Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45097.t1 | XP_003613310.1 | 95.5 | 333 | 15 | 0 | 4 | 336 | 103 | 435 | 5.60E-193 | 683.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45097.t1 | O04523 | 54.5 | 332 | 133 | 6 | 5 | 334 | 98 | 413 | 6.0e-111 | 402.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45097.t1 | G7K2U2 | 95.5 | 333 | 15 | 0 | 4 | 336 | 103 | 435 | 4.0e-193 | 683.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051265 | MS.gene45097 | 0.802715 | 4.92E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45097.t1 | MTR_5g035150 | 95.495 | 333 | 15 | 0 | 4 | 336 | 103 | 435 | 0.0 | 666 |
MS.gene45097.t1 | MTR_5g035080 | 72.372 | 333 | 85 | 3 | 5 | 334 | 94 | 422 | 1.62e-175 | 494 |
MS.gene45097.t1 | MTR_5g035070 | 70.783 | 332 | 97 | 0 | 5 | 336 | 106 | 437 | 8.68e-173 | 487 |
MS.gene45097.t1 | MTR_5g035090 | 69.277 | 332 | 100 | 2 | 5 | 336 | 102 | 431 | 7.71e-171 | 482 |
MS.gene45097.t1 | MTR_3g109840 | 67.470 | 332 | 100 | 4 | 5 | 334 | 92 | 417 | 1.07e-165 | 468 |
MS.gene45097.t1 | MTR_8g104970 | 65.060 | 332 | 109 | 4 | 5 | 333 | 139 | 466 | 1.10e-160 | 457 |
MS.gene45097.t1 | MTR_7g033230 | 61.562 | 333 | 121 | 4 | 5 | 334 | 283 | 611 | 1.19e-148 | 432 |
MS.gene45097.t1 | MTR_7g033230 | 61.562 | 333 | 121 | 4 | 5 | 334 | 353 | 681 | 9.66e-148 | 432 |
MS.gene45097.t1 | MTR_5g035140 | 67.755 | 245 | 75 | 3 | 94 | 335 | 25 | 268 | 7.23e-125 | 359 |
MS.gene45097.t1 | MTR_8g027900 | 40.181 | 331 | 188 | 5 | 6 | 332 | 231 | 555 | 2.91e-87 | 273 |
MS.gene45097.t1 | MTR_8g099300 | 40.361 | 332 | 187 | 7 | 6 | 332 | 94 | 419 | 8.43e-86 | 265 |
MS.gene45097.t1 | MTR_6g016880 | 39.222 | 334 | 186 | 9 | 6 | 333 | 98 | 420 | 8.93e-85 | 263 |
MS.gene45097.t1 | MTR_7g019120 | 37.349 | 332 | 195 | 7 | 6 | 333 | 99 | 421 | 5.10e-79 | 248 |
MS.gene45097.t1 | MTR_6g007777 | 37.910 | 335 | 192 | 7 | 5 | 334 | 136 | 459 | 2.45e-76 | 242 |
MS.gene45097.t1 | MTR_6g016875 | 38.988 | 336 | 187 | 7 | 6 | 333 | 84 | 409 | 1.74e-75 | 238 |
MS.gene45097.t1 | MTR_2g016060 | 37.243 | 341 | 190 | 11 | 6 | 334 | 74 | 402 | 1.90e-73 | 233 |
MS.gene45097.t1 | MTR_1g076690 | 32.267 | 344 | 206 | 11 | 6 | 335 | 243 | 573 | 2.62e-55 | 189 |
MS.gene45097.t1 | MTR_6g061710 | 31.378 | 341 | 211 | 11 | 6 | 334 | 187 | 516 | 3.20e-52 | 180 |
MS.gene45097.t1 | MTR_7g094750 | 33.239 | 352 | 190 | 16 | 5 | 336 | 110 | 436 | 4.24e-47 | 165 |
MS.gene45097.t1 | MTR_2g022560 | 32.471 | 348 | 193 | 13 | 7 | 336 | 118 | 441 | 4.46e-41 | 149 |
MS.gene45097.t1 | MTR_0136s0010 | 32.370 | 346 | 194 | 14 | 6 | 334 | 190 | 512 | 1.55e-39 | 146 |
MS.gene45097.t1 | MTR_1g058380 | 29.310 | 348 | 202 | 13 | 6 | 335 | 77 | 398 | 4.53e-39 | 143 |
MS.gene45097.t1 | MTR_7g093450 | 31.988 | 347 | 197 | 13 | 6 | 336 | 268 | 591 | 3.29e-38 | 143 |
MS.gene45097.t1 | MTR_5g059400 | 30.499 | 341 | 193 | 14 | 6 | 327 | 195 | 510 | 2.09e-37 | 140 |
MS.gene45097.t1 | MTR_1g116130 | 30.499 | 341 | 193 | 14 | 6 | 327 | 195 | 510 | 2.09e-37 | 140 |
MS.gene45097.t1 | MTR_4g126950 | 30.636 | 346 | 193 | 15 | 6 | 332 | 129 | 446 | 7.89e-37 | 137 |
MS.gene45097.t1 | MTR_4g016940 | 29.855 | 345 | 200 | 14 | 6 | 332 | 107 | 427 | 8.30e-37 | 137 |
MS.gene45097.t1 | MTR_8g069790 | 28.736 | 348 | 207 | 13 | 3 | 333 | 195 | 518 | 1.24e-35 | 135 |
MS.gene45097.t1 | MTR_7g068920 | 30.946 | 349 | 191 | 13 | 6 | 332 | 101 | 421 | 1.43e-35 | 134 |
MS.gene45097.t1 | MTR_8g093530 | 28.940 | 349 | 186 | 12 | 5 | 332 | 109 | 416 | 1.04e-34 | 132 |
MS.gene45097.t1 | MTR_4g014440 | 29.882 | 338 | 203 | 15 | 7 | 328 | 84 | 403 | 2.72e-34 | 130 |
MS.gene45097.t1 | MTR_8g463790 | 27.479 | 353 | 199 | 14 | 6 | 334 | 92 | 411 | 3.99e-34 | 130 |
MS.gene45097.t1 | MTR_4g125060 | 28.746 | 327 | 197 | 10 | 16 | 328 | 163 | 467 | 7.89e-34 | 130 |
MS.gene45097.t1 | MTR_4g125060 | 28.746 | 327 | 197 | 10 | 16 | 328 | 231 | 535 | 1.08e-33 | 130 |
MS.gene45097.t1 | MTR_5g071350 | 29.377 | 337 | 207 | 11 | 5 | 328 | 77 | 395 | 1.15e-33 | 128 |
MS.gene45097.t1 | MTR_4g125060 | 28.746 | 327 | 197 | 10 | 16 | 328 | 202 | 506 | 1.17e-33 | 130 |
MS.gene45097.t1 | MTR_7g109550 | 30.058 | 346 | 196 | 14 | 6 | 336 | 157 | 471 | 1.84e-33 | 129 |
MS.gene45097.t1 | MTR_7g070060 | 29.240 | 342 | 200 | 16 | 7 | 328 | 86 | 405 | 5.74e-33 | 126 |
MS.gene45097.t1 | MTR_4g121560 | 28.024 | 339 | 212 | 12 | 6 | 332 | 135 | 453 | 6.27e-33 | 127 |
MS.gene45097.t1 | MTR_5g033800 | 28.045 | 353 | 202 | 14 | 4 | 334 | 163 | 485 | 1.67e-32 | 126 |
MS.gene45097.t1 | MTR_5g035120 | 73.611 | 72 | 19 | 0 | 5 | 76 | 94 | 165 | 6.92e-32 | 117 |
MS.gene45097.t1 | MTR_3g070900 | 27.059 | 340 | 208 | 12 | 7 | 328 | 128 | 445 | 1.88e-31 | 123 |
MS.gene45097.t1 | MTR_3g035830 | 28.698 | 338 | 184 | 11 | 5 | 328 | 50 | 344 | 3.56e-31 | 120 |
MS.gene45097.t1 | MTR_3g090120 | 29.429 | 350 | 192 | 12 | 5 | 336 | 152 | 464 | 3.93e-31 | 122 |
MS.gene45097.t1 | MTR_6g016240 | 29.226 | 349 | 202 | 14 | 6 | 332 | 91 | 416 | 6.71e-31 | 121 |
MS.gene45097.t1 | MTR_3g464570 | 29.483 | 329 | 209 | 12 | 5 | 328 | 62 | 372 | 7.64e-31 | 120 |
MS.gene45097.t1 | MTR_2g073510 | 29.042 | 334 | 202 | 12 | 3 | 332 | 51 | 353 | 3.12e-30 | 118 |
MS.gene45097.t1 | MTR_4g092830 | 28.771 | 358 | 191 | 14 | 6 | 332 | 68 | 392 | 1.23e-29 | 117 |
MS.gene45097.t1 | MTR_3g021060 | 29.141 | 326 | 198 | 11 | 5 | 328 | 65 | 359 | 1.89e-29 | 116 |
MS.gene45097.t1 | MTR_3g021090 | 29.032 | 341 | 179 | 14 | 5 | 328 | 50 | 344 | 1.12e-28 | 115 |
MS.gene45097.t1 | MTR_7g094750 | 33.761 | 234 | 124 | 10 | 5 | 222 | 110 | 328 | 1.35e-28 | 113 |
MS.gene45097.t1 | MTR_5g083260 | 27.139 | 339 | 211 | 11 | 5 | 328 | 103 | 420 | 1.61e-27 | 112 |
MS.gene45097.t1 | MTR_8g093870 | 25.152 | 330 | 213 | 8 | 16 | 332 | 164 | 472 | 1.79e-27 | 112 |
MS.gene45097.t1 | MTR_2g073500 | 28.440 | 327 | 196 | 10 | 7 | 332 | 56 | 345 | 2.65e-27 | 110 |
MS.gene45097.t1 | MTR_3g049330 | 29.429 | 333 | 190 | 14 | 5 | 328 | 50 | 346 | 2.26e-26 | 107 |
MS.gene45097.t1 | MTR_3g071650 | 27.219 | 338 | 208 | 11 | 7 | 328 | 111 | 426 | 2.55e-26 | 108 |
MS.gene45097.t1 | MTR_1g050448 | 26.888 | 331 | 209 | 11 | 7 | 332 | 73 | 375 | 7.27e-26 | 106 |
MS.gene45097.t1 | MTR_5g082880 | 26.706 | 337 | 216 | 15 | 7 | 328 | 187 | 507 | 8.95e-26 | 107 |
MS.gene45097.t1 | MTR_4g087730 | 28.793 | 323 | 197 | 10 | 5 | 325 | 64 | 355 | 1.44e-25 | 105 |
MS.gene45097.t1 | MTR_4g088030 | 27.864 | 323 | 200 | 10 | 5 | 325 | 52 | 343 | 5.87e-25 | 103 |
MS.gene45097.t1 | MTR_1g112210 | 25.862 | 348 | 188 | 14 | 5 | 328 | 77 | 378 | 6.88e-25 | 103 |
MS.gene45097.t1 | MTR_2g091175 | 28.440 | 327 | 198 | 12 | 5 | 328 | 69 | 362 | 9.51e-25 | 103 |
MS.gene45097.t1 | MTR_4g079700 | 28.788 | 330 | 201 | 12 | 5 | 332 | 66 | 363 | 1.73e-24 | 102 |
MS.gene45097.t1 | MTR_5g034810 | 27.729 | 339 | 182 | 14 | 7 | 328 | 56 | 348 | 8.75e-24 | 100 |
MS.gene45097.t1 | MTR_2g015720 | 27.647 | 340 | 193 | 13 | 5 | 332 | 60 | 358 | 2.02e-23 | 99.8 |
MS.gene45097.t1 | MTR_1g112210 | 26.100 | 341 | 183 | 13 | 5 | 328 | 77 | 365 | 3.84e-23 | 99.0 |
MS.gene45097.t1 | MTR_4g014430 | 25.862 | 348 | 209 | 14 | 5 | 332 | 128 | 446 | 5.89e-22 | 96.3 |
MS.gene45097.t1 | MTR_5g033800 | 29.870 | 231 | 135 | 9 | 4 | 221 | 163 | 379 | 3.15e-21 | 93.6 |
MS.gene45097.t1 | MTR_7g070060 | 27.653 | 311 | 183 | 16 | 38 | 328 | 15 | 303 | 3.37e-21 | 92.4 |
MS.gene45097.t1 | MTR_7g019140 | 51.429 | 70 | 34 | 0 | 6 | 75 | 99 | 168 | 4.14e-21 | 89.0 |
MS.gene45097.t1 | MTR_1g111010 | 25.758 | 330 | 198 | 10 | 7 | 332 | 55 | 341 | 8.38e-21 | 92.0 |
MS.gene45097.t1 | MTR_4g102570 | 38.095 | 126 | 66 | 3 | 103 | 222 | 3 | 122 | 7.59e-20 | 85.1 |
MS.gene45097.t1 | MTR_7g117160 | 36.129 | 155 | 64 | 6 | 177 | 331 | 70 | 189 | 3.35e-19 | 84.3 |
MS.gene45097.t1 | MTR_7g070060 | 29.464 | 224 | 134 | 9 | 7 | 220 | 86 | 295 | 1.15e-18 | 85.5 |
MS.gene45097.t1 | MTR_3g464570 | 27.972 | 286 | 179 | 13 | 50 | 328 | 3 | 268 | 1.65e-18 | 84.3 |
MS.gene45097.t1 | MTR_7g019130 | 29.365 | 126 | 80 | 4 | 107 | 227 | 4 | 125 | 8.22e-13 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45097.t1 | AT1G70230 | 55.422 | 332 | 130 | 7 | 5 | 334 | 98 | 413 | 3.43e-134 | 388 |
MS.gene45097.t1 | AT5G15890 | 40.841 | 333 | 178 | 8 | 5 | 333 | 206 | 523 | 7.55e-87 | 271 |
MS.gene45097.t1 | AT1G01430 | 40.237 | 338 | 190 | 7 | 6 | 336 | 119 | 451 | 1.88e-85 | 265 |
MS.gene45097.t1 | AT4G01080 | 40.120 | 334 | 187 | 7 | 6 | 336 | 111 | 434 | 8.99e-84 | 260 |
MS.gene45097.t1 | AT3G02440 | 38.416 | 341 | 187 | 7 | 5 | 336 | 146 | 472 | 1.28e-83 | 261 |
MS.gene45097.t1 | AT3G02440 | 38.416 | 341 | 187 | 7 | 5 | 336 | 154 | 480 | 1.32e-83 | 261 |
MS.gene45097.t1 | AT4G23790 | 40.240 | 333 | 189 | 7 | 6 | 332 | 99 | 427 | 1.06e-81 | 254 |
MS.gene45097.t1 | AT3G28150 | 39.521 | 334 | 188 | 8 | 5 | 334 | 89 | 412 | 2.94e-81 | 253 |
MS.gene45097.t1 | AT4G11090 | 40.240 | 333 | 187 | 9 | 6 | 332 | 99 | 425 | 4.29e-78 | 245 |
MS.gene45097.t1 | AT5G15900 | 36.982 | 338 | 197 | 9 | 5 | 336 | 86 | 413 | 7.04e-74 | 234 |
MS.gene45097.t1 | AT5G15900 | 36.982 | 338 | 197 | 9 | 5 | 336 | 105 | 432 | 1.37e-73 | 234 |
MS.gene45097.t1 | AT4G25360 | 33.430 | 344 | 202 | 10 | 6 | 334 | 195 | 526 | 2.63e-58 | 197 |
MS.gene45097.t1 | AT4G25360 | 33.430 | 344 | 202 | 10 | 6 | 334 | 195 | 526 | 2.63e-58 | 197 |
MS.gene45097.t1 | AT5G51640 | 34.366 | 355 | 198 | 14 | 1 | 334 | 150 | 490 | 2.32e-55 | 188 |
MS.gene45097.t1 | AT5G19160 | 34.795 | 342 | 198 | 11 | 7 | 336 | 120 | 448 | 4.84e-48 | 168 |
MS.gene45097.t1 | AT3G06080 | 32.164 | 342 | 204 | 11 | 7 | 336 | 124 | 449 | 9.22e-45 | 159 |
MS.gene45097.t1 | AT3G11570 | 31.124 | 347 | 188 | 14 | 7 | 332 | 103 | 419 | 3.85e-41 | 149 |
MS.gene45097.t1 | AT5G64020 | 31.268 | 339 | 193 | 13 | 16 | 332 | 88 | 408 | 4.51e-41 | 148 |
MS.gene45097.t1 | AT3G12060 | 30.548 | 347 | 199 | 15 | 6 | 334 | 216 | 538 | 3.99e-40 | 148 |
MS.gene45097.t1 | AT2G14530 | 31.909 | 351 | 190 | 16 | 5 | 332 | 82 | 406 | 4.25e-40 | 145 |
MS.gene45097.t1 | AT5G20590 | 31.157 | 337 | 195 | 12 | 6 | 328 | 162 | 475 | 1.07e-37 | 140 |
MS.gene45097.t1 | AT5G06700 | 30.702 | 342 | 205 | 14 | 6 | 334 | 275 | 597 | 5.09e-37 | 140 |
MS.gene45097.t1 | AT1G48880 | 31.977 | 344 | 186 | 15 | 5 | 335 | 134 | 442 | 2.17e-35 | 134 |
MS.gene45097.t1 | AT5G58600 | 29.912 | 341 | 204 | 11 | 3 | 332 | 84 | 400 | 3.36e-35 | 132 |
MS.gene45097.t1 | AT5G06230 | 29.885 | 348 | 191 | 15 | 7 | 332 | 48 | 364 | 4.88e-35 | 131 |
MS.gene45097.t1 | AT5G06230 | 29.885 | 348 | 191 | 15 | 7 | 332 | 89 | 405 | 1.10e-34 | 131 |
MS.gene45097.t1 | AT1G60790 | 27.586 | 348 | 213 | 13 | 3 | 333 | 209 | 534 | 6.61e-33 | 128 |
MS.gene45097.t1 | AT5G49340 | 28.280 | 343 | 207 | 12 | 7 | 332 | 121 | 441 | 8.46e-33 | 127 |
MS.gene45097.t1 | AT3G62390 | 27.566 | 341 | 215 | 12 | 5 | 335 | 157 | 475 | 1.27e-31 | 124 |
MS.gene45097.t1 | AT5G01360 | 27.273 | 341 | 215 | 12 | 6 | 332 | 57 | 378 | 1.65e-31 | 122 |
MS.gene45097.t1 | AT5G64470 | 27.003 | 337 | 218 | 10 | 6 | 332 | 76 | 394 | 1.70e-31 | 122 |
MS.gene45097.t1 | AT2G30010 | 27.809 | 356 | 187 | 10 | 8 | 332 | 80 | 396 | 2.67e-31 | 122 |
MS.gene45097.t1 | AT2G37720 | 28.657 | 335 | 195 | 11 | 16 | 332 | 174 | 482 | 4.03e-31 | 122 |
MS.gene45097.t1 | AT2G30010 | 28.691 | 359 | 180 | 13 | 8 | 332 | 123 | 439 | 4.20e-31 | 122 |
MS.gene45097.t1 | AT5G01360 | 27.273 | 341 | 215 | 12 | 6 | 332 | 113 | 434 | 6.05e-31 | 121 |
MS.gene45097.t1 | AT2G38320 | 27.463 | 335 | 215 | 12 | 7 | 328 | 81 | 400 | 8.66e-31 | 120 |
MS.gene45097.t1 | AT2G38320 | 27.914 | 326 | 207 | 12 | 16 | 328 | 7 | 317 | 1.02e-30 | 119 |
MS.gene45097.t1 | AT5G20680 | 28.402 | 338 | 192 | 10 | 16 | 332 | 149 | 457 | 1.03e-30 | 121 |
MS.gene45097.t1 | AT5G20680 | 28.402 | 338 | 192 | 10 | 16 | 332 | 225 | 533 | 2.17e-30 | 121 |
MS.gene45097.t1 | AT5G20680 | 28.402 | 338 | 192 | 10 | 16 | 332 | 243 | 551 | 2.67e-30 | 121 |
MS.gene45097.t1 | AT5G20680 | 28.402 | 338 | 192 | 10 | 16 | 332 | 243 | 551 | 2.67e-30 | 121 |
MS.gene45097.t1 | AT5G20680 | 28.402 | 338 | 192 | 10 | 16 | 332 | 243 | 551 | 2.67e-30 | 121 |
MS.gene45097.t1 | AT5G20680 | 28.402 | 338 | 192 | 10 | 16 | 332 | 243 | 551 | 2.67e-30 | 121 |
MS.gene45097.t1 | AT2G30900 | 28.049 | 328 | 200 | 12 | 7 | 328 | 64 | 361 | 8.34e-30 | 117 |
MS.gene45097.t1 | AT3G14850 | 31.138 | 334 | 192 | 10 | 5 | 332 | 53 | 354 | 9.91e-30 | 117 |
MS.gene45097.t1 | AT5G64470 | 26.706 | 337 | 225 | 10 | 6 | 332 | 76 | 400 | 1.16e-29 | 117 |
MS.gene45097.t1 | AT5G19160 | 36.726 | 226 | 122 | 8 | 7 | 221 | 120 | 335 | 1.33e-29 | 116 |
MS.gene45097.t1 | AT1G73140 | 28.116 | 345 | 195 | 14 | 6 | 328 | 88 | 401 | 1.44e-29 | 117 |
MS.gene45097.t1 | AT2G40160 | 25.843 | 356 | 211 | 14 | 7 | 336 | 99 | 427 | 2.17e-29 | 117 |
MS.gene45097.t1 | AT3G11030 | 26.923 | 338 | 214 | 11 | 5 | 328 | 126 | 444 | 5.05e-29 | 116 |
MS.gene45097.t1 | AT3G55990 | 26.087 | 345 | 219 | 11 | 7 | 335 | 162 | 486 | 8.49e-29 | 116 |
MS.gene45097.t1 | AT2G40160 | 26.801 | 347 | 203 | 15 | 7 | 328 | 99 | 419 | 1.16e-28 | 115 |
MS.gene45097.t1 | AT2G31110 | 27.273 | 330 | 205 | 12 | 6 | 332 | 65 | 362 | 1.78e-27 | 110 |
MS.gene45097.t1 | AT2G40320 | 26.100 | 341 | 208 | 12 | 7 | 328 | 103 | 418 | 1.64e-26 | 109 |
MS.gene45097.t1 | AT2G42570 | 29.586 | 338 | 185 | 17 | 7 | 332 | 68 | 364 | 2.08e-26 | 108 |
MS.gene45097.t1 | AT1G29050 | 28.701 | 331 | 201 | 14 | 5 | 332 | 80 | 378 | 6.58e-26 | 107 |
MS.gene45097.t1 | AT2G40150 | 25.852 | 352 | 218 | 16 | 7 | 335 | 93 | 424 | 7.67e-26 | 107 |
MS.gene45097.t1 | AT3G06080 | 31.556 | 225 | 135 | 6 | 7 | 221 | 124 | 339 | 1.77e-25 | 105 |
MS.gene45097.t1 | AT2G34070 | 26.807 | 332 | 207 | 12 | 5 | 332 | 84 | 383 | 2.43e-25 | 105 |
MS.gene45097.t1 | AT3G54260 | 25.444 | 338 | 210 | 12 | 5 | 332 | 69 | 374 | 1.14e-24 | 103 |
MS.gene45097.t1 | AT5G20590 | 31.878 | 229 | 130 | 9 | 6 | 221 | 162 | 377 | 8.33e-24 | 100 |
MS.gene45097.t1 | AT1G78710 | 28.972 | 321 | 193 | 13 | 16 | 332 | 67 | 356 | 2.93e-23 | 99.4 |
MS.gene45097.t1 | AT5G58600 | 31.982 | 222 | 131 | 8 | 3 | 220 | 84 | 289 | 5.61e-21 | 91.7 |
MS.gene45097.t1 | AT5G06230 | 30.769 | 234 | 127 | 10 | 7 | 222 | 89 | 305 | 1.65e-20 | 90.9 |
MS.gene45097.t1 | AT5G01620 | 24.425 | 348 | 214 | 13 | 5 | 332 | 139 | 457 | 2.30e-20 | 92.0 |
MS.gene45097.t1 | AT5G01620 | 24.425 | 348 | 214 | 13 | 5 | 332 | 131 | 449 | 2.45e-20 | 91.7 |
MS.gene45097.t1 | AT5G01620 | 24.425 | 348 | 214 | 13 | 5 | 332 | 131 | 449 | 2.45e-20 | 91.7 |
MS.gene45097.t1 | AT3G62390 | 27.111 | 225 | 151 | 5 | 5 | 223 | 157 | 374 | 5.25e-20 | 90.5 |
MS.gene45097.t1 | AT2G40160 | 35.965 | 114 | 62 | 2 | 7 | 115 | 99 | 206 | 9.57e-19 | 85.9 |
MS.gene45097.t1 | AT2G30900 | 33.113 | 151 | 94 | 3 | 7 | 156 | 64 | 208 | 1.27e-17 | 82.0 |
MS.gene45097.t1 | AT5G64470 | 25.911 | 247 | 166 | 7 | 6 | 242 | 76 | 315 | 7.33e-17 | 80.5 |
MS.gene45097.t1 | AT5G64470 | 26.016 | 246 | 165 | 7 | 6 | 241 | 76 | 314 | 7.65e-17 | 80.5 |
MS.gene45097.t1 | AT2G31110 | 31.333 | 150 | 96 | 3 | 6 | 155 | 65 | 207 | 5.03e-16 | 77.4 |
MS.gene45097.t1 | AT3G14850 | 28.369 | 282 | 164 | 10 | 57 | 332 | 2 | 251 | 1.12e-14 | 73.2 |
MS.gene45097.t1 | AT1G78710 | 31.429 | 140 | 90 | 2 | 16 | 155 | 60 | 193 | 6.57e-13 | 68.9 |
Find 71 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTCTCAATTATTCTATTA+AGG | 0.091257 | 5.3:-24059522 | None:intergenic |
CTGATTTAGGTTATCTTTAT+TGG | 0.135262 | 5.3:+24059005 | MS.gene45097:CDS |
GTCCTCAAAGCCTTTCTTAA+AGG | 0.191336 | 5.3:-24059496 | None:intergenic |
TATGAGAGTGATTTAGTTCT+TGG | 0.213205 | 5.3:+24059424 | MS.gene45097:CDS |
GTGCCACTTACGGAATTTAT+TGG | 0.276669 | 5.3:-24059206 | None:intergenic |
TGCAAAGAAGTGACTCTAAT+TGG | 0.285207 | 5.3:-24059135 | None:intergenic |
ACAAATGGTAGACCTGATTT+AGG | 0.287971 | 5.3:+24058992 | MS.gene45097:CDS |
TTGAGACCAGATGGTCATTC+AGG | 0.301177 | 5.3:+24059793 | MS.gene45097:CDS |
CCTCTCAATTATTCTATTAA+GGG | 0.325837 | 5.3:-24059521 | None:intergenic |
ATTTATTGGTCTTGCCATCT+TGG | 0.346199 | 5.3:-24059192 | None:intergenic |
AAAGTGTTTGGTTCAAATCT+TGG | 0.349855 | 5.3:-24059055 | None:intergenic |
GAATGGATGGTGAGATTAGA+AGG | 0.357080 | 5.3:+24059677 | MS.gene45097:CDS |
TCACTCTCATAGTAAATTGA+TGG | 0.370160 | 5.3:-24059412 | None:intergenic |
AGGAAAGTTGCTAAAGGAAA+TGG | 0.381708 | 5.3:+24059541 | MS.gene45097:CDS |
TCAACACCATGCACTATAAA+CGG | 0.382294 | 5.3:-24059268 | None:intergenic |
GGTGTTGGATGTAACTAAAT+TGG | 0.388499 | 5.3:+24059765 | MS.gene45097:CDS |
GGAGAAGATAGTTGGAGGAA+TGG | 0.393313 | 5.3:+24059660 | MS.gene45097:CDS |
CAACACCATGCACTATAAAC+GGG | 0.408667 | 5.3:-24059267 | None:intergenic |
GTTTGTTCTTAATGAGTTTG+AGG | 0.410280 | 5.3:-24059078 | None:intergenic |
AGAAAAGAGGAGAAGATAGT+TGG | 0.414140 | 5.3:+24059652 | MS.gene45097:CDS |
TTCCTTTAAGAAAGGCTTTG+AGG | 0.416940 | 5.3:+24059494 | MS.gene45097:CDS |
GGCAAAGGATATTGATCAAA+TGG | 0.424223 | 5.3:+24059351 | MS.gene45097:CDS |
CTTAACCTTGTTTACCAAGA+TGG | 0.429398 | 5.3:+24059178 | MS.gene45097:CDS |
TTTGGAACTCCATTTGCAAA+TGG | 0.431908 | 5.3:-24059835 | None:intergenic |
ACTCCATTTGCAAATGGAAA+AGG | 0.436668 | 5.3:-24059829 | None:intergenic |
ATTTGAAGGTATTAGATTTG+AGG | 0.443567 | 5.3:+24059744 | MS.gene45097:CDS |
CAATAAAGATAACCTAAATC+AGG | 0.445212 | 5.3:-24059004 | None:intergenic |
TGTAGAGATGATGAAGAAGC+GGG | 0.445533 | 5.3:+24059924 | MS.gene45097:CDS |
ACAAAAGCTAATAAATTTGA+AGG | 0.447815 | 5.3:+24059730 | MS.gene45097:CDS |
CTTGGTAGATTACACTCACT+TGG | 0.451639 | 5.3:-24059037 | None:intergenic |
TGTGTTCATTGGTGCTTGCC+AGG | 0.456446 | 5.3:+24059874 | MS.gene45097:CDS |
TACAAAACGATTGTGTTCAT+TGG | 0.458956 | 5.3:+24059863 | MS.gene45097:CDS |
TTTATAGTGCATGGTGTTGA+AGG | 0.460100 | 5.3:+24059271 | MS.gene45097:CDS |
TAGGTTATCTTTATTGGAGA+TGG | 0.460710 | 5.3:+24059011 | MS.gene45097:CDS |
ATGAGTTTGAGGAAAGTGTT+TGG | 0.469541 | 5.3:-24059067 | None:intergenic |
AAGGATTGAGATAGAAGAAG+TGG | 0.473823 | 5.3:+24059696 | MS.gene45097:CDS |
GACTAAGCCTTATAGAAAAG+AGG | 0.487707 | 5.3:+24059639 | MS.gene45097:CDS |
TAAGGACCTGAATGACCATC+TGG | 0.495026 | 5.3:-24059799 | None:intergenic |
AATGGAAAAGGATTCATGTA+AGG | 0.496598 | 5.3:-24059817 | None:intergenic |
AGTGAGAGATGCATCACAAA+TGG | 0.499969 | 5.3:+24058977 | MS.gene45097:CDS |
TGCCAGGACCTATAGATACT+TGG | 0.502047 | 5.3:+24059890 | MS.gene45097:CDS |
GACATGATTGTTGTATCAAC+TGG | 0.507795 | 5.3:+24059373 | MS.gene45097:CDS |
TTGTTGGAGATTCTTTGGCT+AGG | 0.514286 | 5.3:+24059110 | MS.gene45097:CDS |
TGGTCCCCGTTTATAGTGCA+TGG | 0.514963 | 5.3:+24059262 | MS.gene45097:CDS |
AAAGAGGAGAAGATAGTTGG+AGG | 0.516930 | 5.3:+24059655 | MS.gene45097:CDS |
CTCTTTGATTGTGCCACATG+TGG | 0.519016 | 5.3:-24058954 | None:intergenic |
CGGGGACCAATACAAAGAAA+AGG | 0.521289 | 5.3:-24059248 | None:intergenic |
GAAGGTGATTGGGATAAGGC+TGG | 0.521359 | 5.3:+24059604 | MS.gene45097:CDS |
ATCTCATTCCAAGTATCTAT+AGG | 0.524335 | 5.3:-24059898 | None:intergenic |
TGGATCTTGTTAATGAGAGG+TGG | 0.535305 | 5.3:+24059329 | MS.gene45097:CDS |
AGGTATTAGATTTGAGGTGT+TGG | 0.536677 | 5.3:+24059750 | MS.gene45097:CDS |
TTCCAAGTATCTATAGGTCC+TGG | 0.536833 | 5.3:-24059892 | None:intergenic |
AGACCAATAAATTCCGTAAG+TGG | 0.539340 | 5.3:+24059203 | MS.gene45097:CDS |
AAGATAGTTGGAGGAATGGA+TGG | 0.542345 | 5.3:+24059664 | MS.gene45097:CDS |
GGATCTTGTTAATGAGAGGT+GGG | 0.544161 | 5.3:+24059330 | MS.gene45097:CDS |
GAGAAGGAAAGTGCCACTTA+CGG | 0.549343 | 5.3:-24059216 | None:intergenic |
TTGTAGAGATGATGAAGAAG+CGG | 0.549572 | 5.3:+24059923 | MS.gene45097:CDS |
CAATCACCTTCAAAATGAGC+AGG | 0.550833 | 5.3:-24059592 | None:intergenic |
GGTGTTGAAGGATCAAATGA+AGG | 0.557511 | 5.3:+24059283 | MS.gene45097:CDS |
ATTGAGAGGAAAGTTGCTAA+AGG | 0.566358 | 5.3:+24059535 | MS.gene45097:CDS |
TCTTGCCATCTTGGTAAACA+AGG | 0.568916 | 5.3:-24059183 | None:intergenic |
TTGGCATTATTGAGACCAGA+TGG | 0.590154 | 5.3:+24059784 | MS.gene45097:CDS |
TGTTAATGAGAGGTGGGCAA+AGG | 0.594392 | 5.3:+24059336 | MS.gene45097:CDS |
GAAAAGGTATCATTATGAGA+AGG | 0.599288 | 5.3:-24059232 | None:intergenic |
TTGTTGTATCAACTGGCCAT+TGG | 0.619734 | 5.3:+24059380 | MS.gene45097:CDS |
ATTGTGCCACATGTGGTGAG+TGG | 0.619798 | 5.3:-24058947 | None:intergenic |
GTGTTGAAGGATCAAATGAA+GGG | 0.628849 | 5.3:+24059284 | MS.gene45097:CDS |
ATTTGAGTATGATTAAACTC+AGG | 0.636695 | 5.3:-24059460 | None:intergenic |
ATGTCACCACTCACCACATG+TGG | 0.638779 | 5.3:+24058941 | MS.gene45097:CDS |
CCCTTAATAGAATAATTGAG+AGG | 0.661863 | 5.3:+24059521 | MS.gene45097:CDS |
AACACCATGCACTATAAACG+GGG | 0.681835 | 5.3:-24059266 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTATAATACGATGTTTT+TGG | + | chr5.3:24059309-24059328 | MS.gene45097:CDS | 15.0% |
!! | ACAAAAGCTAATAAATTTGA+AGG | + | chr5.3:24059730-24059749 | MS.gene45097:CDS | 20.0% |
!!! | AAATTTATTAGCTTTTGTCT+TGG | - | chr5.3:24059728-24059747 | None:intergenic | 20.0% |
!!! | TTTTTTTGTTCCTTTAAGAA+AGG | + | chr5.3:24059486-24059505 | MS.gene45097:CDS | 20.0% |
! | ATTTGAGTATGATTAAACTC+AGG | - | chr5.3:24059463-24059482 | None:intergenic | 25.0% |
! | CAATAAAGATAACCTAAATC+AGG | - | chr5.3:24059007-24059026 | None:intergenic | 25.0% |
! | CCTCTCAATTATTCTATTAA+GGG | - | chr5.3:24059524-24059543 | None:intergenic | 25.0% |
! | TCCTCTCAATTATTCTATTA+AGG | - | chr5.3:24059525-24059544 | None:intergenic | 25.0% |
!! | AACAAACATATAGCTTTTGT+TGG | + | chr5.3:24059094-24059113 | MS.gene45097:CDS | 25.0% |
!! | ATGATACCTTTTCTTTGTAT+TGG | + | chr5.3:24059242-24059261 | MS.gene45097:CDS | 25.0% |
!! | CAATCGTTTTGTACATATTT+TGG | - | chr5.3:24059856-24059875 | None:intergenic | 25.0% |
!! | CTGATTTAGGTTATCTTTAT+TGG | + | chr5.3:24059005-24059024 | MS.gene45097:CDS | 25.0% |
!!! | ATTTGAAGGTATTAGATTTG+AGG | + | chr5.3:24059744-24059763 | MS.gene45097:CDS | 25.0% |
AATGGAAAAGGATTCATGTA+AGG | - | chr5.3:24059820-24059839 | None:intergenic | 30.0% | |
ATCTCATTCCAAGTATCTAT+AGG | - | chr5.3:24059901-24059920 | None:intergenic | 30.0% | |
CCCTTAATAGAATAATTGAG+AGG | + | chr5.3:24059521-24059540 | MS.gene45097:CDS | 30.0% | |
GTTTGTTCTTAATGAGTTTG+AGG | - | chr5.3:24059081-24059100 | None:intergenic | 30.0% | |
TACAAAACGATTGTGTTCAT+TGG | + | chr5.3:24059863-24059882 | MS.gene45097:CDS | 30.0% | |
TAGGTTATCTTTATTGGAGA+TGG | + | chr5.3:24059011-24059030 | MS.gene45097:CDS | 30.0% | |
TCACTCTCATAGTAAATTGA+TGG | - | chr5.3:24059415-24059434 | None:intergenic | 30.0% | |
! | AAAGTGTTTGGTTCAAATCT+TGG | - | chr5.3:24059058-24059077 | None:intergenic | 30.0% |
! | AATCCTTTTCCATTTGCAAA+TGG | + | chr5.3:24059826-24059845 | MS.gene45097:CDS | 30.0% |
! | ATCTTCTCCTCTTTTCTATA+AGG | - | chr5.3:24059649-24059668 | None:intergenic | 30.0% |
! | TTTTGGATCTTGTTAATGAG+AGG | + | chr5.3:24059326-24059345 | MS.gene45097:CDS | 30.0% |
!! | GAAAAGGTATCATTATGAGA+AGG | - | chr5.3:24059235-24059254 | None:intergenic | 30.0% |
!! | TATGAGAGTGATTTAGTTCT+TGG | + | chr5.3:24059424-24059443 | MS.gene45097:CDS | 30.0% |
AAGGATTGAGATAGAAGAAG+TGG | + | chr5.3:24059696-24059715 | MS.gene45097:CDS | 35.0% | |
ACAAATGGTAGACCTGATTT+AGG | + | chr5.3:24058992-24059011 | MS.gene45097:CDS | 35.0% | |
ACTCCATTTGCAAATGGAAA+AGG | - | chr5.3:24059832-24059851 | None:intergenic | 35.0% | |
AGAAAAGAGGAGAAGATAGT+TGG | + | chr5.3:24059652-24059671 | MS.gene45097:CDS | 35.0% | |
AGACCAATAAATTCCGTAAG+TGG | + | chr5.3:24059203-24059222 | MS.gene45097:CDS | 35.0% | |
AGGAAAGTTGCTAAAGGAAA+TGG | + | chr5.3:24059541-24059560 | MS.gene45097:CDS | 35.0% | |
ATTGAGAGGAAAGTTGCTAA+AGG | + | chr5.3:24059535-24059554 | MS.gene45097:CDS | 35.0% | |
GACATGATTGTTGTATCAAC+TGG | + | chr5.3:24059373-24059392 | MS.gene45097:CDS | 35.0% | |
GGCAAAGGATATTGATCAAA+TGG | + | chr5.3:24059351-24059370 | MS.gene45097:CDS | 35.0% | |
GTGTTGAAGGATCAAATGAA+GGG | + | chr5.3:24059284-24059303 | MS.gene45097:CDS | 35.0% | |
TCAACACCATGCACTATAAA+CGG | - | chr5.3:24059271-24059290 | None:intergenic | 35.0% | |
TGCAAAGAAGTGACTCTAAT+TGG | - | chr5.3:24059138-24059157 | None:intergenic | 35.0% | |
TTGATGGAAGCAAAAACCAA+TGG | - | chr5.3:24059399-24059418 | None:intergenic | 35.0% | |
TTGTAGAGATGATGAAGAAG+CGG | + | chr5.3:24059923-24059942 | MS.gene45097:CDS | 35.0% | |
! | AGCTTTTGTTGGAGATTCTT+TGG | + | chr5.3:24059105-24059124 | MS.gene45097:CDS | 35.0% |
! | AGGTATTAGATTTGAGGTGT+TGG | + | chr5.3:24059750-24059769 | MS.gene45097:CDS | 35.0% |
! | CTTAACCTTGTTTACCAAGA+TGG | + | chr5.3:24059178-24059197 | MS.gene45097:CDS | 35.0% |
! | GACTAAGCCTTATAGAAAAG+AGG | + | chr5.3:24059639-24059658 | MS.gene45097:CDS | 35.0% |
! | GGTGTTGGATGTAACTAAAT+TGG | + | chr5.3:24059765-24059784 | MS.gene45097:CDS | 35.0% |
! | TTCCTTTAAGAAAGGCTTTG+AGG | + | chr5.3:24059494-24059513 | MS.gene45097:CDS | 35.0% |
! | TTTATAGTGCATGGTGTTGA+AGG | + | chr5.3:24059271-24059290 | MS.gene45097:CDS | 35.0% |
! | TTTGGAACTCCATTTGCAAA+TGG | - | chr5.3:24059838-24059857 | None:intergenic | 35.0% |
! | TTTTCACCTGCTCATTTTGA+AGG | + | chr5.3:24059586-24059605 | MS.gene45097:CDS | 35.0% |
!! | ATGAGTTTGAGGAAAGTGTT+TGG | - | chr5.3:24059070-24059089 | None:intergenic | 35.0% |
!! | ATTTATTGGTCTTGCCATCT+TGG | - | chr5.3:24059195-24059214 | None:intergenic | 35.0% |
!! | TGCTCATTTTGAAGGTGATT+GGG | + | chr5.3:24059594-24059613 | MS.gene45097:CDS | 35.0% |
!! | TTTTGAAGGTGATTGGGATA+AGG | + | chr5.3:24059600-24059619 | MS.gene45097:CDS | 35.0% |
AAAGAGGAGAAGATAGTTGG+AGG | + | chr5.3:24059655-24059674 | MS.gene45097:CDS | 40.0% | |
AACACCATGCACTATAAACG+GGG | - | chr5.3:24059269-24059288 | None:intergenic | 40.0% | |
AAGATAGTTGGAGGAATGGA+TGG | + | chr5.3:24059664-24059683 | MS.gene45097:CDS | 40.0% | |
AGTGAGAGATGCATCACAAA+TGG | + | chr5.3:24058977-24058996 | MS.gene45097:CDS | 40.0% | |
CAACACCATGCACTATAAAC+GGG | - | chr5.3:24059270-24059289 | None:intergenic | 40.0% | |
CAATCACCTTCAAAATGAGC+AGG | - | chr5.3:24059595-24059614 | None:intergenic | 40.0% | |
CTTGGTAGATTACACTCACT+TGG | - | chr5.3:24059040-24059059 | None:intergenic | 40.0% | |
GAATGGATGGTGAGATTAGA+AGG | + | chr5.3:24059677-24059696 | MS.gene45097:CDS | 40.0% | |
GGATCTTGTTAATGAGAGGT+GGG | + | chr5.3:24059330-24059349 | MS.gene45097:CDS | 40.0% | |
GTCCTCAAAGCCTTTCTTAA+AGG | - | chr5.3:24059499-24059518 | None:intergenic | 40.0% | |
TCTTGCCATCTTGGTAAACA+AGG | - | chr5.3:24059186-24059205 | None:intergenic | 40.0% | |
TGGATCTTGTTAATGAGAGG+TGG | + | chr5.3:24059329-24059348 | MS.gene45097:CDS | 40.0% | |
TGTAGAGATGATGAAGAAGC+GGG | + | chr5.3:24059924-24059943 | MS.gene45097:CDS | 40.0% | |
TTCCAAGTATCTATAGGTCC+TGG | - | chr5.3:24059895-24059914 | None:intergenic | 40.0% | |
TTGGCATTATTGAGACCAGA+TGG | + | chr5.3:24059784-24059803 | MS.gene45097:CDS | 40.0% | |
TTGTTGGAGATTCTTTGGCT+AGG | + | chr5.3:24059110-24059129 | MS.gene45097:CDS | 40.0% | |
TTGTTGTATCAACTGGCCAT+TGG | + | chr5.3:24059380-24059399 | MS.gene45097:CDS | 40.0% | |
! | GGTGTTGAAGGATCAAATGA+AGG | + | chr5.3:24059283-24059302 | MS.gene45097:CDS | 40.0% |
!! | CTGCTCATTTTGAAGGTGAT+TGG | + | chr5.3:24059593-24059612 | MS.gene45097:CDS | 40.0% |
!! | GTGCCACTTACGGAATTTAT+TGG | - | chr5.3:24059209-24059228 | None:intergenic | 40.0% |
CGGGGACCAATACAAAGAAA+AGG | - | chr5.3:24059251-24059270 | None:intergenic | 45.0% | |
CTCTTTGATTGTGCCACATG+TGG | - | chr5.3:24058957-24058976 | None:intergenic | 45.0% | |
GGAGAAGATAGTTGGAGGAA+TGG | + | chr5.3:24059660-24059679 | MS.gene45097:CDS | 45.0% | |
TAAGGACCTGAATGACCATC+TGG | - | chr5.3:24059802-24059821 | None:intergenic | 45.0% | |
TGCCAGGACCTATAGATACT+TGG | + | chr5.3:24059890-24059909 | MS.gene45097:CDS | 45.0% | |
TGTTAATGAGAGGTGGGCAA+AGG | + | chr5.3:24059336-24059355 | MS.gene45097:CDS | 45.0% | |
TTGAGACCAGATGGTCATTC+AGG | + | chr5.3:24059793-24059812 | MS.gene45097:CDS | 45.0% | |
!! | GAGAAGGAAAGTGCCACTTA+CGG | - | chr5.3:24059219-24059238 | None:intergenic | 45.0% |
ATGTCACCACTCACCACATG+TGG | + | chr5.3:24058941-24058960 | MS.gene45097:CDS | 50.0% | |
ATTGTGCCACATGTGGTGAG+TGG | - | chr5.3:24058950-24058969 | None:intergenic | 50.0% | |
GAAGGTGATTGGGATAAGGC+TGG | + | chr5.3:24059604-24059623 | MS.gene45097:CDS | 50.0% | |
TGGTCCCCGTTTATAGTGCA+TGG | + | chr5.3:24059262-24059281 | MS.gene45097:CDS | 50.0% | |
! | TGTGTTCATTGGTGCTTGCC+AGG | + | chr5.3:24059874-24059893 | MS.gene45097:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 24058941 | 24059951 | 24058941 | ID=MS.gene45097 |
chr5.3 | mRNA | 24058941 | 24059951 | 24058941 | ID=MS.gene45097.t1;Parent=MS.gene45097 |
chr5.3 | exon | 24058941 | 24059951 | 24058941 | ID=MS.gene45097.t1.exon1;Parent=MS.gene45097.t1 |
chr5.3 | CDS | 24058941 | 24059951 | 24058941 | ID=cds.MS.gene45097.t1;Parent=MS.gene45097.t1 |
Gene Sequence |
Protein sequence |