AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45029

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45029.t1 MTR_1g064680 94.901 353 14 2 1 352 1 350 0.0 594
MS.gene45029.t1 MTR_7g101150 67.123 365 88 6 1 347 1 351 1.65e-158 448
MS.gene45029.t1 MTR_7g101150 62.192 365 82 7 1 347 1 327 2.20e-137 394
MS.gene45029.t1 MTR_2g022210 50.579 259 120 4 93 344 124 381 4.50e-90 275
MS.gene45029.t1 MTR_4g117250 45.151 299 155 6 52 345 60 354 9.88e-86 263
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45029.t1 AT3G09770 71.765 255 61 5 96 344 120 369 3.94e-124 362
MS.gene45029.t1 AT3G53410 53.474 331 106 9 18 344 7 293 4.60e-110 323
MS.gene45029.t1 AT5G03200 55.696 316 111 8 41 342 33 333 5.19e-109 322
MS.gene45029.t1 AT3G09770 67.857 224 61 5 96 313 120 338 2.04e-98 295
MS.gene45029.t1 AT3G06140 48.031 254 121 4 99 349 112 357 2.16e-79 247
MS.gene45029.t1 AT5G19080 43.607 305 145 6 45 344 89 371 4.30e-79 247

Find 106 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGTTTGATGCTACTGTTTC+TGG 0.165501 1.2:+49882354 MS.gene45029:CDS
TGCTGGAAATTTATAGTAAC+TGG 0.271287 1.2:-49883845 None:intergenic
TGCTGACACCTCCAAGATAT+TGG 0.275619 1.2:-49882198 None:intergenic
CAGCTGGCTGTCTAAACTTC+TGG 0.307730 1.2:-49883877 None:intergenic
CACTATCTTCTTCACTCTTC+AGG 0.317637 1.2:-49885249 None:intergenic
TATATTATCATGGGTAATAT+AGG 0.334544 1.2:+49881940 None:intergenic
TAAAGGAGAATTCCGGTTAA+AGG 0.352674 1.2:+49884087 MS.gene45029:CDS
ACAACCAGTAGAAAGGCTTT+TGG 0.367841 1.2:+49885200 MS.gene45029:CDS
AACTGTTCCTATGCCTTTGC+CGG 0.369591 1.2:+49882140 MS.gene45029:CDS
ACTTCTGGCCAAGACCTTGC+TGG 0.379461 1.2:-49883862 None:intergenic
GCATCCGGTGGCGGCGGTGG+CGG 0.380871 1.2:-49882039 None:intergenic
TCAAATGAAACGCCAACATC+TGG 0.387967 1.2:+49884013 MS.gene45029:CDS
GGCGGTGGCGGAGGAGTTAC+CGG 0.391281 1.2:-49882027 None:intergenic
CACTCTTCAGGCTCAGGCTC+AGG 0.391727 1.2:-49885237 None:intergenic
ATAAATTTCCAGCAAGGTCT+TGG 0.391916 1.2:+49883854 MS.gene45029:CDS
TCAGCAACAGGCGCCGGCGC+CGG 0.395045 1.2:+49882215 MS.gene45029:CDS
AGAAGGATAAAGGAGAATTC+CGG 0.402168 1.2:+49884080 MS.gene45029:CDS
TATGAGCTGCAGGAGATATA+TGG 0.402714 1.2:+49884145 MS.gene45029:CDS
TCCGGTGGCGGCGGTGGCGG+AGG 0.403742 1.2:-49882036 None:intergenic
GCAGCATCCGGTGGCGGCGG+TGG 0.412591 1.2:-49882042 None:intergenic
ATCTTGGAGGTGTCAGCAAC+AGG 0.416141 1.2:+49882203 MS.gene45029:CDS
GGCGGCGGAGGATAGTAATT+AGG 0.416420 1.2:-49882114 None:intergenic
GAACCTGATGAGGAAAATCC+TGG 0.417660 1.2:+49882312 MS.gene45029:CDS
GCAGTGTTTGAGAAGGATAA+AGG 0.421719 1.2:+49884070 MS.gene45029:CDS
TCTGCTTAGCTACCTTTAAC+CGG 0.430591 1.2:-49884099 None:intergenic
CTTCTTCACTCTTCAGGCTC+AGG 0.431420 1.2:-49885243 None:intergenic
GCTGACACCTCCAAGATATT+GGG 0.436037 1.2:-49882197 None:intergenic
TCCTCCGCCACCGCCGCCAC+CGG 0.438435 1.2:+49882035 MS.gene45029:CDS
TCTACTGGTTGTCTGCAGAT+TGG 0.441982 1.2:-49885189 None:intergenic
GCCGGCGCCGGCGCCGTATG+TGG 0.447246 1.2:+49882227 MS.gene45029:CDS
GGAAAATACCATGTGGCGAC+AGG 0.449920 1.2:-49884263 None:intergenic
TCCACATACGGCGCCGGCGC+CGG 0.450762 1.2:-49882228 None:intergenic
TTTAGACAGCCAGCTGGAAC+TGG 0.454606 1.2:+49883884 MS.gene45029:CDS
AGACACGGTGGCGGTGGAAG+TGG 0.456233 1.2:+49881988 MS.gene45029:CDS
ATCTCCAAAAGCCTTTCTAC+TGG 0.456468 1.2:-49885204 None:intergenic
CGTCGGAGACACGGTGGCGG+TGG 0.459369 1.2:+49881982 MS.gene45029:CDS
GCATCTGCTTTAACTGCTAC+AGG 0.460079 1.2:-49883968 None:intergenic
CTGCAGGAGATATATGGTAT+TGG 0.477865 1.2:+49884151 MS.gene45029:CDS
TAATTACTATCCTCCGCCGC+CGG 0.484178 1.2:+49882116 MS.gene45029:CDS
AGGCGATTGACCCAATATCT+TGG 0.484883 1.2:+49882187 MS.gene45029:CDS
AAGCAGATATTGTGGGTGAA+TGG 0.486141 1.2:+49884115 MS.gene45029:CDS
AAAGGCATAGGAACAGTTCC+CGG 0.486589 1.2:-49882135 None:intergenic
CCGCCGCCACCGGATGCTGC+TGG 0.494202 1.2:+49882045 MS.gene45029:CDS
TGATACGGAGGAGCAGCAGC+AGG 0.496030 1.2:-49882084 None:intergenic
CCAGCAGCATCCGGTGGCGG+CGG 0.497527 1.2:-49882045 None:intergenic
TTACCAGCAGCATCCGGTGG+CGG 0.526284 1.2:-49882048 None:intergenic
GGTAGCTAAGCAGATATTGT+GGG 0.526889 1.2:+49884108 MS.gene45029:CDS
TGGAATGAGGTATGAGCTGC+AGG 0.532509 1.2:+49884135 MS.gene45029:CDS
CAGCAGCAGGGTAAACGAAT+CGG 0.533425 1.2:-49882071 None:intergenic
GTATGATCACCATCATCGTC+AGG 0.534340 1.2:+49882167 MS.gene45029:CDS
GGAATCTGAGTTATTGAAAG+TGG 0.534885 1.2:+49883928 MS.gene45029:CDS
ATAGGAACAGTTCCCGGCGG+CGG 0.535468 1.2:-49882129 None:intergenic
TCTGCAGACAACCAGTAGAA+AGG 0.542846 1.2:+49885193 MS.gene45029:CDS
TGATCATACGGCGCCGGCAA+AGG 0.551424 1.2:-49882153 None:intergenic
AGGTAGCTAAGCAGATATTG+TGG 0.552818 1.2:+49884107 MS.gene45029:CDS
AATCGGTTACCAGCAGCATC+CGG 0.554933 1.2:-49882054 None:intergenic
GGAACAGTTCCCGGCGGCGG+AGG 0.555005 1.2:-49882126 None:intergenic
CAGTTGAGAGTGACTTGGAT+GGG 0.558719 1.2:+49884179 MS.gene45029:CDS
AATTACTATCCTCCGCCGCC+GGG 0.559380 1.2:+49882117 MS.gene45029:CDS
GCCTTCTGATGCTCCACATA+CGG 0.562305 1.2:-49882240 None:intergenic
TACGGCGCCGGCAAAGGCAT+AGG 0.564235 1.2:-49882147 None:intergenic
TGATGCTCCACATACGGCGC+CGG 0.566075 1.2:-49882234 None:intergenic
TAATTAGGATAATTCTGATA+CGG 0.568187 1.2:-49882099 None:intergenic
GTTATTGAAAGTGGCCGACA+TGG 0.568973 1.2:+49883937 MS.gene45029:CDS
GCATCTTCAAGCGACGTGGA+CGG 0.576209 1.2:+49883989 MS.gene45029:CDS
TTCTTTGCAAAAGAAGGCGA+CGG 0.577706 1.2:+49883785 MS.gene45029:CDS
AACTTCAGTTGAGAGTGACT+TGG 0.579503 1.2:+49884174 MS.gene45029:CDS
TCTAACAATCGTCGGAGACA+CGG 0.580257 1.2:+49881973 MS.gene45029:CDS
GAGGTGTCAGCAACAGGCGC+CGG 0.580449 1.2:+49882209 MS.gene45029:CDS
GCCGTATGTGGAGCATCAGA+AGG 0.583810 1.2:+49882239 MS.gene45029:CDS
CGATTGACCCAATATCTTGG+AGG 0.584212 1.2:+49882190 MS.gene45029:CDS
TGTCCTTCCCTGTCGCCACA+TGG 0.586258 1.2:+49884255 MS.gene45029:CDS
GGTCAATCGCCTGACGATGA+TGG 0.590554 1.2:-49882176 None:intergenic
TCAGTTGAGAGTGACTTGGA+TGG 0.593199 1.2:+49884178 MS.gene45029:CDS
GAATGATGTAAATATCAAGA+AGG 0.594223 1.2:+49882275 MS.gene45029:CDS
TGATGGTGATCATACGGCGC+CGG 0.599260 1.2:-49882159 None:intergenic
AACCTGATGAGGAAAATCCT+GGG 0.603264 1.2:+49882313 MS.gene45029:CDS
GTTACTATAAATTTCCAGCA+AGG 0.603855 1.2:+49883848 MS.gene45029:CDS
TGACGATGATGGTGATCATA+CGG 0.604221 1.2:-49882165 None:intergenic
GACTTGGATGGGAATGACCC+TGG 0.605458 1.2:+49884190 MS.gene45029:CDS
AAATTGATACCAGTTCCAGC+TGG 0.607603 1.2:-49883893 None:intergenic
AACTCAAGCAGTGTTTGAGA+AGG 0.610246 1.2:+49884063 MS.gene45029:CDS
TTAGGATAATTCTGATACGG+AGG 0.616665 1.2:-49882096 None:intergenic
TTGATGCTACTGTTTCTGGA+AGG 0.616868 1.2:+49882358 MS.gene45029:CDS
CAGAAGTTTAGACAGCCAGC+TGG 0.627481 1.2:+49883878 MS.gene45029:CDS
TGGCCGACGAGTTCATCCTC+CGG 0.629583 1.2:+49882008 MS.gene45029:CDS
GAAAATACCATGTGGCGACA+GGG 0.631207 1.2:-49884262 None:intergenic
CATGTGTAGCGGATGTGCGA+AGG 0.635931 1.2:+49885140 MS.gene45029:CDS
ATACCATGTGGCGACAGGGA+AGG 0.638468 1.2:-49884258 None:intergenic
CGGTTACCAGCAGCATCCGG+TGG 0.647735 1.2:-49882051 None:intergenic
TTGTTGCAGTGCATGTGTAG+CGG 0.649496 1.2:+49885129 MS.gene45029:intron
CTGCGTCCTTACGTCAACAA+AGG 0.660443 1.2:+49883808 MS.gene45029:CDS
ATGGGTAATATAGGAAGTAG+CGG 0.661139 1.2:+49881949 MS.gene45029:CDS
GTAGCGGTTCTAACAATCGT+CGG 0.661392 1.2:+49881965 MS.gene45029:CDS
ACTGATGATTGAACCTGATG+AGG 0.661841 1.2:+49882302 MS.gene45029:CDS
TATTGTGGGTGAATGGAATG+AGG 0.662749 1.2:+49884122 MS.gene45029:CDS
AATCGTCGGAGACACGGTGG+CGG 0.675225 1.2:+49881979 MS.gene45029:CDS
GATACGGAGGAGCAGCAGCA+GGG 0.676843 1.2:-49882083 None:intergenic
GGAAGGACAGTTGTGTCGCG+AGG 0.677114 1.2:-49884241 None:intergenic
TACAGGATAGATGTCCATGT+CGG 0.677204 1.2:-49883951 None:intergenic
AGATGCATCTTCAAGCGACG+TGG 0.677563 1.2:+49883985 MS.gene45029:CDS
TTACCGGAGGATGAACTCGT+CGG 0.696899 1.2:-49882011 None:intergenic
GGTGGCGGAGGAGTTACCGG+AGG 0.719189 1.2:-49882024 None:intergenic
AACAATCGTCGGAGACACGG+TGG 0.726822 1.2:+49881976 MS.gene45029:CDS
GTATGTGGAGCATCAGAAGG+CGG 0.727888 1.2:+49882242 MS.gene45029:CDS
GGCATAGGAACAGTTCCCGG+CGG 0.758019 1.2:-49882132 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAAATAAAATAAAA+AGG - chr1.2:49883189-49883208 None:intergenic 0.0%
!! AAAGAAAAATTAAATTACAA+AGG - chr1.2:49884294-49884313 None:intergenic 10.0%
!! AAGAAAAATTAAATTACAAA+GGG - chr1.2:49884293-49884312 None:intergenic 10.0%
!!! TTAAATTCTTTTACTTTTTA+GGG + chr1.2:49883336-49883355 MS.gene45029:intron 10.0%
!!! TTTAAATTCTTTTACTTTTT+AGG + chr1.2:49883335-49883354 MS.gene45029:intron 10.0%
!! TTGATAAACAACTTAATTAA+AGG - chr1.2:49884889-49884908 None:intergenic 15.0%
!!! ATTACTTAATTTATTTTGCA+TGG + chr1.2:49883368-49883387 MS.gene45029:intron 15.0%
!!! ATTTTTCTTTTATAGATTGT+TGG + chr1.2:49884304-49884323 MS.gene45029:intron 15.0%
!!! TAAATTCTTTTACTTTTTAG+GGG + chr1.2:49883337-49883356 MS.gene45029:intron 15.0%
!!! TCTGTTTGTTAAATATATTT+TGG + chr1.2:49883215-49883234 MS.gene45029:intron 15.0%
!!! TTAAGCTAAATTTGATTTTT+TGG + chr1.2:49882790-49882809 MS.gene45029:intron 15.0%
!!! TTTATTTCATATTTTGTTGT+AGG - chr1.2:49884616-49884635 None:intergenic 15.0%
!! AATTAAATTACAAAGGGAAA+CGG - chr1.2:49884287-49884306 None:intergenic 20.0%
!! TAATTAGGATAATTCTGATA+CGG - chr1.2:49882102-49882121 None:intergenic 20.0%
!! TATATGATAGAACATTATAG+CGG + chr1.2:49882573-49882592 MS.gene45029:intron 20.0%
!! TTGGATTCAAATAAGTAAAT+GGG + chr1.2:49882809-49882828 MS.gene45029:intron 20.0%
!! TTGGTTAACTATTTACTTAT+AGG + chr1.2:49882905-49882924 MS.gene45029:intron 20.0%
!! TTTGGATTCAAATAAGTAAA+TGG + chr1.2:49882808-49882827 MS.gene45029:intron 20.0%
!!! AAATTCTTTTACTTTTTAGG+GGG + chr1.2:49883338-49883357 MS.gene45029:intron 20.0%
!!! ATTAAGTTGTTTATCAAAAC+AGG + chr1.2:49884892-49884911 MS.gene45029:intron 20.0%
!!! GAAATAAAGTCAAATTGTTT+TGG + chr1.2:49884628-49884647 MS.gene45029:intron 20.0%
!!! TATCAATTTTTCAATGTTTG+AGG + chr1.2:49883907-49883926 MS.gene45029:CDS 20.0%
!!! TTAAGTTGTTTATCAAAACA+GGG + chr1.2:49884893-49884912 MS.gene45029:intron 20.0%
!!! TTAATTATTTTAGCTAGCTT+AGG + chr1.2:49882930-49882949 MS.gene45029:intron 20.0%
! AAACTATTCTACAATTGCAA+TGG - chr1.2:49882887-49882906 None:intergenic 25.0%
! ATAAAACAACTATAGCACAA+TGG - chr1.2:49883710-49883729 None:intergenic 25.0%
! ATGAAAACAACTTATAGCTT+AGG - chr1.2:49884919-49884938 None:intergenic 25.0%
! ATTGCAATTGTAGAATAGTT+TGG + chr1.2:49882886-49882905 MS.gene45029:intron 25.0%
! GAATGATGTAAATATCAAGA+AGG + chr1.2:49882275-49882294 MS.gene45029:CDS 25.0%
! TGTTAAATGATATCCATGTT+TGG + chr1.2:49884395-49884414 MS.gene45029:intron 25.0%
! TTTCAATCATTGACGAAATT+TGG - chr1.2:49884426-49884445 None:intergenic 25.0%
!! TCTAAAATGAACTTGCATTA+AGG - chr1.2:49883650-49883669 None:intergenic 25.0%
!! TTCTTTTGCAAAGAAAAGTA+CGG - chr1.2:49883780-49883799 None:intergenic 25.0%
!!! AAAGTCAAATTGTTTTGGAT+TGG + chr1.2:49884633-49884652 MS.gene45029:intron 25.0%
!!! TTTGTTTTATTTCCAGATGT+TGG - chr1.2:49884028-49884047 None:intergenic 25.0%
AAAAGCTTATAAACATGCCA+TGG - chr1.2:49884725-49884744 None:intergenic 30.0%
AAACACTTGTGAAACTGTTT+GGG + chr1.2:49884681-49884700 MS.gene45029:intron 30.0%
AAAGCTATTTATGTCCTGTT+TGG + chr1.2:49884541-49884560 MS.gene45029:intron 30.0%
AAAGCTTATAAACATGCCAT+GGG - chr1.2:49884724-49884743 None:intergenic 30.0%
AAGACTCTAATGACTAATGA+AGG - chr1.2:49885082-49885101 None:intergenic 30.0%
AATGCAAAATAGTCAAACTC+TGG + chr1.2:49883520-49883539 MS.gene45029:intron 30.0%
ACTAGTAATGCTAAATCACT+GGG + chr1.2:49884369-49884388 MS.gene45029:intron 30.0%
ATGTTGCATCATTTGATTAG+AGG + chr1.2:49882532-49882551 MS.gene45029:intron 30.0%
GAACAATCAGCTATTACATT+TGG - chr1.2:49883407-49883426 None:intergenic 30.0%
GATGCTGTTATGAAGATAAA+GGG - chr1.2:49883756-49883775 None:intergenic 30.0%
GTAATTATGTGACTTATGCA+TGG + chr1.2:49882679-49882698 MS.gene45029:intron 30.0%
GTATACGTTCATGTGAAAAT+GGG + chr1.2:49882487-49882506 MS.gene45029:intron 30.0%
GTTACTATAAATTTCCAGCA+AGG + chr1.2:49883848-49883867 MS.gene45029:CDS 30.0%
TACTAGTAATGCTAAATCAC+TGG + chr1.2:49884368-49884387 MS.gene45029:intron 30.0%
TAGCACTTATGAGACTATTT+GGG - chr1.2:49885019-49885038 None:intergenic 30.0%
TGATGCTGTTATGAAGATAA+AGG - chr1.2:49883757-49883776 None:intergenic 30.0%
TGCTGGAAATTTATAGTAAC+TGG - chr1.2:49883848-49883867 None:intergenic 30.0%
TGTATACGTTCATGTGAAAA+TGG + chr1.2:49882486-49882505 MS.gene45029:intron 30.0%
TTAGCACTTATGAGACTATT+TGG - chr1.2:49885020-49885039 None:intergenic 30.0%
! AAGTCCAAAAGTGTGAAAAA+CGG - chr1.2:49883429-49883448 None:intergenic 30.0%
! ATCGGTGACAAAATAACTTT+TGG - chr1.2:49884476-49884495 None:intergenic 30.0%
! GTACTTTTCTTTGCAAAAGA+AGG + chr1.2:49883779-49883798 MS.gene45029:CDS 30.0%
! GTATTATCTATGTGTTGCTA+GGG + chr1.2:49883038-49883057 MS.gene45029:intron 30.0%
! TATTTTCCTTTGTTGACGTA+AGG - chr1.2:49883817-49883836 None:intergenic 30.0%
! TCGGTGACAAAATAACTTTT+GGG - chr1.2:49884475-49884494 None:intergenic 30.0%
! TGGGTTGAACAATAAATTTG+TGG + chr1.2:49882506-49882525 MS.gene45029:intron 30.0%
! TGTATTATCTATGTGTTGCT+AGG + chr1.2:49883037-49883056 MS.gene45029:intron 30.0%
! TTGTATTGATGACTTTCCTT+AGG + chr1.2:49883561-49883580 MS.gene45029:intron 30.0%
! TTGTTTTCCTTTGACGATAT+CGG + chr1.2:49883062-49883081 MS.gene45029:intron 30.0%
!! AGTTGTTTTCATAAGCTATC+TGG - chr1.2:49884770-49884789 None:intergenic 30.0%
!! TTATTTTGCATGGAGTGTTA+TGG + chr1.2:49883378-49883397 MS.gene45029:intron 30.0%
AAACACTCTCAATAACCTCA+AGG - chr1.2:49883305-49883324 None:intergenic 35.0%
AACACTCTCAATAACCTCAA+GGG - chr1.2:49883304-49883323 None:intergenic 35.0%
AACGTAACAAGAAAAAACCC+AGG - chr1.2:49882333-49882352 None:intergenic 35.0%
AGAAGGATAAAGGAGAATTC+CGG + chr1.2:49884080-49884099 MS.gene45029:CDS 35.0%
AGACTATTTGGGAGAGTTTA+TGG - chr1.2:49885008-49885027 None:intergenic 35.0%
AGCATAAGCACTTGTCATAT+AGG - chr1.2:49884861-49884880 None:intergenic 35.0%
ATAAATTTCCAGCAAGGTCT+TGG + chr1.2:49883854-49883873 MS.gene45029:CDS 35.0%
ATCAGTTAGCTGAGATTGAT+CGG - chr1.2:49884494-49884513 None:intergenic 35.0%
ATGGGTAATATAGGAAGTAG+CGG + chr1.2:49881949-49881968 MS.gene45029:CDS 35.0%
CAAACACTTGTGAAACTGTT+TGG + chr1.2:49884680-49884699 MS.gene45029:intron 35.0%
GGAATCTGAGTTATTGAAAG+TGG + chr1.2:49883928-49883947 MS.gene45029:CDS 35.0%
TAAAACACCTAGTTCCTTAG+AGG + chr1.2:49883622-49883641 MS.gene45029:intron 35.0%
TAAAGGAGAATTCCGGTTAA+AGG + chr1.2:49884087-49884106 MS.gene45029:CDS 35.0%
TCTCAAAATAGATTCCAGCT+TGG - chr1.2:49883275-49883294 None:intergenic 35.0%
TGACTAATGAAGGACATGTT+TGG - chr1.2:49885072-49885091 None:intergenic 35.0%
TTAGGAAGCTGATATGACAA+AGG + chr1.2:49882948-49882967 MS.gene45029:intron 35.0%
TTAGGATAATTCTGATACGG+AGG - chr1.2:49882099-49882118 None:intergenic 35.0%
! AAACTGTTTGGGATAGCTTA+TGG + chr1.2:49884692-49884711 MS.gene45029:intron 35.0%
! AGATAACACACTCTTTTCCA+GGG - chr1.2:49884210-49884229 None:intergenic 35.0%
! ATGTGACTTATGCATGGTTT+TGG + chr1.2:49882685-49882704 MS.gene45029:intron 35.0%
! ATTGATGACTTTCCTTAGGA+AGG + chr1.2:49883565-49883584 MS.gene45029:intron 35.0%
! GTTTTTCACACTTTTGGACT+TGG + chr1.2:49883428-49883447 MS.gene45029:intron 35.0%
! TGATTAGAGGTACAATGAGT+TGG + chr1.2:49882545-49882564 MS.gene45029:intron 35.0%
! TGTTTTCCTTTGACGATATC+GGG + chr1.2:49883063-49883082 MS.gene45029:intron 35.0%
!! TGTTCCGTTTTTCACACTTT+TGG + chr1.2:49883422-49883441 MS.gene45029:intron 35.0%
AAAATGTGCATGCCTTCCTA+AGG - chr1.2:49883580-49883599 None:intergenic 40.0%
AAATTGATACCAGTTCCAGC+TGG - chr1.2:49883896-49883915 None:intergenic 40.0%
AACCTGATGAGGAAAATCCT+GGG + chr1.2:49882313-49882332 MS.gene45029:CDS 40.0%
AACTCAAGCAGTGTTTGAGA+AGG + chr1.2:49884063-49884082 MS.gene45029:CDS 40.0%
AACTTCAGTTGAGAGTGACT+TGG + chr1.2:49884174-49884193 MS.gene45029:CDS 40.0%
AAGCAGATATTGTGGGTGAA+TGG + chr1.2:49884115-49884134 MS.gene45029:CDS 40.0%
ACATGCACTGCAACAAAGAA+AGG - chr1.2:49885125-49885144 None:intergenic 40.0%
ACGTTTGATGCTACTGTTTC+TGG + chr1.2:49882354-49882373 MS.gene45029:CDS 40.0%
ACTAAGCTGCTTATCCAAAC+AGG - chr1.2:49884558-49884577 None:intergenic 40.0%
ACTGATGATTGAACCTGATG+AGG + chr1.2:49882302-49882321 MS.gene45029:CDS 40.0%
AGGTAGCTAAGCAGATATTG+TGG + chr1.2:49884107-49884126 MS.gene45029:CDS 40.0%
ATCTCCAAAAGCCTTTCTAC+TGG - chr1.2:49885207-49885226 None:intergenic 40.0%
CTGCAGGAGATATATGGTAT+TGG + chr1.2:49884151-49884170 MS.gene45029:CDS 40.0%
GCAGTGTTTGAGAAGGATAA+AGG + chr1.2:49884070-49884089 MS.gene45029:CDS 40.0%
GGTAGCTAAGCAGATATTGT+GGG + chr1.2:49884108-49884127 MS.gene45029:CDS 40.0%
TACAGGATAGATGTCCATGT+CGG - chr1.2:49883954-49883973 None:intergenic 40.0%
TAGAGAATGTAACACCAAGC+TGG + chr1.2:49883258-49883277 MS.gene45029:intron 40.0%
TAGCTTATGGAAATAGCCCA+TGG + chr1.2:49884705-49884724 MS.gene45029:intron 40.0%
TATGAGCTGCAGGAGATATA+TGG + chr1.2:49884145-49884164 MS.gene45029:CDS 40.0%
TATTGTGGGTGAATGGAATG+AGG + chr1.2:49884122-49884141 MS.gene45029:CDS 40.0%
TCAAATGAAACGCCAACATC+TGG + chr1.2:49884013-49884032 MS.gene45029:CDS 40.0%
TCTGCTTAGCTACCTTTAAC+CGG - chr1.2:49884102-49884121 None:intergenic 40.0%
TGCATCGTGTGAAATGTGAA+TGG + chr1.2:49882657-49882676 MS.gene45029:intron 40.0%
TTCTTTGCAAAAGAAGGCGA+CGG + chr1.2:49883785-49883804 MS.gene45029:CDS 40.0%
! ACAACCAGTAGAAAGGCTTT+TGG + chr1.2:49885200-49885219 MS.gene45029:CDS 40.0%
! AGAGGTACAATGAGTTGGAT+AGG + chr1.2:49882550-49882569 MS.gene45029:intron 40.0%
! CAGATAACACACTCTTTTCC+AGG - chr1.2:49884211-49884230 None:intergenic 40.0%
! TGACGATGATGGTGATCATA+CGG - chr1.2:49882168-49882187 None:intergenic 40.0%
!! AGGCTTTTGGAGATCAAAGT+TGG + chr1.2:49885213-49885232 MS.gene45029:CDS 40.0%
!! GGCTTTTGGAGATCAAAGTT+GGG + chr1.2:49885214-49885233 MS.gene45029:CDS 40.0%
!! GGTTTTGGTGAGATTGTTGT+TGG + chr1.2:49882700-49882719 MS.gene45029:intron 40.0%
!! TTAGGAAGGCATGCACATTT+TGG + chr1.2:49883579-49883598 MS.gene45029:intron 40.0%
!! TTGATGCTACTGTTTCTGGA+AGG + chr1.2:49882358-49882377 MS.gene45029:CDS 40.0%
!! TTTTGAGAGAATGTCCCTTG+AGG + chr1.2:49883287-49883306 MS.gene45029:intron 40.0%
!!! TTTTGGTGCTTCTTACCTCA+AGG + chr1.2:49883596-49883615 MS.gene45029:intron 40.0%
AAATTTGGCAGCGCCAAACA+TGG - chr1.2:49884411-49884430 None:intergenic 45.0%
AACTGTTCCTATGCCTTTGC+CGG + chr1.2:49882140-49882159 MS.gene45029:CDS 45.0%
ACTAAGTGAGGTCAGCTACA+TGG - chr1.2:49882607-49882626 None:intergenic 45.0%
AGGCGATTGACCCAATATCT+TGG + chr1.2:49882187-49882206 MS.gene45029:CDS 45.0%
ATGTAGCTGACCTCACTTAG+TGG + chr1.2:49882606-49882625 MS.gene45029:intron 45.0%
CGATTGACCCAATATCTTGG+AGG + chr1.2:49882190-49882209 MS.gene45029:CDS 45.0%
GAAAATACCATGTGGCGACA+GGG - chr1.2:49884265-49884284 None:intergenic 45.0%
GAACCTGATGAGGAAAATCC+TGG + chr1.2:49882312-49882331 MS.gene45029:CDS 45.0%
GCATCTGCTTTAACTGCTAC+AGG - chr1.2:49883971-49883990 None:intergenic 45.0%
GCTGACACCTCCAAGATATT+GGG - chr1.2:49882200-49882219 None:intergenic 45.0%
GGGAAACGGAAAATACCATG+TGG - chr1.2:49884273-49884292 None:intergenic 45.0%
GTATGATCACCATCATCGTC+AGG + chr1.2:49882167-49882186 MS.gene45029:CDS 45.0%
GTTATTGAAAGTGGCCGACA+TGG + chr1.2:49883937-49883956 MS.gene45029:CDS 45.0%
TCTAACAATCGTCGGAGACA+CGG + chr1.2:49881973-49881992 MS.gene45029:CDS 45.0%
TCTGCAGACAACCAGTAGAA+AGG + chr1.2:49885193-49885212 MS.gene45029:CDS 45.0%
TGACCTCACTTAGTGGGATA+AGG + chr1.2:49882613-49882632 MS.gene45029:intron 45.0%
TGCTGACACCTCCAAGATAT+TGG - chr1.2:49882201-49882220 None:intergenic 45.0%
TGTAGCTGACCTCACTTAGT+GGG + chr1.2:49882607-49882626 MS.gene45029:intron 45.0%
TTGTTGCAGTGCATGTGTAG+CGG + chr1.2:49885129-49885148 MS.gene45029:intron 45.0%
! AAAGGCATAGGAACAGTTCC+CGG - chr1.2:49882138-49882157 None:intergenic 45.0%
! AACCCAGGATTTTCCTCATC+AGG - chr1.2:49882318-49882337 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+AGG - chr1.2:49882619-49882638 None:intergenic 45.0%
! AGGCTTGAGTGTTGTTATCG+TGG + chr1.2:49882633-49882652 MS.gene45029:intron 45.0%
! CAGTTGAGAGTGACTTGGAT+GGG + chr1.2:49884179-49884198 MS.gene45029:CDS 45.0%
! CTTGCATTAAGGCACCTCTA+AGG - chr1.2:49883639-49883658 None:intergenic 45.0%
! GTAGCGGTTCTAACAATCGT+CGG + chr1.2:49881965-49881984 MS.gene45029:CDS 45.0%
! TAAGGCACCTCTAAGGAACT+AGG - chr1.2:49883632-49883651 None:intergenic 45.0%
! TCAGTTGAGAGTGACTTGGA+TGG + chr1.2:49884178-49884197 MS.gene45029:CDS 45.0%
! TCTACTGGTTGTCTGCAGAT+TGG - chr1.2:49885192-49885211 None:intergenic 45.0%
!!! CTAGGTGTTTTAACGCCTTG+AGG - chr1.2:49883614-49883633 None:intergenic 45.0%
!!! TATTAATATTTTGAATATTA+TGG + chr1.2:49883480-49883499 MS.gene45029:intron 5.0%
AATCGGTTACCAGCAGCATC+CGG - chr1.2:49882057-49882076 None:intergenic 50.0%
AGATGCATCTTCAAGCGACG+TGG + chr1.2:49883985-49884004 MS.gene45029:CDS 50.0%
CAAGCTCCCGATATCGTCAA+AGG - chr1.2:49883072-49883091 None:intergenic 50.0%
CAGAAGTTTAGACAGCCAGC+TGG + chr1.2:49883878-49883897 MS.gene45029:CDS 50.0%
CAGCAGCAGGGTAAACGAAT+CGG - chr1.2:49882074-49882093 None:intergenic 50.0%
CAGCTGGCTGTCTAAACTTC+TGG - chr1.2:49883880-49883899 None:intergenic 50.0%
CTGCGTCCTTACGTCAACAA+AGG + chr1.2:49883808-49883827 MS.gene45029:CDS 50.0%
GCCTTCTGATGCTCCACATA+CGG - chr1.2:49882243-49882262 None:intergenic 50.0%
GGAAAATACCATGTGGCGAC+AGG - chr1.2:49884266-49884285 None:intergenic 50.0%
TAATTACTATCCTCCGCCGC+CGG + chr1.2:49882116-49882135 MS.gene45029:CDS 50.0%
TGGAATGAGGTATGAGCTGC+AGG + chr1.2:49884135-49884154 MS.gene45029:CDS 50.0%
TTACCGGAGGATGAACTCGT+CGG - chr1.2:49882014-49882033 None:intergenic 50.0%
TTTAGACAGCCAGCTGGAAC+TGG + chr1.2:49883884-49883903 MS.gene45029:CDS 50.0%
! GCGGATGTGCGAAGGTTTTA+AGG + chr1.2:49885148-49885167 MS.gene45029:CDS 50.0%
! GTATGTGGAGCATCAGAAGG+CGG + chr1.2:49882242-49882261 MS.gene45029:CDS 50.0%
!! ATCTTGGAGGTGTCAGCAAC+AGG + chr1.2:49882203-49882222 MS.gene45029:CDS 50.0%
AACAATCGTCGGAGACACGG+TGG + chr1.2:49881976-49881995 MS.gene45029:CDS 55.0%
AATTACTATCCTCCGCCGCC+GGG + chr1.2:49882117-49882136 MS.gene45029:CDS 55.0%
ACTTCTGGCCAAGACCTTGC+TGG - chr1.2:49883865-49883884 None:intergenic 55.0%
ATACCATGTGGCGACAGGGA+AGG - chr1.2:49884261-49884280 None:intergenic 55.0%
GACTTGGATGGGAATGACCC+TGG + chr1.2:49884190-49884209 MS.gene45029:CDS 55.0%
GCATCTTCAAGCGACGTGGA+CGG + chr1.2:49883989-49884008 MS.gene45029:CDS 55.0%
GGCGGCGGAGGATAGTAATT+AGG - chr1.2:49882117-49882136 None:intergenic 55.0%
GGTCAATCGCCTGACGATGA+TGG - chr1.2:49882179-49882198 None:intergenic 55.0%
! GCCGTATGTGGAGCATCAGA+AGG + chr1.2:49882239-49882258 MS.gene45029:CDS 55.0%
! TGATGGTGATCATACGGCGC+CGG - chr1.2:49882162-49882181 None:intergenic 55.0%
!! CATGTGTAGCGGATGTGCGA+AGG + chr1.2:49885140-49885159 MS.gene45029:CDS 55.0%
AATCGTCGGAGACACGGTGG+CGG + chr1.2:49881979-49881998 MS.gene45029:CDS 60.0%
ATAGGAACAGTTCCCGGCGG+CGG - chr1.2:49882132-49882151 None:intergenic 60.0%
CACTCTTCAGGCTCAGGCTC+AGG - chr1.2:49885240-49885259 None:intergenic 60.0%
GATACGGAGGAGCAGCAGCA+GGG - chr1.2:49882086-49882105 None:intergenic 60.0%
GGAAGGACAGTTGTGTCGCG+AGG - chr1.2:49884244-49884263 None:intergenic 60.0%
GGCATAGGAACAGTTCCCGG+CGG - chr1.2:49882135-49882154 None:intergenic 60.0%
TGATACGGAGGAGCAGCAGC+AGG - chr1.2:49882087-49882106 None:intergenic 60.0%
TGATGCTCCACATACGGCGC+CGG - chr1.2:49882237-49882256 None:intergenic 60.0%
TGGCCGACGAGTTCATCCTC+CGG + chr1.2:49882008-49882027 MS.gene45029:CDS 60.0%
TGTCCTTCCCTGTCGCCACA+TGG + chr1.2:49884255-49884274 MS.gene45029:CDS 60.0%
TTACCAGCAGCATCCGGTGG+CGG - chr1.2:49882051-49882070 None:intergenic 60.0%
!! TGATCATACGGCGCCGGCAA+AGG - chr1.2:49882156-49882175 None:intergenic 60.0%
CGGTTACCAGCAGCATCCGG+TGG - chr1.2:49882054-49882073 None:intergenic 65.0%
! AGACACGGTGGCGGTGGAAG+TGG + chr1.2:49881988-49882007 MS.gene45029:CDS 65.0%
! GAGGTGTCAGCAACAGGCGC+CGG + chr1.2:49882209-49882228 MS.gene45029:CDS 65.0%
!! TACGGCGCCGGCAAAGGCAT+AGG - chr1.2:49882150-49882169 None:intergenic 65.0%
!! GGCGGTGGCGGAGGAGTTAC+CGG - chr1.2:49882030-49882049 None:intergenic 70.0%
!! GGTGGCGGAGGAGTTACCGG+AGG - chr1.2:49882027-49882046 None:intergenic 70.0%
GGAACAGTTCCCGGCGGCGG+AGG - chr1.2:49882129-49882148 None:intergenic 75.0%
! CCAGCAGCATCCGGTGGCGG+CGG - chr1.2:49882048-49882067 None:intergenic 75.0%
! CGTCGGAGACACGGTGGCGG+TGG + chr1.2:49881982-49882001 MS.gene45029:CDS 75.0%
!! TCAGCAACAGGCGCCGGCGC+CGG + chr1.2:49882215-49882234 MS.gene45029:CDS 75.0%
!! TCCACATACGGCGCCGGCGC+CGG - chr1.2:49882231-49882250 None:intergenic 75.0%
! CCGCCGCCACCGGATGCTGC+TGG + chr1.2:49882045-49882064 MS.gene45029:CDS 80.0%
! TCCTCCGCCACCGCCGCCAC+CGG + chr1.2:49882035-49882054 MS.gene45029:CDS 80.0%
!! GCAGCATCCGGTGGCGGCGG+TGG - chr1.2:49882045-49882064 None:intergenic 80.0%
!! GCATCCGGTGGCGGCGGTGG+CGG - chr1.2:49882042-49882061 None:intergenic 80.0%
!! TCCGGTGGCGGCGGTGGCGG+AGG - chr1.2:49882039-49882058 None:intergenic 85.0%
!!! GCCGGCGCCGGCGCCGTATG+TGG + chr1.2:49882227-49882246 MS.gene45029:CDS 85.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 49881949 49885260 49881949 ID=MS.gene45029
chr1.2 mRNA 49881949 49885260 49881949 ID=MS.gene45029.t1;Parent=MS.gene45029
chr1.2 exon 49881949 49882379 49881949 ID=MS.gene45029.t1.exon1;Parent=MS.gene45029.t1
chr1.2 CDS 49881949 49882379 49881949 ID=cds.MS.gene45029.t1;Parent=MS.gene45029.t1
chr1.2 exon 49883772 49884276 49883772 ID=MS.gene45029.t1.exon2;Parent=MS.gene45029.t1
chr1.2 CDS 49883772 49884276 49883772 ID=cds.MS.gene45029.t1;Parent=MS.gene45029.t1
chr1.2 exon 49885138 49885260 49885138 ID=MS.gene45029.t1.exon3;Parent=MS.gene45029.t1
chr1.2 CDS 49885138 49885260 49885138 ID=cds.MS.gene45029.t1;Parent=MS.gene45029.t1
Gene Sequence

>MS.gene45029

ATGGGTAATATAGGAAGTAGCGGTTCTAACAATCGTCGGAGACACGGTGGCGGTGGAAGTGGCCGACGAGTTCATCCTCCGGTAACTCCTCCGCCACCGCCGCCACCGGATGCTGCTGGTAACCGATTCGTTTACCCTGCTGCTGCTCCTCCGTATCAGAATTATCCTAATTACTATCCTCCGCCGCCGGGAACTGTTCCTATGCCTTTGCCGGCGCCGTATGATCACCATCATCGTCAGGCGATTGACCCAATATCTTGGAGGTGTCAGCAACAGGCGCCGGCGCCGGCGCCGTATGTGGAGCATCAGAAGGCGGTTACTATAAAGAATGATGTAAATATCAAGAAGGAGACACTGATGATTGAACCTGATGAGGAAAATCCTGGGTTTTTTCTTGTTACGTTTACGTTTGATGCTACTGTTTCTGGAAGGTAATAGTGTTTTTTTCTTACTTGATCTTGATGTATTATGTTAGTAAATTGATTTTGAAAAATTGATTCTAACTAAAAGTGAGTTGAATGTAACATGATTTATATCTGTATACGTTCATGTGAAAATGGGTTGAACAATAAATTTGTGGTTAATGTTGCATCATTTGATTAGAGGTACAATGAGTTGGATAGGTATATGATAGAACATTATAGCGGTGTTTGATCCATGTAGCTGACCTCACTTAGTGGGATAAGGCTTGAGTGTTGTTATCGTGGTTGCATCGTGTGAAATGTGAATGGTAATTATGTGACTTATGCATGGTTTTGGTGAGATTGTTGTTGGATCTTGTCATTGCTTTTTTTGATGAATTGTTGTTAGTGTTAATGAGCTTGTTTAATGTACACATGATTTAAGCTAAATTTGATTTTTTGGATTCAAATAAGTAAATGGGTGAAGTTACTTACTTAAATTTTTGTGTAATGATTAATGAGAGATTTCTAATGCCATTGCAATTGTAGAATAGTTTGGTTAACTATTTACTTATAGGCATTAATTATTTTAGCTAGCTTAGGAAGCTGATATGACAAAGGTTTGCAAATAGCATTTTTCGAATGAAATATAGAGTTGCTTGTGTTTATTTTGTGATTTACTGAGCATGTATTATCTATGTGTTGCTAGGGTTTGTTTTCCTTTGACGATATCGGGAGCTTGATTGAAATGCAGATTTTGTTGCTGCTAAAGATTGTTAGCATGTCAATTATCTTTATTTCATAATCAACATTGCTTATAAACACTCTGTTGTGTTCCTTTTTATTTTATTTTATTTTATTTCTTTCTGTTTGTTAAATATATTTTGGACTTCAAATTGATCACACGCTAGAGAATGTAACACCAAGCTGGAATCTATTTTGAGAGAATGTCCCTTGAGGTTATTGAGAGTGTTTTTTTTTTTTTTTTAAATTCTTTTACTTTTTAGGGGGTAGCGAGATTACTTAATTTATTTTGCATGGAGTGTTATGGAGTCCAAATGTAATAGCTGATTGTTCCGTTTTTCACACTTTTGGACTTGGAGATTTGTGAAATGAATATCATAATCTTTTATTAATATTTTGAATATTATGGTTGAATAGTTTAAAAACAATGCAAAATAGTCAAACTCTGGTCTATTTATTTATTTTTCTTGTATTGATGACTTTCCTTAGGAAGGCATGCACATTTTGGTGCTTCTTACCTCAAGGCGTTAAAACACCTAGTTCCTTAGAGGTGCCTTAATGCAAGTTCATTTTAGATTATGTATTCTATACTTTTTCTTGTTAAATGAAAATTCCATTGTGCTATAGTTGTTTTATTTGTTTGATCTAAATGTTTGTTTCCCTTTATCTTCATAACAGCATCACCGTACTTTTCTTTGCAAAAGAAGGCGACGGCTGCGTCCTTACGTCAACAAAGGAAAATATTCTTGCACCAGTTACTATAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGAACTGGTATCAATTTTTCAATGTTTGAGGAATCTGAGTTATTGAAAGTGGCCGACATGGACATCTATCCTGTAGCAGTTAAAGCAGATGCATCTTCAAGCGACGTGGACGGATCAAATGAAACGCCAACATCTGGAAATAAAACAAACACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGATAAAGGAGAATTCCGGTTAAAGGTAGCTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAACTTCAGTTGAGAGTGACTTGGATGGGAATGACCCTGGAAAAGAGTGTGTTATCTGCTTGTCAGAACCTCGCGACACAACTGTCCTTCCCTGTCGCCACATGGTATTTTCCGTTTCCCTTTGTAATTTAATTTTTCTTTTATAGATTGTTGGAATGACGCTGACATTAGCAACTTTGCTGTTGATATCACTAGTACTAGTAATGCTAAATCACTGGGAATTGTTAAATGATATCCATGTTTGGCGCTGCCAAATTTCGTCAATGATTGAAATTTCTTGTCATTTCTTATCATCTTAGCCCAAAAGTTATTTTGTCACCGATCAATCTCAGCTAACTGATTACTTTTTTTGCTCAACTTAATTGCTGAAAGCTATTTATGTCCTGTTTGGATAAGCAGCTTAGTTTCAAGCTTATAGTATAAGCGCTTAGTAAGCTATTCCTACAACAAAATATGAAATAAAGTCAAATTGTTTTGGATTGGCTTGTTTGAGCTTATCTATTGACACAAACACTTGTGAAACTGTTTGGGATAGCTTATGGAAATAGCCCATGGCATGTTTATAAGCTTTTTCAGCTTATTTCAATAAGCTCTCCAGATAGCTTATGAAAACAACTAGTAGCTTATATGAAAATAATTTGACTTTATTTTATCTTTTGTTATACAAATAGCTTATACATAATCACCTATATGACAAGTGCTTATGCTATATGCCTTTAATTAAGTTGTTTATCAAAACAGGGCCTAAGCTATAAGTTGTTTTCATAAACTATCTTGAAGTTTTTTATGAAAACAAGCTGAAAACAACTTATGAACATGTCATAAATTGTTTCCATAAACTCTCCCAAATAGTCTCATAAGTGCTAATGCTAGTAAACAAACTTAAATAAGTCAATCCAAACATGTCCTTCATTAGTCATTAGAGTCTTTGATATACTTTGACTCGATTCCTTTCTTTGTTGCAGTGCATGTGTAGCGGATGTGCGAAGGTTTTAAGGTTACAGACAAATAGATGTCCAATCTGCAGACAACCAGTAGAAAGGCTTTTGGAGATCAAAGTTGGGCCTGAGCCTGAGCCTGAAGAGTGA
Protein sequence

>MS.gene45029.t1

MGNIGSSGSNNRRRHGGGGSGRRVHPPVTPPPPPPPDAAGNRFVYPAAAPPYQNYPNYYPPPPGTVPMPLPAPYDHHHRQAIDPISWRCQQQAPAPAPYVEHQKAVTIKNDVNIKKETLMIEPDEENPGFFLVTFTFDATVSGSITVLFFAKEGDGCVLTSTKENILAPVTINFQQGLGQKFRQPAGTGINFSMFEESELLKVADMDIYPVAVKADASSSDVDGSNETPTSGNKTNTNSQITQAVFEKDKGEFRLKVAKQILWVNGMRYELQEIYGIGTSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRLQTNRCPICRQPVERLLEIKVGPEPEPEE