Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45337.t1 | AFK39877.1 | 82.7 | 457 | 72 | 3 | 1 | 454 | 21 | 473 | 7.60E-169 | 603.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45337.t1 | G7ZX34 | 82.7 | 457 | 72 | 3 | 1 | 454 | 21 | 473 | 5.5e-169 | 603.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05510 | MS.gene45337 | 0.802197 | 6.29E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45337.t1 | MTR_4g046037 | 89.565 | 460 | 35 | 4 | 1 | 454 | 21 | 473 | 0.0 | 735 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCATCTTCATGCTCTTC+TGG | 0.168034 | 4.3:+54133084 | None:intergenic |
| AAAGATCAAAATTCCAAATA+TGG | 0.211463 | 4.3:-54133645 | MS.gene45337:CDS |
| TACCCTTCAAGTTCTCTTGC+AGG | 0.260140 | 4.3:-54135222 | MS.gene45337:intron |
| CATTGTCAAGAATAAGTTAA+TGG | 0.309843 | 4.3:-54133316 | MS.gene45337:CDS |
| GTTCTTCCTACTCAACTCTT+TGG | 0.315842 | 4.3:+54134013 | None:intergenic |
| TGTTTCCATCTTTGCTATCA+TGG | 0.331601 | 4.3:+54133163 | None:intergenic |
| CAGCAAAGAGGGAGCAATTT+GGG | 0.332710 | 4.3:-54133834 | MS.gene45337:CDS |
| CTCTTCCTCATGGAACATAT+TGG | 0.336893 | 4.3:+54132996 | None:intergenic |
| GCAGCAAAGAGGGAGCAATT+TGG | 0.344042 | 4.3:-54133835 | MS.gene45337:CDS |
| TTGGTGTCATGGTGCTTCAT+AGG | 0.354878 | 4.3:-54135301 | MS.gene45337:CDS |
| AAGATCAAAATTCCAAATAT+GGG | 0.383249 | 4.3:-54133644 | MS.gene45337:CDS |
| CACCATCTTCATGCTCTTCT+GGG | 0.395094 | 4.3:+54133085 | None:intergenic |
| CCAGTGGCACCATCATCTGC+AGG | 0.397681 | 4.3:+54133513 | None:intergenic |
| ATGGTGCTGTCCAACAAAAC+TGG | 0.401504 | 4.3:-54133068 | MS.gene45337:CDS |
| AATCACCAGGAGACAGATAA+TGG | 0.405689 | 4.3:-54133120 | MS.gene45337:CDS |
| TGAGGAAGAGCAGCAAGAAT+TGG | 0.406682 | 4.3:-54132983 | MS.gene45337:CDS |
| TGCTGCACTGCTTGGTGTCA+TGG | 0.410257 | 4.3:-54135312 | MS.gene45337:CDS |
| TGCCACAATCTGATCAAATA+TGG | 0.411282 | 4.3:+54133710 | None:intergenic |
| ATTCTTGCTGCTCTTCCTCA+TGG | 0.415016 | 4.3:+54132986 | None:intergenic |
| TTGATATTATTGATGACATT+TGG | 0.416722 | 4.3:-54135335 | None:intergenic |
| GCAGCAAGAATTGGAAGTTT+CGG | 0.420805 | 4.3:-54132974 | MS.gene45337:CDS |
| CAAGAGAAAGATACAATTGA+TGG | 0.421793 | 4.3:-54132940 | MS.gene45337:CDS |
| TTCAAAGCAAAACAATTGTC+TGG | 0.431511 | 4.3:-54133393 | MS.gene45337:CDS |
| TGAAAATCATGGAGAGGTAA+AGG | 0.432891 | 4.3:-54133277 | MS.gene45337:CDS |
| ACATTTGGTGCTGCACTGCT+TGG | 0.443846 | 4.3:-54135320 | MS.gene45337:CDS |
| GAAAACCATGATAGCAAAGA+TGG | 0.453192 | 4.3:-54133168 | MS.gene45337:CDS |
| TGATTCCATTATCTGTCTCC+TGG | 0.456585 | 4.3:+54133115 | None:intergenic |
| TTCATCTTCAAATTCCAGTT+GGG | 0.458451 | 4.3:+54132870 | None:intergenic |
| AAGAGAGAATCTTAAGAAAA+CGG | 0.464640 | 4.3:-54133784 | MS.gene45337:CDS |
| GATCTTTCTGTTTAACAAGA+AGG | 0.465332 | 4.3:+54135255 | None:intergenic |
| ATTCTTCAGCGAATCCCAAC+TGG | 0.469388 | 4.3:-54132884 | MS.gene45337:CDS |
| GATGATCATCGATGCTTATC+CGG | 0.482907 | 4.3:+54133736 | None:intergenic |
| AAATGAGAAGGAAGAGTACA+AGG | 0.488562 | 4.3:-54132848 | MS.gene45337:CDS |
| AAAGAGACTCTGATGAGAAA+AGG | 0.496759 | 4.3:-54133242 | MS.gene45337:CDS |
| CTGTCCAACAAAACTGGAGC+AGG | 0.505465 | 4.3:-54133062 | MS.gene45337:CDS |
| AACAATTGTCTGGCGCGAAG+AGG | 0.507928 | 4.3:-54133383 | MS.gene45337:CDS |
| TTTCATCTTCAAATTCCAGT+TGG | 0.510004 | 4.3:+54132869 | None:intergenic |
| GAAAACGGAAGCAGATATAG+AGG | 0.510276 | 4.3:-54133769 | MS.gene45337:CDS |
| CACCCTCAGTAATCAAAAGA+TGG | 0.514003 | 4.3:-54133967 | MS.gene45337:CDS |
| AAGAAGTTGAAGCTAAAGTC+GGG | 0.514900 | 4.3:-54133488 | MS.gene45337:CDS |
| AAAGACAACCCTGCAGATGA+TGG | 0.522825 | 4.3:-54133522 | MS.gene45337:CDS |
| TGACCTGCAAGAGAACTTGA+AGG | 0.531520 | 4.3:+54135219 | None:intergenic |
| CCTGCAGATGATGGTGCCAC+TGG | 0.535156 | 4.3:-54133513 | MS.gene45337:CDS |
| CTCATCTTTAAGTGAACTCA+TGG | 0.537848 | 4.3:+54133911 | None:intergenic |
| CAAGGAAGAAATAGATGAGT+CGG | 0.541389 | 4.3:-54132830 | MS.gene45337:CDS |
| TGATCAGATTGTGGCAGCAA+AGG | 0.543418 | 4.3:-54133703 | MS.gene45337:CDS |
| AGATCAAAATTCCAAATATG+GGG | 0.545641 | 4.3:-54133643 | MS.gene45337:CDS |
| CACCCAGAAGAGCATGAAGA+TGG | 0.546055 | 4.3:-54133087 | MS.gene45337:CDS |
| AACCATATTTGATCAGATTG+TGG | 0.546855 | 4.3:-54133712 | MS.gene45337:CDS |
| ACAATTGTCTGGCGCGAAGA+GGG | 0.547037 | 4.3:-54133382 | MS.gene45337:CDS |
| AAATTCACCGAGTTCAAAGA+TGG | 0.548295 | 4.3:-54133603 | MS.gene45337:CDS |
| TCAAAGAGAAGCTGAATCGC+AGG | 0.567235 | 4.3:-54133208 | MS.gene45337:CDS |
| ACAATCTGATCAAATATGGT+TGG | 0.567670 | 4.3:+54133714 | None:intergenic |
| TTAGAATGATGCAGCAAAGA+GGG | 0.569674 | 4.3:-54133845 | MS.gene45337:CDS |
| CTCGAGGTGAACACAGATGG+TGG | 0.572424 | 4.3:-54133426 | MS.gene45337:CDS |
| ATTAAGACGAATGAGGAGCT+AGG | 0.573973 | 4.3:-54133552 | MS.gene45337:CDS |
| AGAAGAAATTAAGACGAATG+AGG | 0.576711 | 4.3:-54133559 | MS.gene45337:CDS |
| CAGTGGCACCATCATCTGCA+GGG | 0.588604 | 4.3:+54133514 | None:intergenic |
| AAACTCGAGGTGAACACAGA+TGG | 0.588964 | 4.3:-54133429 | MS.gene45337:CDS |
| ACTGATAGAGTCCGCGTACG+CGG | 0.589311 | 4.3:-54133883 | MS.gene45337:CDS |
| TCTGGCGCGAAGAGGGAACA+TGG | 0.590464 | 4.3:-54133375 | MS.gene45337:CDS |
| AAAGAAGTTGAAGCTAAAGT+CGG | 0.590893 | 4.3:-54133489 | MS.gene45337:CDS |
| ATTTGAAGATGAAAATGAGA+AGG | 0.592817 | 4.3:-54132860 | MS.gene45337:CDS |
| CACCGAGTTCAAAGATGGAG+AGG | 0.598282 | 4.3:-54133598 | MS.gene45337:CDS |
| ATCGCACCAAAGAGTTGAGT+AGG | 0.598816 | 4.3:-54134019 | MS.gene45337:CDS |
| AATAAGTTAATGGAGAGCAA+TGG | 0.600982 | 4.3:-54133306 | MS.gene45337:CDS |
| GGTCATTTAAGTAGAACAGA+GGG | 0.601889 | 4.3:-54133354 | MS.gene45337:CDS |
| AACCTCTCCATCTTTGAACT+CGG | 0.606761 | 4.3:+54133596 | None:intergenic |
| AGTGGATAAGACTAATCACC+AGG | 0.620863 | 4.3:-54133133 | MS.gene45337:CDS |
| GATGAGTCGGAGTTTCAGCA+TGG | 0.623302 | 4.3:-54132817 | MS.gene45337:CDS |
| TCCAACAAAACTGGAGCAGG+AGG | 0.630041 | 4.3:-54133059 | MS.gene45337:CDS |
| CTTAGAATGATGCAGCAAAG+AGG | 0.631370 | 4.3:-54133846 | MS.gene45337:CDS |
| AGAGGGAGCAATTTGGGACA+AGG | 0.634904 | 4.3:-54133828 | MS.gene45337:CDS |
| ATACTGCTTCTCCGCGTACG+CGG | 0.638581 | 4.3:+54133872 | None:intergenic |
| GATCAAAATTCCAAATATGG+GGG | 0.650663 | 4.3:-54133642 | MS.gene45337:CDS |
| GACCTGCAAGAGAACTTGAA+GGG | 0.657023 | 4.3:+54135220 | None:intergenic |
| TGGTGAAGACGATGGTGTGG+AGG | 0.660055 | 4.3:-54132920 | MS.gene45337:CDS |
| TGATGGTGAAGACGATGGTG+TGG | 0.666883 | 4.3:-54132923 | MS.gene45337:CDS |
| AAAATCCAATATGTTCCATG+AGG | 0.669289 | 4.3:-54133001 | MS.gene45337:CDS |
| AGAGCATCAAAGAAAACTCG+AGG | 0.672880 | 4.3:-54133442 | MS.gene45337:CDS |
| GGGAGCAATTTGGGACAAGG+AGG | 0.676828 | 4.3:-54133825 | MS.gene45337:CDS |
| AGATGGAAACAACACAACAG+TGG | 0.677689 | 4.3:-54133151 | MS.gene45337:CDS |
| TGGTCATTTAAGTAGAACAG+AGG | 0.687815 | 4.3:-54133355 | MS.gene45337:CDS |
| TCATTTAAGTAGAACAGAGG+GGG | 0.688682 | 4.3:-54133352 | MS.gene45337:CDS |
| AGAAGTTGAAGCTAAAGTCG+GGG | 0.704983 | 4.3:-54133487 | MS.gene45337:CDS |
| ATATAGAGGACTTAAAACAC+CGG | 0.710492 | 4.3:-54133755 | MS.gene45337:CDS |
| AGTTGAAGCTAAAGTCGGGG+AGG | 0.721898 | 4.3:-54133484 | MS.gene45337:CDS |
| ACAATTGATGGTGAAGACGA+TGG | 0.732319 | 4.3:-54132928 | MS.gene45337:CDS |
| GTCATTTAAGTAGAACAGAG+GGG | 0.744568 | 4.3:-54133353 | MS.gene45337:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCAATTTGATATATTT+AGG | + | chr4.3:54133034-54133053 | None:intergenic | 10.0% |
| !! | AAATATTTAGGTAATTATAG+AGG | + | chr4.3:54134061-54134080 | None:intergenic | 15.0% |
| !! | ATATTCAAAACATAAACTTT+AGG | + | chr4.3:54133933-54133952 | None:intergenic | 15.0% |
| !! | ATTGAAATATCAAATTATTC+TGG | - | chr4.3:54133782-54133801 | MS.gene45337:CDS | 15.0% |
| !! | TTGAAATATCAAATTATTCT+GGG | - | chr4.3:54133783-54133802 | MS.gene45337:CDS | 15.0% |
| !!! | ATTAAAATGGATGTTTTTTT+TGG | + | chr4.3:54132975-54132994 | None:intergenic | 15.0% |
| !!! | ATTTTCTGTTAGTAATTTTA+TGG | - | chr4.3:54133347-54133366 | MS.gene45337:CDS | 15.0% |
| !!! | TTTTTTATCAATTTTGTAGA+AGG | - | chr4.3:54134085-54134104 | MS.gene45337:intron | 15.0% |
| !! | AAAGATCAAAATTCCAAATA+TGG | - | chr4.3:54134488-54134507 | MS.gene45337:intron | 20.0% |
| !! | AACAAAATACAATTAGAGAA+TGG | - | chr4.3:54133417-54133436 | MS.gene45337:CDS | 20.0% |
| !! | AAGATCAAAATTCCAAATAT+GGG | - | chr4.3:54134489-54134508 | MS.gene45337:intron | 20.0% |
| !! | AGAAAAACATAATCATATGA+AGG | + | chr4.3:54133506-54133525 | None:intergenic | 20.0% |
| !! | ATTTGATATTTCAATTCAAG+TGG | + | chr4.3:54133777-54133796 | None:intergenic | 20.0% |
| !! | CATTTAGTGACTAATTAAAA+TGG | + | chr4.3:54132988-54133007 | None:intergenic | 20.0% |
| !!! | AATGGAATTTTTGAAAATCA+TGG | - | chr4.3:54134845-54134864 | MS.gene45337:intron | 20.0% |
| !!! | ATTCTCTAATTGTATTTTGT+TGG | + | chr4.3:54133418-54133437 | None:intergenic | 20.0% |
| !!! | CAATCAAATTAAAAAGTGTA+GGG | - | chr4.3:54133745-54133764 | MS.gene45337:CDS | 20.0% |
| !!! | TGTTTTGAATATCTTTCTTT+AGG | - | chr4.3:54133941-54133960 | MS.gene45337:CDS | 20.0% |
| !!! | TGTTTTTTTTGGTGTTAAAA+TGG | + | chr4.3:54132964-54132983 | None:intergenic | 20.0% |
| ! | AAGAGAGAATCTTAAGAAAA+CGG | - | chr4.3:54134349-54134368 | MS.gene45337:intron | 25.0% |
| ! | ACATAAACTTTAGGTATCTT+TGG | + | chr4.3:54133924-54133943 | None:intergenic | 25.0% |
| ! | AGACTAGTAGAATACTTTAT+TGG | - | chr4.3:54133635-54133654 | MS.gene45337:CDS | 25.0% |
| ! | AGATCAAAATTCCAAATATG+GGG | - | chr4.3:54134490-54134509 | MS.gene45337:intron | 25.0% |
| ! | ATCATCAGAATTGAATTGAA+AGG | + | chr4.3:54134001-54134020 | None:intergenic | 25.0% |
| ! | ATTTGAAGATGAAAATGAGA+AGG | - | chr4.3:54135273-54135292 | MS.gene45337:CDS | 25.0% |
| ! | CATTGTCAAGAATAAGTTAA+TGG | - | chr4.3:54134817-54134836 | MS.gene45337:intron | 25.0% |
| ! | TAGAAAAAGAATTGCTTCAT+TGG | + | chr4.3:54133678-54133697 | None:intergenic | 25.0% |
| ! | TAGTCACTAAATGTGTAAAA+CGG | - | chr4.3:54132995-54133014 | MS.gene45337:CDS | 25.0% |
| !! | AAATTAAAAAGTGTAGGGAA+GGG | - | chr4.3:54133750-54133769 | MS.gene45337:CDS | 25.0% |
| !! | AATTCAATTCTGATGATGTT+TGG | - | chr4.3:54134004-54134023 | MS.gene45337:CDS | 25.0% |
| !! | CCAATCAAATTAAAAAGTGT+AGG | - | chr4.3:54133744-54133763 | MS.gene45337:CDS | 25.0% |
| !! | TTATTGGTCAGTTAATTTGA+GGG | - | chr4.3:54133651-54133670 | MS.gene45337:CDS | 25.0% |
| !! | TTTATTGGTCAGTTAATTTG+AGG | - | chr4.3:54133650-54133669 | MS.gene45337:CDS | 25.0% |
| !!! | AATTTTTGAAAATCATGGAG+AGG | - | chr4.3:54134850-54134869 | MS.gene45337:intron | 25.0% |
| !!! | CCTACACTTTTTAATTTGAT+TGG | + | chr4.3:54133747-54133766 | None:intergenic | 25.0% |
| AAAATCCAATATGTTCCATG+AGG | - | chr4.3:54135132-54135151 | MS.gene45337:intron | 30.0% | |
| AAAGAAGTTGAAGCTAAAGT+CGG | - | chr4.3:54134644-54134663 | MS.gene45337:intron | 30.0% | |
| AACCATATTTGATCAGATTG+TGG | - | chr4.3:54134421-54134440 | MS.gene45337:intron | 30.0% | |
| AATAAGTTAATGGAGAGCAA+TGG | - | chr4.3:54134827-54134846 | MS.gene45337:intron | 30.0% | |
| ACAATCTGATCAAATATGGT+TGG | + | chr4.3:54134422-54134441 | None:intergenic | 30.0% | |
| AGAAGAAATTAAGACGAATG+AGG | - | chr4.3:54134574-54134593 | MS.gene45337:intron | 30.0% | |
| ATATAGAGGACTTAAAACAC+CGG | - | chr4.3:54134378-54134397 | MS.gene45337:intron | 30.0% | |
| ATCTTTGGATTAAGGAAGAA+CGG | + | chr4.3:54133909-54133928 | None:intergenic | 30.0% | |
| CAAGAGAAAGATACAATTGA+TGG | - | chr4.3:54135193-54135212 | MS.gene45337:intron | 30.0% | |
| CTTTAGGTATCTTTGGATTA+AGG | + | chr4.3:54133917-54133936 | None:intergenic | 30.0% | |
| GATCAAAATTCCAAATATGG+GGG | - | chr4.3:54134491-54134510 | MS.gene45337:intron | 30.0% | |
| GATCTTTCTGTTTAACAAGA+AGG | + | chr4.3:54132881-54132900 | None:intergenic | 30.0% | |
| GGAATGGAACTGAATTAAAT+GGG | - | chr4.3:54133817-54133836 | MS.gene45337:CDS | 30.0% | |
| TGGAATGGAACTGAATTAAA+TGG | - | chr4.3:54133816-54133835 | MS.gene45337:CDS | 30.0% | |
| TTATTCTGGGTATGTTTGAT+TGG | - | chr4.3:54133796-54133815 | MS.gene45337:CDS | 30.0% | |
| TTCAAAGCAAAACAATTGTC+TGG | - | chr4.3:54134740-54134759 | MS.gene45337:intron | 30.0% | |
| TTCATCTTCAAATTCCAGTT+GGG | + | chr4.3:54135266-54135285 | None:intergenic | 30.0% | |
| TTTCATCTTCAAATTCCAGT+TGG | + | chr4.3:54135267-54135286 | None:intergenic | 30.0% | |
| ! | CAAATTAAAAAGTGTAGGGA+AGG | - | chr4.3:54133749-54133768 | MS.gene45337:CDS | 30.0% |
| !! | ATTGTATTTTGTTGGTCTCT+TGG | + | chr4.3:54133410-54133429 | None:intergenic | 30.0% |
| AAAGAGACTCTGATGAGAAA+AGG | - | chr4.3:54134891-54134910 | MS.gene45337:intron | 35.0% | |
| AAATTCACCGAGTTCAAAGA+TGG | - | chr4.3:54134530-54134549 | MS.gene45337:intron | 35.0% | |
| AAGAAGTTGAAGCTAAAGTC+GGG | - | chr4.3:54134645-54134664 | MS.gene45337:intron | 35.0% | |
| ATGATTCCTTAGTCCTTTGA+TGG | - | chr4.3:54133714-54133733 | MS.gene45337:CDS | 35.0% | |
| CAAAGGACTAAGGAATCATA+AGG | + | chr4.3:54133713-54133732 | None:intergenic | 35.0% | |
| CAAGGAAGAAATAGATGAGT+CGG | - | chr4.3:54135303-54135322 | MS.gene45337:CDS | 35.0% | |
| CGGGGTATGATAAACAATAT+TGG | - | chr4.3:54133176-54133195 | MS.gene45337:CDS | 35.0% | |
| CTCATCTTTAAGTGAACTCA+TGG | + | chr4.3:54134225-54134244 | None:intergenic | 35.0% | |
| GAAAACCATGATAGCAAAGA+TGG | - | chr4.3:54134965-54134984 | MS.gene45337:intron | 35.0% | |
| GGTCATTTAAGTAGAACAGA+GGG | - | chr4.3:54134779-54134798 | MS.gene45337:intron | 35.0% | |
| GTCAATTTGTATCTGCAAGT+GGG | - | chr4.3:54133070-54133089 | MS.gene45337:CDS | 35.0% | |
| GTCATTTAAGTAGAACAGAG+GGG | - | chr4.3:54134780-54134799 | MS.gene45337:intron | 35.0% | |
| TCATTTAAGTAGAACAGAGG+GGG | - | chr4.3:54134781-54134800 | MS.gene45337:intron | 35.0% | |
| TGAAAATCATGGAGAGGTAA+AGG | - | chr4.3:54134856-54134875 | MS.gene45337:intron | 35.0% | |
| TGCCACAATCTGATCAAATA+TGG | + | chr4.3:54134426-54134445 | None:intergenic | 35.0% | |
| TGGTCATTTAAGTAGAACAG+AGG | - | chr4.3:54134778-54134797 | MS.gene45337:intron | 35.0% | |
| TGTCAATTTGTATCTGCAAG+TGG | - | chr4.3:54133069-54133088 | MS.gene45337:CDS | 35.0% | |
| TTAGAATGATGCAGCAAAGA+GGG | - | chr4.3:54134288-54134307 | MS.gene45337:intron | 35.0% | |
| ! | AAATGAGAAGGAAGAGTACA+AGG | - | chr4.3:54135285-54135304 | MS.gene45337:CDS | 35.0% |
| ! | TGTTTCCATCTTTGCTATCA+TGG | + | chr4.3:54134973-54134992 | None:intergenic | 35.0% |
| !! | CTCCATCTTTTGATTACTGA+GGG | + | chr4.3:54134171-54134190 | None:intergenic | 35.0% |
| !! | TCTTTGCTATCATGGTTTTC+AGG | + | chr4.3:54134965-54134984 | None:intergenic | 35.0% |
| AACAGGAAAAGAGAAGGTAG+TGG | - | chr4.3:54133605-54133624 | MS.gene45337:CDS | 40.0% | |
| AACCTCTCCATCTTTGAACT+CGG | + | chr4.3:54134540-54134559 | None:intergenic | 40.0% | |
| AATCACCAGGAGACAGATAA+TGG | - | chr4.3:54135013-54135032 | MS.gene45337:intron | 40.0% | |
| ACAGGAAAAGAGAAGGTAGT+GGG | - | chr4.3:54133606-54133625 | MS.gene45337:CDS | 40.0% | |
| ACTTTCATCACCCCCATATT+TGG | + | chr4.3:54134504-54134523 | None:intergenic | 40.0% | |
| AGAAGTTGAAGCTAAAGTCG+GGG | - | chr4.3:54134646-54134665 | MS.gene45337:intron | 40.0% | |
| AGATGGAAACAACACAACAG+TGG | - | chr4.3:54134982-54135001 | MS.gene45337:intron | 40.0% | |
| AGTGGATAAGACTAATCACC+AGG | - | chr4.3:54135000-54135019 | MS.gene45337:intron | 40.0% | |
| ATTAAGACGAATGAGGAGCT+AGG | - | chr4.3:54134581-54134600 | MS.gene45337:intron | 40.0% | |
| ATTAAGATCATGTCCCTTGC+AGG | - | chr4.3:54133199-54133218 | MS.gene45337:CDS | 40.0% | |
| CACCCTCAGTAATCAAAAGA+TGG | - | chr4.3:54134166-54134185 | MS.gene45337:intron | 40.0% | |
| CTCTTCCTCATGGAACATAT+TGG | + | chr4.3:54135140-54135159 | None:intergenic | 40.0% | |
| CTGGGTATGTTTGATTGGAA+TGG | - | chr4.3:54133801-54133820 | MS.gene45337:CDS | 40.0% | |
| CTTAGAATGATGCAGCAAAG+AGG | - | chr4.3:54134287-54134306 | MS.gene45337:intron | 40.0% | |
| GAAAACGGAAGCAGATATAG+AGG | - | chr4.3:54134364-54134383 | MS.gene45337:intron | 40.0% | |
| GATGATCATCGATGCTTATC+CGG | + | chr4.3:54134400-54134419 | None:intergenic | 40.0% | |
| GATTGGTGTATAGCCATCAA+AGG | + | chr4.3:54133730-54133749 | None:intergenic | 40.0% | |
| GCAGCAAGAATTGGAAGTTT+CGG | - | chr4.3:54135159-54135178 | MS.gene45337:intron | 40.0% | |
| GGATTAAGGAAGAACGGTTA+TGG | + | chr4.3:54133903-54133922 | None:intergenic | 40.0% | |
| GTATAGCCATCAAAGGACTA+AGG | + | chr4.3:54133723-54133742 | None:intergenic | 40.0% | |
| GTTCTTCCTACTCAACTCTT+TGG | + | chr4.3:54134123-54134142 | None:intergenic | 40.0% | |
| TGATTCCATTATCTGTCTCC+TGG | + | chr4.3:54135021-54135040 | None:intergenic | 40.0% | |
| TTAAGATCATGTCCCTTGCA+GGG | - | chr4.3:54133200-54133219 | MS.gene45337:CDS | 40.0% | |
| ! | ACTACCTTCTCTTTTCCTGT+TGG | + | chr4.3:54133606-54133625 | None:intergenic | 40.0% |
| ! | AGAGCATCAAAGAAAACTCG+AGG | - | chr4.3:54134691-54134710 | MS.gene45337:intron | 40.0% |
| ! | AGCTTCAACTTCTTTTCCAG+TGG | + | chr4.3:54134639-54134658 | None:intergenic | 40.0% |
| ! | TTCCTGTTGGCTGTAAACAA+CGG | + | chr4.3:54133593-54133612 | None:intergenic | 40.0% |
| !! | ACAATTGATGGTGAAGACGA+TGG | - | chr4.3:54135205-54135224 | MS.gene45337:intron | 40.0% |
| !! | GCTCCATCTTTTGATTACTG+AGG | + | chr4.3:54134172-54134191 | None:intergenic | 40.0% |
| !! | GTTTTCAGGCTTCAGCAATT+TGG | + | chr4.3:54134951-54134970 | None:intergenic | 40.0% |
| AAACTCGAGGTGAACACAGA+TGG | - | chr4.3:54134704-54134723 | MS.gene45337:intron | 45.0% | |
| AAAGACAACCCTGCAGATGA+TGG | - | chr4.3:54134611-54134630 | MS.gene45337:intron | 45.0% | |
| AACCGTTGTTTACAGCCAAC+AGG | - | chr4.3:54133588-54133607 | MS.gene45337:CDS | 45.0% | |
| ACAGCCAACAGGAAAAGAGA+AGG | - | chr4.3:54133599-54133618 | MS.gene45337:CDS | 45.0% | |
| ATCAAATCCCCACACAACCT+TGG | + | chr4.3:54133140-54133159 | None:intergenic | 45.0% | |
| ATCGCACCAAAGAGTTGAGT+AGG | - | chr4.3:54134114-54134133 | MS.gene45337:intron | 45.0% | |
| ATTCTTCAGCGAATCCCAAC+TGG | - | chr4.3:54135249-54135268 | MS.gene45337:CDS | 45.0% | |
| ATTCTTGCTGCTCTTCCTCA+TGG | + | chr4.3:54135150-54135169 | None:intergenic | 45.0% | |
| CACCATCTTCATGCTCTTCT+GGG | + | chr4.3:54135051-54135070 | None:intergenic | 45.0% | |
| CAGCAAAGAGGGAGCAATTT+GGG | - | chr4.3:54134299-54134318 | MS.gene45337:intron | 45.0% | |
| CAGGAAAAGAGAAGGTAGTG+GGG | - | chr4.3:54133607-54133626 | MS.gene45337:CDS | 45.0% | |
| GACCTGCAAGAGAACTTGAA+GGG | + | chr4.3:54132916-54132935 | None:intergenic | 45.0% | |
| GATTTGATCATACCCCGTCA+TGG | - | chr4.3:54133152-54133171 | MS.gene45337:CDS | 45.0% | |
| TCAAAGAGAAGCTGAATCGC+AGG | - | chr4.3:54134925-54134944 | MS.gene45337:intron | 45.0% | |
| TCAAATCCCCACACAACCTT+GGG | + | chr4.3:54133139-54133158 | None:intergenic | 45.0% | |
| TGACCTGCAAGAGAACTTGA+AGG | + | chr4.3:54132917-54132936 | None:intergenic | 45.0% | |
| TGAGGAAGAGCAGCAAGAAT+TGG | - | chr4.3:54135150-54135169 | MS.gene45337:intron | 45.0% | |
| TGATCAGATTGTGGCAGCAA+AGG | - | chr4.3:54134430-54134449 | MS.gene45337:intron | 45.0% | |
| TTATCATACCCCGTCCATGA+CGG | + | chr4.3:54133169-54133188 | None:intergenic | 45.0% | |
| ! | TACCCTTCAAGTTCTCTTGC+AGG | - | chr4.3:54132911-54132930 | MS.gene45337:CDS | 45.0% |
| !! | ATGGTGCTGTCCAACAAAAC+TGG | - | chr4.3:54135065-54135084 | MS.gene45337:intron | 45.0% |
| !! | TTGGTGTCATGGTGCTTCAT+AGG | - | chr4.3:54132832-54132851 | MS.gene45337:CDS | 45.0% |
| !! | ATAAAAAAAACAAAATATTT+AGG | + | chr4.3:54134073-54134092 | None:intergenic | 5.0% |
| AAATCCCCACACAACCTTGG+GGG | + | chr4.3:54133137-54133156 | None:intergenic | 50.0% | |
| AACAATTGTCTGGCGCGAAG+AGG | - | chr4.3:54134750-54134769 | MS.gene45337:intron | 50.0% | |
| ACAATTGTCTGGCGCGAAGA+GGG | - | chr4.3:54134751-54134770 | MS.gene45337:intron | 50.0% | |
| ACTTACCATCCCGTCCCAAA+TGG | + | chr4.3:54133113-54133132 | None:intergenic | 50.0% | |
| AGTTGAAGCTAAAGTCGGGG+AGG | - | chr4.3:54134649-54134668 | MS.gene45337:intron | 50.0% | |
| CAAATCCCCACACAACCTTG+GGG | + | chr4.3:54133138-54133157 | None:intergenic | 50.0% | |
| CACCGAGTTCAAAGATGGAG+AGG | - | chr4.3:54134535-54134554 | MS.gene45337:intron | 50.0% | |
| CTCATGACAGAGTCCTTGCA+GGG | + | chr4.3:54133230-54133249 | None:intergenic | 50.0% | |
| CTGTCCAACAAAACTGGAGC+AGG | - | chr4.3:54135071-54135090 | MS.gene45337:intron | 50.0% | |
| GATGAGTCGGAGTTTCAGCA+TGG | - | chr4.3:54135316-54135335 | MS.gene45337:CDS | 50.0% | |
| GCACCATCTTCATGCTCTTC+TGG | + | chr4.3:54135052-54135071 | None:intergenic | 50.0% | |
| GCAGCAAAGAGGGAGCAATT+TGG | - | chr4.3:54134298-54134317 | MS.gene45337:intron | 50.0% | |
| GTATCTGCAAGTGGGATCTC+CGG | - | chr4.3:54133078-54133097 | MS.gene45337:CDS | 50.0% | |
| TATCATACCCCGTCCATGAC+GGG | + | chr4.3:54133168-54133187 | None:intergenic | 50.0% | |
| TCCAACAAAACTGGAGCAGG+AGG | - | chr4.3:54135074-54135093 | MS.gene45337:intron | 50.0% | |
| TGATCATACCCCGTCATGGA+CGG | - | chr4.3:54133156-54133175 | MS.gene45337:CDS | 50.0% | |
| ! | AGAGGGAGCAATTTGGGACA+AGG | - | chr4.3:54134305-54134324 | MS.gene45337:intron | 50.0% |
| ! | CACCCAGAAGAGCATGAAGA+TGG | - | chr4.3:54135046-54135065 | MS.gene45337:intron | 50.0% |
| ! | TGATGGTGAAGACGATGGTG+TGG | - | chr4.3:54135210-54135229 | MS.gene45337:intron | 50.0% |
| !! | ACATTTGGTGCTGCACTGCT+TGG | - | chr4.3:54132813-54132832 | MS.gene45337:CDS | 50.0% |
| AAGTCCCCCCAAGGTTGTGT+GGG | - | chr4.3:54133129-54133148 | MS.gene45337:CDS | 55.0% | |
| AATCCCCACACAACCTTGGG+GGG | + | chr4.3:54133136-54133155 | None:intergenic | 55.0% | |
| ACTGATAGAGTCCGCGTACG+CGG | - | chr4.3:54134250-54134269 | MS.gene45337:intron | 55.0% | |
| ATACTGCTTCTCCGCGTACG+CGG | + | chr4.3:54134264-54134283 | None:intergenic | 55.0% | |
| ATCATACCCCGTCATGGACG+GGG | - | chr4.3:54133158-54133177 | MS.gene45337:CDS | 55.0% | |
| ATCATACCCCGTCCATGACG+GGG | + | chr4.3:54133167-54133186 | None:intergenic | 55.0% | |
| ATGACAGAGTCCTTGCAGGG+CGG | + | chr4.3:54133227-54133246 | None:intergenic | 55.0% | |
| CAGTGGCACCATCATCTGCA+GGG | + | chr4.3:54134622-54134641 | None:intergenic | 55.0% | |
| CTCGAGGTGAACACAGATGG+TGG | - | chr4.3:54134707-54134726 | MS.gene45337:intron | 55.0% | |
| GATCATACCCCGTCATGGAC+GGG | - | chr4.3:54133157-54133176 | MS.gene45337:CDS | 55.0% | |
| GCTCATGACAGAGTCCTTGC+AGG | + | chr4.3:54133231-54133250 | None:intergenic | 55.0% | |
| TAAGTCCCCCCAAGGTTGTG+TGG | - | chr4.3:54133128-54133147 | MS.gene45337:CDS | 55.0% | |
| TGGTGAAGACGATGGTGTGG+AGG | - | chr4.3:54135213-54135232 | MS.gene45337:intron | 55.0% | |
| ! | GGGAGCAATTTGGGACAAGG+AGG | - | chr4.3:54134308-54134327 | MS.gene45337:intron | 55.0% |
| !! | GCCTCCTGCTCCAGTTTTGT+TGG | + | chr4.3:54135078-54135097 | None:intergenic | 55.0% |
| !! | TGCTGCACTGCTTGGTGTCA+TGG | - | chr4.3:54132821-54132840 | MS.gene45337:CDS | 55.0% |
| AGTCCCCCCAAGGTTGTGTG+GGG | - | chr4.3:54133130-54133149 | MS.gene45337:CDS | 60.0% | |
| CCAGTGGCACCATCATCTGC+AGG | + | chr4.3:54134623-54134642 | None:intergenic | 60.0% | |
| TCCCAAATGGAGCAGTCCGC+CGG | + | chr4.3:54133100-54133119 | None:intergenic | 60.0% | |
| TCTGCAAGTGGGATCTCCGG+CGG | - | chr4.3:54133081-54133100 | MS.gene45337:CDS | 60.0% | |
| TCTGGCGCGAAGAGGGAACA+TGG | - | chr4.3:54134758-54134777 | MS.gene45337:intron | 60.0% | |
| ! | CGGACTGCTCCATTTGGGAC+GGG | - | chr4.3:54133101-54133120 | MS.gene45337:CDS | 60.0% |
| ! | CTGCTCCATTTGGGACGGGA+TGG | - | chr4.3:54133105-54133124 | MS.gene45337:CDS | 60.0% |
| ! | GCGGACTGCTCCATTTGGGA+CGG | - | chr4.3:54133100-54133119 | MS.gene45337:CDS | 60.0% |
| ! | GTAGAACAGAGGGGGTGCGT+TGG | - | chr4.3:54134789-54134808 | MS.gene45337:intron | 60.0% |
| !! | CCTGCAGATGATGGTGCCAC+TGG | - | chr4.3:54134620-54134639 | MS.gene45337:intron | 60.0% |
| !! | TCCGGCGGACTGCTCCATTT+GGG | - | chr4.3:54133096-54133115 | MS.gene45337:CDS | 60.0% |
| CGGGATGGTAAGTCCCCCCA+AGG | - | chr4.3:54133120-54133139 | MS.gene45337:CDS | 65.0% | |
| TTGCAGGGCGGACCCTGCAA+GGG | + | chr4.3:54133215-54133234 | None:intergenic | 65.0% | |
| !! | CTCCGGCGGACTGCTCCATT+TGG | - | chr4.3:54133095-54133114 | MS.gene45337:CDS | 65.0% |
| CTTGCAGGGCGGACCCTGCA+AGG | + | chr4.3:54133216-54133235 | None:intergenic | 70.0% | |
| CTTGCAGGGTCCGCCCTGCA+AGG | - | chr4.3:54133214-54133233 | MS.gene45337:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 54132810 | 54135345 | 54132810 | ID=MS.gene45337 |
| chr4.3 | mRNA | 54132810 | 54135345 | 54132810 | ID=MS.gene45337.t1;Parent=MS.gene45337 |
| chr4.3 | exon | 54135223 | 54135345 | 54135223 | ID=MS.gene45337.t1.exon1;Parent=MS.gene45337.t1 |
| chr4.3 | CDS | 54135223 | 54135345 | 54135223 | ID=cds.MS.gene45337.t1;Parent=MS.gene45337.t1 |
| chr4.3 | exon | 54132810 | 54134051 | 54132810 | ID=MS.gene45337.t1.exon2;Parent=MS.gene45337.t1 |
| chr4.3 | CDS | 54132810 | 54134051 | 54132810 | ID=cds.MS.gene45337.t1;Parent=MS.gene45337.t1 |
| Gene Sequence |
| Protein sequence |
