.1:31930041-31930060 | MS.gene44212:intron | 25.0% |
| !!! | CCGTTTTTTGAATAAAACAT+TGG | - | chr8.1:31931529-31931548 | MS.gene44212:intron | 25.0% |
| !!! | TAGAGTTGATGAGTTAAATT+GGG | - | chr8.1:31931083-31931102 | MS.gene44212:intron | 25.0% |
| !!! | TTTAAGGGTCCATTTTTTAT+GGG | - | chr8.1:31931184-31931203 | MS.gene44212:intron | 25.0% |
| !!! | TTTGATTTGCTACAAAATGA+AGG | + | chr8.1:31931580-31931599 | None:intergenic | 25.0% |
| !!! | TTTTAAGGGTCCATTTTTTA+TGG | - | chr8.1:31931183-31931202 | MS.gene44212:intron | 25.0% |
| ACCATTGACGAATAAATCAA+TGG | + | chr8.1:31930183-31930202 | None:intergenic | 30.0% | |
| AGAAAGAAAATATGAGAGAG+AGG | + | chr8.1:31930699-31930718 | None:intergenic | 30.0% | |
| AGTTATATTACCAATGATCC+TGG | + | chr8.1:31928772-31928791 | None:intergenic | 30.0% | |
| ATCAATTTCTACTAGGATTG+TGG | - | chr8.1:31930919-31930938 | MS.gene44212:intron | 30.0% | |
| ATGATTGCTTATGTATTTGG+AGG | - | chr8.1:31930148-31930167 | MS.gene44212:intron | 30.0% | |
| ATGTACACACAGTGAATTAT+CGG | - | chr8.1:31930528-31930547 | MS.gene44212:intron | 30.0% | |
| ATTACCAAACACACGATAAA+AGG | - | chr8.1:31930505-31930524 | MS.gene44212:intron | 30.0% | |
| CAATTTCATTAACGAAAGTC+TGG | - | chr8.1:31929286-31929305 | MS.gene44212:intron | 30.0% | |
| CATGCAATAAGACATAGTAA+AGG | + | chr8.1:31931508-31931527 | None:intergenic | 30.0% | |
| CTCATGATTGCTTATGTATT+TGG | - | chr8.1:31930145-31930164 | MS.gene44212:intron | 30.0% | |
| CTTTACAAGTTTACTCTCAA+CGG | + | chr8.1:31930092-31930111 | None:intergenic | 30.0% | |
| GTGTAAAAAGTGGTATATCA+AGG | - | chr8.1:31931152-31931171 | MS.gene44212:intron | 30.0% | |
| GTTCTTGTATGAAGTTGTAA+TGG | - | chr8.1:31929866-31929885 | MS.gene44212:intron | 30.0% | |
| GTTTCATCTGAATTCAGTTA+AGG | - | chr8.1:31928955-31928974 | MS.gene44212:intron | 30.0% | |
| TGAGTTAAATTGGGTTTAGT+TGG | - | chr8.1:31931092-31931111 | MS.gene44212:intron | 30.0% | |
| TGTTGCTGATGAACTTAATT+TGG | - | chr8.1:31931871-31931890 | MS.gene44212:CDS | 30.0% | |
| TTATGAACAATGTCATAAGC+TGG | + | chr8.1:31929465-31929484 | None:intergenic | 30.0% | |
| TTCTTTGATGCATGCAATTT+GGG | - | chr8.1:31928836-31928855 | MS.gene44212:intron | 30.0% | |
| TTTCTTTGATGCATGCAATT+TGG | - | chr8.1:31928835-31928854 | MS.gene44212:intron | 30.0% | |
| ! | ATTTTGTCTTGGGTAAGAAA+AGG | - | chr8.1:31931310-31931329 | MS.gene44212:intron | 30.0% |
| ! | GGTATTTTCATAAGCTATCT+TGG | + | chr8.1:31929528-31929547 | None:intergenic | 30.0% |
| ! | TAGGGTTTTCTATCAGTAAT+AGG | + | chr8.1:31929049-31929068 | None:intergenic | 30.0% |
| !! | GTAGAGTTGATGAGTTAAAT+TGG | - | chr8.1:31931082-31931101 | MS.gene44212:intron | 30.0% |
| !! | TCCATTGATTTATTCGTCAA+TGG | - | chr8.1:31930179-31930198 | MS.gene44212:intron | 30.0% |
| !!! | TGAGTTTTTTTGTGTGGATT+TGG | - | chr8.1:31930047-31930066 | MS.gene44212:intron | 30.0% |
| AACACCAGATATCATATCCT+AGG | + | chr8.1:31931211-31931230 | None:intergenic | 35.0% | |
| AACCTTCAGATAAATGCCAA+CGG | + | chr8.1:31929996-31930015 | None:intergenic | 35.0% | |
| ACACAGTGAATTATCGGATA+TGG | - | chr8.1:31930534-31930553 | MS.gene44212:intron | 35.0% | |
| ACACCAGATATCATATCCTA+GGG | + | chr8.1:31931210-31931229 | None:intergenic | 35.0% | |
| ACTGATAAACACCTTGACTT+AGG | - | chr8.1:31929174-31929193 | MS.gene44212:intron | 35.0% | |
| AGACCATGATAAAGTTTGGT+TGG | + | chr8.1:31930634-31930653 | None:intergenic | 35.0% | |
| AGTAAGCCAACAGCAATAAT+TGG | - | chr8.1:31931845-31931864 | MS.gene44212:CDS | 35.0% | |
| AGTTCCTTTCTCTTTCAAAG+TGG | + | chr8.1:31931037-31931056 | None:intergenic | 35.0% | |
| AGTTGGACTGTGATAAGATT+TGG | - | chr8.1:31931109-31931128 | MS.gene44212:intron | 35.0% | |
| ATATTACCAATGATCCTGGT+GGG | + | chr8.1:31928768-31928787 | None:intergenic | 35.0% | |
| ATTACATGCTTGCTTGGTAA+TGG | + | chr8.1:31930864-31930883 | None:intergenic | 35.0% | |
| ATTGCCTTAGCTAACAAGTA+TGG | - | chr8.1:31929762-31929781 | MS.gene44212:intron | 35.0% | |
| CAGCATCATCAATTTCTACT+AGG | - | chr8.1:31930912-31930931 | MS.gene44212:intron | 35.0% | |
| CATCCAACCAAACTTTATCA+TGG | - | chr8.1:31930628-31930647 | MS.gene44212:CDS | 35.0% | |
| CCTAACATGCAAAACTGTTT+GGG | - | chr8.1:31929426-31929445 | MS.gene44212:intron | 35.0% | |
| GGTTAGACCATGATAAAGTT+TGG | + | chr8.1:31930638-31930657 | None:intergenic | 35.0% | |
| GTTGATATTACTCGCTTTAG+AGG | - | chr8.1:31930201-31930220 | MS.gene44212:intron | 35.0% | |
| TAAATAATGAGCAGCTTGGT+TGG | - | chr8.1:31929396-31929415 | MS.gene44212:intron | 35.0% | |
| TAATAAAATTCATCCCCGAG+TGG | + | chr8.1:31931393-31931412 | None:intergenic | 35.0% | |
| TAGCTAAATAATGAGCAGCT+TGG | - | chr8.1:31929392-31929411 | MS.gene44212:intron | 35.0% | |
| TATATTACCAATGATCCTGG+TGG | + | chr8.1:31928769-31928788 | None:intergenic | 35.0% | |
| TCAAGGACCTCAACAAAAAA+AGG | + | chr8.1:31930235-31930254 | None:intergenic | 35.0% | |
| TCATAGAAATACCATGTGCA+AGG | - | chr8.1:31930779-31930798 | MS.gene44212:intron | 35.0% | |
| TGCTCATTGTAAAAAACAGG+TGG | + | chr8.1:31930817-31930836 | None:intergenic | 35.0% | |
| TGGAAAAAAGTGGTCTATCA+TGG | + | chr8.1:31930594-31930613 | None:intergenic | 35.0% | |
| TTCAACGAATCCAACCTAAA+AGG | + | chr8.1:31930563-31930582 | None:intergenic | 35.0% | |
| ! | ACATCCTTTTATCGTGTGTT+TGG | + | chr8.1:31930512-31930531 | None:intergenic | 35.0% |
| ! | ACTCGGGGATGAATTTTATT+AGG | - | chr8.1:31931392-31931411 | MS.gene44212:intron | 35.0% |
| ! | AGCTAATACTTGGAGCTTTT+GGG | - | chr8.1:31930428-31930447 | MS.gene44212:intron | 35.0% |
| ! | ATACTTGTTAGCTAAGGCAA+TGG | + | chr8.1:31929763-31929782 | None:intergenic | 35.0% |
| ! | ATCAAGGAGCAGTCTTTTTA+AGG | - | chr8.1:31931168-31931187 | MS.gene44212:intron | 35.0% |
| ! | CACATGGTATTTCTATGACA+TGG | + | chr8.1:31930777-31930796 | None:intergenic | 35.0% |
| ! | GGATTTGGTAGTTATTAGCA+TGG | - | chr8.1:31931892-31931911 | MS.gene44212:CDS | 35.0% |
| ! | GGGTGTGTTATTGAAGAATA+GGG | + | chr8.1:31928694-31928713 | None:intergenic | 35.0% |
| ! | GTGTTATTGAAGAATAGGGA+GGG | + | chr8.1:31928690-31928709 | None:intergenic | 35.0% |
| ! | TCAAGGAGCAGTCTTTTTAA+GGG | - | chr8.1:31931169-31931188 | MS.gene44212:intron | 35.0% |
| ! | TGGGTGTGTTATTGAAGAAT+AGG | + | chr8.1:31928695-31928714 | None:intergenic | 35.0% |
| ! | TGTGTTATTGAAGAATAGGG+AGG | + | chr8.1:31928691-31928710 | None:intergenic | 35.0% |
| ! | TTTTGGATTACATGCTTGCT+TGG | + | chr8.1:31930870-31930889 | None:intergenic | 35.0% |
| !! | CCATGGCATTATTTTGTCTT+GGG | - | chr8.1:31931300-31931319 | MS.gene44212:intron | 35.0% |
| !! | GTTCAACTACTATCGATTTG+TGG | - | chr8.1:31930336-31930355 | MS.gene44212:intron | 35.0% |
| !!! | AACCACAAGTCAGTGTTTTT+TGG | + | chr8.1:31929696-31929715 | None:intergenic | 35.0% |
| !!! | ACTGTGTCCTTTTTTTGTTG+AGG | - | chr8.1:31930225-31930244 | MS.gene44212:intron | 35.0% |
| !!! | TGTGGCTTTGGTTTTCATTT+TGG | + | chr8.1:31930887-31930906 | None:intergenic | 35.0% |
| !!! | TTTTTTGTTGAGGTCCTTGA+AGG | - | chr8.1:31930235-31930254 | MS.gene44212:intron | 35.0% |
| AAGACTGCAGAAATACAAGG+CGG | - | chr8.1:31929325-31929344 | MS.gene44212:intron | 40.0% | |
| AAGCACTTGTGAGACTGTTT+GGG | - | chr8.1:31929224-31929243 | MS.gene44212:intron | 40.0% | |
| AATGAGAGAGATGGAGTCAA+TGG | + | chr8.1:31930675-31930694 | None:intergenic | 40.0% | |
| ACATCGCCAATTATTGCTGT+TGG | + | chr8.1:31931854-31931873 | None:intergenic | 40.0% | |
| ACTTAAGAGCCAAGTGTGTT+AGG | - | chr8.1:31930382-31930401 | MS.gene44212:intron | 40.0% | |
| AGAAAACCCTATCTCTCTGA+GGG | - | chr8.1:31929058-31929077 | MS.gene44212:intron | 40.0% | |
| AGCATAGCAGTAAAGGGATT+GGG | + | chr8.1:31930752-31930771 | None:intergenic | 40.0% | |
| AGGACTACAAATTGCTTGAG+CGG | - | chr8.1:31931810-31931829 | MS.gene44212:intron | 40.0% | |
| AGGATTGTGGCATCATTTGA+AGG | - | chr8.1:31930932-31930951 | MS.gene44212:intron | 40.0% | |
| AGTTATCGATGAACAGCAGA+AGG | - | chr8.1:31929933-31929952 | MS.gene44212:intron | 40.0% | |
| ATCCGTTGGCATTTATCTGA+AGG | - | chr8.1:31929991-31930010 | MS.gene44212:intron | 40.0% | |
| ATCCTAGGGCCCATAAAAAA+TGG | + | chr8.1:31931196-31931215 | None:intergenic | 40.0% | |
| ATGAGAGAGATGGAGTCAAT+GGG | + | chr8.1:31930674-31930693 | None:intergenic | 40.0% | |
| ATTAGCTCCAACCTACTTTG+CGG | + | chr8.1:31930415-31930434 | None:intergenic | 40.0% | |
| CACAAAATTAACGCCCTGTT+TGG | + | chr8.1:31929663-31929682 | None:intergenic | 40.0% | |
| CCATACAAGTAATTGAGCCA+TGG | - | chr8.1:31931283-31931302 | MS.gene44212:intron | 40.0% | |
| CCATGGCTCAATTACTTGTA+TGG | + | chr8.1:31931286-31931305 | None:intergenic | 40.0% | |
| CCCAAGACAAAATAATGCCA+TGG | + | chr8.1:31931303-31931322 | None:intergenic | 40.0% | |
| CTTAAGAGCCAAGTGTGTTA+GGG | - | chr8.1:31930383-31930402 | MS.gene44212:intron | 40.0% | |
| GAAGCTTAAACATGAGGTAG+AGG | - | chr8.1:31930466-31930485 | MS.gene44212:intron | 40.0% | |
| GCCTAACATGCAAAACTGTT+TGG | - | chr8.1:31929425-31929444 | MS.gene44212:intron | 40.0% | |
| GGTATATAAGTGTGCGCTTA+AGG | - | chr8.1:31931711-31931730 | MS.gene44212:intron | 40.0% | |
| TAAGCACTTGTGAGACTGTT+TGG | - | chr8.1:31929223-31929242 | MS.gene44212:intron | 40.0% | |
| TAGAAAACCCTATCTCTCTG+AGG | - | chr8.1:31929057-31929076 | MS.gene44212:intron | 40.0% | |
| TATTACCAATGATCCTGGTG+GGG | + | chr8.1:31928767-31928786 | None:intergenic | 40.0% | |
| TCAAATGCACTGTCTGTGTT+AGG | - | chr8.1:31931595-31931614 | MS.gene44212:CDS | 40.0% | |
| TCCAAACAAGTCCTAAGTCA+AGG | + | chr8.1:31929188-31929207 | None:intergenic | 40.0% | |
| TGAGCAAATCCAAAACCGAT+AGG | - | chr8.1:31930831-31930850 | MS.gene44212:CDS | 40.0% | |
| TGGACTGTGATAAGATTTGG+TGG | - | chr8.1:31931112-31931131 | MS.gene44212:intron | 40.0% | |
| TTAAGAGCCAAGTGTGTTAG+GGG | - | chr8.1:31930384-31930403 | MS.gene44212:intron | 40.0% | |
| TTAGTTCCCTCAGAGAGATA+GGG | + | chr8.1:31929067-31929086 | None:intergenic | 40.0% | |
| ! | ACCTTGACTTAGGACTTGTT+TGG | - | chr8.1:31929184-31929203 | MS.gene44212:intron | 40.0% |
| ! | AGCTCCATACTTGTTAGCTA+AGG | + | chr8.1:31929769-31929788 | None:intergenic | 40.0% |
| ! | AGTAGGTTGGAGCTAATACT+TGG | - | chr8.1:31930418-31930437 | MS.gene44212:intron | 40.0% |
| ! | ATCGGATATGGAGTCCTTTT+AGG | - | chr8.1:31930546-31930565 | MS.gene44212:intron | 40.0% |
| ! | ATGGAGAGCATAGCAGTAAA+GGG | + | chr8.1:31930758-31930777 | None:intergenic | 40.0% |
| ! | CCCAAACAGTTTTGCATGTT+AGG | + | chr8.1:31929429-31929448 | None:intergenic | 40.0% |
| ! | GAGCTAATACTTGGAGCTTT+TGG | - | chr8.1:31930427-31930446 | MS.gene44212:intron | 40.0% |
| ! | GGACTGTGATAAGATTTGGT+GGG | - | chr8.1:31931113-31931132 | MS.gene44212:intron | 40.0% |
| ! | TACAATGGCAAAAGCATGAC+AGG | + | chr8.1:31931974-31931993 | None:intergenic | 40.0% |
| ! | TCAGCCACTTTGAAAGAGAA+AGG | - | chr8.1:31931030-31931049 | MS.gene44212:intron | 40.0% |
| ! | TTGAAGAATAGGGAGGGTTT+TGG | + | chr8.1:31928684-31928703 | None:intergenic | 40.0% |
| ! | TTTAGTTCCCTCAGAGAGAT+AGG | + | chr8.1:31929068-31929087 | None:intergenic | 40.0% |
| !! | AAAACACTGACTTGTGGTTG+TGG | - | chr8.1:31929697-31929716 | MS.gene44212:intron | 40.0% |
| !! | ATTGATGATGCTGTCAACTG+TGG | + | chr8.1:31930905-31930924 | None:intergenic | 40.0% |
| !! | CACCAAAAAACACTGACTTG+TGG | - | chr8.1:31929691-31929710 | MS.gene44212:intron | 40.0% |
| !! | GATATGGAGTCCTTTTAGGT+TGG | - | chr8.1:31930550-31930569 | MS.gene44212:intron | 40.0% |
| !! | GCCATGGCATTATTTTGTCT+TGG | - | chr8.1:31931299-31931318 | MS.gene44212:intron | 40.0% |
| !! | TTGGAGCTTTTGGGAAATTG+CGG | - | chr8.1:31930437-31930456 | MS.gene44212:intron | 40.0% |
| !!! | GGTTTTGGAGAGATAAGAGA+GGG | + | chr8.1:31928669-31928688 | None:intergenic | 40.0% |
| AGATAAATGCCAACGGATGC+TGG | + | chr8.1:31929989-31930008 | None:intergenic | 45.0% | |
| GAGCATAGCAGTAAAGGGAT+TGG | + | chr8.1:31930753-31930772 | None:intergenic | 45.0% | |
| GAGTGAGTGAAGAGCAAAAG+AGG | - | chr8.1:31931337-31931356 | MS.gene44212:intron | 45.0% | |
| GCCAAGACTGCAGAAATACA+AGG | - | chr8.1:31929322-31929341 | MS.gene44212:intron | 45.0% | |
| GGAGCTGACATTACAGTTGT+AGG | - | chr8.1:31929783-31929802 | MS.gene44212:intron | 45.0% | |
| GTTGAAAAAGTGGGAGGTGA+TGG | + | chr8.1:31928721-31928740 | None:intergenic | 45.0% | |
| TACAAATTGCTTGAGCGGCT+TGG | - | chr8.1:31931815-31931834 | MS.gene44212:intron | 45.0% | |
| TCAGTAGCTACAGCAACTTC+AGG | + | chr8.1:31928995-31929014 | None:intergenic | 45.0% | |
| TGAAGAGCAAAAGAGGACGA+AGG | - | chr8.1:31931344-31931363 | MS.gene44212:intron | 45.0% | |
| TGGGAGGAAGCTTAAACATG+AGG | - | chr8.1:31930460-31930479 | MS.gene44212:intron | 45.0% | |
| ! | ACAGCAACTTCAGGTTCTTG+TGG | + | chr8.1:31928986-31929005 | None:intergenic | 45.0% |
| ! | CATGGAGAGCATAGCAGTAA+AGG | + | chr8.1:31930759-31930778 | None:intergenic | 45.0% |
| ! | CGTGTGTTTGGTAATCCACT+GGG | + | chr8.1:31930500-31930519 | None:intergenic | 45.0% |
| ! | GCCTTGTATTTCTGCAGTCT+TGG | + | chr8.1:31929326-31929345 | None:intergenic | 45.0% |
| ! | GGTAATGGTAGGCTTCCTAT+CGG | + | chr8.1:31930849-31930868 | None:intergenic | 45.0% |
| ! | TCGTGTGTTTGGTAATCCAC+TGG | + | chr8.1:31930501-31930520 | None:intergenic | 45.0% |
| ! | TCTCTCTGAGGGAACTAAAC+AGG | - | chr8.1:31929069-31929088 | MS.gene44212:intron | 45.0% |
| !! | AAAGTGGGAGGTGATGGAAA+TGG | + | chr8.1:31928715-31928734 | None:intergenic | 45.0% |
| !! | AAGTGGGAGGTGATGGAAAT+GGG | + | chr8.1:31928714-31928733 | None:intergenic | 45.0% |
| !! | AGCTTTTGGGAAATTGCGGT+GGG | - | chr8.1:31930441-31930460 | MS.gene44212:intron | 45.0% |
| !! | CATGCTTGCTTGGTAATGGT+AGG | + | chr8.1:31930860-31930879 | None:intergenic | 45.0% |
| !! | GAAAAATGCAGGTGGGTTGA+AGG | - | chr8.1:31931790-31931809 | MS.gene44212:intron | 45.0% |
| !! | TCAATGGGTTAGATCTGGTG+TGG | + | chr8.1:31930659-31930678 | None:intergenic | 45.0% |
| !! | TGGAGTCAATGGGTTAGATC+TGG | + | chr8.1:31930664-31930683 | None:intergenic | 45.0% |
| !!! | GGGTTTTGGAGAGATAAGAG+AGG | + | chr8.1:31928670-31928689 | None:intergenic | 45.0% |
| !!! | GTCCATTTTTTATGGGCCCT+AGG | - | chr8.1:31931191-31931210 | MS.gene44212:intron | 45.0% |
| !!! | ATTTATTTTTTCTTTTTAAA+AGG | - | chr8.1:31931430-31931449 | MS.gene44212:intron | 5.0% |
| ACTTGCTTCAGCCTTGCACA+TGG | + | chr8.1:31930793-31930812 | None:intergenic | 50.0% | |
| AGAGCAAAAGAGGACGAAGG+AGG | - | chr8.1:31931347-31931366 | MS.gene44212:intron | 50.0% | |
| AGGAAGGACGAGGGAGATAA+GGG | - | chr8.1:31931367-31931386 | MS.gene44212:intron | 50.0% | |
| CAAAAGAGGACGAAGGAGGA+AGG | - | chr8.1:31931351-31931370 | MS.gene44212:intron | 50.0% | |
| CCAACGGATGCTGGATAGTT+GGG | + | chr8.1:31929980-31929999 | None:intergenic | 50.0% | |
| GAGAGAGGCAATGAGAGAGA+TGG | + | chr8.1:31930684-31930703 | None:intergenic | 50.0% | |
| GATAGTTGGGTCTCATGCTC+AGG | + | chr8.1:31929967-31929986 | None:intergenic | 50.0% | |
| GATGCTGTCAACTGTGGCTT+TGG | + | chr8.1:31930899-31930918 | None:intergenic | 50.0% | |
| GCTATCTTGGACAGTCTCAC+AGG | + | chr8.1:31929515-31929534 | None:intergenic | 50.0% | |
| GGAAGGGGGGTTGAAAAAGT+GGG | + | chr8.1:31928730-31928749 | None:intergenic | 50.0% | |
| GGGCCCTAGGATATGATATC+TGG | - | chr8.1:31931204-31931223 | MS.gene44212:intron | 50.0% | |
| ! | GAGGGTTTGACGAGTTGAAG+CGG | + | chr8.1:31928651-31928670 | None:intergenic | 50.0% |
| ! | GGCAAAAGCATGACAGGACA+GGG | + | chr8.1:31931968-31931987 | None:intergenic | 50.0% |
| ! | TGGCAAAAGCATGACAGGAC+AGG | + | chr8.1:31931969-31931988 | None:intergenic | 50.0% |
| !! | GAGCTTTTGGGAAATTGCGG+TGG | - | chr8.1:31930440-31930459 | MS.gene44212:intron | 50.0% |
| !! | TTTTGGGAAATTGCGGTGGG+AGG | - | chr8.1:31930444-31930463 | MS.gene44212:intron | 50.0% |
| !!! | GGTAGGCTTCCTATCGGTTT+TGG | + | chr8.1:31930843-31930862 | None:intergenic | 50.0% |
| ACCAATGATCCTGGTGGGGA+GGG | + | chr8.1:31928763-31928782 | None:intergenic | 55.0% | |
| AGGGGGGTTGAAAAAGTGGG+AGG | + | chr8.1:31928727-31928746 | None:intergenic | 55.0% | |
| CCCAACTATCCAGCATCCGT+TGG | - | chr8.1:31929977-31929996 | MS.gene44212:intron | 55.0% | |
| GAGGAAGGACGAGGGAGATA+AGG | - | chr8.1:31931366-31931385 | MS.gene44212:intron | 55.0% | |
| GCAGTAAAGGGATTGGGAGC+AGG | + | chr8.1:31930746-31930765 | None:intergenic | 55.0% | |
| GCCAACGGATGCTGGATAGT+TGG | + | chr8.1:31929981-31930000 | None:intergenic | 55.0% | |
| GGGAAGGGGGGTTGAAAAAG+TGG | + | chr8.1:31928731-31928750 | None:intergenic | 55.0% | |
| GGTCACACCCCTAACACACT+TGG | + | chr8.1:31930394-31930413 | None:intergenic | 55.0% | |
| GGTGTGACCGCAAAGTAGGT+TGG | - | chr8.1:31930405-31930424 | MS.gene44212:intron | 55.0% | |
| GTAGAGGTGATGTGACCCAG+TGG | - | chr8.1:31930482-31930501 | MS.gene44212:intron | 55.0% | |
| TACCAATGATCCTGGTGGGG+AGG | + | chr8.1:31928764-31928783 | None:intergenic | 55.0% | |
| ! | GGTTTGACGAGTTGAAGCGG+TGG | + | chr8.1:31928648-31928667 | None:intergenic | 55.0% |
| ! | TAGGGGTGTGACCGCAAAGT+AGG | - | chr8.1:31930401-31930420 | MS.gene44212:intron | 55.0% |
| !! | TGCTTGAGCGGCTTGGTGAT+GGG | - | chr8.1:31931822-31931841 | MS.gene44212:intron | 55.0% |
| !! | TTGCTTGAGCGGCTTGGTGA+TGG | - | chr8.1:31931821-31931840 | MS.gene44212:intron | 55.0% |
| ACCCTCCCCACCAGGATCAT+TGG | - | chr8.1:31928759-31928778 | MS.gene44212:CDS | 60.0% | |
| AGGACGAAGGAGGAAGGACG+AGG | - | chr8.1:31931357-31931376 | MS.gene44212:intron | 60.0% | |
| AGGGAGATAAGGGCCACTCG+GGG | - | chr8.1:31931377-31931396 | MS.gene44212:intron | 60.0% | |
| AGGGTGTGAAGTCGGGAAGG+GGG | + | chr8.1:31928744-31928763 | None:intergenic | 60.0% | |
| CGAGGGAGATAAGGGCCACT+CGG | - | chr8.1:31931375-31931394 | MS.gene44212:intron | 60.0% | |
| GAGGGAGATAAGGGCCACTC+GGG | - | chr8.1:31931376-31931395 | MS.gene44212:intron | 60.0% | |
| GGACGAAGGAGGAAGGACGA+GGG | - | chr8.1:31931358-31931377 | MS.gene44212:intron | 60.0% | |
| ! | GAGGGTGTGAAGTCGGGAAG+GGG | + | chr8.1:31928745-31928764 | None:intergenic | 60.0% |
| ! | GGAGGGTGTGAAGTCGGGAA+GGG | + | chr8.1:31928746-31928765 | None:intergenic | 60.0% |
| ! | TGGTGGGGAGGGTGTGAAGT+CGG | + | chr8.1:31928752-31928771 | None:intergenic | 60.0% |
| GACTTCACACCCTCCCCACC+AGG | - | chr8.1:31928751-31928770 | MS.gene44212:CDS | 65.0% | |
| GGGTGTGAAGTCGGGAAGGG+GGG | + | chr8.1:31928743-31928762 | None:intergenic | 65.0% | |
| ! | GGGAGGGTGTGAAGTCGGGA+AGG | + | chr8.1:31928747-31928766 | None:intergenic | 65.0% |
| ! | GGTGGGGAGGGTGTGAAGTC+GGG | + | chr8.1:31928751-31928770 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 31928627 | 31931994 | 31928627 | ID=MS.gene44212 |
| chr8.1 | mRNA | 31928627 | 31931994 | 31928627 | ID=MS.gene44212.t1;Parent=MS.gene44212 |
| chr8.1 | exon | 31931841 | 31931994 | 31931841 | ID=MS.gene44212.t1.exon1;Parent=MS.gene44212.t1 |
| chr8.1 | CDS | 31931841 | 31931994 | 31931841 | ID=cds.MS.gene44212.t1;Parent=MS.gene44212.t1 |
| chr8.1 | exon | 31931531 | 31931649 | 31931531 | ID=MS.gene44212.t1.exon2;Parent=MS.gene44212.t1 |
| chr8.1 | CDS | 31931531 | 31931649 | 31931531 | ID=cds.MS.gene44212.t1;Parent=MS.gene44212.t1 |
| chr8.1 | exon | 31930817 | 31930874 | 31930817 | ID=MS.gene44212.t1.exon3;Parent=MS.gene44212.t1 |
| chr8.1 | CDS | 31930817 | 31930874 | 31930817 | ID=cds.MS.gene44212.t1;Parent=MS.gene44212.t1 |
| chr8.1 | exon | 31930609 | 31930686 | 31930609 | ID=MS.gene44212.t1.exon4;Parent=MS.gene44212.t1 |
| chr8.1 | CDS | 31930609 | 31930686 | 31930609 | ID=cds.MS.gene44212.t1;Parent=MS.gene44212.t1 |
| chr8.1 | exon | 31928627 | 31928820 | 31928627 | ID=MS.gene44212.t1.exon5;Parent=MS.gene44212.t1 |
| chr8.1 | CDS | 31928627 | 31928820 | 31928627 | ID=cds.MS.gene44212.t1;Parent=MS.gene44212.t1 |
| Gene Sequence |
| Protein sequence |
