AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45027

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45027.t1 MTR_1g083840 97.885 520 10 1 1 520 85 603 0.0 1057
MS.gene45027.t1 MTR_2g006440 46.172 431 212 5 105 520 395 820 2.04e-129 405
MS.gene45027.t1 MTR_2g042440 42.961 412 216 8 114 515 38 440 1.99e-106 334
MS.gene45027.t1 MTR_2g042440 42.961 412 216 8 114 515 38 440 2.25e-106 334
MS.gene45027.t1 MTR_5g026590 40.046 437 219 11 84 515 60 458 7.68e-99 313
MS.gene45027.t1 MTR_3g063040 38.443 411 221 12 114 515 12 399 4.40e-76 257
MS.gene45027.t1 MTR_8g080160 36.957 368 209 10 100 456 253 608 7.87e-58 207
MS.gene45027.t1 MTR_1g083250 41.667 216 105 6 114 318 160 365 2.12e-39 151
MS.gene45027.t1 MTR_1g083250 37.931 145 78 2 300 444 478 610 2.36e-20 95.1
MS.gene45027.t1 MTR_1g083250 41.667 216 105 6 114 318 160 365 5.68e-39 151
MS.gene45027.t1 MTR_1g083250 33.796 216 122 6 300 515 478 672 5.34e-24 106
MS.gene45027.t1 MTR_1g083250 41.667 216 105 6 114 318 160 365 1.01e-38 151
MS.gene45027.t1 MTR_1g083250 33.945 218 119 7 300 515 478 672 4.63e-24 107
MS.gene45027.t1 MTR_2g032630 24.654 361 236 12 114 457 515 856 5.73e-15 78.6
MS.gene45027.t1 MTR_6g033070 25.641 351 224 10 103 433 146 479 9.65e-12 67.8
MS.gene45027.t1 MTR_6g005550 23.944 355 234 12 121 457 189 525 2.32e-11 67.0
MS.gene45027.t1 MTR_2g100230 24.924 329 216 11 121 433 120 433 3.99e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45027.t1 AT3G05740 67.416 534 156 4 1 518 75 606 0.0 728
MS.gene45027.t1 AT3G05740 70.518 502 143 3 20 518 22 521 0.0 727
MS.gene45027.t1 AT1G10930 44.912 452 231 5 82 520 417 863 6.84e-129 404
MS.gene45027.t1 AT1G31360 41.121 428 230 9 92 515 66 475 4.22e-109 335
MS.gene45027.t1 AT1G31360 41.121 428 230 9 92 515 66 475 4.22e-109 335
MS.gene45027.t1 AT1G31360 41.121 428 230 9 92 515 66 475 9.97e-109 335
MS.gene45027.t1 AT1G31360 41.121 428 230 9 92 515 66 475 1.44e-108 335
MS.gene45027.t1 AT1G31360 41.121 428 230 9 92 515 66 475 9.78e-108 335
MS.gene45027.t1 AT1G31360 41.121 428 230 9 92 515 66 475 3.79e-107 335
MS.gene45027.t1 AT1G31360 41.121 428 230 9 92 515 100 509 7.04e-107 335
MS.gene45027.t1 AT4G35740 43.564 404 218 7 114 515 32 427 6.94e-105 330
MS.gene45027.t1 AT1G31360 42.033 364 192 8 156 515 2 350 3.13e-92 293
MS.gene45027.t1 AT4G35740 42.687 335 183 6 183 515 7 334 1.29e-79 261
MS.gene45027.t1 AT1G27880 36.994 346 203 9 112 452 263 598 1.79e-55 200
MS.gene45027.t1 AT1G27880 36.994 346 203 9 112 452 263 598 1.96e-55 200
MS.gene45027.t1 AT5G27680 42.202 218 101 7 114 318 34 239 8.64e-39 151
MS.gene45027.t1 AT5G27680 38.286 175 94 6 343 515 371 533 6.31e-25 109
MS.gene45027.t1 AT5G27680 42.202 218 101 7 114 318 164 369 1.07e-38 151
MS.gene45027.t1 AT5G27680 42.202 218 101 7 114 318 164 369 1.10e-38 151
MS.gene45027.t1 AT5G27680 38.286 175 94 6 343 515 501 663 5.36e-25 109
MS.gene45027.t1 AT5G27680 42.202 218 101 7 114 318 164 369 1.10e-38 151
MS.gene45027.t1 AT5G27680 38.286 175 94 6 343 515 501 663 5.36e-25 109
MS.gene45027.t1 AT5G27680 42.202 218 101 7 114 318 164 369 1.10e-38 151
MS.gene45027.t1 AT5G27680 38.286 175 94 6 343 515 501 663 5.36e-25 109
MS.gene45027.t1 AT5G27680 42.202 218 101 7 114 318 164 369 1.10e-38 151
MS.gene45027.t1 AT5G27680 38.286 175 94 6 343 515 501 663 5.36e-25 109
MS.gene45027.t1 AT3G06480 23.301 412 271 14 72 465 420 804 4.21e-13 72.8
MS.gene45027.t1 AT2G33730 25.000 388 229 15 96 443 314 679 2.14e-11 67.0

Find 106 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGGAAACCAATCATTTAT+TGG 0.185337 1.3:-59483332 MS.gene45027:CDS
CCCAATAAATGATTGGTTTC+CGG 0.199025 1.3:+59483331 None:intergenic
ATCACTTCATACTTCAAATT+TGG 0.211438 1.3:+59481599 None:intergenic
TCCCTTACTTTCACTCATTC+AGG 0.226621 1.3:-59483673 MS.gene45027:CDS
GCCAATGGGGACATGATTTC+CGG 0.262665 1.3:-59481877 MS.gene45027:CDS
GCAACAGTACTGTGAATTAA+AGG 0.283775 1.3:-59480476 MS.gene45027:intron
AACTTGTTCCGTTGTTTCTT+AGG 0.287375 1.3:+59485110 None:intergenic
CCGGAAACCAATCATTTATT+GGG 0.287539 1.3:-59483331 MS.gene45027:CDS
CGGCCTGATTATCGGGGATT+AGG 0.296773 1.3:-59481857 MS.gene45027:CDS
TTGGGAAATGTTGTTATCTT+TGG 0.306162 1.3:-59484117 MS.gene45027:CDS
AACTCTCAGGGACAACTTGC+AGG 0.307906 1.3:-59483187 MS.gene45027:intron
ATAACACTTAACCTCAAGTT+TGG 0.310775 1.3:-59483642 MS.gene45027:CDS
GTATGTGCAACTATTGCTTT+TGG 0.328466 1.3:-59481353 MS.gene45027:CDS
GAATGAGAAATGTAAAATAA+AGG 0.338559 1.3:-59481456 MS.gene45027:CDS
GGCGCTAGATGATATTGAAT+TGG 0.341103 1.3:-59484136 MS.gene45027:CDS
AGTTGTCCAAGCTGCTTTAG+TGG 0.341995 1.3:+59481560 None:intergenic
AAACGGCCAAGGATATAAAA+AGG 0.351546 1.3:-59480536 MS.gene45027:CDS
GTTCTAATTACCTCACGAAC+TGG 0.353282 1.3:+59481773 None:intergenic
TTGGAGAACAGCTGCGGCTT+GGG 0.368836 1.3:+59483581 None:intergenic
TGATTTCCGGCCTGATTATC+GGG 0.374955 1.3:-59481864 MS.gene45027:CDS
GAAAGCTATTATCAAGAATC+AGG 0.385054 1.3:-59480643 MS.gene45027:CDS
CGGAACAAGTTTGTGGAGTT+GGG 0.387829 1.3:-59485098 MS.gene45027:CDS
GATCCTAATCCCCGATAATC+AGG 0.390569 1.3:+59481854 None:intergenic
CTCTACTAAAATCCTTCTTC+TGG 0.394859 1.3:+59480575 None:intergenic
TTAGAATCCCAATAAATGAT+TGG 0.397742 1.3:+59483324 None:intergenic
ATACTAACTTTGATGTTTCA+AGG 0.400385 1.3:-59485055 MS.gene45027:CDS
TATAGTACCACTGAGTTTGT+AGG 0.402046 1.3:+59485023 None:intergenic
GCAGCTTGGACAACTACTAA+TGG 0.404671 1.3:-59481552 MS.gene45027:CDS
ATGATTTCCGGCCTGATTAT+CGG 0.407709 1.3:-59481865 MS.gene45027:CDS
TTGATGAGGCACACTGTGTT+AGG 0.415168 1.3:-59483156 MS.gene45027:intron
CTACTGTAACTCCGGGTTGA+AGG 0.417144 1.3:+59483703 None:intergenic
TGGTTTCCGGCAATTCTCTC+AGG 0.421787 1.3:+59483344 None:intergenic
TCAAGCATGTAAAGCAGCTT+TGG 0.427504 1.3:-59484067 MS.gene45027:CDS
ACTCCGGGTTGAAGGGTTGC+TGG 0.427909 1.3:+59483711 None:intergenic
GTGACACCTGAGAGAATTGC+CGG 0.429060 1.3:-59483350 MS.gene45027:CDS
ATTCTTATGCCCACTGGTGG+TGG 0.438985 1.3:-59484027 MS.gene45027:CDS
TGGCAAATCTCTTTGCTATC+AGG 0.441663 1.3:-59484007 MS.gene45027:intron
ATCCTGAATGAGTGAAAGTA+AGG 0.442420 1.3:+59483671 None:intergenic
GTGAATCTCGCCTTAGCTCT+TGG 0.445529 1.3:+59483562 None:intergenic
AAATCCTCCTTTGCTGCAAA+AGG 0.447429 1.3:-59484192 MS.gene45027:CDS
GATAGAAATAACTGCAAATA+CGG 0.447780 1.3:-59480148 MS.gene45027:CDS
CTTGGAGAACAGCTGCGGCT+TGG 0.450143 1.3:+59483580 None:intergenic
ACGGAACAAGTTTGTGGAGT+TGG 0.452790 1.3:-59485099 MS.gene45027:CDS
CATTGCTCTATACCAGAAGA+AGG 0.455964 1.3:-59480587 MS.gene45027:CDS
AGCATATTACCATGCTGGCT+TGG 0.462100 1.3:-59481432 MS.gene45027:CDS
GCGCTAGATGATATTGAATT+GGG 0.462176 1.3:-59484135 MS.gene45027:CDS
GAGTTGCTGTTCAAAAGAAA+TGG 0.464725 1.3:-59481397 MS.gene45027:CDS
TCTCAGTTATGAAGAATTGA+AGG 0.464882 1.3:-59484157 MS.gene45027:CDS
TATCAAGAATCAGGAAGGGC+TGG 0.472191 1.3:-59480634 MS.gene45027:CDS
TACTGTAACTCCGGGTTGAA+GGG 0.482787 1.3:+59483704 None:intergenic
GTGCTTGACACGCGCGGTGA+TGG 0.485473 1.3:-59485167 MS.gene45027:CDS
CTTTCCACGTGTTCCTGTCA+TGG 0.490156 1.3:-59481819 MS.gene45027:CDS
CAAACACTACTTGAACACTT+TGG 0.494139 1.3:-59480181 MS.gene45027:CDS
AGATACAACTACTGTAACTC+CGG 0.502948 1.3:+59483695 None:intergenic
GAAACAACGGAACAAGTTTG+TGG 0.524272 1.3:-59485105 MS.gene45027:CDS
GTTGTATGCATGATAAGAAA+CGG 0.527572 1.3:-59480553 MS.gene45027:CDS
TATAGAGCAATGCAAACTGC+TGG 0.530222 1.3:+59480598 None:intergenic
GTTCAAGTAGTGTTTGTCTC+CGG 0.535138 1.3:+59480188 None:intergenic
GTGGCGGTCAATGCCATGAC+AGG 0.535402 1.3:+59481806 None:intergenic
AACTGGGTGAGTTGCAGTGG+CGG 0.535579 1.3:+59481790 None:intergenic
AAGTGGCATCACTCAGGGCT+CGG 0.537050 1.3:-59484238 MS.gene45027:CDS
CAGCTGTTCTCCAAGAGCTA+AGG 0.539604 1.3:-59483572 MS.gene45027:intron
TACTAACTTTGATGTTTCAA+GGG 0.539715 1.3:-59485054 MS.gene45027:CDS
TGGTAGAAGTGGCATCACTC+AGG 0.540653 1.3:-59484244 MS.gene45027:CDS
CTTTCAAGAACAATTGCATG+TGG 0.541349 1.3:+59481635 None:intergenic
TTGAACAGCAACTCTCTGGC+GGG 0.542476 1.3:+59481406 None:intergenic
GGCGGGCAGCCAAGCCAGCA+TGG 0.542973 1.3:+59481423 None:intergenic
TGAATGTTTAGGATGAATGC+CGG 0.543032 1.3:-59480207 MS.gene45027:intron
GAAATGGAATCGCAAGCTGT+TGG 0.548293 1.3:-59485203 MS.gene45027:CDS
TCTAAAATGCATGCATCAGA+AGG 0.553934 1.3:-59483306 MS.gene45027:intron
ACGAACTGGGTGAGTTGCAG+TGG 0.556223 1.3:+59481787 None:intergenic
TTTATTCTTATGCCCACTGG+TGG 0.556990 1.3:-59484030 MS.gene45027:CDS
GCTATTATCAAGAATCAGGA+AGG 0.558903 1.3:-59480639 MS.gene45027:CDS
TTTGAACAGCAACTCTCTGG+CGG 0.561773 1.3:+59481405 None:intergenic
TTCTAATTACCTCACGAACT+GGG 0.567701 1.3:+59481774 None:intergenic
TAGCAGGTATTCCAAACTTG+AGG 0.570780 1.3:+59483631 None:intergenic
GCCGGAAATCATGTCCCCAT+TGG 0.571092 1.3:+59481876 None:intergenic
AAGAGATTTGCCACCACCAG+TGG 0.577435 1.3:+59484017 None:intergenic
AAGGCAGCATATTACCATGC+TGG 0.578763 1.3:-59481437 MS.gene45027:CDS
AAGGAACCACTAAAGCAGCT+TGG 0.588455 1.3:-59481566 MS.gene45027:CDS
GTGTTATAGAATGGTAGAAG+TGG 0.590785 1.3:-59484255 MS.gene45027:intron
AAAGAAATGGCACGATGGAG+AGG 0.599308 1.3:-59481384 MS.gene45027:CDS
CTTCCAGCAACCCTTCAACC+CGG 0.599992 1.3:-59483714 MS.gene45027:CDS
TGAAGTGATTGTTAAGACAA+AGG 0.602910 1.3:-59481585 MS.gene45027:CDS
TCCTGAATGAGTGAAAGTAA+GGG 0.604891 1.3:+59483672 None:intergenic
GTCTTGAGACAGTTATCACA+AGG 0.608540 1.3:+59480118 None:intergenic
TTACATGCTTGATGCTGCAG+TGG 0.613311 1.3:+59484078 None:intergenic
CTAATCCCCGATAATCAGGC+CGG 0.622423 1.3:+59481858 None:intergenic
GGTAGAAGTGGCATCACTCA+GGG 0.624179 1.3:-59484243 MS.gene45027:CDS
GATTTCCGGCCTGATTATCG+GGG 0.626285 1.3:-59481863 MS.gene45027:CDS
TGCAACTCACCCAGTTCGTG+AGG 0.628045 1.3:-59481783 MS.gene45027:intron
GGGTTCTAGTGACGATGAGG+AGG 0.628459 1.3:-59485078 MS.gene45027:CDS
GATACAACTACTGTAACTCC+GGG 0.636084 1.3:+59483696 None:intergenic
AATCACGTGCTTGACACGCG+CGG 0.639782 1.3:-59485173 MS.gene45027:CDS
TAGCTCTTGGAGAACAGCTG+CGG 0.652447 1.3:+59483575 None:intergenic
TGCATGATAAGAAACGGCCA+AGG 0.654530 1.3:-59480547 MS.gene45027:CDS
AGAGATTTGCCACCACCAGT+GGG 0.661715 1.3:+59484018 None:intergenic
GTTGGGTTCTAGTGACGATG+AGG 0.673093 1.3:-59485081 MS.gene45027:CDS
CTATTATCAAGAATCAGGAA+GGG 0.675476 1.3:-59480638 MS.gene45027:CDS
GTTCAAAAGAAATGGCACGA+TGG 0.689785 1.3:-59481389 MS.gene45027:CDS
ACGATTCGCCTAAGAAACAA+CGG 0.697214 1.3:-59485118 MS.gene45027:CDS
AATGCCATGACAGGAACACG+TGG 0.700267 1.3:+59481815 None:intergenic
GATCGTTTCAAGAGTCAGTG+TGG 0.718119 1.3:-59481530 MS.gene45027:CDS
TCAACATCCTACAAACTCAG+TGG 0.729434 1.3:-59485030 MS.gene45027:intron
ACATACAAAAGCTTGCACGA+AGG 0.751325 1.3:+59483371 None:intergenic
TCTTGAGACAGTTATCACAA+GGG 0.756422 1.3:+59480119 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCATTAGTAATTAAAATTT+TGG + chr1.3:59482352-59482371 None:intergenic 10.0%
!! AATAATTATATGAATCCAAA+TGG + chr1.3:59485048-59485067 None:intergenic 15.0%
!! ATATCTTAAAATTAAAGGTA+TGG - chr1.3:59482420-59482439 MS.gene45027:intron 15.0%
!! ATTTAAAAAAAAAACCTTTC+AGG - chr1.3:59481847-59481866 MS.gene45027:CDS 15.0%
!! TAAATGATACTAATACTAAT+AGG + chr1.3:59481832-59481851 None:intergenic 15.0%
!! TAGTGATATCTTAAAATTAA+AGG - chr1.3:59482415-59482434 MS.gene45027:intron 15.0%
!! TTCAAAAAGTTATGAAATTT+AGG + chr1.3:59482450-59482469 None:intergenic 15.0%
!!! AGTAACACTATAATATTTTA+TGG + chr1.3:59483076-59483095 None:intergenic 15.0%
!!! ATTTTTAGTGATGAATTTTA+CGG - chr1.3:59484554-59484573 MS.gene45027:intron 15.0%
!!! TATAAAACATTTTCTTCTTT+AGG - chr1.3:59482703-59482722 MS.gene45027:intron 15.0%
!! AAAAGTTATGAAATTTAGGA+AGG + chr1.3:59482446-59482465 None:intergenic 20.0%
!! AAGCACAAAATAAAATTAAC+AGG + chr1.3:59481570-59481589 None:intergenic 20.0%
!! AGATAGAGAAGAATATAAAA+TGG - chr1.3:59480874-59480893 MS.gene45027:intron 20.0%
!! AGTTTATTACCATTGAAAAT+GGG - chr1.3:59485000-59485019 MS.gene45027:intron 20.0%
!! CAAAACAATATAATCATCAT+TGG + chr1.3:59481409-59481428 None:intergenic 20.0%
!! CTAAATTGTTACCTAAAATT+AGG - chr1.3:59483025-59483044 MS.gene45027:intron 20.0%
!! GAATGAGAAATGTAAAATAA+AGG - chr1.3:59483852-59483871 MS.gene45027:intron 20.0%
!! TATTCCATTTCTATAACAAA+AGG + chr1.3:59480674-59480693 None:intergenic 20.0%
!! TCTATATAATATAAGCACAA+TGG - chr1.3:59484415-59484434 MS.gene45027:intron 20.0%
!! TTATAAAGAACATGTATACA+AGG - chr1.3:59484254-59484273 MS.gene45027:intron 20.0%
!! TTTGTTTAATCTATTTGCAT+TGG - chr1.3:59480964-59480983 MS.gene45027:intron 20.0%
!!! ATATTATAGTGTTACTACAA+AGG - chr1.3:59483080-59483099 MS.gene45027:intron 20.0%
!!! ATTCACAAATATTTGAAACT+GGG + chr1.3:59480345-59480364 None:intergenic 20.0%
!!! CAGTAAATTGCTATTATATA+TGG - chr1.3:59483557-59483576 MS.gene45027:intron 20.0%
!!! GAAGAAAATGTTTTATATTC+AGG + chr1.3:59482700-59482719 None:intergenic 20.0%
!!! GTTATCTGAAATTAAGTTAA+GGG + chr1.3:59482799-59482818 None:intergenic 20.0%
!!! TAATTACTAATGAAGTATCA+TGG - chr1.3:59482358-59482377 MS.gene45027:intron 20.0%
!!! TATTCACAAATATTTGAAAC+TGG + chr1.3:59480346-59480365 None:intergenic 20.0%
!!! TTCAAATCGTAGAAATTTTT+CGG - chr1.3:59482888-59482907 MS.gene45027:intron 20.0%
!!! TTTACCTTTTGTTATAGAAA+TGG - chr1.3:59480667-59480686 MS.gene45027:CDS 20.0%
! AAAATGGATGTAAGCATATT+TGG - chr1.3:59480890-59480909 MS.gene45027:intron 25.0%
! AAAATTCTGCAAAATTGCAA+AGG + chr1.3:59484347-59484366 None:intergenic 25.0%
! AACATGCAAAAAGAAAAATC+AGG + chr1.3:59481346-59481365 None:intergenic 25.0%
! AACATTCAAACCAGATAAAA+TGG + chr1.3:59485089-59485108 None:intergenic 25.0%
! ACATGCAAAAAGAAAAATCA+GGG + chr1.3:59481345-59481364 None:intergenic 25.0%
! ACATTCAAACCAGATAAAAT+GGG + chr1.3:59485088-59485107 None:intergenic 25.0%
! ACATTCAAATGCTGAATTAA+CGG + chr1.3:59484485-59484504 None:intergenic 25.0%
! ATACTAACTTTGATGTTTCA+AGG - chr1.3:59480253-59480272 MS.gene45027:intron 25.0%
! ATCACTTCATACTTCAAATT+TGG + chr1.3:59483712-59483731 None:intergenic 25.0%
! CAGTTTATTACCATTGAAAA+TGG - chr1.3:59484999-59485018 MS.gene45027:intron 25.0%
! CTATGGATGAAAAATTAGTA+TGG - chr1.3:59480761-59480780 MS.gene45027:intron 25.0%
! GATAGAAATAACTGCAAATA+CGG - chr1.3:59485160-59485179 MS.gene45027:CDS 25.0%
! GTTACCTAAAATTAGGTTAA+GGG - chr1.3:59483032-59483051 MS.gene45027:intron 25.0%
! TACTAACTTTGATGTTTCAA+GGG - chr1.3:59480254-59480273 MS.gene45027:intron 25.0%
! TAGTTAATAAACAAGCTGAA+TGG - chr1.3:59484132-59484151 MS.gene45027:CDS 25.0%
! TATTCTAATGCTTATATGTC+AGG - chr1.3:59480794-59480813 MS.gene45027:intron 25.0%
! TCATTGGTATTACTATTAAG+TGG + chr1.3:59481393-59481412 None:intergenic 25.0%
! TGAAATAGTGTGTTATAGAA+TGG - chr1.3:59481044-59481063 MS.gene45027:intron 25.0%
! TGAGAATTTAAAAAAGTAGC+AGG + chr1.3:59481696-59481715 None:intergenic 25.0%
! TGTTACCTAAAATTAGGTTA+AGG - chr1.3:59483031-59483050 MS.gene45027:intron 25.0%
! TTAGAATCCCAATAAATGAT+TGG + chr1.3:59481987-59482006 None:intergenic 25.0%
! TTCTTTGTATCAAACAGTAT+TGG - chr1.3:59481503-59481522 MS.gene45027:CDS 25.0%
!! AACTTTCCTTTTTATATCCT+TGG + chr1.3:59484781-59484800 None:intergenic 25.0%
!! AATTTTTCACCCATTTTATC+TGG - chr1.3:59485076-59485095 MS.gene45027:CDS 25.0%
!! ATTTTCATCAATCCAAATCA+CGG + chr1.3:59482755-59482774 None:intergenic 25.0%
!! CAATTTAAGGCAAAGAAAAA+GGG + chr1.3:59483617-59483636 None:intergenic 25.0%
!! CGTTATCTGAAATTAAGTTA+AGG + chr1.3:59482800-59482819 None:intergenic 25.0%
!! TAACTTGTGAAAAAACTTTC+AGG - chr1.3:59480923-59480942 MS.gene45027:intron 25.0%
!! TCAAATCGTAGAAATTTTTC+GGG - chr1.3:59482889-59482908 MS.gene45027:intron 25.0%
!! TCATAACTTTTTGAACTGAA+TGG - chr1.3:59482455-59482474 MS.gene45027:intron 25.0%
!! TGATTTGGATTGATGAAAAT+AGG - chr1.3:59482755-59482774 MS.gene45027:intron 25.0%
!! TGGTCTTTTTATCATTTTGT+AGG + chr1.3:59484203-59484222 None:intergenic 25.0%
!! TTTATCTGGTTTGAATGTTT+AGG - chr1.3:59485090-59485109 MS.gene45027:CDS 25.0%
!!! AAAGGAGGATTTTATTTTTC+TGG + chr1.3:59481108-59481127 None:intergenic 25.0%
!!! TTGATTTTGACATTGTATTG+TGG + chr1.3:59484643-59484662 None:intergenic 25.0%
!!! TTTTATGATTGACTTTGTTC+AGG - chr1.3:59484056-59484075 MS.gene45027:CDS 25.0%
AAAGATCTCATGTGCATATT+TGG - chr1.3:59482083-59482102 MS.gene45027:intron 30.0%
AATAGGCAAAATTACTTCTG+TGG - chr1.3:59482772-59482791 MS.gene45027:intron 30.0%
AATTAAGCTGTTTACCGAAA+CGG - chr1.3:59480737-59480756 MS.gene45027:intron 30.0%
ACAATCACATGTATCAGTAT+CGG - chr1.3:59480425-59480444 MS.gene45027:intron 30.0%
ACTTATACCATCAGTGTTTA+TGG - chr1.3:59480703-59480722 MS.gene45027:intron 30.0%
AGAGCAGATGTTGAAATTTA+AGG + chr1.3:59484869-59484888 None:intergenic 30.0%
ATAAAGAACTGCATGTGAAA+GGG - chr1.3:59482503-59482522 MS.gene45027:intron 30.0%
ATAACACTTAACCTCAAGTT+TGG - chr1.3:59481666-59481685 MS.gene45027:intron 30.0%
ATGATACACAAGAATAGACA+AGG + chr1.3:59481774-59481793 None:intergenic 30.0%
CATTCAAATGCTGAATTAAC+GGG + chr1.3:59484484-59484503 None:intergenic 30.0%
CATTTATGTTTCCTCACTTA+AGG + chr1.3:59480519-59480538 None:intergenic 30.0%
CCTGAAACAAATCCAATTTA+AGG + chr1.3:59483630-59483649 None:intergenic 30.0%
CTATTATCAAGAATCAGGAA+GGG - chr1.3:59484670-59484689 MS.gene45027:intron 30.0%
CTTAAGTGAGGAAACATAAA+TGG - chr1.3:59480517-59480536 MS.gene45027:CDS 30.0%
CTTAATTTCAGATAACGATG+TGG - chr1.3:59482803-59482822 MS.gene45027:intron 30.0%
GAAAGCTATTATCAAGAATC+AGG - chr1.3:59484665-59484684 MS.gene45027:intron 30.0%
GAGCAGATGTTGAAATTTAA+GGG + chr1.3:59484868-59484887 None:intergenic 30.0%
GCATAATTTCTTTCATAGTG+TGG + chr1.3:59484086-59484105 None:intergenic 30.0%
GTTGTATGCATGATAAGAAA+CGG - chr1.3:59484755-59484774 MS.gene45027:intron 30.0%
GTTTATTAACTATCAGGCTA+CGG + chr1.3:59484124-59484143 None:intergenic 30.0%
TAAAGCAATTGTTACCTGAA+AGG + chr1.3:59481864-59481883 None:intergenic 30.0%
TATAAAGAACTGCATGTGAA+AGG - chr1.3:59482502-59482521 MS.gene45027:intron 30.0%
TCTCAGTTATGAAGAATTGA+AGG - chr1.3:59481151-59481170 MS.gene45027:intron 30.0%
TGAAATCCATATCCAAACAT+GGG - chr1.3:59482966-59482985 MS.gene45027:intron 30.0%
TGAAGTGATTGTTAAGACAA+AGG - chr1.3:59483723-59483742 MS.gene45027:intron 30.0%
TTAACAATCTCCATCCTAAA+CGG + chr1.3:59483347-59483366 None:intergenic 30.0%
TTATTACAAGAACCGTGATT+TGG - chr1.3:59482740-59482759 MS.gene45027:intron 30.0%
TTGAAATCCATATCCAAACA+TGG - chr1.3:59482965-59482984 MS.gene45027:intron 30.0%
TTGGGAAATGTTGTTATCTT+TGG - chr1.3:59481191-59481210 MS.gene45027:intron 30.0%
TTTATTAACTATCAGGCTAC+GGG + chr1.3:59484123-59484142 None:intergenic 30.0%
! ATCTTTTTCTTGCGTCATTT+TGG + chr1.3:59482999-59483018 None:intergenic 30.0%
! CAGCTTGTTTATTAACTATC+AGG + chr1.3:59484130-59484149 None:intergenic 30.0%
! CCAATTTAAGGCAAAGAAAA+AGG + chr1.3:59483618-59483637 None:intergenic 30.0%
! CCTTAAATTGGATTTGTTTC+AGG - chr1.3:59483627-59483646 MS.gene45027:CDS 30.0%
! CCTTTTTCTTTGCCTTAAAT+TGG - chr1.3:59483615-59483634 MS.gene45027:CDS 30.0%
! GACTTTTATCCCATTTTCAA+TGG + chr1.3:59485012-59485031 None:intergenic 30.0%
! GTTAAAGTACCAAGTAGTAA+AGG - chr1.3:59483116-59483135 MS.gene45027:intron 30.0%
! TATTTTCGTGGGAAAGTTAT+AGG + chr1.3:59481808-59481827 None:intergenic 30.0%
!! AGCTGGTCTTAAATATGATA+TGG + chr1.3:59482915-59482934 None:intergenic 30.0%
!! ATACTAATAGGCTATTTTCG+TGG + chr1.3:59481820-59481839 None:intergenic 30.0%
!! TACTAATAGGCTATTTTCGT+GGG + chr1.3:59481819-59481838 None:intergenic 30.0%
!!! CAACTTTAGCATTTTTTAGC+AGG + chr1.3:59481448-59481467 None:intergenic 30.0%
!!! GGGAATGGAGATTTTATTTT+TGG - chr1.3:59483154-59483173 MS.gene45027:intron 30.0%
!!! TGTCATTTTGAATTGAACTC+TGG - chr1.3:59482389-59482408 MS.gene45027:intron 30.0%
!!! TTTTTTACTTCCCGTCATAT+TGG - chr1.3:59482831-59482850 MS.gene45027:intron 30.0%
AAACAAGCTGAATGGTCTAT+TGG - chr1.3:59484140-59484159 MS.gene45027:CDS 35.0%
AAACGGCCAAGGATATAAAA+AGG - chr1.3:59484772-59484791 MS.gene45027:intron 35.0%
AGATACAACTACTGTAACTC+CGG + chr1.3:59481616-59481635 None:intergenic 35.0%
AGCTTTCTAGGTATAGCTTA+TGG - chr1.3:59480605-59480624 MS.gene45027:CDS 35.0%
ATCCTGAATGAGTGAAAGTA+AGG + chr1.3:59481640-59481659 None:intergenic 35.0%
ATCTCATGTGCATATTTGGT+TGG - chr1.3:59482087-59482106 MS.gene45027:intron 35.0%
ATTAAGCTGTTTACCGAAAC+GGG - chr1.3:59480738-59480757 MS.gene45027:intron 35.0%
ATTATGTCTTGTCTCTGTAC+TGG - chr1.3:59482628-59482647 MS.gene45027:intron 35.0%
CAAACACTACTTGAACACTT+TGG - chr1.3:59485127-59485146 MS.gene45027:CDS 35.0%
CAAGACATAATACAGACTTC+TGG + chr1.3:59482619-59482638 None:intergenic 35.0%
CACATTGATACCAGAAAATC+TGG + chr1.3:59480990-59481009 None:intergenic 35.0%
CCGGAAACCAATCATTTATT+GGG - chr1.3:59481977-59481996 MS.gene45027:intron 35.0%
CTCTACTAAAATCCTTCTTC+TGG + chr1.3:59484736-59484755 None:intergenic 35.0%
CTTTAACCCATGTTTGGATA+TGG + chr1.3:59482975-59482994 None:intergenic 35.0%
CTTTCAAGAACAATTGCATG+TGG + chr1.3:59483676-59483695 None:intergenic 35.0%
GATTTCAAGCTTCAAACCTA+TGG + chr1.3:59482953-59482972 None:intergenic 35.0%
GCAACAGTACTGTGAATTAA+AGG - chr1.3:59484832-59484851 MS.gene45027:intron 35.0%
GCATTTAAACACATTGCATG+TGG + chr1.3:59484527-59484546 None:intergenic 35.0%
GCGCTAGATGATATTGAATT+GGG - chr1.3:59481173-59481192 MS.gene45027:intron 35.0%
GCTACGGGATAATTTACAAA+GGG + chr1.3:59484108-59484127 None:intergenic 35.0%
GCTATTATCAAGAATCAGGA+AGG - chr1.3:59484669-59484688 MS.gene45027:intron 35.0%
GCTTATACCATAAACACTGA+TGG + chr1.3:59480713-59480732 None:intergenic 35.0%
GTGTTATAGAATGGTAGAAG+TGG - chr1.3:59481053-59481072 MS.gene45027:intron 35.0%
TAACAATCTCCATCCTAAAC+GGG + chr1.3:59483346-59483365 None:intergenic 35.0%
TAATTGTGCTTCCTTAAGTG+AGG - chr1.3:59480505-59480524 MS.gene45027:CDS 35.0%
TATAGTACCACTGAGTTTGT+AGG + chr1.3:59480288-59480307 None:intergenic 35.0%
TATGTCCACCATAAGTAGAA+AGG + chr1.3:59484301-59484320 None:intergenic 35.0%
TCACAGGAAAAGAAAACCAT+AGG - chr1.3:59482934-59482953 MS.gene45027:intron 35.0%
TCCTGAATGAGTGAAAGTAA+GGG + chr1.3:59481639-59481658 None:intergenic 35.0%
TCTTGAGACAGTTATCACAA+GGG + chr1.3:59485192-59485211 None:intergenic 35.0%
TGAGAGAAAGACCAATATGA+CGG + chr1.3:59482845-59482864 None:intergenic 35.0%
TGCACAGAGATTAAACTAAC+TGG - chr1.3:59480831-59480850 MS.gene45027:intron 35.0%
TGGATGTAAGCATATTTGGA+TGG - chr1.3:59480894-59480913 MS.gene45027:intron 35.0%
TTCTAATTACCTCACGAACT+GGG + chr1.3:59483537-59483556 None:intergenic 35.0%
! ACAGTACTGTTGCATCTTTT+TGG + chr1.3:59484825-59484844 None:intergenic 35.0%
! GAGTTGCTGTTCAAAAGAAA+TGG - chr1.3:59483911-59483930 MS.gene45027:intron 35.0%
! GTATGTGCAACTATTGCTTT+TGG - chr1.3:59483955-59483974 MS.gene45027:intron 35.0%
! GTTAGTTTAATCTCTGTGCA+TGG + chr1.3:59480831-59480850 None:intergenic 35.0%
! TCAAGTACAAGTTGACCATT+TGG - chr1.3:59485030-59485049 MS.gene45027:intron 35.0%
! TCTAAAATGCATGCATCAGA+AGG - chr1.3:59482002-59482021 MS.gene45027:intron 35.0%
! TGAATGTTTAGGATGAATGC+CGG - chr1.3:59485101-59485120 MS.gene45027:CDS 35.0%
! TGGTCCCTTAACCTAATTTT+AGG + chr1.3:59483039-59483058 None:intergenic 35.0%
! TTTGGTCTTTAACCCATGTT+TGG + chr1.3:59482981-59483000 None:intergenic 35.0%
!! AACTTGTTCCGTTGTTTCTT+AGG + chr1.3:59480201-59480220 None:intergenic 35.0%
!! CCCAATAAATGATTGGTTTC+CGG + chr1.3:59481980-59481999 None:intergenic 35.0%
!! TGCAACTATTGCTTTTGGAA+TGG - chr1.3:59483960-59483979 MS.gene45027:intron 35.0%
!!! AGTTTTATTCTTATGCCCAC+TGG - chr1.3:59481275-59481294 MS.gene45027:intron 35.0%
!!! CAACTATTGCTTTTGGAATG+GGG - chr1.3:59483962-59483981 MS.gene45027:intron 35.0%
!!! CGACACATTCACTTTTTGAA+AGG + chr1.3:59483816-59483835 None:intergenic 35.0%
!!! GCAACTATTGCTTTTGGAAT+GGG - chr1.3:59483961-59483980 MS.gene45027:intron 35.0%
!!! GGAAAGTTTTAAGACAGCAA+TGG - chr1.3:59484793-59484812 MS.gene45027:intron 35.0%
!!! TGATTTTGAGTTCTGACATG+TGG - chr1.3:59482560-59482579 MS.gene45027:intron 35.0%
AAATCCTCCTTTGCTGCAAA+AGG - chr1.3:59481116-59481135 MS.gene45027:intron 40.0%
AAATTAGGTTAAGGGACCAC+AGG - chr1.3:59483040-59483059 MS.gene45027:intron 40.0%
AATCTACCAAGCACTAACAC+TGG - chr1.3:59480368-59480387 MS.gene45027:intron 40.0%
ACATACAAAAGCTTGCACGA+AGG + chr1.3:59481940-59481959 None:intergenic 40.0%
ACGATTCGCCTAAGAAACAA+CGG - chr1.3:59480190-59480209 MS.gene45027:CDS 40.0%
ACTAGGATTTGAACCCGTTT+AGG - chr1.3:59483330-59483349 MS.gene45027:CDS 40.0%
AGCTAGAAAAATGCTACACG+AGG + chr1.3:59484228-59484247 None:intergenic 40.0%
AGGAAGATCAACAAGATCTC+TGG + chr1.3:59484378-59484397 None:intergenic 40.0%
ATGATTTCCGGCCTGATTAT+CGG - chr1.3:59483443-59483462 MS.gene45027:intron 40.0%
CATTGCTCTATACCAGAAGA+AGG - chr1.3:59484721-59484740 MS.gene45027:intron 40.0%
GAAACAACGGAACAAGTTTG+TGG - chr1.3:59480203-59480222 MS.gene45027:intron 40.0%
GAGAGAAAGACCAATATGAC+GGG + chr1.3:59482844-59482863 None:intergenic 40.0%
GATACAACTACTGTAACTCC+GGG + chr1.3:59481615-59481634 None:intergenic 40.0%
GCCGGAAACCAATCATTTAT+TGG - chr1.3:59481976-59481995 MS.gene45027:intron 40.0%
GCTAGAAAAATGCTACACGA+GGG + chr1.3:59484227-59484246 None:intergenic 40.0%
GGAAGATCAACAAGATCTCT+GGG + chr1.3:59484377-59484396 None:intergenic 40.0%
GGCGCTAGATGATATTGAAT+TGG - chr1.3:59481172-59481191 MS.gene45027:intron 40.0%
GGCTACGGGATAATTTACAA+AGG + chr1.3:59484109-59484128 None:intergenic 40.0%
GGTTCGAATGTGAAACAGTA+AGG - chr1.3:59482527-59482546 MS.gene45027:intron 40.0%
GTCACAAGTGCTTATGTCAA+TGG + chr1.3:59480580-59480599 None:intergenic 40.0%
GTCATGAGACAACATATCAG+AGG + chr1.3:59482306-59482325 None:intergenic 40.0%
GTCTTGAGACAGTTATCACA+AGG + chr1.3:59485193-59485212 None:intergenic 40.0%
GTTCAAAAGAAATGGCACGA+TGG - chr1.3:59483919-59483938 MS.gene45027:intron 40.0%
GTTCAAGTAGTGTTTGTCTC+CGG + chr1.3:59485123-59485142 None:intergenic 40.0%
GTTCTAATTACCTCACGAAC+TGG + chr1.3:59483538-59483557 None:intergenic 40.0%
TAGCAGGTATTCCAAACTTG+AGG + chr1.3:59481680-59481699 None:intergenic 40.0%
TATAGAGCAATGCAAACTGC+TGG + chr1.3:59484713-59484732 None:intergenic 40.0%
TCAACATCCTACAAACTCAG+TGG - chr1.3:59480278-59480297 MS.gene45027:intron 40.0%
TCAAGCATGTAAAGCAGCTT+TGG - chr1.3:59481241-59481260 MS.gene45027:intron 40.0%
TCCCTTACTTTCACTCATTC+AGG - chr1.3:59481635-59481654 MS.gene45027:CDS 40.0%
TCTCCAAGCCTTTCTACTTA+TGG - chr1.3:59484290-59484309 MS.gene45027:intron 40.0%
TGAGGTATGCCTTTACTACT+TGG + chr1.3:59483128-59483147 None:intergenic 40.0%
TTATGGCTAAACTACTCCTG+TGG + chr1.3:59483059-59483078 None:intergenic 40.0%
TTTATTCTTATGCCCACTGG+TGG - chr1.3:59481278-59481297 MS.gene45027:intron 40.0%
! ACAACATATCAGAGGCACAT+GGG + chr1.3:59482298-59482317 None:intergenic 40.0%
! ATTTCTGCCTTTTGCAGCAA+AGG + chr1.3:59481126-59481145 None:intergenic 40.0%
! CATATTTAAGACCAGCTCAC+AGG - chr1.3:59482918-59482937 MS.gene45027:intron 40.0%
! CATTTTGTAGGTCATCAGAC+TGG + chr1.3:59484191-59484210 None:intergenic 40.0%
! TAAACGGGTTCAAATCCTAG+TGG + chr1.3:59483331-59483350 None:intergenic 40.0%
! TAAAGGCATACCTCAACAGT+CGG - chr1.3:59483133-59483152 MS.gene45027:intron 40.0%
! TCTTTTGAACAGCAACTCTC+TGG + chr1.3:59483909-59483928 None:intergenic 40.0%
! TGGCAAATCTCTTTGCTATC+AGG - chr1.3:59481301-59481320 MS.gene45027:intron 40.0%
! TGGTTGAGCAAGATTTTCGT+TGG - chr1.3:59483277-59483296 MS.gene45027:intron 40.0%
! TGTCAGGCTCTAATTACGTT+GGG + chr1.3:59483182-59483201 None:intergenic 40.0%
! TTGTGACTTGTGAGCTTTCT+AGG - chr1.3:59480593-59480612 MS.gene45027:CDS 40.0%
! TTTTCATCCATAGCCCGTTT+CGG + chr1.3:59480754-59480773 None:intergenic 40.0%
!! AAACCACGTTTTTCAGCCAA+TGG - chr1.3:59483416-59483435 MS.gene45027:intron 40.0%
!! AACCACGTTTTTCAGCCAAT+GGG - chr1.3:59483417-59483436 MS.gene45027:intron 40.0%
!! TGTGGTCTCTTTGAAGTAGT+CGG - chr1.3:59482578-59482597 MS.gene45027:intron 40.0%
!! TTTGCATTGGCCAGATTTTC+TGG - chr1.3:59480977-59480996 MS.gene45027:intron 40.0%
!!! TGCAGGTTTTGTTGTTGATG+AGG - chr1.3:59482138-59482157 MS.gene45027:intron 40.0%
AAAGAAATGGCACGATGGAG+AGG - chr1.3:59483924-59483943 MS.gene45027:intron 45.0%
AAGAACTGCATGTGAAAGGG+TGG - chr1.3:59482506-59482525 MS.gene45027:intron 45.0%
AAGGAACCACTAAAGCAGCT+TGG - chr1.3:59483742-59483761 MS.gene45027:intron 45.0%
AAGGCAGCATATTACCATGC+TGG - chr1.3:59483871-59483890 MS.gene45027:intron 45.0%
ACGGAACAAGTTTGTGGAGT+TGG - chr1.3:59480209-59480228 MS.gene45027:intron 45.0%
AGTTGTCCCTGAGAGTTAAG+AGG + chr1.3:59482118-59482137 None:intergenic 45.0%
ATTAGAGCCTGACACTCTAG+TGG - chr1.3:59483188-59483207 MS.gene45027:intron 45.0%
CCAAGCCTTTCTACTTATGG+TGG - chr1.3:59484293-59484312 MS.gene45027:intron 45.0%
CCACCATAAGTAGAAAGGCT+TGG + chr1.3:59484296-59484315 None:intergenic 45.0%
CGGAACAAGTTTGTGGAGTT+GGG - chr1.3:59480210-59480229 MS.gene45027:intron 45.0%
GAAAAATGCTACACGAGGGT+TGG + chr1.3:59484223-59484242 None:intergenic 45.0%
GATCCTAATCCCCGATAATC+AGG + chr1.3:59483457-59483476 None:intergenic 45.0%
GATCGTTTCAAGAGTCAGTG+TGG - chr1.3:59483778-59483797 MS.gene45027:intron 45.0%
GCAGCTTGGACAACTACTAA+TGG - chr1.3:59483756-59483775 MS.gene45027:intron 45.0%
GGATTTGAACCCGTTTAGGA+TGG - chr1.3:59483334-59483353 MS.gene45027:CDS 45.0%
GTTGTCCCTGAGAGTTAAGA+GGG + chr1.3:59482117-59482136 None:intergenic 45.0%
TACGTACCAGTGTTAGTGCT+TGG + chr1.3:59480377-59480396 None:intergenic 45.0%
TAGGTCATCAGACTGGTAGT+CGG + chr1.3:59484184-59484203 None:intergenic 45.0%
TATCAAGAATCAGGAAGGGC+TGG - chr1.3:59484674-59484693 MS.gene45027:intron 45.0%
TGATTTCCGGCCTGATTATC+GGG - chr1.3:59483444-59483463 MS.gene45027:intron 45.0%
TGCATGATAAGAAACGGCCA+AGG - chr1.3:59484761-59484780 MS.gene45027:intron 45.0%
TGGGAAGAGCTACTTCAAGA+AGG + chr1.3:59482279-59482298 None:intergenic 45.0%
TTACATGCTTGATGCTGCAG+TGG + chr1.3:59481233-59481252 None:intergenic 45.0%
TTAGAGCCTGACACTCTAGT+GGG - chr1.3:59483189-59483208 MS.gene45027:intron 45.0%
TTGATGAGGCACACTGTGTT+AGG - chr1.3:59482152-59482171 MS.gene45027:intron 45.0%
TTTGAACAGCAACTCTCTGG+CGG + chr1.3:59483906-59483925 None:intergenic 45.0%
! AAAGGCATACCTCAACAGTC+GGG - chr1.3:59483134-59483153 MS.gene45027:intron 45.0%
! AGCATATTACCATGCTGGCT+TGG - chr1.3:59483876-59483895 MS.gene45027:intron 45.0%
! AGTTGTCCAAGCTGCTTTAG+TGG + chr1.3:59483751-59483770 None:intergenic 45.0%
! CTTCTGATCGAAGGTGTATC+AGG + chr1.3:59480454-59480473 None:intergenic 45.0%
! GACAACATATCAGAGGCACA+TGG + chr1.3:59482299-59482318 None:intergenic 45.0%
! GGTTTTCTTTTCCTGTGAGC+TGG + chr1.3:59482932-59482951 None:intergenic 45.0%
! GTGTCAGGCTCTAATTACGT+TGG + chr1.3:59483183-59483202 None:intergenic 45.0%
! TACTGTAACTCCGGGTTGAA+GGG + chr1.3:59481607-59481626 None:intergenic 45.0%
! TCTTGTCTCTGTACTGGTAC+TGG - chr1.3:59482634-59482653 MS.gene45027:intron 45.0%
!! ACCACGTTTTTCAGCCAATG+GGG - chr1.3:59483418-59483437 MS.gene45027:intron 45.0%
!! AGCGTTGGTGCTAGAAAGAT+AGG - chr1.3:59480472-59480491 MS.gene45027:intron 45.0%
AACTCTCAGGGACAACTTGC+AGG - chr1.3:59482121-59482140 MS.gene45027:intron 50.0%
AAGAGATTTGCCACCACCAG+TGG + chr1.3:59481294-59481313 None:intergenic 50.0%
AAGCTGTTGGGACACCATTG+TGG + chr1.3:59483216-59483235 None:intergenic 50.0%
AATGCCATGACAGGAACACG+TGG + chr1.3:59483496-59483515 None:intergenic 50.0%
AGAGATTTGCCACCACCAGT+GGG + chr1.3:59481293-59481312 None:intergenic 50.0%
ATCTCCATTCCCGACTGTTG+AGG + chr1.3:59483146-59483165 None:intergenic 50.0%
ATTCTTATGCCCACTGGTGG+TGG - chr1.3:59481281-59481300 MS.gene45027:intron 50.0%
CAATGGTGTCCCAACAGCTT+CGG - chr1.3:59483216-59483235 MS.gene45027:intron 50.0%
CAGCTGTTCTCCAAGAGCTA+AGG - chr1.3:59481736-59481755 MS.gene45027:intron 50.0%
CATACCTCAACAGTCGGGAA+TGG - chr1.3:59483139-59483158 MS.gene45027:intron 50.0%
CTAATCCCCGATAATCAGGC+CGG + chr1.3:59483453-59483472 None:intergenic 50.0%
CTTTCCACGTGTTCCTGTCA+TGG - chr1.3:59483489-59483508 MS.gene45027:intron 50.0%
GATTTCCGGCCTGATTATCG+GGG - chr1.3:59483445-59483464 MS.gene45027:intron 50.0%
GCCAATGGGGACATGATTTC+CGG - chr1.3:59483431-59483450 MS.gene45027:intron 50.0%
GGTAGAAGTGGCATCACTCA+GGG - chr1.3:59481065-59481084 MS.gene45027:intron 50.0%
GTGACACCTGAGAGAATTGC+CGG - chr1.3:59481958-59481977 MS.gene45027:intron 50.0%
GTGCTCCCTCTTAACTCTCA+GGG - chr1.3:59482109-59482128 MS.gene45027:intron 50.0%
TAGCTCTTGGAGAACAGCTG+CGG + chr1.3:59481736-59481755 None:intergenic 50.0%
TGGTAGAAGTGGCATCACTC+AGG - chr1.3:59481064-59481083 MS.gene45027:intron 50.0%
TGGTTTCCGGCAATTCTCTC+AGG + chr1.3:59481967-59481986 None:intergenic 50.0%
TTGAACAGCAACTCTCTGGC+GGG + chr1.3:59483905-59483924 None:intergenic 50.0%
! ACACCTTCGATCAGAAGCGT+TGG - chr1.3:59480457-59480476 MS.gene45027:intron 50.0%
! ACACTCTAGTGGGTCCACAA+TGG - chr1.3:59483199-59483218 MS.gene45027:intron 50.0%
! CTACTGTAACTCCGGGTTGA+AGG + chr1.3:59481608-59481627 None:intergenic 50.0%
! GTGAATCTCGCCTTAGCTCT+TGG + chr1.3:59481749-59481768 None:intergenic 50.0%
! GTTGGGTTCTAGTGACGATG+AGG - chr1.3:59480227-59480246 MS.gene45027:intron 50.0%
! TCCCCATTGGCTGAAAAACG+TGG + chr1.3:59483422-59483441 None:intergenic 50.0%
! TCTGCCTTTTGCAGCAAAGG+AGG + chr1.3:59481123-59481142 None:intergenic 50.0%
!! CTGTTTACCGAAACGGGCTA+TGG - chr1.3:59480744-59480763 MS.gene45027:intron 50.0%
AACTGGGTGAGTTGCAGTGG+CGG + chr1.3:59483521-59483540 None:intergenic 55.0%
AAGTGGCATCACTCAGGGCT+CGG - chr1.3:59481070-59481089 MS.gene45027:intron 55.0%
AATCACGTGCTTGACACGCG+CGG - chr1.3:59480135-59480154 MS.gene45027:CDS 55.0%
ACGAACTGGGTGAGTTGCAG+TGG + chr1.3:59483524-59483543 None:intergenic 55.0%
CGGCCTGATTATCGGGGATT+AGG - chr1.3:59483451-59483470 MS.gene45027:intron 55.0%
CTTCCAGCAACCCTTCAACC+CGG - chr1.3:59481594-59481613 MS.gene45027:CDS 55.0%
GCACCAACGCTTCTGATCGA+AGG + chr1.3:59480463-59480482 None:intergenic 55.0%
GCCGGAAATCATGTCCCCAT+TGG + chr1.3:59483435-59483454 None:intergenic 55.0%
GGTGCTCCCTCTTAACTCTC+AGG - chr1.3:59482108-59482127 MS.gene45027:intron 55.0%
TCCAGAGGACCGAAGCTGTT+GGG + chr1.3:59483228-59483247 None:intergenic 55.0%
TCGATGTGGGTGACTCCACT+AGG - chr1.3:59483313-59483332 MS.gene45027:CDS 55.0%
TCGTCAGCCTCTCTCGATGT+GGG - chr1.3:59483300-59483319 MS.gene45027:intron 55.0%
TGCAACTCACCCAGTTCGTG+AGG - chr1.3:59483525-59483544 MS.gene45027:intron 55.0%
TGTGGGACTGATCCCTGGTT+CGG - chr1.3:59483253-59483272 MS.gene45027:intron 55.0%
TTGCTCAACCAGCCGAACCA+GGG + chr1.3:59483268-59483287 None:intergenic 55.0%
TTGGAGAACAGCTGCGGCTT+GGG + chr1.3:59481730-59481749 None:intergenic 55.0%
! GGGTTCTAGTGACGATGAGG+AGG - chr1.3:59480230-59480249 MS.gene45027:intron 55.0%
! TGTGGACCCACTAGAGTGTC+AGG + chr1.3:59483198-59483217 None:intergenic 55.0%
ACCAGGGATCAGTCCCACAG+TGG + chr1.3:59483252-59483271 None:intergenic 60.0%
CTCCAGAGGACCGAAGCTGT+TGG + chr1.3:59483229-59483248 None:intergenic 60.0%
CTTGCTCAACCAGCCGAACC+AGG + chr1.3:59483269-59483288 None:intergenic 60.0%
CTTGGAGAACAGCTGCGGCT+TGG + chr1.3:59481731-59481750 None:intergenic 60.0%
GGAGTCACCCACATCGAGAG+AGG + chr1.3:59483310-59483329 None:intergenic 60.0%
GTCGTCAGCCTCTCTCGATG+TGG - chr1.3:59483299-59483318 MS.gene45027:intron 60.0%
GTGGCGGTCAATGCCATGAC+AGG + chr1.3:59483505-59483524 None:intergenic 60.0%
TCCCAACAGCTTCGGTCCTC+TGG - chr1.3:59483224-59483243 MS.gene45027:intron 60.0%
! ACTCCGGGTTGAAGGGTTGC+TGG + chr1.3:59481600-59481619 None:intergenic 60.0%
CAGTCCCACAGTGGCTCCAG+AGG + chr1.3:59483243-59483262 None:intergenic 65.0%
GCCACTGTGGGACTGATCCC+TGG - chr1.3:59483248-59483267 MS.gene45027:intron 65.0%
GTGCTTGACACGCGCGGTGA+TGG - chr1.3:59480141-59480160 MS.gene45027:CDS 65.0%
!! CGGTCCTCTGGAGCCACTGT+GGG - chr1.3:59483236-59483255 MS.gene45027:intron 65.0%
!! GGACTGATCCCTGGTTCGGC+TGG - chr1.3:59483257-59483276 MS.gene45027:intron 65.0%
!! TCGGTCCTCTGGAGCCACTG+TGG - chr1.3:59483235-59483254 MS.gene45027:intron 65.0%
GGCGGGCAGCCAAGCCAGCA+TGG + chr1.3:59483888-59483907 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 59480108 59485222 59480108 ID=MS.gene45027
chr1.3 mRNA 59480108 59485222 59480108 ID=MS.gene45027.t1;Parent=MS.gene45027
chr1.3 exon 59485031 59485222 59485031 ID=MS.gene45027.t1.exon1;Parent=MS.gene45027.t1
chr1.3 CDS 59485031 59485222 59485031 ID=cds.MS.gene45027.t1;Parent=MS.gene45027.t1
chr1.3 exon 59484008 59484268 59484008 ID=MS.gene45027.t1.exon2;Parent=MS.gene45027.t1
chr1.3 CDS 59484008 59484268 59484008 ID=cds.MS.gene45027.t1;Parent=MS.gene45027.t1
chr1.3 exon 59483573 59483736 59483573 ID=MS.gene45027.t1.exon3;Parent=MS.gene45027.t1
chr1.3 CDS 59483573 59483736 59483573 ID=cds.MS.gene45027.t1;Parent=MS.gene45027.t1
chr1.3 exon 59483307 59483403 59483307 ID=MS.gene45027.t1.exon4;Parent=MS.gene45027.t1
chr1.3 CDS 59483307 59483403 59483307 ID=cds.MS.gene45027.t1;Parent=MS.gene45027.t1
chr1.3 exon 59483157 59483200 59483157 ID=MS.gene45027.t1.exon5;Parent=MS.gene45027.t1
chr1.3 CDS 59483157 59483200 59483157 ID=cds.MS.gene45027.t1;Parent=MS.gene45027.t1
chr1.3 exon 59481784 59481898 59481784 ID=MS.gene45027.t1.exon6;Parent=MS.gene45027.t1
chr1.3 CDS 59481784 59481898 59481784 ID=cds.MS.gene45027.t1;Parent=MS.gene45027.t1
chr1.3 exon 59481328 59481681 59481328 ID=MS.gene45027.t1.exon7;Parent=MS.gene45027.t1
chr1.3 CDS 59481328 59481681 59481328 ID=cds.MS.gene45027.t1;Parent=MS.gene45027.t1
chr1.3 exon 59480477 59480701 59480477 ID=MS.gene45027.t1.exon8;Parent=MS.gene45027.t1
chr1.3 CDS 59480477 59480701 59480477 ID=cds.MS.gene45027.t1;Parent=MS.gene45027.t1
chr1.3 exon 59480108 59480218 59480108 ID=MS.gene45027.t1.exon9;Parent=MS.gene45027.t1
chr1.3 CDS 59480108 59480218 59480108 ID=cds.MS.gene45027.t1;Parent=MS.gene45027.t1
Gene Sequence

>MS.gene45027

ATGGAATCGCAAGCTGTTGGAACTTTGAATCACGTGCTTGACACGCGCGGTGATGGTTCTAAATGCTTCATTGATATTATTGACGATTCGCCTAAGAAACAACGGAACAAGTTTGTGGAGTTGGGTTCTAGTGACGATGAGGAGGATACTAACTTTGATGTTTCAAGGGTTCAACATCCTACAAACTCAGTGGTACTATATCAATTTTGTTTTATCGTCATTATCAGTTTTATTCCCAGTTTCAAATATTTGTGAATAAGAATCTACCAAGCACTAACACTGGTACGTAGTAATTTAAGAAAATGACATAATTGAATACAATCACATGTATCAGTATCGGACGCCTGATACACCTTCGATCAGAAGCGTTGGTGCTAGAAAGATAGGAATAAAGTTATAATTGTGCTTCCTTAAGTGAGGAAACATAAATGGCTCATTTTGCTTGTTTAAATTACTTATTTGAGTTTATCCATTGACATAAGCACTTGTGACTTGTGAGCTTTCTAGGTATAGCTTATGGAAACAATTTATAGCTTATATGAAAACTGTTTGACATTATTTTACCTTTTGTTATAGAAATGGAATATACATAAACACTTATACCATCAGTGTTTATGGTATAAGCGCTTAATTAAGCTGTTTACCGAAACGGGCTATGGATGAAAAATTAGTATGGATCTGCATTGTATTCTAATGCTTATATGTCAGGTTCATTCAAAACCATGCACAGAGATTAAACTAACTGGAATCTATGAAATTCAAGATAAGATAGAGAAGAATATAAAATGGATGTAAGCATATTTGGATGGCAATAATAACTTGTGAAAAAACTTTCAGGACTATTCTCAACATATTTTTTGTTTAATCTATTTGCATTGGCCAGATTTTCTGGTATCAATGTGACATTGTGACTAAAATGACAAAGTAAGATTATACTGAAATAGTGTGTTATAGAATGGTAGAAGTGGCATCACTCAGGGCTCGGTTTCATCAACTTCCAGAAAAATAAAATCCTCCTTTGCTGCAAAAGGCAGAAATAGTACTCTCAGTTATGAAGAATTGAAGGCGCTAGATGATATTGAATTGGGAAATGTTGTTATCTTTGGTAATAAGACACTTCGACCACTGCAGCATCAAGCATGTAAAGCAGCTTTGGCAAAACAAGATAGTTTTATTCTTATGCCCACTGGTGGTGGCAAATCTCTTTGCTATCAGGTCATTGCTTTCTCTTAAACCCTGATTTTTCTTTTTGCATGTTTCTTTGTAAGACATATTCTTCTAACCACTTAATAGTAATACCAATGATGATTATATTGTTTTGAAGCAACTAGCATGCACCTGCTAAAAAATGCTAAAGTTGTATATTGTTTCAAACGATTGTCTAGTTCACAGCTTTTCTTTGTATCAAACAGTATTGGTGAAACATTAGTTATCTATAATCTTATAATATGCTTTTGAACCTGTTAATTTTATTTTGTGCTTGCAGCTTCCAGCAACCCTTCAACCCGGAGTTACAGTAGTTGTATCTCCCTTACTTTCACTCATTCAGGATCAGATAATAACACTTAACCTCAAGTTTGGAATACCTGCTACTTTTTTAAATTCTCAACAAAATGCTTCCCAAGCCGCAGCTGTTCTCCAAGAGCTAAGGCGAGATTCACTTCCTTGTCTATTCTTGTGTATCATGATCTGTCTGTCCTATAACTTTCCCACGAAAATAGCCTATTAGTATTAGTATCATTTAAAAAAAAAACCTTTCAGGTAACAATTGCTTTAGTGTTTAATATTTTCTCACTGTACTTTTCTTGCTTGTATACAGAAAAGACAAGCCTTCGTGCAAGCTTTTGTATGTGACACCTGAGAGAATTGCCGGAAACCAATCATTTATTGGGATTCTAAAATGCATGCATCAGAAGGTAAGTTTTTATTGATTTGAATACATTTCATGAAACTGCGTCACAGAGCACTAGATTATAAAGATCTCATGTGCATATTTGGTTGGTGCTCCCTCTTAACTCTCAGGGACAACTTGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGGTATGCATTGTGCTTTTCATATACAGTTGCAGTGATTATTTTTCTATCATCAATGAGTGCAATTGAATGAAATTCTGAGACATAACTTTGCTAGTAATGAAACCTTCTTGAAGTAGCTCTTCCCATGTGCCTCTGATATGTTGTCTCATGACTGATCAAACAATACAAACAAGCTCCAAAATTTTAATTACTAATGAAGTATCATGGTTCATAAATGTCATTTTGAATTGAACTCTGGATATAGTGATATCTTAAAATTAAAGGTATGGCCTTCCTAAATTTCATAACTTTTTGAACTGAATGGATATTAAATAAATAAAAAAAGAAATATAAAGAACTGCATGTGAAAGGGTGGTTCGAATGTGAAACAGTAAGGATTTGTTTCTTGATTTTGAGTTCTGACATGTGGTCTCTTTGAAGTAGTCGGTATGTCATACATAAGCCAGAAGTCTGTATTATGTCTTGTCTCTGTACTGGTACTGGCTGATACAGTTCTTGACTGCTTTGAGATATTAAATTGTGACCTGAATATAAAACATTTTCTTCTTTAGGAAGTTTCTCTGACTTTATTACAAGAACCGTGATTTGGATTGATGAAAATAGGCAAAATTACTTCTGTGGTCCCTTAACTTAATTTCAGATAACGATGTGGTGCTTTTTTTTACTTCCCGTCATATTGGTCTTTCTCTCATGTTTGCATATAGATTTACAAGCTTCAAATCGTAGAAATTTTTCGGGCCATATCATATTTAAGACCAGCTCACAGGAAAAGAAAACCATAGGTTTGAAGCTTGAAATCCATATCCAAACATGGGTTAAAGACCAAAATGACGCAAGAAAAAGATAAAAAACTAAATTGTTACCTAAAATTAGGTTAAGGGACCACAGGAGTAGTTTAGCCATAAAATATTATAGTGTTACTACAAAGGTCTACAAACATATGTTAAAGTACCAAGTAGTAAAGGCATACCTCAACAGTCGGGAATGGAGATTTTATTTTTGGAACCCAACGTAATTAGAGCCTGACACTCTAGTGGGTCCACAATGGTGTCCCAACAGCTTCGGTCCTCTGGAGCCACTGTGGGACTGATCCCTGGTTCGGCTGGTTGAGCAAGATTTTCGTTGGTCGTCAGCCTCTCTCGATGTGGGTGACTCCACTAGGATTTGAACCCGTTTAGGATGGAGATTGTTAAAGCTATGTGATTTTTATTGTCAAAAACAGATTCATGACTTTTAAATTAAAAACCACGTTTTTCAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTAGGATCTCTTAAGCAAAACTTTCCACGTGTTCCTGTCATGGCATTGACCGCCACTGCAACTCACCCAGTTCGTGAGGTAATTAGAACAGTAAATTGCTATTATATATGGACAGCTACGTTGTTAAGTATATATAACTTTCTGACCCTTTTTCTTTGCCTTAAATTGGATTTGTTTCAGGACATCTTAAATGCTCTAAGAATTCCACATGCAATTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAGTATGAAGTGATTGTTAAGACAAAGGAACCACTAAAGCAGCTTGGACAACTACTAATGGATCGTTTCAAGAGTCAGTGTGGCATTGTATACTGCCTTTCAAAAAGTGAATGTGTCGACGTATCGAAATTTTTGAATGAGAAATGTAAAATAAAGGCAGCATATTACCATGCTGGCTTGGCTGCCCGCCAGAGAGTTGCTGTTCAAAAGAAATGGCACGATGGAGAGGTTCATATTGTATGTGCAACTATTGCTTTTGGAATGGGGATAGACAAAGCTGATGTTGTAAGTTGAGATACTTTTCTACTTTACTATGATGACGTTGTTATCATTCACTATTTTATGATTGACTTTGTTCAGGAATGCCACACTATGAAAGAAATTATGCCCTTTGTAAATTATCCCGTAGCCTGATAGTTAATAAACAAGCTGAATGGTCTATTGGTGATTTGTTGCATAATCACCGACTACCAGTCTGATGACCTACAAAATGATAAAAAGACCAACCCTCGTGTAGCATTTTTCTAGCTCAGCATTTATAAAGAACATGTATACAAGGAATTAAGAAGTCATCTCCAAGCCTTTCTACTTATGGTGGACATAGCTAAATTTAAGATACAAATGATCCTTTGCAATTTTGCAGAATTTTTCAAGTTCCCAGAGATCTTGTTGATCTTCCTCAAGTATAAATGCAAAATCTATATAATATAAGCACAATGGTACAATTTGCATAATGAAATTAAATATATTAATATAGCATATGCCCGTTAATTCAGCATTTGAATGTTTTACTAAAGCAAATATAACCACATGCAATGTGTTTAAATGCTCTACAAATTTTTAGTGATGAATTTTACGGTTCTTTGTTGCTCAAAATTCAAATTATACTTTTTCTTGTTATGTGTTTTCAGCGATTTGTCATCCACAATACAATGTCAAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGACAATCTTCCAGCAGTTTGCATTGCTCTATACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAACGGCCAAGGATATAAAAAGGAAAGTTTTAAGACAGCAATGGTTCAAGCCAAAAAGATGCAACAGTACTGTGAATTAAAGGTAAGCAAGCTCCCTTAAATTTCAACATCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCACTCTCTCTCTCTCTCTCTCACTCTCTCTCTCTCTCACACACACACACATATATAGTCAGTTTATTACCATTGAAAATGGGATAAAAGTCAAGTACAAGTTGACCATTTGGATTCATATAATTATTCGTCTATCAATTTTTCACCCATTTTATCTGGTTTGAATGTTTAGGATGAATGCCGGAGACAAACACTACTTGAACACTTTGGAGAATCTTTCGATAGAAATAACTGCAAATACGGCTCTAGCCCTTGTGATAACTGTCTCAAGACTGCATCATGA
Protein sequence

>MS.gene45027.t1

MESQAVGTLNHVLDTRGDGSKCFIDIIDDSPKKQRNKFVELGSSDDEEDTNFDVSRVQHPTNSVNGRSGITQGSVSSTSRKIKSSFAAKGRNSTLSYEELKALDDIELGNVVIFGNKTLRPLQHQACKAALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQNASQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFIGILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPRVPVMALTATATHPVREDILNALRIPHAIVLERSFDRPNLKYEVIVKTKEPLKQLGQLLMDRFKSQCGIVYCLSKSECVDVSKFLNEKCKIKAAYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKADVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQGYKKESFKTAMVQAKKMQQYCELKDECRRQTLLEHFGESFDRNNCKYGSSPCDNCLKTAS