AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45097


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45097.t1 MTR_5g035150 95.495 333 15 0 4 336 103 435 0.0 666
MS.gene45097.t1 MTR_5g035080 72.372 333 85 3 5 334 94 422 1.62e-175 494
MS.gene45097.t1 MTR_5g035070 70.783 332 97 0 5 336 106 437 8.68e-173 487
MS.gene45097.t1 MTR_5g035090 69.277 332 100 2 5 336 102 431 7.71e-171 482
MS.gene45097.t1 MTR_3g109840 67.470 332 100 4 5 334 92 417 1.07e-165 468
MS.gene45097.t1 MTR_8g104970 65.060 332 109 4 5 333 139 466 1.10e-160 457
MS.gene45097.t1 MTR_7g033230 61.562 333 121 4 5 334 283 611 1.19e-148 432
MS.gene45097.t1 MTR_7g033230 61.562 333 121 4 5 334 353 681 9.66e-148 432
MS.gene45097.t1 MTR_5g035140 67.755 245 75 3 94 335 25 268 7.23e-125 359
MS.gene45097.t1 MTR_8g027900 40.181 331 188 5 6 332 231 555 2.91e-87 273
MS.gene45097.t1 MTR_8g099300 40.361 332 187 7 6 332 94 419 8.43e-86 265
MS.gene45097.t1 MTR_6g016880 39.222 334 186 9 6 333 98 420 8.93e-85 263
MS.gene45097.t1 MTR_7g019120 37.349 332 195 7 6 333 99 421 5.10e-79 248
MS.gene45097.t1 MTR_6g007777 37.910 335 192 7 5 334 136 459 2.45e-76 242
MS.gene45097.t1 MTR_6g016875 38.988 336 187 7 6 333 84 409 1.74e-75 238
MS.gene45097.t1 MTR_2g016060 37.243 341 190 11 6 334 74 402 1.90e-73 233
MS.gene45097.t1 MTR_1g076690 32.267 344 206 11 6 335 243 573 2.62e-55 189
MS.gene45097.t1 MTR_6g061710 31.378 341 211 11 6 334 187 516 3.20e-52 180
MS.gene45097.t1 MTR_7g094750 33.239 352 190 16 5 336 110 436 4.24e-47 165
MS.gene45097.t1 MTR_2g022560 32.471 348 193 13 7 336 118 441 4.46e-41 149
MS.gene45097.t1 MTR_0136s0010 32.370 346 194 14 6 334 190 512 1.55e-39 146
MS.gene45097.t1 MTR_1g058380 29.310 348 202 13 6 335 77 398 4.53e-39 143
MS.gene45097.t1 MTR_7g093450 31.988 347 197 13 6 336 268 591 3.29e-38 143
MS.gene45097.t1 MTR_5g059400 30.499 341 193 14 6 327 195 510 2.09e-37 140
MS.gene45097.t1 MTR_1g116130 30.499 341 193 14 6 327 195 510 2.09e-37 140
MS.gene45097.t1 MTR_4g126950 30.636 346 193 15 6 332 129 446 7.89e-37 137
MS.gene45097.t1 MTR_4g016940 29.855 345 200 14 6 332 107 427 8.30e-37 137
MS.gene45097.t1 MTR_8g069790 28.736 348 207 13 3 333 195 518 1.24e-35 135
MS.gene45097.t1 MTR_7g068920 30.946 349 191 13 6 332 101 421 1.43e-35 134
MS.gene45097.t1 MTR_8g093530 28.940 349 186 12 5 332 109 416 1.04e-34 132
MS.gene45097.t1 MTR_4g014440 29.882 338 203 15 7 328 84 403 2.72e-34 130
MS.gene45097.t1 MTR_8g463790 27.479 353 199 14 6 334 92 411 3.99e-34 130
MS.gene45097.t1 MTR_4g125060 28.746 327 197 10 16 328 163 467 7.89e-34 130
MS.gene45097.t1 MTR_4g125060 28.746 327 197 10 16 328 231 535 1.08e-33 130
MS.gene45097.t1 MTR_5g071350 29.377 337 207 11 5 328 77 395 1.15e-33 128
MS.gene45097.t1 MTR_4g125060 28.746 327 197 10 16 328 202 506 1.17e-33 130
MS.gene45097.t1 MTR_7g109550 30.058 346 196 14 6 336 157 471 1.84e-33 129
MS.gene45097.t1 MTR_7g070060 29.240 342 200 16 7 328 86 405 5.74e-33 126
MS.gene45097.t1 MTR_4g121560 28.024 339 212 12 6 332 135 453 6.27e-33 127
MS.gene45097.t1 MTR_5g033800 28.045 353 202 14 4 334 163 485 1.67e-32 126
MS.gene45097.t1 MTR_5g035120 73.611 72 19 0 5 76 94 165 6.92e-32 117
MS.gene45097.t1 MTR_3g070900 27.059 340 208 12 7 328 128 445 1.88e-31 123
MS.gene45097.t1 MTR_3g035830 28.698 338 184 11 5 328 50 344 3.56e-31 120
MS.gene45097.t1 MTR_3g090120 29.429 350 192 12 5 336 152 464 3.93e-31 122
MS.gene45097.t1 MTR_6g016240 29.226 349 202 14 6 332 91 416 6.71e-31 121
MS.gene45097.t1 MTR_3g464570 29.483 329 209 12 5 328 62 372 7.64e-31 120
MS.gene45097.t1 MTR_2g073510 29.042 334 202 12 3 332 51 353 3.12e-30 118
MS.gene45097.t1 MTR_4g092830 28.771 358 191 14 6 332 68 392 1.23e-29 117
MS.gene45097.t1 MTR_3g021060 29.141 326 198 11 5 328 65 359 1.89e-29 116
MS.gene45097.t1 MTR_3g021090 29.032 341 179 14 5 328 50 344 1.12e-28 115
MS.gene45097.t1 MTR_7g094750 33.761 234 124 10 5 222 110 328 1.35e-28 113
MS.gene45097.t1 MTR_5g083260 27.139 339 211 11 5 328 103 420 1.61e-27 112
MS.gene45097.t1 MTR_8g093870 25.152 330 213 8 16 332 164 472 1.79e-27 112
MS.gene45097.t1 MTR_2g073500 28.440 327 196 10 7 332 56 345 2.65e-27 110
MS.gene45097.t1 MTR_3g049330 29.429 333 190 14 5 328 50 346 2.26e-26 107
MS.gene45097.t1 MTR_3g071650 27.219 338 208 11 7 328 111 426 2.55e-26 108
MS.gene45097.t1 MTR_1g050448 26.888 331 209 11 7 332 73 375 7.27e-26 106
MS.gene45097.t1 MTR_5g082880 26.706 337 216 15 7 328 187 507 8.95e-26 107
MS.gene45097.t1 MTR_4g087730 28.793 323 197 10 5 325 64 355 1.44e-25 105
MS.gene45097.t1 MTR_4g088030 27.864 323 200 10 5 325 52 343 5.87e-25 103
MS.gene45097.t1 MTR_1g112210 25.862 348 188 14 5 328 77 378 6.88e-25 103
MS.gene45097.t1 MTR_2g091175 28.440 327 198 12 5 328 69 362 9.51e-25 103
MS.gene45097.t1 MTR_4g079700 28.788 330 201 12 5 332 66 363 1.73e-24 102
MS.gene45097.t1 MTR_5g034810 27.729 339 182 14 7 328 56 348 8.75e-24 100
MS.gene45097.t1 MTR_2g015720 27.647 340 193 13 5 332 60 358 2.02e-23 99.8
MS.gene45097.t1 MTR_1g112210 26.100 341 183 13 5 328 77 365 3.84e-23 99.0
MS.gene45097.t1 MTR_4g014430 25.862 348 209 14 5 332 128 446 5.89e-22 96.3
MS.gene45097.t1 MTR_5g033800 29.870 231 135 9 4 221 163 379 3.15e-21 93.6
MS.gene45097.t1 MTR_7g070060 27.653 311 183 16 38 328 15 303 3.37e-21 92.4
MS.gene45097.t1 MTR_7g019140 51.429 70 34 0 6 75 99 168 4.14e-21 89.0
MS.gene45097.t1 MTR_1g111010 25.758 330 198 10 7 332 55 341 8.38e-21 92.0
MS.gene45097.t1 MTR_4g102570 38.095 126 66 3 103 222 3 122 7.59e-20 85.1
MS.gene45097.t1 MTR_7g117160 36.129 155 64 6 177 331 70 189 3.35e-19 84.3
MS.gene45097.t1 MTR_7g070060 29.464 224 134 9 7 220 86 295 1.15e-18 85.5
MS.gene45097.t1 MTR_3g464570 27.972 286 179 13 50 328 3 268 1.65e-18 84.3
MS.gene45097.t1 MTR_7g019130 29.365 126 80 4 107 227 4 125 8.22e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45097.t1 AT1G70230 55.422 332 130 7 5 334 98 413 3.43e-134 388
MS.gene45097.t1 AT5G15890 40.841 333 178 8 5 333 206 523 7.55e-87 271
MS.gene45097.t1 AT1G01430 40.237 338 190 7 6 336 119 451 1.88e-85 265
MS.gene45097.t1 AT4G01080 40.120 334 187 7 6 336 111 434 8.99e-84 260
MS.gene45097.t1 AT3G02440 38.416 341 187 7 5 336 146 472 1.28e-83 261
MS.gene45097.t1 AT3G02440 38.416 341 187 7 5 336 154 480 1.32e-83 261
MS.gene45097.t1 AT4G23790 40.240 333 189 7 6 332 99 427 1.06e-81 254
MS.gene45097.t1 AT3G28150 39.521 334 188 8 5 334 89 412 2.94e-81 253
MS.gene45097.t1 AT4G11090 40.240 333 187 9 6 332 99 425 4.29e-78 245
MS.gene45097.t1 AT5G15900 36.982 338 197 9 5 336 86 413 7.04e-74 234
MS.gene45097.t1 AT5G15900 36.982 338 197 9 5 336 105 432 1.37e-73 234
MS.gene45097.t1 AT4G25360 33.430 344 202 10 6 334 195 526 2.63e-58 197
MS.gene45097.t1 AT4G25360 33.430 344 202 10 6 334 195 526 2.63e-58 197
MS.gene45097.t1 AT5G51640 34.366 355 198 14 1 334 150 490 2.32e-55 188
MS.gene45097.t1 AT5G19160 34.795 342 198 11 7 336 120 448 4.84e-48 168
MS.gene45097.t1 AT3G06080 32.164 342 204 11 7 336 124 449 9.22e-45 159
MS.gene45097.t1 AT3G11570 31.124 347 188 14 7 332 103 419 3.85e-41 149
MS.gene45097.t1 AT5G64020 31.268 339 193 13 16 332 88 408 4.51e-41 148
MS.gene45097.t1 AT3G12060 30.548 347 199 15 6 334 216 538 3.99e-40 148
MS.gene45097.t1 AT2G14530 31.909 351 190 16 5 332 82 406 4.25e-40 145
MS.gene45097.t1 AT5G20590 31.157 337 195 12 6 328 162 475 1.07e-37 140
MS.gene45097.t1 AT5G06700 30.702 342 205 14 6 334 275 597 5.09e-37 140
MS.gene45097.t1 AT1G48880 31.977 344 186 15 5 335 134 442 2.17e-35 134
MS.gene45097.t1 AT5G58600 29.912 341 204 11 3 332 84 400 3.36e-35 132
MS.gene45097.t1 AT5G06230 29.885 348 191 15 7 332 48 364 4.88e-35 131
MS.gene45097.t1 AT5G06230 29.885 348 191 15 7 332 89 405 1.10e-34 131
MS.gene45097.t1 AT1G60790 27.586 348 213 13 3 333 209 534 6.61e-33 128
MS.gene45097.t1 AT5G49340 28.280 343 207 12 7 332 121 441 8.46e-33 127
MS.gene45097.t1 AT3G62390 27.566 341 215 12 5 335 157 475 1.27e-31 124
MS.gene45097.t1 AT5G01360 27.273 341 215 12 6 332 57 378 1.65e-31 122
MS.gene45097.t1 AT5G64470 27.003 337 218 10 6 332 76 394 1.70e-31 122
MS.gene45097.t1 AT2G30010 27.809 356 187 10 8 332 80 396 2.67e-31 122
MS.gene45097.t1 AT2G37720 28.657 335 195 11 16 332 174 482 4.03e-31 122
MS.gene45097.t1 AT2G30010 28.691 359 180 13 8 332 123 439 4.20e-31 122
MS.gene45097.t1 AT5G01360 27.273 341 215 12 6 332 113 434 6.05e-31 121
MS.gene45097.t1 AT2G38320 27.463 335 215 12 7 328 81 400 8.66e-31 120
MS.gene45097.t1 AT2G38320 27.914 326 207 12 16 328 7 317 1.02e-30 119
MS.gene45097.t1 AT5G20680 28.402 338 192 10 16 332 149 457 1.03e-30 121
MS.gene45097.t1 AT5G20680 28.402 338 192 10 16 332 225 533 2.17e-30 121
MS.gene45097.t1 AT5G20680 28.402 338 192 10 16 332 243 551 2.67e-30 121
MS.gene45097.t1 AT5G20680 28.402 338 192 10 16 332 243 551 2.67e-30 121
MS.gene45097.t1 AT5G20680 28.402 338 192 10 16 332 243 551 2.67e-30 121
MS.gene45097.t1 AT5G20680 28.402 338 192 10 16 332 243 551 2.67e-30 121
MS.gene45097.t1 AT2G30900 28.049 328 200 12 7 328 64 361 8.34e-30 117
MS.gene45097.t1 AT3G14850 31.138 334 192 10 5 332 53 354 9.91e-30 117
MS.gene45097.t1 AT5G64470 26.706 337 225 10 6 332 76 400 1.16e-29 117
MS.gene45097.t1 AT5G19160 36.726 226 122 8 7 221 120 335 1.33e-29 116
MS.gene45097.t1 AT1G73140 28.116 345 195 14 6 328 88 401 1.44e-29 117
MS.gene45097.t1 AT2G40160 25.843 356 211 14 7 336 99 427 2.17e-29 117
MS.gene45097.t1 AT3G11030 26.923 338 214 11 5 328 126 444 5.05e-29 116
MS.gene45097.t1 AT3G55990 26.087 345 219 11 7 335 162 486 8.49e-29 116
MS.gene45097.t1 AT2G40160 26.801 347 203 15 7 328 99 419 1.16e-28 115
MS.gene45097.t1 AT2G31110 27.273 330 205 12 6 332 65 362 1.78e-27 110
MS.gene45097.t1 AT2G40320 26.100 341 208 12 7 328 103 418 1.64e-26 109
MS.gene45097.t1 AT2G42570 29.586 338 185 17 7 332 68 364 2.08e-26 108
MS.gene45097.t1 AT1G29050 28.701 331 201 14 5 332 80 378 6.58e-26 107
MS.gene45097.t1 AT2G40150 25.852 352 218 16 7 335 93 424 7.67e-26 107
MS.gene45097.t1 AT3G06080 31.556 225 135 6 7 221 124 339 1.77e-25 105
MS.gene45097.t1 AT2G34070 26.807 332 207 12 5 332 84 383 2.43e-25 105
MS.gene45097.t1 AT3G54260 25.444 338 210 12 5 332 69 374 1.14e-24 103
MS.gene45097.t1 AT5G20590 31.878 229 130 9 6 221 162 377 8.33e-24 100
MS.gene45097.t1 AT1G78710 28.972 321 193 13 16 332 67 356 2.93e-23 99.4
MS.gene45097.t1 AT5G58600 31.982 222 131 8 3 220 84 289 5.61e-21 91.7
MS.gene45097.t1 AT5G06230 30.769 234 127 10 7 222 89 305 1.65e-20 90.9
MS.gene45097.t1 AT5G01620 24.425 348 214 13 5 332 139 457 2.30e-20 92.0
MS.gene45097.t1 AT5G01620 24.425 348 214 13 5 332 131 449 2.45e-20 91.7
MS.gene45097.t1 AT5G01620 24.425 348 214 13 5 332 131 449 2.45e-20 91.7
MS.gene45097.t1 AT3G62390 27.111 225 151 5 5 223 157 374 5.25e-20 90.5
MS.gene45097.t1 AT2G40160 35.965 114 62 2 7 115 99 206 9.57e-19 85.9
MS.gene45097.t1 AT2G30900 33.113 151 94 3 7 156 64 208 1.27e-17 82.0
MS.gene45097.t1 AT5G64470 25.911 247 166 7 6 242 76 315 7.33e-17 80.5
MS.gene45097.t1 AT5G64470 26.016 246 165 7 6 241 76 314 7.65e-17 80.5
MS.gene45097.t1 AT2G31110 31.333 150 96 3 6 155 65 207 5.03e-16 77.4
MS.gene45097.t1 AT3G14850 28.369 282 164 10 57 332 2 251 1.12e-14 73.2
MS.gene45097.t1 AT1G78710 31.429 140 90 2 16 155 60 193 6.57e-13 68.9

Find 71 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTCAATTATTCTATTA+AGG 0.091257 5.3:-24059522 None:intergenic
CTGATTTAGGTTATCTTTAT+TGG 0.135262 5.3:+24059005 MS.gene45097:CDS
GTCCTCAAAGCCTTTCTTAA+AGG 0.191336 5.3:-24059496 None:intergenic
TATGAGAGTGATTTAGTTCT+TGG 0.213205 5.3:+24059424 MS.gene45097:CDS
GTGCCACTTACGGAATTTAT+TGG 0.276669 5.3:-24059206 None:intergenic
TGCAAAGAAGTGACTCTAAT+TGG 0.285207 5.3:-24059135 None:intergenic
ACAAATGGTAGACCTGATTT+AGG 0.287971 5.3:+24058992 MS.gene45097:CDS
TTGAGACCAGATGGTCATTC+AGG 0.301177 5.3:+24059793 MS.gene45097:CDS
CCTCTCAATTATTCTATTAA+GGG 0.325837 5.3:-24059521 None:intergenic
ATTTATTGGTCTTGCCATCT+TGG 0.346199 5.3:-24059192 None:intergenic
AAAGTGTTTGGTTCAAATCT+TGG 0.349855 5.3:-24059055 None:intergenic
GAATGGATGGTGAGATTAGA+AGG 0.357080 5.3:+24059677 MS.gene45097:CDS
TCACTCTCATAGTAAATTGA+TGG 0.370160 5.3:-24059412 None:intergenic
AGGAAAGTTGCTAAAGGAAA+TGG 0.381708 5.3:+24059541 MS.gene45097:CDS
TCAACACCATGCACTATAAA+CGG 0.382294 5.3:-24059268 None:intergenic
GGTGTTGGATGTAACTAAAT+TGG 0.388499 5.3:+24059765 MS.gene45097:CDS
GGAGAAGATAGTTGGAGGAA+TGG 0.393313 5.3:+24059660 MS.gene45097:CDS
CAACACCATGCACTATAAAC+GGG 0.408667 5.3:-24059267 None:intergenic
GTTTGTTCTTAATGAGTTTG+AGG 0.410280 5.3:-24059078 None:intergenic
AGAAAAGAGGAGAAGATAGT+TGG 0.414140 5.3:+24059652 MS.gene45097:CDS
TTCCTTTAAGAAAGGCTTTG+AGG 0.416940 5.3:+24059494 MS.gene45097:CDS
GGCAAAGGATATTGATCAAA+TGG 0.424223 5.3:+24059351 MS.gene45097:CDS
CTTAACCTTGTTTACCAAGA+TGG 0.429398 5.3:+24059178 MS.gene45097:CDS
TTTGGAACTCCATTTGCAAA+TGG 0.431908 5.3:-24059835 None:intergenic
ACTCCATTTGCAAATGGAAA+AGG 0.436668 5.3:-24059829 None:intergenic
ATTTGAAGGTATTAGATTTG+AGG 0.443567 5.3:+24059744 MS.gene45097:CDS
CAATAAAGATAACCTAAATC+AGG 0.445212 5.3:-24059004 None:intergenic
TGTAGAGATGATGAAGAAGC+GGG 0.445533 5.3:+24059924 MS.gene45097:CDS
ACAAAAGCTAATAAATTTGA+AGG 0.447815 5.3:+24059730 MS.gene45097:CDS
CTTGGTAGATTACACTCACT+TGG 0.451639 5.3:-24059037 None:intergenic
TGTGTTCATTGGTGCTTGCC+AGG 0.456446 5.3:+24059874 MS.gene45097:CDS
TACAAAACGATTGTGTTCAT+TGG 0.458956 5.3:+24059863 MS.gene45097:CDS
TTTATAGTGCATGGTGTTGA+AGG 0.460100 5.3:+24059271 MS.gene45097:CDS
TAGGTTATCTTTATTGGAGA+TGG 0.460710 5.3:+24059011 MS.gene45097:CDS
ATGAGTTTGAGGAAAGTGTT+TGG 0.469541 5.3:-24059067 None:intergenic
AAGGATTGAGATAGAAGAAG+TGG 0.473823 5.3:+24059696 MS.gene45097:CDS
GACTAAGCCTTATAGAAAAG+AGG 0.487707 5.3:+24059639 MS.gene45097:CDS
TAAGGACCTGAATGACCATC+TGG 0.495026 5.3:-24059799 None:intergenic
AATGGAAAAGGATTCATGTA+AGG 0.496598 5.3:-24059817 None:intergenic
AGTGAGAGATGCATCACAAA+TGG 0.499969 5.3:+24058977 MS.gene45097:CDS
TGCCAGGACCTATAGATACT+TGG 0.502047 5.3:+24059890 MS.gene45097:CDS
GACATGATTGTTGTATCAAC+TGG 0.507795 5.3:+24059373 MS.gene45097:CDS
TTGTTGGAGATTCTTTGGCT+AGG 0.514286 5.3:+24059110 MS.gene45097:CDS
TGGTCCCCGTTTATAGTGCA+TGG 0.514963 5.3:+24059262 MS.gene45097:CDS
AAAGAGGAGAAGATAGTTGG+AGG 0.516930 5.3:+24059655 MS.gene45097:CDS
CTCTTTGATTGTGCCACATG+TGG 0.519016 5.3:-24058954 None:intergenic
CGGGGACCAATACAAAGAAA+AGG 0.521289 5.3:-24059248 None:intergenic
GAAGGTGATTGGGATAAGGC+TGG 0.521359 5.3:+24059604 MS.gene45097:CDS
ATCTCATTCCAAGTATCTAT+AGG 0.524335 5.3:-24059898 None:intergenic
TGGATCTTGTTAATGAGAGG+TGG 0.535305 5.3:+24059329 MS.gene45097:CDS
AGGTATTAGATTTGAGGTGT+TGG 0.536677 5.3:+24059750 MS.gene45097:CDS
TTCCAAGTATCTATAGGTCC+TGG 0.536833 5.3:-24059892 None:intergenic
AGACCAATAAATTCCGTAAG+TGG 0.539340 5.3:+24059203 MS.gene45097:CDS
AAGATAGTTGGAGGAATGGA+TGG 0.542345 5.3:+24059664 MS.gene45097:CDS
GGATCTTGTTAATGAGAGGT+GGG 0.544161 5.3:+24059330 MS.gene45097:CDS
GAGAAGGAAAGTGCCACTTA+CGG 0.549343 5.3:-24059216 None:intergenic
TTGTAGAGATGATGAAGAAG+CGG 0.549572 5.3:+24059923 MS.gene45097:CDS
CAATCACCTTCAAAATGAGC+AGG 0.550833 5.3:-24059592 None:intergenic
GGTGTTGAAGGATCAAATGA+AGG 0.557511 5.3:+24059283 MS.gene45097:CDS
ATTGAGAGGAAAGTTGCTAA+AGG 0.566358 5.3:+24059535 MS.gene45097:CDS
TCTTGCCATCTTGGTAAACA+AGG 0.568916 5.3:-24059183 None:intergenic
TTGGCATTATTGAGACCAGA+TGG 0.590154 5.3:+24059784 MS.gene45097:CDS
TGTTAATGAGAGGTGGGCAA+AGG 0.594392 5.3:+24059336 MS.gene45097:CDS
GAAAAGGTATCATTATGAGA+AGG 0.599288 5.3:-24059232 None:intergenic
TTGTTGTATCAACTGGCCAT+TGG 0.619734 5.3:+24059380 MS.gene45097:CDS
ATTGTGCCACATGTGGTGAG+TGG 0.619798 5.3:-24058947 None:intergenic
GTGTTGAAGGATCAAATGAA+GGG 0.628849 5.3:+24059284 MS.gene45097:CDS
ATTTGAGTATGATTAAACTC+AGG 0.636695 5.3:-24059460 None:intergenic
ATGTCACCACTCACCACATG+TGG 0.638779 5.3:+24058941 MS.gene45097:CDS
CCCTTAATAGAATAATTGAG+AGG 0.661863 5.3:+24059521 MS.gene45097:CDS
AACACCATGCACTATAAACG+GGG 0.681835 5.3:-24059266 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATAATACGATGTTTT+TGG + chr5.3:24059309-24059328 MS.gene45097:CDS 15.0%
!! ACAAAAGCTAATAAATTTGA+AGG + chr5.3:24059730-24059749 MS.gene45097:CDS 20.0%
!!! AAATTTATTAGCTTTTGTCT+TGG - chr5.3:24059728-24059747 None:intergenic 20.0%
!!! TTTTTTTGTTCCTTTAAGAA+AGG + chr5.3:24059486-24059505 MS.gene45097:CDS 20.0%
! ATTTGAGTATGATTAAACTC+AGG - chr5.3:24059463-24059482 None:intergenic 25.0%
! CAATAAAGATAACCTAAATC+AGG - chr5.3:24059007-24059026 None:intergenic 25.0%
! CCTCTCAATTATTCTATTAA+GGG - chr5.3:24059524-24059543 None:intergenic 25.0%
! TCCTCTCAATTATTCTATTA+AGG - chr5.3:24059525-24059544 None:intergenic 25.0%
!! AACAAACATATAGCTTTTGT+TGG + chr5.3:24059094-24059113 MS.gene45097:CDS 25.0%
!! ATGATACCTTTTCTTTGTAT+TGG + chr5.3:24059242-24059261 MS.gene45097:CDS 25.0%
!! CAATCGTTTTGTACATATTT+TGG - chr5.3:24059856-24059875 None:intergenic 25.0%
!! CTGATTTAGGTTATCTTTAT+TGG + chr5.3:24059005-24059024 MS.gene45097:CDS 25.0%
!!! ATTTGAAGGTATTAGATTTG+AGG + chr5.3:24059744-24059763 MS.gene45097:CDS 25.0%
AATGGAAAAGGATTCATGTA+AGG - chr5.3:24059820-24059839 None:intergenic 30.0%
ATCTCATTCCAAGTATCTAT+AGG - chr5.3:24059901-24059920 None:intergenic 30.0%
CCCTTAATAGAATAATTGAG+AGG + chr5.3:24059521-24059540 MS.gene45097:CDS 30.0%
GTTTGTTCTTAATGAGTTTG+AGG - chr5.3:24059081-24059100 None:intergenic 30.0%
TACAAAACGATTGTGTTCAT+TGG + chr5.3:24059863-24059882 MS.gene45097:CDS 30.0%
TAGGTTATCTTTATTGGAGA+TGG + chr5.3:24059011-24059030 MS.gene45097:CDS 30.0%
TCACTCTCATAGTAAATTGA+TGG - chr5.3:24059415-24059434 None:intergenic 30.0%
! AAAGTGTTTGGTTCAAATCT+TGG - chr5.3:24059058-24059077 None:intergenic 30.0%
! AATCCTTTTCCATTTGCAAA+TGG + chr5.3:24059826-24059845 MS.gene45097:CDS 30.0%
! ATCTTCTCCTCTTTTCTATA+AGG - chr5.3:24059649-24059668 None:intergenic 30.0%
! TTTTGGATCTTGTTAATGAG+AGG + chr5.3:24059326-24059345 MS.gene45097:CDS 30.0%
!! GAAAAGGTATCATTATGAGA+AGG - chr5.3:24059235-24059254 None:intergenic 30.0%
!! TATGAGAGTGATTTAGTTCT+TGG + chr5.3:24059424-24059443 MS.gene45097:CDS 30.0%
AAGGATTGAGATAGAAGAAG+TGG + chr5.3:24059696-24059715 MS.gene45097:CDS 35.0%
ACAAATGGTAGACCTGATTT+AGG + chr5.3:24058992-24059011 MS.gene45097:CDS 35.0%
ACTCCATTTGCAAATGGAAA+AGG - chr5.3:24059832-24059851 None:intergenic 35.0%
AGAAAAGAGGAGAAGATAGT+TGG + chr5.3:24059652-24059671 MS.gene45097:CDS 35.0%
AGACCAATAAATTCCGTAAG+TGG + chr5.3:24059203-24059222 MS.gene45097:CDS 35.0%
AGGAAAGTTGCTAAAGGAAA+TGG + chr5.3:24059541-24059560 MS.gene45097:CDS 35.0%
ATTGAGAGGAAAGTTGCTAA+AGG + chr5.3:24059535-24059554 MS.gene45097:CDS 35.0%
GACATGATTGTTGTATCAAC+TGG + chr5.3:24059373-24059392 MS.gene45097:CDS 35.0%
GGCAAAGGATATTGATCAAA+TGG + chr5.3:24059351-24059370 MS.gene45097:CDS 35.0%
GTGTTGAAGGATCAAATGAA+GGG + chr5.3:24059284-24059303 MS.gene45097:CDS 35.0%
TCAACACCATGCACTATAAA+CGG - chr5.3:24059271-24059290 None:intergenic 35.0%
TGCAAAGAAGTGACTCTAAT+TGG - chr5.3:24059138-24059157 None:intergenic 35.0%
TTGATGGAAGCAAAAACCAA+TGG - chr5.3:24059399-24059418 None:intergenic 35.0%
TTGTAGAGATGATGAAGAAG+CGG + chr5.3:24059923-24059942 MS.gene45097:CDS 35.0%
! AGCTTTTGTTGGAGATTCTT+TGG + chr5.3:24059105-24059124 MS.gene45097:CDS 35.0%
! AGGTATTAGATTTGAGGTGT+TGG + chr5.3:24059750-24059769 MS.gene45097:CDS 35.0%
! CTTAACCTTGTTTACCAAGA+TGG + chr5.3:24059178-24059197 MS.gene45097:CDS 35.0%
! GACTAAGCCTTATAGAAAAG+AGG + chr5.3:24059639-24059658 MS.gene45097:CDS 35.0%
! GGTGTTGGATGTAACTAAAT+TGG + chr5.3:24059765-24059784 MS.gene45097:CDS 35.0%
! TTCCTTTAAGAAAGGCTTTG+AGG + chr5.3:24059494-24059513 MS.gene45097:CDS 35.0%
! TTTATAGTGCATGGTGTTGA+AGG + chr5.3:24059271-24059290 MS.gene45097:CDS 35.0%
! TTTGGAACTCCATTTGCAAA+TGG - chr5.3:24059838-24059857 None:intergenic 35.0%
! TTTTCACCTGCTCATTTTGA+AGG + chr5.3:24059586-24059605 MS.gene45097:CDS 35.0%
!! ATGAGTTTGAGGAAAGTGTT+TGG - chr5.3:24059070-24059089 None:intergenic 35.0%
!! ATTTATTGGTCTTGCCATCT+TGG - chr5.3:24059195-24059214 None:intergenic 35.0%
!! TGCTCATTTTGAAGGTGATT+GGG + chr5.3:24059594-24059613 MS.gene45097:CDS 35.0%
!! TTTTGAAGGTGATTGGGATA+AGG + chr5.3:24059600-24059619 MS.gene45097:CDS 35.0%
AAAGAGGAGAAGATAGTTGG+AGG + chr5.3:24059655-24059674 MS.gene45097:CDS 40.0%
AACACCATGCACTATAAACG+GGG - chr5.3:24059269-24059288 None:intergenic 40.0%
AAGATAGTTGGAGGAATGGA+TGG + chr5.3:24059664-24059683 MS.gene45097:CDS 40.0%
AGTGAGAGATGCATCACAAA+TGG + chr5.3:24058977-24058996 MS.gene45097:CDS 40.0%
CAACACCATGCACTATAAAC+GGG - chr5.3:24059270-24059289 None:intergenic 40.0%
CAATCACCTTCAAAATGAGC+AGG - chr5.3:24059595-24059614 None:intergenic 40.0%
CTTGGTAGATTACACTCACT+TGG - chr5.3:24059040-24059059 None:intergenic 40.0%
GAATGGATGGTGAGATTAGA+AGG + chr5.3:24059677-24059696 MS.gene45097:CDS 40.0%
GGATCTTGTTAATGAGAGGT+GGG + chr5.3:24059330-24059349 MS.gene45097:CDS 40.0%
GTCCTCAAAGCCTTTCTTAA+AGG - chr5.3:24059499-24059518 None:intergenic 40.0%
TCTTGCCATCTTGGTAAACA+AGG - chr5.3:24059186-24059205 None:intergenic 40.0%
TGGATCTTGTTAATGAGAGG+TGG + chr5.3:24059329-24059348 MS.gene45097:CDS 40.0%
TGTAGAGATGATGAAGAAGC+GGG + chr5.3:24059924-24059943 MS.gene45097:CDS 40.0%
TTCCAAGTATCTATAGGTCC+TGG - chr5.3:24059895-24059914 None:intergenic 40.0%
TTGGCATTATTGAGACCAGA+TGG + chr5.3:24059784-24059803 MS.gene45097:CDS 40.0%
TTGTTGGAGATTCTTTGGCT+AGG + chr5.3:24059110-24059129 MS.gene45097:CDS 40.0%
TTGTTGTATCAACTGGCCAT+TGG + chr5.3:24059380-24059399 MS.gene45097:CDS 40.0%
! GGTGTTGAAGGATCAAATGA+AGG + chr5.3:24059283-24059302 MS.gene45097:CDS 40.0%
!! CTGCTCATTTTGAAGGTGAT+TGG + chr5.3:24059593-24059612 MS.gene45097:CDS 40.0%
!! GTGCCACTTACGGAATTTAT+TGG - chr5.3:24059209-24059228 None:intergenic 40.0%
CGGGGACCAATACAAAGAAA+AGG - chr5.3:24059251-24059270 None:intergenic 45.0%
CTCTTTGATTGTGCCACATG+TGG - chr5.3:24058957-24058976 None:intergenic 45.0%
GGAGAAGATAGTTGGAGGAA+TGG + chr5.3:24059660-24059679 MS.gene45097:CDS 45.0%
TAAGGACCTGAATGACCATC+TGG - chr5.3:24059802-24059821 None:intergenic 45.0%
TGCCAGGACCTATAGATACT+TGG + chr5.3:24059890-24059909 MS.gene45097:CDS 45.0%
TGTTAATGAGAGGTGGGCAA+AGG + chr5.3:24059336-24059355 MS.gene45097:CDS 45.0%
TTGAGACCAGATGGTCATTC+AGG + chr5.3:24059793-24059812 MS.gene45097:CDS 45.0%
!! GAGAAGGAAAGTGCCACTTA+CGG - chr5.3:24059219-24059238 None:intergenic 45.0%
ATGTCACCACTCACCACATG+TGG + chr5.3:24058941-24058960 MS.gene45097:CDS 50.0%
ATTGTGCCACATGTGGTGAG+TGG - chr5.3:24058950-24058969 None:intergenic 50.0%
GAAGGTGATTGGGATAAGGC+TGG + chr5.3:24059604-24059623 MS.gene45097:CDS 50.0%
TGGTCCCCGTTTATAGTGCA+TGG + chr5.3:24059262-24059281 MS.gene45097:CDS 50.0%
! TGTGTTCATTGGTGCTTGCC+AGG + chr5.3:24059874-24059893 MS.gene45097:CDS 50.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 24058941 24059951 24058941 ID=MS.gene45097
chr5.3 mRNA 24058941 24059951 24058941 ID=MS.gene45097.t1;Parent=MS.gene45097
chr5.3 exon 24058941 24059951 24058941 ID=MS.gene45097.t1.exon1;Parent=MS.gene45097.t1
chr5.3 CDS 24058941 24059951 24058941 ID=cds.MS.gene45097.t1;Parent=MS.gene45097.t1
Gene Sequence

>MS.gene45097

ATGTCACCACTCACCACATGTGGCACAATCAAAGAGAGTGAGAGATGCATCACAAATGGTAGACCTGATTTAGGTTATCTTTATTGGAGATGGAAGCCAAGTGAGTGTAATCTACCAAGATTTGAACCAAACACTTTCCTCAAACTCATTAAGAACAAACATATAGCTTTTGTTGGAGATTCTTTGGCTAGGAACCAATTAGAGTCACTTCTTTGCATGTTATCGACTACTTCAACACTTAACCTTGTTTACCAAGATGGCAAGACCAATAAATTCCGTAAGTGGCACTTTCCTTCTCATAATGATACCTTTTCTTTGTATTGGTCCCCGTTTATAGTGCATGGTGTTGAAGGATCAAATGAAGGGAATTATTATAATACGATGTTTTTGGATCTTGTTAATGAGAGGTGGGCAAAGGATATTGATCAAATGGACATGATTGTTGTATCAACTGGCCATTGGTTTTTGCTTCCATCAATTTACTATGAGAGTGATTTAGTTCTTGGTAGCTTGAATTGTCCTGAGTTTAATCATACTCAAATTGATTTTTTTGTTCCTTTAAGAAAGGCTTTGAGGACTGCCCTTAATAGAATAATTGAGAGGAAAGTTGCTAAAGGAAATGGAATTGATGTGATTGTGAAAACATTTTCACCTGCTCATTTTGAAGGTGATTGGGATAAGGCTGGTACTTGTTCAAAGACTAAGCCTTATAGAAAAGAGGAGAAGATAGTTGGAGGAATGGATGGTGAGATTAGAAGGATTGAGATAGAAGAAGTGGAAAGTGCCAAGACAAAAGCTAATAAATTTGAAGGTATTAGATTTGAGGTGTTGGATGTAACTAAATTGGCATTATTGAGACCAGATGGTCATTCAGGTCCTTACATGAATCCTTTTCCATTTGCAAATGGAGTTCCAAAATATGTACAAAACGATTGTGTTCATTGGTGCTTGCCAGGACCTATAGATACTTGGAATGAGATTTTTGTAGAGATGATGAAGAAGCGGGAGTAA

Protein sequence

>MS.gene45097.t1

MSPLTTCGTIKESERCITNGRPDLGYLYWRWKPSECNLPRFEPNTFLKLIKNKHIAFVGDSLARNQLESLLCMLSTTSTLNLVYQDGKTNKFRKWHFPSHNDTFSLYWSPFIVHGVEGSNEGNYYNTMFLDLVNERWAKDIDQMDMIVVSTGHWFLLPSIYYESDLVLGSLNCPEFNHTQIDFFVPLRKALRTALNRIIERKVAKGNGIDVIVKTFSPAHFEGDWDKAGTCSKTKPYRKEEKIVGGMDGEIRRIEIEEVESAKTKANKFEGIRFEVLDVTKLALLRPDGHSGPYMNPFPFANGVPKYVQNDCVHWCLPGPIDTWNEIFVEMMKKRE